Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3082

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 801
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.26


Found at i:171 original size:23 final size:23

Alignment explanation


    Indices: 59--170  Score: 188
    Period size: 23  Copynumber: 4.9  Consensus size: 23

         49 CATCATTGGG

                    *      *       
         59 TTTGGTACAAAATGGTAATGTAA
          1 TTTGGTACGAAATGGAAATGTAA

                                   
         82 TTTGGTACGAAATGGAAATGTAA
          1 TTTGGTACGAAATGGAAATGTAA

                                   
        105 TTTGGTACGAAATGGAAATGTAA
          1 TTTGGTACGAAATGGAAATGTAA

                                *  
        128 TTTGGTACGAAATGGAAATGGAA
          1 TTTGGTACGAAATGGAAATGTAA

                  *             
        151 TTTGGTTCGAAATGGAAATG
          1 TTTGGTACGAAATGGAAATG

        171 GTTCAAAAAG


Statistics
Matches: 85,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   85  1.00

ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31


Consensus pattern (23 bp):   
TTTGGTACGAAATGGAAATGTAA
Done.