Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1550

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36


Found at i:73 original size:13 final size:13

Alignment explanation


    Indices: 55--79  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         45 TGTTGTAGTT

                         
         55 TTTTTTCTTTTTC
          1 TTTTTTCTTTTTC

                        
         68 TTTTTTCTTTTT
          1 TTTTTTCTTTTT

         80 TCCCTTCTGA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (13 bp):   
TTTTTTCTTTTTC
Done.