Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1124

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2718
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29


Found at i:208 original size:92 final size:93

Alignment explanation


    Indices: 82--270  Score: 371
    Period size: 92  Copynumber: 2.0  Consensus size: 93

         72 AACAAGGCTA

                                                                             
         82 AAAATACACAATTATGAAACCCGAGACGTTTCGACTCAACACTGAGTCATTTTCAGTCGGAAACA
          1 AAAATACACAATTATGAAACCCGAGACGTTTCGACTCAACACTGAGTCATTTTCAGTCGGAAACA

                                        
        147 ATAAAAAA-TTTTTAAAAGAAAAACGCT
         66 ATAAAAAATTTTTTAAAAGAAAAACGCT

                                                                             
        174 AAAATACACAATTATGAAACCCGAGACGTTTCGACTCAACACTGAGTCATTTTCAGTCGGAAACA
          1 AAAATACACAATTATGAAACCCGAGACGTTTCGACTCAACACTGAGTCATTTTCAGTCGGAAACA

                                        
        239 ATAAAAAATTTTTTAAAAGAAAAACGCT
         66 ATAAAAAATTTTTTAAAAGAAAAACGCT

                
        267 AAAA
          1 AAAA

        271 CCTGAGCTCT


Statistics
Matches: 96,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  92   73  0.76
  93   23  0.24

ACGTcount: A:0.46, C:0.18, G:0.13, T:0.24


Consensus pattern (93 bp):   
AAAATACACAATTATGAAACCCGAGACGTTTCGACTCAACACTGAGTCATTTTCAGTCGGAAACA
ATAAAAAATTTTTTAAAAGAAAAACGCT
Done.