Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1109

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2777
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:976 original size:99 final size:99

Alignment explanation


    Indices: 805--1438  Score: 1205
    Period size: 99  Copynumber: 6.4  Consensus size: 99

        795 CAGGGAAGTG

                    *     *     *  *       *             *                   
        805 AGATTCGCTGTTGTAGCTTCAATTTTTTAAATTGCAATGTCGGGGGAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
        870 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                                                                             
        904 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
        969 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                                                                             
       1003 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
       1068 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                                                                             
       1102 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
       1167 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                                                                             
       1201 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
       1266 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                                                                             
       1300 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA

                                              
       1365 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA
         66 GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

                      *                             
       1399 AGATTCGCCGCTGTGGCTTCGATCTTTTAAACTGCAATGT
          1 AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGT

       1439 ATGGTTACTT


Statistics
Matches: 528,  Mismatches: 7, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  99  528  1.00

ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33


Consensus pattern (99 bp):   
AGATTCGCCGTTGTGGCTTCGATCTTTTAAACTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTA
GCTTCAATCTGTTCCGTTGCATCGCCTGAAGGTA

Done.