Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold908

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4379
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35


Found at i:3045 original size:43 final size:43

Alignment explanation


    Indices: 2984--3147  Score: 210
    Period size: 43  Copynumber: 3.8  Consensus size: 43

       2974 TTTTTGGTAA

                                    *                  
       2984 GTATTTTCATGTAAGACCACGTCTAGGACGATGGCATCGATTT
          1 GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT

                    *                *   *             
       3027 GTATTTTCGTGTAAGACCACGTCTGAGACAATGGCATCGATTT
          1 GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT

                                                          
       3070 GTATTTTCGA-GTAAGACC-CTGTCTGGGAC-AGTGGCATCGATTT
          1 GTATTTTC-ATGTAAGACCAC-GTCTGGGACGA-TGGCATCGATTT

              *    *                            
       3113 GCGA-TTACATGTAAGACCACGTCTGGGACGATGGC
          1 G-TATTTTCATGTAAGACCACGTCTGGGACGATGGC

       3148 GTTGTATGAA


Statistics
Matches: 106,  Mismatches: 8, Indels: 14
        0.83            0.06        0.11

Matches are distributed among these distances:
  42    3  0.03
  43  100  0.94
  44    3  0.03

ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30


Consensus pattern (43 bp):   
GTATTTTCATGTAAGACCACGTCTGGGACGATGGCATCGATTT

Done.