Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4391

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Found at i:238 original size:132 final size:132

Alignment explanation


    Indices: 1--539  Score: 726
    Period size: 132  Copynumber: 4.1  Consensus size: 132

                              *        *              *    *    *            
          1 AATTTTCAACCCACT-TCACTGCTGCTTAGGGAGACAAGGCTAGGTGGCTTAGATCTGCTTCCCA
          1 AATTTTCAACCCACTCT-GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCA

                *      *       *       *                  *                  
         65 CTATATTGGAAGGATAAGACTTGTCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
         65 CTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATC

               
        130 TAA
        130 TAA

                                                                             
        133 AATTTTCAACCCACTAC-GCTGCTGCTCAGGGAGACAAGGCTTGGT-AGCTTAAATCTGCTTCCC
          1 AATTTTCAACCCACT-CTGCTGCTGCTCAGGGAGACAAGGCTTGGTGA-CTTAAATCTGCTTCCC

                                     *                      *                
        196 ACTATCTTGGAAAGATAAGATTTGTTGTCTTCGATCTGCTCCACTACAACTTAGGGAGATAAGAT
         64 ACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGAT

               *
        261 CTAC
        129 CTAA

                                *                                            
        265 AATTTTCAACCCACTCTGCTACTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCAC
          1 AATTTTCAACCCACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCAC

                                   *     *      *  *     *   *          *    
        330 TATCTTGGAAAGATAAGATTTGTTGTCTTTGATCTGTTCTACTACTGCTAAGGGAGATAACATC-
         66 TATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATCT

              
        394 AA
        131 AA

                                *      *          *  *       **              
        396 CAATTTTCAACCCACTCTGCAGCTGCTTAGGGAGACAATGCCTGGTGACAAAAATCTGCTTCCCA
          1 -AATTTTCAACCCACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCA

            *           *         **              *                          
        461 TTATCTTGGAAAAATAAGATTTACCGTCTTCGATCTGCCCCACTACAGCTTAGGGAGATAAGATC
         65 CTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATC

               
        526 TAA
        130 TAA

                       
        529 AATTTTCAACC
          1 AATTTTCAACC

        540 T


Statistics
Matches: 359,  Mismatches: 41, Indels: 14
        0.87            0.10        0.03

Matches are distributed among these distances:
 131    2  0.01
 132  354  0.99
 133    3  0.01

ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Consensus pattern (132 bp):   
AATTTTCAACCCACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCAC
TATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATCT
AA

Done.