Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4080

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 355

Length: 592
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44


Found at i:427 original size:17 final size:16

Alignment explanation


    Indices: 405--437  Score: 57
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        395 CCTAGTTTTT

                             
        405 CCCTTTCCTTTTCTTTC
          1 CCCTTTCC-TTTCTTTC

                            
        422 CCCTTTCCTTTCTTTC
          1 CCCTTTCCTTTCTTTC

        438 TTTTTCGTCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58


Consensus pattern (16 bp):   
CCCTTTCCTTTCTTTC
Done.