Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1988

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.30

Warning! 172 characters in sequence are not A, C, G, or T


Found at i:993 original size:15 final size:15

Alignment explanation


    Indices: 973--1001  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        963 GTGATTAAAA

                           
        973 TGTAAGTATTCATGC
          1 TGTAAGTATTCATGC

                          
        988 TGTAAGTATTCATG
          1 TGTAAGTATTCATG

       1002 TTGTCTTAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41


Consensus pattern (15 bp):   
TGTAAGTATTCATGC
Done.