Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold926
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4168
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Found at i:1485 original size:39 final size:39
Alignment explanation
Indices: 1440--1516 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
1430 CAGTTGTTTT
1440 TAAAATACAATTTATTGCCTGATGACATATATTCTATAA
1 TAAAATACAATTTATTGCCTGATGACATATATTCTATAA
1479 TAAAATACAATTTATTGCCTGATGACATATATTCTATA
1 TAAAATACAATTTATTGCCTGATGACATATATTCTATA
1517 GTACTAACTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (39 bp):
TAAAATACAATTTATTGCCTGATGACATATATTCTATAA
Found at i:1775 original size:71 final size:71
Alignment explanation
Indices: 1659--1799 Score: 273
Period size: 71 Copynumber: 2.0 Consensus size: 71
1649 ATAATTTTGT
1659 TATTAATCTCTTTTATTTATACTTCTTACGTATTTGTATATTCATTAATAGAAGTCCAACTAATT
1 TATTAATCTCTTTTATTTATACTTCTTACGTATTTGTATATTCATTAATAGAAGTCCAACTAATT
1724 GCCAGC
66 GCCAGC
*
1730 TATTAATCTCTTTTATTTATACTTCTTCCGTATTTGTATATTCATTAATAGAAGTCCAACTAATT
1 TATTAATCTCTTTTATTTATACTTCTTACGTATTTGTATATTCATTAATAGAAGTCCAACTAATT
1795 GCCAG
66 GCCAG
1800 ATCTTCTGCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.45
Consensus pattern (71 bp):
TATTAATCTCTTTTATTTATACTTCTTACGTATTTGTATATTCATTAATAGAAGTCCAACTAATT
GCCAGC
Done.