Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2947

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 492

Length: 820
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44


Found at i:73 original size:22 final size:22

Alignment explanation


    Indices: 48--93  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 22

         38 TAATAATAAA

                               *   
         48 TTTA-TTATTCTATTTTAATTGT
          1 TTTAGTTATT-TATTTTAACTGT

                       *          
         70 TTTAGTTATTTGTTTTAACTGT
          1 TTTAGTTATTTATTTTAACTGT

              
         92 TT
          1 TT

         94 ATTCCGACTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  22   16  0.76
  23    5  0.24

ACGTcount: A:0.20, C:0.04, G:0.09, T:0.67


Consensus pattern (22 bp):   
TTTAGTTATTTATTTTAACTGT

Found at i:526 original size:18 final size:20

Alignment explanation


    Indices: 481--552  Score: 76
    Period size: 18  Copynumber: 3.6  Consensus size: 20

        471 TCATCCCCAA

                 *           *   
        481 TCTCTATTTCTTTTCTCTCAC
          1 TCTCTTTTTCTTTT-TCACAC

            *                   
        502 ACTCTTTTTCTTTTTCA-A-
          1 TCTCTTTTTCTTTTTCACAC

                        *       
        520 TCTCTTTTTCTTGTTCACAC
          1 TCTCTTTTTCTTTTTCACAC

              *          
        540 TCACTTTTTCTTT
          1 TCTCTTTTTCTTT

        553 CTTTTTCAAT


Statistics
Matches: 42,  Mismatches: 7, Indels: 5
        0.78            0.13        0.09

Matches are distributed among these distances:
  18   15  0.36
  19    2  0.05
  20   13  0.31
  21   12  0.29

ACGTcount: A:0.11, C:0.28, G:0.01, T:0.60


Consensus pattern (20 bp):   
TCTCTTTTTCTTTTTCACAC

Done.