Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold590
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24932
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.31
Warning! 1196 characters in sequence are not A, C, G, or T
Found at i:68 original size:46 final size:46
Alignment explanation
Indices: 1--10210 Score: 10676
Period size: 46 Copynumber: 223.8 Consensus size: 46
* * *
1 GAAGATATCAGATCTTGTCTTCCTGTATTTGGTAGCGGAGGAGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
47 GAAGATAGCAGATCTTGTCTTCCTTTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** * *
93 GAAGATAGCAGAGCTTGTCTTCCTAAACTCGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
** * * *
139 GAAGATAGCAGATCTCT-TCTTCCACTATTTGGTAGCGGAGGGGATT
1 GAAGATAGCAGATCT-TGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
185 GAATATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
231 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGTGGCGGGGCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
276 GAAGATAGCAGATCTTGCCTTCCTGTATATGGCAGCGAAGGAGCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
322 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAACGGAGCG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATC
* * * * * * *
368 AAAGATAGCAGACCTTTTCTTCCTGTATTTGGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
** *
413 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
459 AAAGATAGTAGATCTTATCTTCATGTATTTGGTAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * * *
505 GAGGATAGCAGATGTTGTCTCCCTGTATTTGGTAGTGG-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** *
549 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCGGCAAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
595 GAAGATAGCAGATCTTGTCTTCCAGTATTTGG-AGCGGCGGGGCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
640 GAAGATAGCAGATCTTGCCTTCCTGTATATGGCAGCGAAGGAGCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
686 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAACGGAGCG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATC
* * * * *
732 AAAGATAGCAGACCTTGTCTTCCTGTATTTGGTAGTGG-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** *
776 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGAAGTAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * ** *
822 AAAGATAGTAGATCTTATCTTAATGTATTTGGCCGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
868 GAGGATAGCAGATCTTGTCTGCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
914 GAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* * *
960 GAAGATATCAGATCTTGTCTTCCTGTATTTGGTAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1004 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1050 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1094 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1140 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1184 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1230 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1274 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1320 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1364 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1410 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1454 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1500 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1544 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1590 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1634 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1680 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1724 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1770 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1814 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1860 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1904 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
1950 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGGAGTC-G-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-CGGAGGAGATC
* * *
1994 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
2040 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* * * * *
2086 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
2132 GAAGATATCGGATCTTGTCTGCCTGTATGTGGCAGCAGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGAGATC
*
2178 GAAGATAGCAGATCTTGTCTTCTTG-ATTTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTA-TTTGGCAGCGGAGGAGATC
* * * *
2224 AAAGATAGCATATCTTATCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
2270 GAAGATATCAGATCCTGTCTTCCTGTATTTGGCAGAGGAGGGGATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
2316 GAGGATATCGGATCTTGTCTTCTTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
2361 AAAGATAGCAGGTCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
2407 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * ** *
2453 GAGGATATCAGATCCTGTCTTCCAATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
2499 GAAGATAACAGATCTTGTCTTCCTGTATTTGGAAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
2545 GAGGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
2591 GAAGATAGCAGATCATGTCTTCCTGTATTTGGCAGCGGAGGGGATA
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
2637 GAAGATATCAGATCTTGTCTTCAC-GAATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTC-CTGTATTTGGCAGCGGAGGAGATC
**
2683 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGTTGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
2729 GAAGATAGCAGATCTTGTCTTCCTTTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
2775 GAAGATAGCAGAGCTTGTCTTCTTGAACTCGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* * **
2821 GAAGATAGCAGATCTTATATTTATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
2867 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
2913 GAAGATAGCTGATCTTGTCTTCCTGTATTTGTCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
2959 GAAGATAGCAGATCTTGTCTTCCTGTCTTTGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* * * *
3005 GAAGATATCAGATCTTGTCTTCCTATATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
3051 GAATATAGTAGATCTTGTCTTCCTGTACTTGGCAGCGGAAGG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* *
3097 GAAGATAGCAGATCTTGTCTTCATGTATTTGGTAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3143 GAGGATAGCAGATCTTGTCTTCATGTATTTGGTAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3189 GAGGATATCAGATCTTGTCTTCATGTATTTGGCAGCGGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGAGATC
* *
3235 GAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGTGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
3281 GAAGATAGCAGATC-TGATCTTCCTGTATTTGGCAGCGAAGGAGATC
1 GAAGATAGCAGATCTTG-TCTTCCTGTATTTGGCAGCGGAGGAGATC
* **
3327 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GAATAGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGA-GATC
* * *
3373 GATGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
3419 GAAGATATCAGATCTTTTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3465 GACGATAGCAGATATTGTCTTCCTGTATTTGGCAGCAGAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
3510 GAAGATATCAAATCTTGTCTTCCTGAATTTGGCAGCGAAAGG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* *
3556 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3602 GAAGATAGTAGATCTTGTCTTCCTGTATCTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
3648 GAAGATATCAAAACTTGTCTTCCTGTA----GCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3690 GAATG-TAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAAGAGATA
1 GAA-GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
3736 GAAGATAACAGAACTTGTCTTCCTGTATTTGGCAGCAGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGAGATC
* * *
3782 GAAGATATCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
3828 GAAGATAGCAGATCTTGTCTTCCTG-ATTTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** *
3873 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCCGTAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * * *
3919 GAAGATATCAGAACTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * *
3965 GAAGATATCAGATCTTGTCTGCCTGTATTTGGCAGCAGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGAGATC
* * * *
4011 GAAGATATCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGACC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4057 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4102 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4147 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4192 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4237 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4282 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4327 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4372 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4417 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4462 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4507 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4552 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4597 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4642 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4687 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4732 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4777 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4822 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4867 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4912 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
4957 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5002 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5047 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5092 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5137 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5182 GAAGATAGCAGATCTTGTCTTCCTG-ATGTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
5227 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
5273 GAAGATAACAGAACTTGTCTTCCTGTTTTTGGCAGCAGA-AAGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGA-GATC
* * *
5319 GAAGATATCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5365 GAAGATAGCAGATCTTGTCTTCC-ATATTTGGCAGCAGAGGACATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
5410 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCCGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * * *
5456 GAAGATATCAGATCTTGTCCTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5502 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5548 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5594 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5640 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5686 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5732 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5778 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5824 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5870 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5916 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
5962 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6008 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6054 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6100 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6146 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6192 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6238 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6284 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6330 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6376 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6422 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6468 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6514 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6560 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6606 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6652 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6698 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6744 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * * *
6790 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * *
6836 GAAGATATCAGATCTTGTCTTCCTGTATTTAGTAGCAGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGAGATC
*
6882 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
6928 GAAGATAGCAGATCTTGTCTTCCAG-ATTTGTCAGCAGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
6973 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
7019 GAAGATATCAGATCTTGTCTTCCTGAATTTTGCAGCGAAAGG-GATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * * *
7065 GAAGATATCAGATCTTGTCTTCCTGTATTTAGTAGCAGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGAGATC
*
7111 GAAGATAGCAGATCTTGTCTTCCTGTATTTGTCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
7157 GAAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
7203 GAAGATATCAGATCTTGTCTTCCTGTATTTGGGAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
7249 GAGGATATCTGATCTTGTCTTCCTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
7294 AAATATAGCAAATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
7340 GAAGATATCAGATCTTGTCTTCTTGTATTTGGCAGCAGAGGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
7386 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * ** *
7432 GAGGATATCAGATCTTGTCTTCCAATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
7478 GAAGATAACAGATCTTGTCTTCCTGTATTTGGAAGCGGAGCG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATC
* * * *
7524 GAGGATATCAGATATTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * ** *
7570 GAGGATATCAGATCTTGTCTTCCAATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * ** *
7616 GAGGATATCAGATCTTGTCTTCCAATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * ** *
7662 GAGGATATCAGATCTTGTCTTCCAATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
7708 GAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
7754 GAAGATAGCAGATCTTGTCTTCCAGTATTTTG-AGCGGCGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** * *
7799 GAAGATAGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGTAGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
7845 AAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGCGGAGCG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATC
*
7891 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
7936 AAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
7982 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8027 AAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
8073 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8118 AAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
8164 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
8210 GAAGATATCAGATCTTGTCTTCCTGTATTTGGTA--GTAGGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
8254 GAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8300 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCAGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8346 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGTAGTGG-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
8390 GAAGATAGCAGATCTTGTCTTCCTGTGTTTGGCAGCAGAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8435 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGACGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
8481 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
8526 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGTGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** * * *
8572 GACGATATTAGATCTTTTCTTCCTCTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
8618 GACGATAGCAGATCTTGTCTTCCTGTATCTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
8664 GAAGATATCTGATCTTGTCTTCCTGAATTTGGCAGCGAAAGG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* ** *
8710 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
8756 AAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
8802 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGC-----AGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
8842 --A-AT---AGATCTTGTCTTCCTGTATTTGGTAGTGG-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* ** *
8880 GAAGATAGCAGATCTTGTCTTCCTGTATTCGGCAGTAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
8926 AAAGATAGTAGACCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
8972 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGC-----AGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
9012 --A-AT---AGATCTTGTCTTCCTGTATTTGGTAGTGG-GG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
9050 GAAGATAGCAGATATTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * ** * **
9096 GAAGATAGTAGATCTTATCTTCATGTATTCATAGCAGATCATGTTTTCCTGTATTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATT--TGGCAG--C--G-----GAGGAGATC
* ** ** ** * ** * * ** ** * ** *
9153 GCAGCGGAGGGGATCGAAG-ATAGCAG-ATCTTGTCTTC-CTGTATTTG
1 GAAG-ATAGCAGATC-TTGTCTTCCTGTAT-TTGGCAGCGGAGGAGATC
* * ** ** ** * * ** * * *
9199 GTAG-TGGGGGGA--TTGAAGATAGCAG-ATCTTGTCTTCCTGTATTTGG-TAGTA
1 GAAGAT-AGCAGATCTTG--TCTTCCTGTAT-TTGGC-AGC-GGA---GGAGA-TC
* ** * * *
9250 GAGGGGATCAAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGC--AGAT-CTTG-TC-T-TC--C-TGTATTTGGCAGCGGAGGAGATC
* * *
9305 GAGGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGAATGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGAGATC
* *
9351 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
9397 GAAGATATCAGATCTTTTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
9443 GACGATAGCAGATCTTGCCTTCCTGTATTTGGCAGCGGATGG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGAGATC
* * *
9489 GAAGATAGCAGATCTTGTCGTCCTGTATTT-GCAGCGGAGGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
9534 GAAGATAACAGATCTTGTCTTCCTATATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
*
9579 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
9624 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTGAAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* *
9670 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGTAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
9716 GAAGATAGCAGATCTTGTCTTCCTGTATTTAGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * *
9761 GAAGACAGCAGATCTTCTCTTCCTGTATTTGGCAGCAGA-GAGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGA-GATC
* * * *
9807 GAAGACAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
9853 GAGGATAGCAGATCTTGTCTTCCTATATTTTGCAGCGAAGG-GAATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAG-ATC
** * *
9899 GAAGATATTAGATCTTGTCTTCCTGTATTTGGCAGCGGTGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * * *
9945 GACGATAGCAGATCTTTTCTCCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
9991 GAAGATATCAGATCTTGTCTTCCTGAATTTGGCAGCGATAGG-GATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGAGATC
* * *
10037 GAAGATATCAGATCTTGTCTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
10083 AAAGATAGCAGATCTTGTCTTCCTGTATCTGGCAGTGGAGG-GGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
* * * *
10128 GAAGATATCAAATCTTGTCTTTCTGTTTTTGGCAGCGGAGCG-GATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GAGATC
10174 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCGG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG
10211 GANNNNNNNN
Statistics
Matches: 9016, Mismatches: 945, Indels: 407
0.87 0.09 0.04
Matches are distributed among these distances:
34 46 0.01
37 10 0.00
38 2 0.00
40 2 0.00
41 12 0.00
42 37 0.00
43 13 0.00
44 610 0.07
45 2101 0.23
46 6042 0.67
47 73 0.01
48 5 0.00
49 2 0.00
50 3 0.00
51 6 0.00
52 2 0.00
53 6 0.00
54 1 0.00
55 9 0.00
56 6 0.00
57 8 0.00
58 11 0.00
59 2 0.00
60 5 0.00
61 2 0.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (46 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
Found at i:8953 original size:124 final size:126
Alignment explanation
Indices: 8719--8961 Score: 319
Period size: 124 Copynumber: 1.9 Consensus size: 126
8709 TGAAGATATC
*
8719 AGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATCAAAGATAGTAGATCTTATCTTCATGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATCAAAGATAGCAGATCTTATCTTCATGTAT
* * * * * * *
8784 TTGGCAGCGGAGGAGATCGAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGCAGATAAT
66 TCGGCAGCAGAGGAGATCAAAGATAGCAGACCATATCTTCATGTATTTGGCAGCAGATAAT
* ** * *
8845 AGATCTTGTCTTCCTGTATTTGGTAGT-G-GGGGATTGAAGATAGCAGATCTTGTCTTCCTGTAT
1 AGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATCAAAGATAGCAGATCTTATCTTCATGTAT
* * * *
8908 TCGGCAGTAGAGGGGATCAAAGATAGTAGACCTTATCTTCATGTATTTGGCAGC
66 TCGGCAGCAGAGGAGATCAAAGATAGCAGACCATATCTTCATGTATTTGGCAGC
8962 GGAGGAGATC
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
124 73 0.73
125 1 0.01
126 26 0.26
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (126 bp):
AGATCTTGTCTTCCTGTATTTGGCAGTAGAGGGGATCAAAGATAGCAGATCTTATCTTCATGTAT
TCGGCAGCAGAGGAGATCAAAGATAGCAGACCATATCTTCATGTATTTGGCAGCAGATAAT
Found at i:9151 original size:72 final size:72
Alignment explanation
Indices: 9054--9196 Score: 216
Period size: 72 Copynumber: 2.0 Consensus size: 72
9044 GGGATTGAAG
* *
9054 ATAGCAGATATTGTCTTCCTGTATTTGGCAGCAGAGGGGATCGAAGATAGTAGATCTTATCTTCA
1 ATAGCAGATATTGTCTTCCTGTATTTCGCAGCAGAGGGGATCGAAGATAGCAGATCTTATCTTCA
9119 TGTATTC
66 TGTATTC
* * *
9126 ATAGCAGATCA-TGTTTTCCTGTATTTCGCAGCGGAGGGGATCGAAGATAGCAGATCTTGTCTTC
1 ATAGCAGAT-ATTGTCTTCCTGTATTTCGCAGCAGAGGGGATCGAAGATAGCAGATCTTATCTTC
*
9190 CTGTATT
65 ATGTATT
9197 TGGTAGTGGG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 63 0.98
73 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (72 bp):
ATAGCAGATATTGTCTTCCTGTATTTCGCAGCAGAGGGGATCGAAGATAGCAGATCTTATCTTCA
TGTATTC
Found at i:10728 original size:46 final size:46
Alignment explanation
Indices: 10655--11759 Score: 1566
Period size: 46 Copynumber: 24.1 Consensus size: 46
10645 NNNNNNNNNN
*
10655 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * * *
10701 GATATCAGATCTTGTCTTCCTGAATTTGGCAGCGAAAGGGATTGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * *
10747 GATATCAGATCTTGTTTTCCTGTATTTGGCAGCGGAGAGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
10793 GATAGCAGATCTTGTCTTCCTGTATCTGGCAGCGAAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
10839 GATATCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * * *
10885 GGTAGCGGATCTTGTCTTCCTGTATTTGGTAGCGGAAGAGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
10931 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATCAAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
10977 GATATCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * *
11023 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATTGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * *
11069 GATAGCGGATCTTGTCTTCCTGTATTTGGCCGCGGAGGGGAACGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * *
11115 GATAGCAAATCTTGTCTTCATGTATTTGGCAGGGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11161 GATAGCAGATCTTGTGTTCCTGTATTTGG-AGCGGATGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * *
11206 GATAGCAGATCTTGTATTCTTGTATTTGGCAGCAGAGGGGATCTAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * *
11252 GATATCAGATCTTGTCTTCCTATATTTGGCAGCGAAGGAGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11298 GATAGCAGATCATGTCTTCCTGTATTTAGCAGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * **
11344 GATAGTAGATCATGTTTTCCTGTATTTGGCAGCGGAGGATATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11390 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGAGCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * * * * * * *
11436 GATAGTAGATCTTATCTTCATGTATATGACAGTGGAGGAGATCGAG
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
*
11482 GATAGCAGATCTTGTCTTCCTGTATGTGGCAGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11528 GATAGCAAATATTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11574 GATAGCATATATTGTCTTCCTGTATTTGG-AGCGGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
*
11619 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* *
11665 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
* * **
11711 GATAGCAGATCATGTTTTCCTGTATTTGGCAGCGGAGTAGATCGAA
1 GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
11757 GAT
1 GAT
11760 GGTGAATCTT
Statistics
Matches: 935, Mismatches: 122, Indels: 4
0.88 0.11 0.00
Matches are distributed among these distances:
45 84 0.09
46 851 0.91
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (46 bp):
GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAA
Found at i:13281 original size:3 final size:3
Alignment explanation
Indices: 13273--13361 Score: 99
Period size: 3 Copynumber: 28.7 Consensus size: 3
13263 ATCTAATCCT
* *
13273 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTC TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
13321 TTA TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA TTA TTA TT
1 TTA TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
13362 TACCCACTTA
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
2 1 0.01
3 68 0.91
4 3 0.04
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:15450 original size:16 final size:17
Alignment explanation
Indices: 15420--15452 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15410 GTTTAAAAGA
15420 ATTTTCAAATATATATG
1 ATTTTCAAATATATATG
*
15437 ATTTT-AAATTTATATG
1 ATTTTCAAATATATATG
15453 TTCTAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
ATTTTCAAATATATATG
Done.