Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2703

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 522

Length: 871
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.37


Found at i:725 original size:19 final size:20

Alignment explanation


    Indices: 696--749  Score: 74
    Period size: 19  Copynumber: 2.7  Consensus size: 20

        686 TCTCGCTTTC

                              *  
        696 TTTTCATTTTCTTTTTTTGAA
          1 TTTTC-TTTTCTTTTTTTCAA

                               *
        717 TTTTC-TTTCTTTTTTTCAT
          1 TTTTCTTTTCTTTTTTTCAA

                          
        736 TTTTCTTTTCTTTT
          1 TTTTCTTTTCTTTT

        750 GTATTTTCGC


Statistics
Matches: 30,  Mismatches: 2, Indels: 3
        0.86            0.06        0.09

Matches are distributed among these distances:
  19   17  0.57
  20    8  0.27
  21    5  0.17

ACGTcount: A:0.07, C:0.13, G:0.02, T:0.78


Consensus pattern (20 bp):   
TTTTCTTTTCTTTTTTTCAA
Done.