Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2026

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25


Found at i:271 original size:17 final size:17

Alignment explanation


    Indices: 251--289  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

        241 AAGAGAAAAA

                             
        251 AATAGAAAAAATAATAG
          1 AATAGAAAAAATAATAG

                 ***         
        268 AATAGTGGAAATAATAG
          1 AATAGAAAAAATAATAG

                 
        285 AATAG
          1 AATAG

        290 TCGAAATTAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.62, C:0.00, G:0.18, T:0.21


Consensus pattern (17 bp):   
AATAGAAAAAATAATAG

Found at i:290 original size:17 final size:17

Alignment explanation


    Indices: 259--296  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

        249 AAAATAGAAA

                           * 
        259 AAATAATAGAATAGTGG
          1 AAATAATAGAATAGTCG

                             
        276 AAATAATAGAATAGTCG
          1 AAATAATAGAATAGTCG

                
        293 AAAT
          1 AAAT

        297 TATGGTATAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24


Consensus pattern (17 bp):   
AAATAATAGAATAGTCG
Done.