Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1163

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2540
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.36

Warning! 99 characters in sequence are not A, C, G, or T


Found at i:203 original size:16 final size:16

Alignment explanation


    Indices: 182--217  Score: 56
    Period size: 16  Copynumber: 2.3  Consensus size: 16

        172 TTTGGACTGA

                            
        182 ATTGAATAGAATGAAT
          1 ATTGAATAGAATGAAT

                      *     
        198 ATTGAATAGATTGAAT
          1 ATTGAATAGAATGAAT

                 
        214 -TTGA
          1 ATTGA

        218 TTATTTAGAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    4  0.21
  16   15  0.79

ACGTcount: A:0.44, C:0.00, G:0.19, T:0.36


Consensus pattern (16 bp):   
ATTGAATAGAATGAAT
Done.