Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1939

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1197
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.26


Found at i:539 original size:97 final size:97

Alignment explanation


    Indices: 430--720  Score: 573
    Period size: 97  Copynumber: 3.0  Consensus size: 97

        420 TGTTTTGGGG

                                                                      *      
        430 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCGGTATCA
          1 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA

                                            
        495 AAATTGAGTTTTGGAAATTCCCTATATTCAAA
         66 AAATTGAGTTTTGGAAATTCCCTATATTCAAA

                                                                             
        527 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA
          1 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA

                                            
        592 AAATTGAGTTTTGGAAATTCCCTATATTCAAA
         66 AAATTGAGTTTTGGAAATTCCCTATATTCAAA

                                                                             
        624 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA
          1 AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA

                                            
        689 AAATTGAGTTTTGGAAATTCCCTATATTCAAA
         66 AAATTGAGTTTTGGAAATTCCCTATATTCAAA

        721 TTAATTTAAT


Statistics
Matches: 193,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  97  193  1.00

ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25


Consensus pattern (97 bp):   
AAATTAACAGAGAGAAGTAAAAAAGAAATCGGAGAACTTACATAAAGCTAACAGCTTCAGTATCA
AAATTGAGTTTTGGAAATTCCCTATATTCAAA
Done.