Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3406

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 752
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39


Found at i:196 original size:20 final size:20

Alignment explanation


    Indices: 171--210  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        161 CCCATGATTG

                    *           
        171 GTCTTTGGTTTCATTGGAAT
          1 GTCTTTGGCTTCATTGGAAT

                                
        191 GTCTTTGGCTTCATTGGAAT
          1 GTCTTTGGCTTCATTGGAAT

        211 AATTTTCATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.15, C:0.12, G:0.25, T:0.47


Consensus pattern (20 bp):   
GTCTTTGGCTTCATTGGAAT
Done.