Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold398
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 326082
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.31
Warning! 18148 characters in sequence are not A, C, G, or T
Found at i:13924 original size:3 final size:3
Alignment explanation
Indices: 13916--13956 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
13906 NNNNNNNNNN
13916 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13957 TCCTTTTGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:28972 original size:166 final size:167
Alignment explanation
Indices: 28773--29105 Score: 659
Period size: 166 Copynumber: 2.0 Consensus size: 167
28763 TATTAGTTTG
28773 ATATTTGATAGTTAATAATATATTTATTATATTTTTCTTTTAAATCTTTGTTTGTTTTGATATTT
1 ATATTTGATAGTTAATAATATATTTATTATATTTTTCTTTTAAATCTTTGTTTGTTTTGATATTT
28838 TGGTAGAATATATATAATTATCTATTAAAAGAAATGTTGAGGGTTAATTTTATTCGATTAGATGA
66 TGGTAGAATATATATAATTATCTATTAAAAGAAATGTTGAGGGTTAATTTTATTCGATTAGATGA
28903 ACATAGATTAAATTAACTGAAATTATTTGGGTTCAAT
131 ACATAGATTAAATTAACTGAAATTATTTGGGTTCAAT
28940 ATATTTGATA-TTAATAATATATTTATTATATTTTTCTTTTAAATCTTTGTTTGTTTTGATATTT
1 ATATTTGATAGTTAATAATATATTTATTATATTTTTCTTTTAAATCTTTGTTTGTTTTGATATTT
29004 TGGTAGAATATATATAATTATCTATTAAAAGAAATGTTGAGGGTTAATTTTATTCGATTAGATGA
66 TGGTAGAATATATATAATTATCTATTAAAAGAAATGTTGAGGGTTAATTTTATTCGATTAGATGA
29069 ACATAGATTAAATTAACTGAAATTATTTGGGTTCAAT
131 ACATAGATTAAATTAACTGAAATTATTTGGGTTCAAT
29106 TAAATTATTA
Statistics
Matches: 166, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
166 156 0.94
167 10 0.06
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (167 bp):
ATATTTGATAGTTAATAATATATTTATTATATTTTTCTTTTAAATCTTTGTTTGTTTTGATATTT
TGGTAGAATATATATAATTATCTATTAAAAGAAATGTTGAGGGTTAATTTTATTCGATTAGATGA
ACATAGATTAAATTAACTGAAATTATTTGGGTTCAAT
Found at i:30420 original size:19 final size:19
Alignment explanation
Indices: 30391--30479 Score: 60
Period size: 20 Copynumber: 4.8 Consensus size: 19
30381 TCTCTCAACA
*
30391 AAAATTACAAAATAATTAT
1 AAAATTTCAAAATAATTAT
* **
30410 TAAATTTCAAAATTTTTAT
1 AAAATTTCAAAATAATTAT
30429 AAAAGTTTCAAAAT--TTAT
1 AAAA-TTTCAAAATAATTAT
* * *
30447 --ATTTTTAAAAAAATTAT
1 AAAATTTCAAAATAATTAT
*
30464 AAAAATTTAAAAATAA
1 -AAAATTTCAAAATAA
30480 ATCTAAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
15 7 0.13
16 1 0.02
17 4 0.08
18 4 0.08
19 18 0.34
20 19 0.36
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (19 bp):
AAAATTTCAAAATAATTAT
Found at i:30458 original size:26 final size:27
Alignment explanation
Indices: 30421--30472 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
30411 AAATTTCAAA
* * *
30421 ATTTTTATAAAAGTT-TCAAAATTTAT
1 ATTTTTAAAAAAATTATAAAAATTTAT
30447 ATTTTTAAAAAAATTATAAAAATTTA
1 ATTTTTAAAAAAATTATAAAAATTTA
30473 AAAATAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
ATTTTTAAAAAAATTATAAAAATTTAT
Found at i:30486 original size:20 final size:19
Alignment explanation
Indices: 30450--30489 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
30440 AATTTATATT
*
30450 TTTAAAAAAATTATAAAAA
1 TTTAAAAAAAATATAAAAA
*
30469 TTTAAAAATAAATCTAAAAA
1 TTTAAAAA-AAATATAAAAA
30489 T
1 T
30490 AAATAAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
TTTAAAAAAAATATAAAAA
Found at i:35267 original size:52 final size:50
Alignment explanation
Indices: 35190--35317 Score: 145
Period size: 51 Copynumber: 2.5 Consensus size: 50
35180 TTTTTCTCGT
*
35190 ATTAATTTAAATTAATTAAGAGATAAATATTAAA-AATTTATATTATCATTA
1 ATTAA-TTAAATTAATTAAGAGATAAATATCAAATAA-TTATATTATCATTA
* * * * *
35241 ATTAAAATTAAAATAATTAAGTGAT-AATATCAAATGATTATTTTATCTTTA
1 ATT--AATTAAATTAATTAAGAGATAAATATCAAATAATTATATTATCATTA
35292 ATTAATTAAATTAA-TAAGAGATAAAT
1 ATTAATTAAATTAATTAAGAGATAAAT
35318 GAAAAACAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
48 7 0.11
49 13 0.20
51 26 0.40
52 17 0.26
53 2 0.03
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (50 bp):
ATTAATTAAATTAATTAAGAGATAAATATCAAATAATTATATTATCATTA
Found at i:45801 original size:179 final size:180
Alignment explanation
Indices: 45460--45808 Score: 461
Period size: 179 Copynumber: 1.9 Consensus size: 180
45450 GCACTCTCGT
* * * * *
45460 AATAAAAATAAGTAATATTATTCAAAGATATTTTAAATTAATATTATTTGAGGGTATTTTTGTTT
1 AATAAAAATAAGTAATATTATTCAAAGATATTTTAAAGTAATATTAGTGGAGGGTATTTTCGTCT
* * *
45525 TTTCACTTTAAAAAATCAAAAGAAATTATGGGAATGCCCTTCCGTAATAAAAATAAGTAAAATTA
66 TTTCACTTTAAAAAATCAAAAGAAATTATGAGAATACCCTTCCATAATAAAAATAAGTAAAATTA
* *
45590 TTCGAGGATATTTTAATCTTTTTACATAAAAAAT-AATAAGCCTTTCTGC
131 TTCGAAGATATTTTAATCTTTTCACATAAAAAATCAATAAGCCTTTCTGC
* * ** * *
45639 AATAAAAATAATTAATATTGTTTGAGGATATTTTAAAGTAATATTAGTGGATGGTATTTTCGTCT
1 AATAAAAATAAGTAATATTATTCAAAGATATTTTAAAGTAATATTAGTGGAGGGTATTTTCGTCT
* * * *
45704 TTTCACTTTACAATAATC-AAATAAATTATGAG-ATACCCTTCTATAATAAAAATAAGTAATATT
66 TTTCACTTTA-AAAAATCAAAAGAAATTATGAGAATACCCTTCCATAATAAAAATAAGTAAAATT
* *
45767 ATTCGAAGATATTTTAATCTTTTCGCTGTAAAAAATCAATAA
130 ATTCGAAGATATTTTAATCTTTTCAC-ATAAAAAATCAATAA
45809 AAATATACAT
Statistics
Matches: 145, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
178 50 0.34
179 84 0.58
180 11 0.08
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (180 bp):
AATAAAAATAAGTAATATTATTCAAAGATATTTTAAAGTAATATTAGTGGAGGGTATTTTCGTCT
TTTCACTTTAAAAAATCAAAAGAAATTATGAGAATACCCTTCCATAATAAAAATAAGTAAAATTA
TTCGAAGATATTTTAATCTTTTCACATAAAAAATCAATAAGCCTTTCTGC
Found at i:52651 original size:8 final size:8
Alignment explanation
Indices: 52633--52669 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
52623 CAGAATAAAA
52633 AAAAGTTAT
1 AAAA-TTAT
52642 AAAATTAT
1 AAAATTAT
52650 AAAATTAT
1 AAAATTAT
52658 AAAATTAT
1 AAAATTAT
52666 AAAA
1 AAAA
52670 ATGTACAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 24 0.86
9 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (8 bp):
AAAATTAT
Found at i:54257 original size:24 final size:24
Alignment explanation
Indices: 54228--54289 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
54218 GAATTCAGAT
*
54228 GAGGATGGTATTGACGGTTCTAAG
1 GAGGATGGAATTGACGGTTCTAAG
*
54252 GAGGATGGCATTGACGGTTCTAAG
1 GAGGATGGAATTGACGGTTCTAAG
54276 GAGGATGGAATTGA
1 GAGGATGGAATTGA
54290 TAGAACTGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.27, C:0.08, G:0.39, T:0.26
Consensus pattern (24 bp):
GAGGATGGAATTGACGGTTCTAAG
Found at i:59045 original size:36 final size:36
Alignment explanation
Indices: 58997--59070 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
58987 CATATAGCAG
* *
58997 TTCTACCAAGTATGCTATTATCAATGATGGGGGAAA
1 TTCTACCAAGTATGCTATAATCAATAATGGGGGAAA
*
59033 TTCTACCTAGTATGCTATAATCAATAATGGGGGAAA
1 TTCTACCAAGTATGCTATAATCAATAATGGGGGAAA
59069 TT
1 TT
59071 TTTTGTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (36 bp):
TTCTACCAAGTATGCTATAATCAATAATGGGGGAAA
Found at i:67154 original size:15 final size:16
Alignment explanation
Indices: 67119--67157 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
67109 TATTATGAAT
*
67119 ATATTTTTTTAAGTTT
1 ATATTTTTTTAAGTTC
*
67135 TTATTTTTTTAA-TTC
1 ATATTTTTTTAAGTTC
67150 ATATTTTT
1 ATATTTTT
67158 AATTAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (16 bp):
ATATTTTTTTAAGTTC
Found at i:68370 original size:22 final size:20
Alignment explanation
Indices: 68345--68392 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
68335 ATTTTCATAT
68345 ATATTATTATATTACTTATAAA
1 ATATTATTATATTA--TATAAA
* *
68367 ATATTATTATTTTATGTAAA
1 ATATTATTATATTATATAAA
68387 ATATTA
1 ATATTA
68393 AATAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.46
22 13 0.54
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATATTATTATATTATATAAA
Found at i:68490 original size:22 final size:22
Alignment explanation
Indices: 68445--68490 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
68435 CAAAACAGGT
* * * *
68445 CTTTAGCGGCGTTTTTTTAGGC
1 CTTTAGCGACGCTTTTTAACGC
68467 CTTTAGCGACGCTTTTTAACGC
1 CTTTAGCGACGCTTTTTAACGC
68489 CT
1 CT
68491 AAATGTATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (22 bp):
CTTTAGCGACGCTTTTTAACGC
Found at i:68679 original size:41 final size:41
Alignment explanation
Indices: 68587--68761 Score: 251
Period size: 42 Copynumber: 4.2 Consensus size: 41
68577 ACGTAAAAAA
* *
68587 CGCCGCTAAAGAACATGGGCTTTAGCGGCATTTTTTATTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTT-CTAAG
* *
68629 CGCCGCTAAAGAACATGGTTTTTAGCGGCGTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTCTAAG
* * *
68670 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTC-TAAG
68712 CGCCGCTAAAGAACATGGTCTTTAGCGGCAATTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGC-ATTTTTTCTAAG
*
68754 CGCTGCTA
1 CGCCGCTA
68762 TTTTGGGGAT
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
41 38 0.32
42 75 0.62
43 7 0.06
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (41 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTCTAAG
Found at i:68736 original size:83 final size:84
Alignment explanation
Indices: 68587--68761 Score: 271
Period size: 83 Copynumber: 2.1 Consensus size: 84
68577 ACGTAAAAAA
*
68587 CGCCGCTAAAGAACATGGGCTTTAGCGGCATTTTTTATTAAGCGCCGCTAAAGAACATGGTTTTT
1 CGCCGCTAAAGAACATGGGCTTTAGCGGCATTTTTTATTAAGCGCCGCTAAAGAACATGGTCTTT
*
68652 AGCGGC-GTTTTTTCTAAG
66 AGCGGCAATTTTTTCTAAG
* ** * *
68670 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTTAAGCGCCGCTAAAGAACATGGTCTTT
1 CGCCGCTAAAGAACATGGGCTTTAGCGGCATTTTTTATTAAGCGCCGCTAAAGAACATGGTCTTT
68735 AGCGGCAATTTTTTCTAAG
66 AGCGGCAATTTTTTCTAAG
*
68754 CGCTGCTA
1 CGCCGCTA
68762 TTTTGGGGAT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 65 0.79
84 17 0.21
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.33
Consensus pattern (84 bp):
CGCCGCTAAAGAACATGGGCTTTAGCGGCATTTTTTATTAAGCGCCGCTAAAGAACATGGTCTTT
AGCGGCAATTTTTTCTAAG
Found at i:75513 original size:9 final size:9
Alignment explanation
Indices: 75451--75713 Score: 258
Period size: 9 Copynumber: 29.7 Consensus size: 9
75441 TTAAAACGCC
75451 AGTTATGT-
1 AGTTATGTA
75459 A-TTATGT-
1 AGTTATGTA
75466 A-TTATGTA
1 AGTTATGTA
75474 AG-TACTGTA
1 AGTTA-TGTA
75483 AG-TACTGTA
1 AGTTA-TGTA
*
75492 AGTAATGTA
1 AGTTATGTA
75501 AGTTATGTA
1 AGTTATGTA
75510 AGTTACT-TA
1 AGTTA-TGTA
*
75519 ATTTATGTA
1 AGTTATGTA
75528 AGTTACT-TA
1 AGTTA-TGTA
*
75537 ATTTATGTA
1 AGTTATGTA
75546 AGTTATGTA
1 AGTTATGTA
* *
75555 AGATATTTA
1 AGTTATGTA
*
75564 ATTTATGTA
1 AGTTATGTA
75573 AGTTATGTA
1 AGTTATGTA
*
75582 AGTTATTTA
1 AGTTATGTA
*
75591 ATTTATGTA
1 AGTTATGTA
75600 AGTTATGTA
1 AGTTATGTA
*
75609 AGTTATTTA
1 AGTTATGTA
*
75618 ATTTATGTA
1 AGTTATGTA
75627 AGTTATGTA
1 AGTTATGTA
* *
75636 AGATAT-TT
1 AGTTATGTA
75644 AGTTTATGTA
1 AG-TTATGTA
*
75654 ATTTATGTA
1 AGTTATGTA
75663 AGTTATGTA
1 AGTTATGTA
*
75672 AGTTATTTA
1 AGTTATGTA
* *
75681 ATTTTTGTA
1 AGTTATGTA
75690 AGTTATGTA
1 AGTTATGTA
75699 A-TTAATGTA
1 AGTT-ATGTA
75708 AGTTAT
1 AGTTAT
75714 TTAATTTGTG
Statistics
Matches: 211, Mismatches: 32, Indels: 23
0.79 0.12 0.09
Matches are distributed among these distances:
7 13 0.06
8 11 0.05
9 180 0.85
10 7 0.03
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.49
Consensus pattern (9 bp):
AGTTATGTA
Found at i:79253 original size:13 final size:13
Alignment explanation
Indices: 79237--79261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79227 TTTAGATTAA
79237 ATTTTTAAAATAT
1 ATTTTTAAAATAT
79250 ATTTTTAAAATA
1 ATTTTTAAAATA
79262 CTAATTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTTAAAATAT
Found at i:80189 original size:21 final size:20
Alignment explanation
Indices: 80165--80249 Score: 53
Period size: 21 Copynumber: 4.0 Consensus size: 20
80155 ACTAGTTAAT
80165 CTAAACTGTAAACCATAAACC
1 CTAAACT-TAAACCATAAACC
* * *
80186 CTAAAATCATAAACCCTTAACAC
1 CT-AAA-CTTAAACCATAAAC-C
* * *
80209 ATAACCTTAAACCTTAAACC
1 CTAAACTTAAACCATAAACC
* *
80229 CCAACCTTTAAACCATAAACC
1 CTAAAC-TTAAACCATAAACC
80250 ATAGACCAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
20 5 0.10
21 26 0.53
22 15 0.31
23 3 0.06
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (20 bp):
CTAAACTTAAACCATAAACC
Found at i:80190 original size:14 final size:14
Alignment explanation
Indices: 80173--80252 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 14
80163 ATCTAAACTG
80173 TAAACCATAAACCC
1 TAAACCATAAACCC
*
80187 TAAAATCATAAACCC
1 T-AAACCATAAACCC
* *
80202 TTAACACAT-AACCT
1 TAAAC-CATAAACCC
*
80216 TAAACCTTAAACCC
1 TAAACCATAAACCC
* * *
80230 -CAACCTTTAAACCA
1 TAAACC-ATAAACCC
80244 TAAACCATA
1 TAAACCATA
80253 GACCAAATAT
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
13 6 0.12
14 24 0.48
15 20 0.40
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:80520 original size:115 final size:114
Alignment explanation
Indices: 80322--80845 Score: 387
Period size: 115 Copynumber: 4.6 Consensus size: 114
80312 ACCAAAACTT
* * * * *
80322 TGCGTTTTGGTTAAGATATTTTCCGACGCTTCTCAAAAAGCGCCGTTAATACTATGCTTTAGCAG
1 TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
* * * **
80387 CGATT-TCTCGTGGACGCCACTAATTCCATTATACATCAAGACTTAAACGC
66 CG-TTCCCTCATTG-CGCCACTAATTCCATTATACATCAAGACAAAAACGC
* * *
80437 TGCGTTTTTGTTAATATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAATATGCTTTAGCGG
1 TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
* * * * * * *
80502 CGTTCCCTCATAAGCGCCACTAAGTCTAATATACCTCATGA-AAAAACTC
66 CGTTCCCTCAT-TGCGCCACTAATTCCATTATACATCAAGACAAAAACGC
* * * * **** * *
80551 TGCGTTTTGGTGAGCATATTTTGTGGCGCTTTTTGCCAAGCGCCGCTAATACTATGATTTCGCGG
1 TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
** *** * ** * *
80616 TATTTTTTAATATGCGCCACTAATAAC-TGTATACATCAAGACAAAAATGT
66 CGTTCCCTCAT-TGCGCCACTAATTCCAT-TATACATCAAGACAAAAACGC
* * * * ** * * *
80666 TGCGTTTTGGTTACCAAATGTTGCGGCACTTCTCTGAAAGCGCCACTAATAGTATGCCTTAGCGG
1 TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
* * * * * *
80731 CGTGTTCCCT--TTGCGCCACTAATTCTAGTATACCTGAAGAC-CAAACTC
66 C--GTTCCCTCATTGCGCCACTAATTCCATTATACATCAAGACAAAAACGC
* * * * *
80779 TGCGTTTTGGTTCAGATATTTTACGACGCTTCTCACAAAA-CGCCGCTAATATTATGCTTTAGCG
1 TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCA-AAAAGCGCCGCTAATACTATGCTTTAGCG
80843 GCG
65 GCG
80846 CTTTCCATTA
Statistics
Matches: 309, Mismatches: 92, Indels: 20
0.73 0.22 0.05
Matches are distributed among these distances:
111 1 0.00
113 52 0.17
114 111 0.36
115 141 0.46
116 1 0.00
117 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (114 bp):
TGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATACTATGCTTTAGCGG
CGTTCCCTCATTGCGCCACTAATTCCATTATACATCAAGACAAAAACGC
Found at i:81555 original size:246 final size:246
Alignment explanation
Indices: 81147--81639 Score: 986
Period size: 246 Copynumber: 2.0 Consensus size: 246
81137 TTAGCGGCGT
81147 TTTTCCATAAACGCCGCTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGATCTTCAGA
1 TTTTCCATAAACGCCGCTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGATCTTCAGA
81212 TCTTGCGGCGCGTGATGGTAAACGCCGCTAATGATGTTCTTTTACGGCGTTTTTCGGGAAGCGCC
66 TCTTGCGGCGCGTGATGGTAAACGCCGCTAATGATGTTCTTTTACGGCGTTTTTCGGGAAGCGCC
81277 GCTAATGCCTGATATTTAGCGGCGTTTAATTTTTTGCGCCGCTAATGCGAGATTATTAACGGCGT
131 GCTAATGCCTGATATTTAGCGGCGTTTAATTTTTTGCGCCGCTAATGCGAGATTATTAACGGCGT
81342 TTTTCGTCAAAACGCCACAAAAGGTGCCGCTAAAAGCCTCATTTGGTGTAG
196 TTTTCGTCAAAACGCCACAAAAGGTGCCGCTAAAAGCCTCATTTGGTGTAG
81393 TTTTCCATAAACGCCGCTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGATCTTCAGA
1 TTTTCCATAAACGCCGCTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGATCTTCAGA
81458 TCTTGCGGCGCGTGATGGTAAACGCCGCTAATGATGTTCTTTTACGGCGTTTTTCGGGAAGCGCC
66 TCTTGCGGCGCGTGATGGTAAACGCCGCTAATGATGTTCTTTTACGGCGTTTTTCGGGAAGCGCC
81523 GCTAATGCCTGATATTTAGCGGCGTTTAATTTTTTGCGCCGCTAATGCGAGATTATTAACGGCGT
131 GCTAATGCCTGATATTTAGCGGCGTTTAATTTTTTGCGCCGCTAATGCGAGATTATTAACGGCGT
81588 TTTTCGTCAAAACGCCACAAAAGGTGCCGCTAAAAGCCTCATTTGGTGTAG
196 TTTTCGTCAAAACGCCACAAAAGGTGCCGCTAAAAGCCTCATTTGGTGTAG
81639 T
1 T
81640 AATCATTCAT
Statistics
Matches: 247, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 247 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (246 bp):
TTTTCCATAAACGCCGCTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGATCTTCAGA
TCTTGCGGCGCGTGATGGTAAACGCCGCTAATGATGTTCTTTTACGGCGTTTTTCGGGAAGCGCC
GCTAATGCCTGATATTTAGCGGCGTTTAATTTTTTGCGCCGCTAATGCGAGATTATTAACGGCGT
TTTTCGTCAAAACGCCACAAAAGGTGCCGCTAAAAGCCTCATTTGGTGTAG
Found at i:89419 original size:17 final size:18
Alignment explanation
Indices: 89378--89422 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
89368 CATAATTTGG
89378 AATAAAAT-ATGTAAATA
1 AATAAAATAATGTAAATA
*
89395 AATGAAATAATG-AAA-A
1 AATAAAATAATGTAAATA
89411 CAATAAAATAAT
1 -AATAAAATAAT
89423 AATAATAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 1 0.04
17 20 0.83
18 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (18 bp):
AATAAAATAATGTAAATA
Found at i:98609 original size:205 final size:205
Alignment explanation
Indices: 98257--98671 Score: 812
Period size: 205 Copynumber: 2.0 Consensus size: 205
98247 GTCAATACTA
98257 GAATTTCAAAACCTTAAACACAAAGTTTTGTAGGACTATCTTTGAATAGGTGTTGTGGAGGTGCT
1 GAATTTCAAAACCTTAAACACAAAGTTTTGTAGGACTATCTTTGAATAGGTGTTGTGGAGGTGCT
98322 TTAGCCTTTTCTACACGTAACTATACTCTTGAATCCAGATTTGATTATGAGATCGTTCCTTAGTT
66 TTAGCCTTTTCTACACGTAACTATACTCTTGAATCCAGATTTGATTATGAGATCGTTCCTTAGTT
98387 TTAAGATTTTCCCTTACATTTGTCTTAGGATTAGCCTTAGAACTTTGGGTGATAGGTGACTAGTC
131 TTAAGATTTTCCCTTACATTTGTCTTAGGATTAGCCTTAGAACTTTGGGTGATAGGTGACTAGTC
98452 GACAAAACCC
196 GACAAAACCC
*
98462 GAATTTCAAAACCTTAAACACAAAGTTTTGTAGGACTATCTTTGAATAGGTGTTGTGGGGGTGCT
1 GAATTTCAAAACCTTAAACACAAAGTTTTGTAGGACTATCTTTGAATAGGTGTTGTGGAGGTGCT
98527 TTAGCCTTTTCTACACGTAACTATACTCTTGAATCCAGATTTGATTATGAGATCGTTCCTTAGTT
66 TTAGCCTTTTCTACACGTAACTATACTCTTGAATCCAGATTTGATTATGAGATCGTTCCTTAGTT
*
98592 TTAAGATTTTCCCTTACATTTGTCTTAGGATTAGCCTTAGAACTTTGGGTGATTGGTGACTAGTC
131 TTAAGATTTTCCCTTACATTTGTCTTAGGATTAGCCTTAGAACTTTGGGTGATAGGTGACTAGTC
98657 GACAAAACCC
196 GACAAAACCC
98667 GAATT
1 GAATT
98672 GATTAATGAC
Statistics
Matches: 208, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
205 208 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (205 bp):
GAATTTCAAAACCTTAAACACAAAGTTTTGTAGGACTATCTTTGAATAGGTGTTGTGGAGGTGCT
TTAGCCTTTTCTACACGTAACTATACTCTTGAATCCAGATTTGATTATGAGATCGTTCCTTAGTT
TTAAGATTTTCCCTTACATTTGTCTTAGGATTAGCCTTAGAACTTTGGGTGATAGGTGACTAGTC
GACAAAACCC
Found at i:103353 original size:16 final size:14
Alignment explanation
Indices: 103330--103376 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 14
103320 GACAACCCAA
103330 TTTTATTTTTATTT
1 TTTTATTTTTATTT
103344 TATGTTATTTATATATTT
1 T-T-TTATTT-T-TATTT
103362 TTTTATTTTTATTT
1 TTTTATTTTTATTT
103376 T
1 T
103377 CTTGCATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.24
15 2 0.07
16 12 0.41
17 2 0.07
18 6 0.21
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (14 bp):
TTTTATTTTTATTT
Found at i:104458 original size:11 final size:12
Alignment explanation
Indices: 104443--104484 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
104433 TTCTTAAGTA
104443 AAAAAGAAAAA-
1 AAAAAGAAAAAG
104454 AAAAAGAAGAAAAG
1 AAAAAG-A-AAAAG
104468 AAAAAGAAAAAG
1 AAAAAGAAAAAG
104480 AAAAA
1 AAAAA
104485 ATATTAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.21
12 11 0.39
13 5 0.18
14 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:105984 original size:21 final size:21
Alignment explanation
Indices: 105958--106005 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
105948 CTCCAAAACA
105958 AGGGAAAATGGGTTACATTTT
1 AGGGAAAATGGGTTACATTTT
105979 AGGGAAAATGGGTTACATTTT
1 AGGGAAAATGGGTTACATTTT
106000 AGGGAA
1 AGGGAA
106006 CATGTCTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.29
Consensus pattern (21 bp):
AGGGAAAATGGGTTACATTTT
Found at i:106015 original size:21 final size:21
Alignment explanation
Indices: 105958--106015 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
105948 CTCCAAAACA
*
105958 AGGGAAAATGGGTTACATTTT
1 AGGGAAAATGGCTTACATTTT
*
105979 AGGGAAAATGGGTTACATTTT
1 AGGGAAAATGGCTTACATTTT
* *
106000 AGGGAACATGTCTTAC
1 AGGGAAAATGGCTTAC
106016 CCTTTCAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (21 bp):
AGGGAAAATGGCTTACATTTT
Found at i:106455 original size:34 final size:35
Alignment explanation
Indices: 106397--106463 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
106387 CAAACACCAG
106397 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
106432 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
106464 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:106763 original size:62 final size:62
Alignment explanation
Indices: 106666--106791 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
106656 CGTGTGCATC
106666 CTGGAAACAACTCTATATGCTTGATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCT
1 CTGGAAACAACTCTATATGCTTGATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCT
106728 CTGGAAACAACTCTATATGCTTGATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCT
1 CTGGAAACAACTCTATATGCTTGATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCT
106790 CT
1 CT
106792 CCTAAGTATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.17, C:0.28, G:0.14, T:0.40
Consensus pattern (62 bp):
CTGGAAACAACTCTATATGCTTGATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCT
Found at i:106857 original size:66 final size:66
Alignment explanation
Indices: 106751--106883 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
106741 TATATGCTTG
106751 ATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCTCTCCTAAGTATAGAAACATGAATTTA
1 ATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCTCTCCTAAGTATAGAAACATGAATTTA
106816 A
66 A
*
106817 ATTTTGGCTCGTTTTTCGCTCCTTTCGCTCCCAATTGCTCTCCTAAGTATAGAAACATGAATTTA
1 ATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCTCTCCTAAGTATAGAAACATGAATTTA
106882 A
66 A
106883 A
1 A
106884 GGATCAGGAG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (66 bp):
ATTTTGGCTCGTTTTTCGCTCCTTTCACTCCCAATTGCTCTCCTAAGTATAGAAACATGAATTTA
A
Found at i:107355 original size:66 final size:66
Alignment explanation
Indices: 107274--107402 Score: 240
Period size: 66 Copynumber: 2.0 Consensus size: 66
107264 GTTGTAATTG
* *
107274 TCCTAGACATTAAACTATTAGGATTGGTCTCCTATGAATGGATCATGTCATCTATTTTAGATTTT
1 TCCTAGACATTAAACTACTAGGATTGGTCTCCCATGAATGGATCATGTCATCTATTTTAGATTTT
107339 T
66 T
107340 TCCTAGACATTAAACTACTAGGATTGGTCTCCCATGAATGGATCATGTCATCTATTTTAGATT
1 TCCTAGACATTAAACTACTAGGATTGGTCTCCCATGAATGGATCATGTCATCTATTTTAGATT
107403 CTTCATCACC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (66 bp):
TCCTAGACATTAAACTACTAGGATTGGTCTCCCATGAATGGATCATGTCATCTATTTTAGATTTT
T
Found at i:109754 original size:23 final size:23
Alignment explanation
Indices: 109724--109769 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
109714 ATAGTGTAAT
109724 CAAATTGATTCCTACGTTAAGCA
1 CAAATTGATTCCTACGTTAAGCA
109747 CAAATTGATTCCTACGTTAAGCA
1 CAAATTGATTCCTACGTTAAGCA
109770 TTGGATCACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (23 bp):
CAAATTGATTCCTACGTTAAGCA
Found at i:112733 original size:94 final size:96
Alignment explanation
Indices: 112600--112826 Score: 298
Period size: 94 Copynumber: 2.4 Consensus size: 96
112590 TCCTGTTTAT
* * * * *
112600 GGTTTTTAAATAAAAAATCAATTAAATTAGGGTTTAGGGTTTCTTGAGTAATTTAATTAAAATTT
1 GGTTTTTAAGT-AAAAATCAAATAAATTAGGGTTTAGGGTTACTTCAGTAAATTAATTAAAA-TT
**
112665 TTTTAAAAATTAGA-TTAGGGTTTA-GTGTTAA
64 TTAAAAAAATTAGATTTAGGGTTTAGGTGTTAA
* *
112696 GGTTTTTAAG-GAAAATCAAATAAATTAGGGTTTAGGGTTACTTCAGTAAATTAATTATAATTTT
1 GGTTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTCAGTAAATTAATTAAAATTTT
* *
112760 AAAAAAATTAGATTTAGGGTTTAGGGTTTTAG
66 AAAAAAATTAGATTTAGGGTTTA-GGTGTTAA
112792 GGTTTTTAAGTAAAAACTCAAATAAATTAGGGTTT
1 GGTTTTTAAGTAAAAA-TCAAATAAATTAGGGTTT
112827 GGGGATTAGG
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
93 14 0.12
94 54 0.47
96 24 0.21
97 4 0.04
98 18 0.16
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (96 bp):
GGTTTTTAAGTAAAAATCAAATAAATTAGGGTTTAGGGTTACTTCAGTAAATTAATTAAAATTTT
AAAAAAATTAGATTTAGGGTTTAGGTGTTAA
Found at i:112853 original size:105 final size:94
Alignment explanation
Indices: 112530--112826 Score: 287
Period size: 94 Copynumber: 3.1 Consensus size: 94
112520 TAAATAAGGG
* * * * * * * *
112530 ATTAGGGTTTAGGGTTTCTCAATTAAATTAATTATAAAATTTT--CAAAATTGGATTA-AGTTTC
1 ATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-AAATTTTTAAAAAAATTAGATTAGGGTTTA
* * * *
112592 CTGTTTATGGTTTTTAAATAAAAAATCAATTAA
65 GTG-TTAAGGTTTTT-AA-GAAAAATCAAATAA
* * * **
112625 ATTAGGGTTTAGGGTTTCTTGAGTAATTTAATTAAAATTTTTTTAAAAATTAGATTAGGGTTTAG
1 ATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAAAATTTTTAAAAAAATTAGATTAGGGTTTAG
*
112690 TGTTAAGGTTTTTAAGGAAAATCAAATAA
66 TGTTAAGGTTTTTAAGAAAAATCAAATAA
* *
112719 ATTAGGGTTTAGGGTTACTTCAGTAAATTAATTATAA-TTTTAAAAAAATTAGATTTAGGGTTTA
1 ATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAAAATTTTTAAAAAAATTAGA-TTAGGGTTTA
* *
112783 GGGTTTTAGGGTTTTTAAGTAAAAACTCAAATAA
65 --GTGTTAAGGTTTTTAAG-AAAAA-TCAAATAA
112817 ATTAGGGTTT
1 ATTAGGGTTT
112827 GGGGATTAGG
Statistics
Matches: 171, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
93 14 0.08
94 61 0.36
95 32 0.19
96 36 0.21
97 10 0.06
98 18 0.11
ACGTcount: A:0.37, C:0.04, G:0.17, T:0.42
Consensus pattern (94 bp):
ATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAAAATTTTTAAAAAAATTAGATTAGGGTTTAG
TGTTAAGGTTTTTAAGAAAAATCAAATAA
Found at i:113090 original size:126 final size:126
Alignment explanation
Indices: 112865--113283 Score: 678
Period size: 126 Copynumber: 3.3 Consensus size: 126
112855 TTGTTAATTT
* *
112865 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGAAGAC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGAC
*
112930 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGTAAAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTG
* *
112991 AAAGAAGCTCTCACGTGGACGCACTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGAC
113056 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTG
* * *
113117 AAAGAAACTCCCACGTAGACGCACTTTTGCTACAGTAGCTCCTT-AAAAAATAATTTCGAGCAGA
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCT-CTTGAAAAAATAATTTCGAGAAGA
* * * * *
113181 CGTTTATGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAACGAAAGTACTA
65 CGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTG
***
113243 AAAGAAGCTCCCACGTGGACGTGTTTTTGCTACAGTAGCTC
1 AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTC
113284 ATGTTTGGCC
Statistics
Matches: 273, Mismatches: 19, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
125 1 0.00
126 269 0.99
127 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGAAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTG
Found at i:114323 original size:21 final size:22
Alignment explanation
Indices: 114293--114333 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
114283 GCGGCTGTTG
*
114293 TGGTTGCTCCAGT-GGGGATTC
1 TGGTTCCTCCAGTAGGGGATTC
*
114314 TGGTTCCTCCGGTAGGGGAT
1 TGGTTCCTCCAGTAGGGGAT
114334 CTAGTTGTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.10, C:0.20, G:0.39, T:0.32
Consensus pattern (22 bp):
TGGTTCCTCCAGTAGGGGATTC
Found at i:116164 original size:16 final size:16
Alignment explanation
Indices: 116129--116162 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
116119 TACATCATCC
116129 AAACAAATAAAATATA
1 AAACAAATAAAATATA
*
116145 AAACGAATAAAAT-TA
1 AAACAAATAAAATATA
116160 AAA
1 AAA
116163 ACATTCATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (16 bp):
AAACAAATAAAATATA
Found at i:116293 original size:34 final size:34
Alignment explanation
Indices: 116255--116361 Score: 159
Period size: 34 Copynumber: 3.2 Consensus size: 34
116245 ATTAAAATAT
116255 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
1 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
*
116289 ATGTGTACATAGATATAT-TA--TA-AAAGGTAAAA
1 ATGTGTATAT-G-TATATGTACTTACAAAGGTAAAA
116321 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
1 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
116355 ATGTGTA
1 ATGTGTA
116362 CCTAAATTGA
Statistics
Matches: 65, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
30 5 0.08
31 3 0.05
32 19 0.29
33 4 0.06
34 26 0.40
35 3 0.05
36 5 0.08
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.35
Consensus pattern (34 bp):
ATGTGTATATGTATATGTACTTACAAAGGTAAAA
Found at i:118129 original size:95 final size:95
Alignment explanation
Indices: 117966--118816 Score: 1360
Period size: 95 Copynumber: 9.0 Consensus size: 95
117956 AATATTTGAA
*
117966 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTA-CTGGCTTCAATGTACTCCACTGT
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATC-GGCTTCAATGTACTCCACTGT
* *
118030 AGTCACAGGAAGGTAAAATCTGCCATCTTCG
65 AGTCACAGGGAGGTAAAATCTGCCATCTTTG
* * * *
118061 ATCTTCAATCTATTCCACCGCCAACCAGGAAGATAGAATTATCGGCTTCAATGTACTCCATTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
118126 GTCACAGGGAGGTAAAATCTGCCATC----
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
* *
118152 -T-TT-AATCTATTCCACTGCCAACCAGGGAGATAGAATTATCAGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* * *
118214 GTTACAGGGAGGTAAAATCTACCAT-TTTT
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
*
118243 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCGATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
*
118308 GTCACAGGGAGGTAAAATTTGCCATCTTTG
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
* *
118338 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCGATGTACTCTACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
*
118403 GTCACAGGGAGGTAAAATCTGCCATATTTG
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
*
118433 ATCTTCAATCTATTCTACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* * *
118498 GTTACAGGAAGGTAAAATCTGCCATCTTTA
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
*
118528 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTATA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
*
118593 GTTACAGGGAGGTAAAATCTGCCATCTTTG
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
* * *
118623 ATCTTCAATCTATTCCACTGCCAACTAGGGAGATAGAATTATCGACTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
* * *
118688 GTTACAGAGAGGTAAAATCTGCCATATTTG
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
*
118718 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGTTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
118783 GTCACAGGGAGGTAAAATCTGCCATCTTTG
66 GTCACAGGGAGGTAAAATCTGCCATCTTTG
118813 ATCT
1 ATCT
118817 GCCCCGCTGT
Statistics
Matches: 703, Mismatches: 44, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
88 78 0.11
89 2 0.00
90 1 0.00
92 1 0.00
93 2 0.00
94 78 0.11
95 540 0.77
96 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATCTTTG
Found at i:118211 original size:43 final size:43
Alignment explanation
Indices: 118063--118211 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 43
118053 CATCTTCGAT
* * * *
118063 CTTCAATCTATTCCACCGCCAACCAGGAAGATAGAATTATCGG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCAG
* * * * * * ** *
118106 CTTCAATGTACTCCATTG-TAGTCACAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-TATCAG
* *
118151 CTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCAG
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCAG
*
118194 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
118212 TAGTTACAGG
Statistics
Matches: 75, Mismatches: 27, Indels: 8
0.68 0.25 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.44
44 23 0.31
45 17 0.23
46 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCAG
Found at i:118304 original size:43 final size:43
Alignment explanation
Indices: 118245--118780 Score: 152
Period size: 43 Copynumber: 11.4 Consensus size: 43
118235 CCATTTTTAT
* *
118245 CTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGG
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
* * * * *
118288 CTTCGATGTACTCCACTG-TAGTCACAGGGAGGTAAAATTTGCCATCTTTGAT
1 CTTCAATGTACTCCACTGCTA-AC-CAGGGAGATAGAA-TT---ATC---G-G
* *
118340 CTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGG
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
* * * * * * *
118383 CTTCGATGTACTCTACTG-TAGTCACAGGGAGGTAAAATCTGCCATATTTGAT
1 CTTCAATGTACTCCACTGCTA-AC-CAGGGAGATAGAA--T----TA-TCG-G
* * *
118435 CTTCAATCTATTCTACTGCTAACCAGGGAGATAGAATTATCGG
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
* * * **
118478 CTTCAATGTACTCCACTG-TAGTTA-CAGGAAGGTAAAATCTGCCATCTTTAAT
1 CTTCAATGTACTCCACTGCTA---ACCAGGGAGATAGAAT-T---ATC----GG
* *
118530 CTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGG
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
* * * *
118573 CTTCAATGTACTCCACTATAG-TTA-CAGGGAGGTAAAATCTGCCATCTTTGAT
1 CTTCAATGTACTCCAC--T-GCTAACCAGGGAGATAGAAT-T---ATC---G-G
* * * * *
118625 CTTCAATCTATTCCACTGCCAACTAGGGAGATAGAATTATCGA
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
* * * * *
118668 CTTCAATGTACTCCACTG-TAGTTA-CAGAGAGGTAAAATCTGCCATATTTGAT
1 CTTCAATGTACTCCACTGCTA---ACCAGGGAGATAGAA--T----TA-TCG-G
* *
118720 CTTCAATCTATTCCACTGCTAACCAGGGAGATAGAATTATCGG
1 CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
*
118763 TTTCAATGTACTCCACTG
1 CTTCAATGTACTCCACTG
118781 TAGTCACAGG
Statistics
Matches: 353, Mismatches: 79, Indels: 122
0.64 0.14 0.22
Matches are distributed among these distances:
42 7 0.02
43 91 0.26
44 60 0.17
45 13 0.04
46 3 0.01
47 9 0.03
48 9 0.03
49 3 0.01
50 12 0.03
51 60 0.17
52 78 0.22
53 8 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTCAATGTACTCCACTGCTAACCAGGGAGATAGAATTATCGG
Found at i:118930 original size:88 final size:88
Alignment explanation
Indices: 118821--119111 Score: 501
Period size: 88 Copynumber: 3.3 Consensus size: 88
118811 TGATCTGCCC
** *
118821 CGCTGTCAATACAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCA
1 CGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
*
118886 AGGTTTGTGTCTTCGACCTACTT
66 AGGTTTGTGTCTTCGACCTGCTT
*
118909 CGCTGCCAATACAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
1 CGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
118974 AGGTTTGTGTCTTCGACCTGCTT
66 AGGTTTGTGTCTTCGACCTGCTT
* *
118997 CGCTATCAATACAGGAAGGCAAGATCTATTATCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
1 CGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
* *
119062 AGATTTGCGTCTTCGACCTGCTT
66 AGGTTTGTGTCTTCGACCTGCTT
119085 CGCTGTCAATACAGGAAGGCAAGATCT
1 CGCTGTCAATACAGGAAGGCAAGATCT
119112 GTAACTTCAT
Statistics
Matches: 192, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 192 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (88 bp):
CGCTGTCAATACAGGAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCA
AGGTTTGTGTCTTCGACCTGCTT
Found at i:119105 original size:44 final size:44
Alignment explanation
Indices: 118827--119109 Score: 171
Period size: 44 Copynumber: 6.4 Consensus size: 44
118817 GCCCCGCTGT
* * *
118827 CAATACAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTA-
1 CAATACAGGAAGGCAAGATTTG-TGTCTTCAACCAGCTTCGCTAC
* * * *
118871 C-A-ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTA-CTTCGCTGC
1 CAATACAG-GA-AGGCAAGATTTGTGTCTTCAACC-AGCTTCGCTAC
118915 CAATACAGGAAGGCAAGATCTAT-TGTCTTCAACCAGC-TC-C-AC
1 CAATACAGGAAGGCAAGAT-T-TGTGTCTTCAACCAGCTTCGCTAC
* * * * *
118957 CACA-ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTAT
1 CA-ATACAG-GA-AGGCAAGATTTGTGTCTTCAACCAGCTTCGCTAC
*
119003 CAATACAGGAAGGCAAGATCTAT-TATCTTCAACCAGC-TC-C-AC
1 CAATACAGGAAGGCAAGAT-T-TGTGTCTTCAACCAGCTTCGCTAC
* * * * **
119045 CACA-ACCGAGAGAGGCAAGATTTGCGTCTTCGACCTGCTTCGCTGT
1 CA-ATACAG-GA-AGGCAAGATTTGTGTCTTCAACCAGCTTCGCTAC
119091 CAATACAGGAAGGCAAGAT
1 CAATACAGGAAGGCAAGAT
119110 CTGTAACTTC
Statistics
Matches: 182, Mismatches: 30, Indels: 54
0.68 0.11 0.20
Matches are distributed among these distances:
42 17 0.09
43 50 0.27
44 64 0.35
45 35 0.19
46 16 0.09
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (44 bp):
CAATACAGGAAGGCAAGATTTGTGTCTTCAACCAGCTTCGCTAC
Found at i:120376 original size:23 final size:22
Alignment explanation
Indices: 120337--120386 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
120327 TCACCTTGGC
* *
120337 CTTTCCTTTTTTCCTTTCTTTT
1 CTTTTCTTCTTTCCTTTCTTTT
*
120359 CTTTTCTTCTTTCTCTTTGTTTT
1 CTTTTCTTCTTTC-CTTTCTTTT
*
120382 TTTTT
1 CTTTT
120387 AAATTTTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (22 bp):
CTTTTCTTCTTTCCTTTCTTTT
Found at i:125506 original size:34 final size:34
Alignment explanation
Indices: 125468--125574 Score: 159
Period size: 34 Copynumber: 3.2 Consensus size: 34
125458 ATTAAAATAT
125468 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
1 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
*
125502 ATGTGTACATAGATATAT-TA--TA-AAAGGTAAAA
1 ATGTGTATAT-G-TATATGTACTTACAAAGGTAAAA
125534 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
1 ATGTGTATATGTATATGTACTTACAAAGGTAAAA
125568 ATGTGTA
1 ATGTGTA
125575 CATAGATATA
Statistics
Matches: 65, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
30 5 0.08
31 3 0.05
32 19 0.29
33 4 0.06
34 26 0.40
35 3 0.05
36 5 0.08
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.35
Consensus pattern (34 bp):
ATGTGTATATGTATATGTACTTACAAAGGTAAAA
Found at i:125530 original size:32 final size:33
Alignment explanation
Indices: 125492--125591 Score: 134
Period size: 34 Copynumber: 3.0 Consensus size: 33
125482 ATGTACTTAC
125492 AAAGGTAAAAATGTGTACATAGATATAT-TATA
1 AAAGGTAAAAATGTGTACATAGATATATATATA
* *
125524 AAAGGTAAAAATGTGTATAT-G-TATATGTACTTA
1 AAAGGTAAAAATGTGTACATAGATATATATA--TA
125557 CAAAGGTAAAAATGTGTACATAGATATATATATA
1 -AAAGGTAAAAATGTGTACATAGATATATATATA
125591 A
1 A
125592 TACACATATT
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
30 5 0.08
31 3 0.05
32 19 0.32
33 3 0.05
34 21 0.36
35 1 0.02
36 7 0.12
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (33 bp):
AAAGGTAAAAATGTGTACATAGATATATATATA
Found at i:127071 original size:7 final size:7
Alignment explanation
Indices: 127059--127083 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
127049 TATTAGTTAT
127059 ATACATA
1 ATACATA
127066 ATACATA
1 ATACATA
127073 ATACATA
1 ATACATA
127080 ATAC
1 ATAC
127084 TAAATACCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:128277 original size:11 final size:11
Alignment explanation
Indices: 128263--128308 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
128253 TTTTTTAAAT
128263 AGGAATTTGAG
1 AGGAATTTGAG
128274 AGGAATTTGAG
1 AGGAATTTGAG
128285 A-GAATATT-AG
1 AGGAAT-TTGAG
*
128295 AGAGAAATTGAG
1 AG-GAATTTGAG
128307 AG
1 AG
128309 AAATGATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.23
11 16 0.53
12 7 0.23
ACGTcount: A:0.43, C:0.00, G:0.33, T:0.24
Consensus pattern (11 bp):
AGGAATTTGAG
Found at i:128307 original size:10 final size:10
Alignment explanation
Indices: 128269--128312 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
128259 AAATAGGAAT
*
128269 TTGAGAGGAAT
1 TTGAGA-GAAA
128280 TTGAGAGAATA
1 TTGAGAGAA-A
128291 TTAGAGAGAAA
1 TT-GAGAGAAA
128302 TTGAGAGAAA
1 TTGAGAGAAA
128312 T
1 T
128313 GATTTAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 12 0.40
11 11 0.37
12 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:136961 original size:5 final size:5
Alignment explanation
Indices: 136951--136984 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
136941 TGTACCCATG
136951 TATTA TATTA TATTA TATTA TATTA TATTA TATT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATT
136985 TCACATGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:138531 original size:16 final size:16
Alignment explanation
Indices: 138510--138544 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
138500 ATGGCTGCTA
138510 CAATGTTTACATCTAT
1 CAATGTTTACATCTAT
138526 CAATGTTTACATCTAT
1 CAATGTTTACATCTAT
138542 CAA
1 CAA
138545 AACATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (16 bp):
CAATGTTTACATCTAT
Found at i:145729 original size:12 final size:12
Alignment explanation
Indices: 145712--145738 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
145702 ATAAAAAAAT
145712 AAAATATATAAC
1 AAAATATATAAC
145724 AAAATATATAAC
1 AAAATATATAAC
145736 AAA
1 AAA
145739 TAAAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (12 bp):
AAAATATATAAC
Found at i:146781 original size:21 final size:20
Alignment explanation
Indices: 146742--146783 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
146732 TTTATAGATA
*
146742 CCTCTATTTCTGTTGAAAAT
1 CCTCTATTTCTGTTAAAAAT
*
146762 CCTCTATTTTCTTTTAAAAAT
1 CCTCTA-TTTCTGTTAAAAAT
146783 C
1 C
146784 AACAGTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.48
Consensus pattern (20 bp):
CCTCTATTTCTGTTAAAAAT
Found at i:148357 original size:7 final size:7
Alignment explanation
Indices: 148347--148374 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
148337 GAAAAAAAGT
148347 AAAAATA
1 AAAAATA
148354 AAAAATA
1 AAAAATA
148361 AAAAATA
1 AAAAATA
148368 AAAAATA
1 AAAAATA
148375 TGGACGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:154460 original size:38 final size:37
Alignment explanation
Indices: 154409--154483 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 37
154399 TTTTTAAATA
154409 TTTTATTTTGAATTGCATT-AAT-TAATATAAAATAGTATT
1 TTTTATTTTGAATT--ATTGAATATAAT-TAAAATA-TATT
154448 TTTTA-TTTGAATTATTGAATATAATTAAAATATATT
1 TTTTATTTTGAATTATTGAATATAATTAAAATATATT
154484 AACTTACTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
36 7 0.21
37 10 0.29
38 12 0.35
39 5 0.15
ACGTcount: A:0.40, C:0.01, G:0.07, T:0.52
Consensus pattern (37 bp):
TTTTATTTTGAATTATTGAATATAATTAAAATATATT
Found at i:160721 original size:25 final size:25
Alignment explanation
Indices: 160687--160736 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
160677 TGGTTTTATA
160687 TGTTAATGACATACTGATTGTCAAT
1 TGTTAATGACATACTGATTGTCAAT
160712 TGTTAATGACATACTGATTGTCAAT
1 TGTTAATGACATACTGATTGTCAAT
160737 AATAAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (25 bp):
TGTTAATGACATACTGATTGTCAAT
Found at i:161745 original size:11 final size:11
Alignment explanation
Indices: 161729--161769 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
161719 TATTGGTCAA
*
161729 TCTTCCTCTAG
1 TCTTCCTCGAG
161740 TCTTCCTCGAG
1 TCTTCCTCGAG
*
161751 TCTTCTTCGAG
1 TCTTCCTCGAG
*
161762 TCTCCCTC
1 TCTTCCTC
161770 ACATGTCGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.07, C:0.39, G:0.12, T:0.41
Consensus pattern (11 bp):
TCTTCCTCGAG
Found at i:163253 original size:56 final size:56
Alignment explanation
Indices: 163160--163334 Score: 242
Period size: 56 Copynumber: 3.1 Consensus size: 56
163150 TAAAAAAATT
* * * * * * * *
163160 AATTGAGAATTGAGAATTAAGAATTGAGGATTGAGGATTGAGGATCGAGAATTGAG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAATTGAG
*
163216 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAAATGAG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAATTGAG
* *
163272 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGTATTGGG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAATTGAG
*
163328 TATTGAG
1 AATTGAG
163335 TATTGAGTTG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 106 1.00
ACGTcount: A:0.41, C:0.01, G:0.30, T:0.29
Consensus pattern (56 bp):
AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAATTGAG
Found at i:163342 original size:7 final size:7
Alignment explanation
Indices: 163160--163341 Score: 148
Period size: 7 Copynumber: 26.0 Consensus size: 7
163150 TAAAAAAATT
163160 AATTGAG
1 AATTGAG
163167 AATTGAG
1 AATTGAG
*
163174 AATTAAG
1 AATTGAG
163181 AATTGAG
1 AATTGAG
*
163188 GATTGAG
1 AATTGAG
*
163195 GATTGAG
1 AATTGAG
* *
163202 GATCGAG
1 AATTGAG
163209 AATTGAG
1 AATTGAG
163216 AATTGAG
1 AATTGAG
* *
163223 AAATGAA
1 AATTGAG
163230 AATTGAG
1 AATTGAG
*
163237 GATTGAG
1 AATTGAG
*
163244 AATTTAG
1 AATTGAG
* *
163251 GATTAAG
1 AATTGAG
*
163258 GATTGAG
1 AATTGAG
*
163265 AAATGAG
1 AATTGAG
163272 AATTGAG
1 AATTGAG
* *
163279 AAATGAA
1 AATTGAG
163286 AATTGAG
1 AATTGAG
*
163293 GATTGAG
1 AATTGAG
*
163300 AATTTAG
1 AATTGAG
* *
163307 GATTAAG
1 AATTGAG
*
163314 GATTGAG
1 AATTGAG
* *
163321 TATTGGG
1 AATTGAG
*
163328 TATTGAG
1 AATTGAG
*
163335 TATTGAG
1 AATTGAG
163342 TTGAGAAGAA
Statistics
Matches: 143, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 143 1.00
ACGTcount: A:0.40, C:0.01, G:0.30, T:0.29
Consensus pattern (7 bp):
AATTGAG
Found at i:173738 original size:21 final size:21
Alignment explanation
Indices: 173714--173756 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
173704 ATTTTATTAC
173714 TTTTAAATATTATTTG-ATAAA
1 TTTTAAA-ATTATTTGTATAAA
*
173735 TTTTCAAATTATTTGTATAAA
1 TTTTAAAATTATTTGTATAAA
173756 T
1 T
173757 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTTAAAATTATTTGTATAAA
Found at i:174097 original size:15 final size:14
Alignment explanation
Indices: 174072--174101 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
174062 AACAATTATT
174072 TAAAATATAAAAAA
1 TAAAATATAAAAAA
174086 TAAAACTATAAAAAA
1 TAAAA-TATAAAAAA
174101 T
1 T
174102 TATAAACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAATATAAAAAA
Found at i:176121 original size:22 final size:22
Alignment explanation
Indices: 176093--176134 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
176083 GTAATATAAC
176093 TTAGTTAAAATTTTCTATTAGT
1 TTAGTTAAAATTTTCTATTAGT
176115 TTAGTTAAAATTTTCTATTA
1 TTAGTTAAAATTTTCTATTA
176135 ATCATTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TTAGTTAAAATTTTCTATTAGT
Found at i:179414 original size:22 final size:22
Alignment explanation
Indices: 179367--179414 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
179357 TAAATTATAT
*
179367 TAAACTAATTCTAAATCCAAAT
1 TAAACTAATTCTAAATCCAAAC
179389 TAAACTATACTTCT-AAT-CAAAC
1 TAAACTA-A-TTCTAAATCCAAAC
179411 TAAA
1 TAAA
179415 ATTTGAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 15 0.65
23 4 0.17
24 4 0.17
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAACTAATTCTAAATCCAAAC
Found at i:182321 original size:3 final size:3
Alignment explanation
Indices: 182315--182377 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
182305 GTAGTAGTTG
* * * * * *
182315 TAA TAA TAA CAA TAA TAA TAA TGA TAA TAA CAA CAA TGA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
182363 TAG TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA
182378 ATTAATATTA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:182907 original size:12 final size:12
Alignment explanation
Indices: 182885--182918 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
182875 CTATTTCAGA
182885 ATAAAAAAAAGG
1 ATAAAAAAAAGG
182897 A-AAAGAAAAAGG
1 ATAAA-AAAAAGG
182909 ATAAAAAAAA
1 ATAAAAAAAA
182919 CCCTAAGGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.15
12 14 0.70
13 3 0.15
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (12 bp):
ATAAAAAAAAGG
Found at i:183994 original size:50 final size:50
Alignment explanation
Indices: 183927--184874 Score: 700
Period size: 50 Copynumber: 19.1 Consensus size: 50
183917 TAACTTCAAT
* * * * *
183927 CTGCAACG-CCGGAGAAGTAAGATTCATTGTTGTAGCTTTAACCTGCTTCA
1 CTGCAACGTCAGG-GAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* ** *
183977 CTGCAACATCAGGGAAGTAAGATTTGCTGTTGTAGCTTCAATCTGTTTTA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
** * ** ** * * *
184027 CTATAACGTTAGACAAGTAAGATTCGTTGTTGTAGCTTTAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
** * * * * *
184077 CTGCAATTTCGGGGAAGCAAG-----CTGTTGTAACTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* ** * *
184122 CTGC-ACTGCCAGGGAAGTAAGATTCGTTGTTGTAGCTTCAATCTATTTAA
1 CTGCAAC-GTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * *
184172 CTGCAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAACCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * *
184222 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * * ** *
184272 CTGCAATGTCGGGGCAGCAAGACTT-GCTGTTGTAGCTTCAATCCATTCCA
1 CTGCAACGTCAGGGAAGTAAGA-TTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * * * *
184322 CTAC-ACCTCCAGGGAAGTAAGATTCGCTATAGTAGCTTCAATCTATTTAA
1 CTGCAACGT-CAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * *
184372 CTGCAATGTCAGGGAAGCAAGATTCACTGTGGTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
184422 CTGCACCGCCAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * *
184472 CTGTAATGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATTTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * *
184522 CTGC-ACTGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTAATTTAA
1 CTGCAAC-GTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCT-GTTTCA
* ** * * * * *
184573 CTGC-ATGTTGGGGAAGCAAGATTCGCTATTTTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * *
184622 CTAC-ACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAAC-GTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
184672 CTGTAATGTC-GGGTAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGG-AAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
** * * ** * *
184722 CTATATCGCCAGGGAAGTAAGATTTGCTGTTGTAGCTTCAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
* * *
184772 CTGTAATGTCAGGGAAGTAAGATTCACTGTTATAGCTTCAATCTGTTGT-A
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTT-TCA
* * ** * * * * *
184822 CTACACCACCAGGGAAGGAAGATTCGCTATTGTAGCTTCAATCTATTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
184872 CTG
1 CTG
184875 TAATGCCAAA
Statistics
Matches: 690, Mismatches: 188, Indels: 40
0.75 0.20 0.04
Matches are distributed among these distances:
44 1 0.00
45 33 0.05
49 15 0.02
50 620 0.90
51 21 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (50 bp):
CTGCAACGTCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTGTTTCA
Found at i:184254 original size:100 final size:100
Alignment explanation
Indices: 183940--184868 Score: 1134
Period size: 100 Copynumber: 9.3 Consensus size: 100
183930 CAACGCCGGA
** * * ** * ** * * **
183940 GAAGTAAGATTCATTGTTGTAGCTTTAACCTGCTTCACTGCAACATCAGGGAAGTAAGATTTGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
** * * ** *
184005 GTTGTAGCTTCAATCTGTTTTACTATAACGTTAGA
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * * *
184040 CAAGTAAGATTCGTTGTTGTAGCTTTAATCTATTTAACTGCAATTTCGGGGAAGCAAG-----CT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* * * *
184100 GTTGTAACTTTAATCTGTTCCACTGCACTGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
*
184135 GAAGTAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* *
184200 GTTGTAGCTTCAACCTGTTCCACTGCACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
** * *
184235 GAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGCAGCAAGACTT-GC
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGA-TTCAC
** *
184299 TGTTGTAGCTTCAATCCATTCCACTACACCTCCAGG
65 TGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
184335 GAAGTAAGATTCGCTATAGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGATTCACT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* *
184400 GTGGTAGCTTCAATCTGTTCCACTGCACCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * * *
184435 AAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGTAATGTCAGGGAAGTAAGATTCACT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* * *
184500 GTTGTAGCTTCAATTTGTTCCACTGCACTGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
** * *
184535 GAAGTAAGATTCATTGTTGTAGCTTCAATCTAATTTAACTGC-ATGTTGGGGAAGCAAGATTCGC
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCT-ATTTAACTGCAATGTCGGGGAAGCAAGATTCAC
* * *
184599 TATTTTAGCTTCAATCTGTTCCACTACACTGCCAGG
65 TGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * *
184635 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGTAATGTCGGGTAAGCAAGATTCGCT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* * *
184700 ATTGTAGCTTCAATCTGTTCCACTATATCGCCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* * * *
184735 GAAGTAAGATTTGCTGTTGTAGCTTCAATCTATTTAACTGTAATGTCAGGGAAGTAAGATTCACT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
* ** *
184800 GTTATAGCTTCAATCTGTTGTACTACACCACCAGG
66 GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
* *
184835 GAAGGAAGATTCGCTATTGTAGCTTCAATCTATT
1 GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
184869 CCACTGTAAT
Statistics
Matches: 728, Mismatches: 92, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
95 81 0.11
99 11 0.02
100 625 0.86
101 11 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (100 bp):
GAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGATTCACT
GTTGTAGCTTCAATCTGTTCCACTACACCGCCAGG
Found at i:185160 original size:88 final size:88
Alignment explanation
Indices: 185040--185470 Score: 497
Period size: 88 Copynumber: 4.9 Consensus size: 88
185030 AGGAGTGGTG
* ** * *
185040 TCTTCGGTCTACTTTTCTGCCAATACAGGAAGACTAGATCTGCTATTTTTAACCTACTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
185105 TGCTCAGGGAGACAAGGCTAATA
66 TGCTCAGGGAGATAAGGCTAAGA
* * * * *
185128 TCCTCGATCTACTTCGCTGCCAATACAAGAAGACAAGATCTACTAGTTTCAACCTACTCCACTAC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* * * * *
185193 TACTCAGGAAGATAAGGTTGAGG
66 TGCTCAGGGAGATAAGGCTAAGA
** * * ** * **
185216 TCTTCGATCTACTTCATTGCTAATACAGGAAGACAAGATCTGTTATCTTT-AGTCTGCTCGGCTG
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT-TTTCAACCTACTCCACTG
*
185280 CTACTCAGGGAGATAAGGCT-AGTA
65 CTGCTCAGGGAGATAAGGCTAAG-A
* * *
185304 TCTTCGATCTATTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACCGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
* *
185369 TGCTCAGGGAGATAAGGCTGAGG
66 TGCTCAGGGAGATAAGGCTAAGA
* * * *
185392 TCTTCGATCTTCTTCGCTGTCAATACAGGAAGACAAGATCTGCTATTTTCAACTTATTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
*
185457 TGCTCAAGGAGATA
66 TGCTCAGGGAGATA
185471 GGATTTATGG
Statistics
Matches: 283, Mismatches: 56, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
87 5 0.02
88 273 0.96
89 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGC
TGCTCAGGGAGATAAGGCTAAGA
Found at i:186744 original size:22 final size:21
Alignment explanation
Indices: 186719--186769 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
186709 TTACCCTCTC
*
186719 CATTTTTACTTTTTCCA-TTTTT
1 CATTTTT-CGTTTT-CATTTTTT
186741 CATTTTTCGTTTTCATTTTTTT
1 CATTTTTCGTTTTCA-TTTTTT
186763 CATTTTT
1 CATTTTT
186770 TATGACTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 5 0.19
22 19 0.73
ACGTcount: A:0.12, C:0.16, G:0.02, T:0.71
Consensus pattern (21 bp):
CATTTTTCGTTTTCATTTTTT
Found at i:187709 original size:15 final size:14
Alignment explanation
Indices: 187676--187725 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
187666 CTTTTTTATC
* *
187676 ATTTTTTTATTTTT
1 ATTTTTTGATTTTG
187690 ATTTTTTGATTTTG
1 ATTTTTTGATTTTG
* *
187704 ACTTTTTAGATTTAG
1 A-TTTTTTGATTTTG
187719 ATTTTTT
1 ATTTTTT
187726 AAATTGTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.18, C:0.02, G:0.08, T:0.72
Consensus pattern (14 bp):
ATTTTTTGATTTTG
Found at i:191905 original size:3 final size:3
Alignment explanation
Indices: 191899--191961 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
191889 GTAGTAGTTG
* * * * * *
191899 TAA TAA TAA CAA TAA TAA TAA TGA TAA TAA CAA CAA TGA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
191947 TAG TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA
191962 ATTAATATTA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:196751 original size:30 final size:30
Alignment explanation
Indices: 196717--196786 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
196707 TGGCCCTTAA
*
196717 GATCCGCGCGC-GACCCGACCCGCTATAGGG
1 GATCCGCGCGCAG-CCCGACCCGCTACAGGG
* *
196747 GATCCGAGCGCAGCCCGACCCGCTCCAGGG
1 GATCCGCGCGCAGCCCGACCCGCTACAGGG
196777 GATCCGCGCG
1 GATCCGCGCG
196787 TTTCTGACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 34 0.97
31 1 0.03
ACGTcount: A:0.16, C:0.41, G:0.34, T:0.09
Consensus pattern (30 bp):
GATCCGCGCGCAGCCCGACCCGCTACAGGG
Found at i:198339 original size:60 final size:60
Alignment explanation
Indices: 198246--198363 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 60
198236 TCAATTTCAG
*
198246 TAGGAGATGGATCATCAGCCCAAATTCTTGAAGGCAAGGCCCAATAAAAAGATTCCAAAA
1 TAGGAGATGGATCACCAGCCCAAATTCTTGAAGGCAAGGCCCAATAAAAAGATTCCAAAA
*
198306 TAGGAGATGGATCACCAGCCCAAATTCTTGAAGGCCAGGCCCAATAAAAAGATTCCAA
1 TAGGAGATGGATCACCAGCCCAAATTCTTGAAGGCAAGGCCCAATAAAAAGATTCCAA
198364 GCCCAATCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (60 bp):
TAGGAGATGGATCACCAGCCCAAATTCTTGAAGGCAAGGCCCAATAAAAAGATTCCAAAA
Found at i:215513 original size:24 final size:24
Alignment explanation
Indices: 215481--215538 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
215471 ATGTCCCAAA
215481 ATTACAGTGGACTT-AACCTTAAAG
1 ATTACAGTGGA-TTGAACCTTAAAG
* *
215505 ATTACAGTGGATTGAACTTTGAAG
1 ATTACAGTGGATTGAACCTTAAAG
215529 ATTACAGTGG
1 ATTACAGTGG
215539 GGGCATCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 2 0.06
24 29 0.94
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTAAAG
Found at i:215991 original size:44 final size:42
Alignment explanation
Indices: 215853--216381 Score: 231
Period size: 43 Copynumber: 12.5 Consensus size: 42
215843 TCTTATCAAG
* * *
215853 TCTTATCTCGCTAAGCAGTAGTGGAGCA-GACAGAAGAAATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG--ATCAGA
* * * * * * *
215896 TCTTATGTTCCTAAGCAGTAGTGAAGCAGAATTAAGCCACCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAG--ATCAGA
* * * * *
215939 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTGTAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGA-T-CAGA
* * *
215983 TCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCG--CATCAAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* * * *
216023 TCTTATCTCCCTAAGCTGTAGTGGAGCA-GATCG--CATCAGG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* *
216063 TCTTATCTCCCTAAGCAGTAGTGGAGT-GGACAGAAGAAACCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG--ATCAGA
* * * * *
216106 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGA-T-CAGA
* * *
216150 TCTTATCTCCCTAAGCAGTAGTGGAGCA-AATCG--CATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* * *
216189 GTCTTATCTCCCTAAGCAGTAGTGGAGCA-GACAGAAGAAACTA-A
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG-ATC-AGA
* * *
216233 TCTTATTTCCCTAAGCAGTAGTGGAGCA-GATCG--CATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* ** *
216272 GTCTTATCTCCCTAAGCAGTAGTGGAGCA-GACAAAAGAAACCA-A
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG--ATCAGA
* * * * *
216316 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATCGTAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATC--AGA
*
216360 TCTTATCTCTCTAAGCAGTAGT
1 TCTTATCTCCCTAAGCAGTAGT
216382 AGAGCAAATC
Statistics
Matches: 373, Mismatches: 80, Indels: 65
0.72 0.15 0.13
Matches are distributed among these distances:
39 3 0.01
40 129 0.35
41 6 0.02
42 2 0.01
43 149 0.40
44 84 0.23
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (42 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATCAGA
Found at i:216037 original size:40 final size:40
Alignment explanation
Indices: 215982--216302 Score: 313
Period size: 40 Copynumber: 7.8 Consensus size: 40
215972 AAGATTGTAG
215982 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* *
216022 ATCTTATCTCCCTAAGCTGTAGTGGAGCAGATCGCATCAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* * * * *
216062 GTCTTATCTCCCTAAGCAGTAGTGGAGTGGACAGA-AGAAACCA
1 ATCTTATCTCCCTAAGCAGTAGTGGA---G-CAGATCGCATCAA
* * * * * * * * *
216105 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-T-CAA
*
216149 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* * * *
216189 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATCAA
*
216232 ATCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
*
216272 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
216303 CAAAAGAAAC
Statistics
Matches: 224, Mismatches: 43, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
39 3 0.01
40 127 0.57
41 1 0.00
42 2 0.01
43 59 0.26
44 32 0.14
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (40 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
Found at i:216237 original size:210 final size:207
Alignment explanation
Indices: 215983--216407 Score: 681
Period size: 210 Copynumber: 2.0 Consensus size: 207
215973 AGATTGTAGA
* * *
215983 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCTGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAACAAATCTTATCTCCCTAAGCAGTAGTGGA
* ** *
216048 GCAGATCGCATCAGGTCTTATCTCCCTAAGCAGTAGTGGAGTGGACAGAAGAAACCAATCCTATC
66 GCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATC
* * *
216113 TCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
131 TCCCTGAGCAGCAGTGGAGTAGGTTGAAAATCGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCA
216178 AATCGCATCAAG
196 AATCGCATCAAG
* *
216190 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACTAATCTTATTTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GAAACAAATCTTATCTCCCTAAGCAGTAG
216254 TGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCC
62 TGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCC
*
216319 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATCGTAGATCTTATCTCTCTAAGCAGTAGTAG
127 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATCGTAGATCTTATCTCCCTAAGCAGTAGTAG
*
216384 AGCAAATCGCATCCAG
192 AGCAAATCGCATCAAG
216400 TCTTATCT
1 TCTTATCT
216408 TCCTGAAGTT
Statistics
Matches: 200, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
206 1 0.00
207 30 0.15
210 169 0.85
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (207 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAACAAATCTTATCTCCCTAAGCAGTAGTGGA
GCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATC
TCCCTGAGCAGCAGTGGAGTAGGTTGAAAATCGTAGATCTTATCTCCCTAAGCAGTAGTAGAGCA
AATCGCATCAAG
Found at i:216282 original size:167 final size:167
Alignment explanation
Indices: 215847--216298 Score: 580
Period size: 167 Copynumber: 2.7 Consensus size: 167
215837 AAGTCATCTT
*
215847 ATCAAGTCTTATCTCGCTAAGCAGTAGTGGAGCAGACAGAAGAAA-TCAATCTTATGTT-CCTAA
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACT-AATCTTAT-TTCCCTAA
* *
215910 GCAGTAGTGAAGCAGAATTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
64 GCAGTAGTGGAGCAG-A-T-AGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
*
215975 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
126 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGC
* * * * * *
216017 ATCAAATCTTATCTCCCTAAGCTGTAGTGGAGCAGATC----GCATC-AGGTCTTATCTCCCTAA
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAGAAACTA-ATCTTATTTCCCTAA
* *
216077 GCAGTAGTGGAGTGGACAGA-AGAAACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
64 GCAGTAGTGGA---G-CAGATAGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAA
216141 GATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGC
125 GATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGC
216184 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
* * * * *
216249 AGTAGTGGAGCAGATCG-CATCAAGTCTTATCTCCCTAAGCAGTAGTGGAG
66 AGTAGTGGAGCAGATAGACACCAA-TCCTATCTCCCTGAGCAGCAGTGGAG
216299 CAGACAAAAG
Statistics
Matches: 243, Mismatches: 24, Indels: 33
0.81 0.08 0.11
Matches are distributed among these distances:
166 11 0.05
167 165 0.68
170 62 0.26
171 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (167 bp):
ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
AGTAGTGGAGCAGATAGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTGT
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGC
Found at i:216393 original size:127 final size:124
Alignment explanation
Indices: 215853--216407 Score: 469
Period size: 127 Copynumber: 4.4 Consensus size: 124
215843 TCTTATCAAG
* * * *
215853 TCTTATCTCGCTAAGCAGTAGTGGAGCAGA-CAGAAGAAATCAA-TCTTATGTTCCTAAGCAGTA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----G-CATCAAGTCTTATCTCCCTAAGCAGTA
* * * * ***
215916 GTGAAGCAGAATTAAGCCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTGTA
61 GTGGAGCAGAA-AAAG-CACCAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGCAGAAGAAACTA
215981 GA
124 -A
* *
215983 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGCTGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
** * * * * *
216048 GCAG--ATCGCATCAGGTCTTATCTCCCTAAGCAGTAGTGGAGT-GGACAGAAGAAACCAA
66 GCAGAAAAAGCACCA-ATCCTATCTCCCTAAGCAGCAGTGGAGTAGG-CAGAAGAAACTAA
* * * * * * * **
216106 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TCAAG-TCTTATCTCCCTAAGCAGTAG
** * * * * *
216171 TGGAGC--AAATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAACTAA
62 TGGAGCAGAAAAAGCACCAA-TCCTATCTCCCTAAGCAGCAGTGGAGTAGGCAGAAGAAACTAA
*
216233 TCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
* * ** *
216298 GCAGACAAAAGAAACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA-AATCGTAGA
66 GCAGA-AAAAG-CACCAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGCAGAAGAAAC-TA-A
* * * *
216360 TCTTATCTCTCTAAGCAGTAGTAGAGCAAATCGCATCCAGTCTTATCT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCT
216408 TCCTGAAGTT
Statistics
Matches: 346, Mismatches: 61, Indels: 39
0.78 0.14 0.09
Matches are distributed among these distances:
123 61 0.18
124 35 0.10
125 6 0.02
126 40 0.12
127 173 0.50
128 1 0.00
130 29 0.08
131 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (124 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
GCAGAAAAAGCACCAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGCAGAAGAAACTAA
Found at i:220205 original size:21 final size:21
Alignment explanation
Indices: 220179--220221 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
220169 TTAAATATAA
220179 GACTAAGACCTAAGGAGATTT
1 GACTAAGACCTAAGGAGATTT
** *
220200 GACTAAGTGCTAGGGAGATTT
1 GACTAAGACCTAAGGAGATTT
220221 G
1 G
220222 CTAGCTTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (21 bp):
GACTAAGACCTAAGGAGATTT
Found at i:222291 original size:185 final size:184
Alignment explanation
Indices: 221827--222335 Score: 698
Period size: 184 Copynumber: 2.8 Consensus size: 184
221817 ATTCATATAT
* * * ** * *
221827 GAATCCAATTCAGCAA-TGAATATCGATATACCCAACAATTCAACAATGTATAACCATTCACGAA
1 GAAT-CAATTCAGCAACT-TATATCCATATACCAAACAATTCGGCAATATATAACCATACACGAA
* ** * * * * *
221891 TCAAGTTCGGCAATATATAATTATACACAAATCAAATTTGGCATCCTATATTCATAAACAATTCA
64 TGAAGTTCGATAATGTATAATCAAATACAAATCAAATTTGGCATCCTATATACATAAACAATTCA
* * * * * *
221956 ATATCAACAATATATAACCAAGTATGAATTAATTTCAGCAATGTACAACCCTGTAC
129 ATATCGACAATATATAACCAAGTATCAATTAATTTCAGCAAGGTAAAACCATCTAC
*
222012 GAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATACATGAATG
1 GAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATACACGAATG
* *
222077 AAGTTCGATAATGTATAATCAAATACAAATCTAATTTGGCATCCTATATACATAAAAAATTCAAT
66 AAGTTCGATAATGTATAATCAAATACAAATCAAATTTGGCATCCTATATACATAAACAATTCAAT
* *
222142 ATCGACAATATATGACCATGTA-CAATTTAATTTCAGCAAGGTAAAACCATCTAC
131 ATCGACAATATATAACCAAGTATCAA-TTAATTTCAGCAAGGTAAAACCATCTAC
*
222196 GAATCAATTCAGCAACTTTTATCCCATATACCAAACAATTCGGCAATATATAACCATACACGAAT
1 GAATCAATTCAGCAACTTATAT-CCATATACCAAACAATTCGGCAATATATAACCATACACGAAT
* * *
222261 GAAGTTCAATAATGTATAATCAAATACAAATCCAATTCGGCATCCTATATACATAAACAATTCAA
65 GAAGTTCGATAATGTATAATCAAATACAAATCAAATTTGGCATCCTATATACATAAACAATTCAA
222326 TATCGACAAT
130 TATCGACAAT
222336 GTCGAAACCA
Statistics
Matches: 289, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
183 2 0.01
184 170 0.59
185 117 0.40
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (184 bp):
GAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATACACGAATG
AAGTTCGATAATGTATAATCAAATACAAATCAAATTTGGCATCCTATATACATAAACAATTCAAT
ATCGACAATATATAACCAAGTATCAATTAATTTCAGCAAGGTAAAACCATCTAC
Found at i:226712 original size:12 final size:12
Alignment explanation
Indices: 226691--226724 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
226681 TATCAACAAC
*
226691 AATAATAAATAGT
1 AATAA-AAATAAT
226704 AATAAAAATAAT
1 AATAAAAATAAT
226716 AATAAAAAT
1 AATAAAAAT
226725 TAATTAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:236068 original size:186 final size:186
Alignment explanation
Indices: 235754--236128 Score: 660
Period size: 186 Copynumber: 2.0 Consensus size: 186
235744 CGTCCGTGGA
* *
235754 TACCTCGTGCGCTCATCGTAGAATTCGTAGCTTATCTGTGTTACCAATTTTATGAATCAGTTACA
1 TACCTCGTGCACTCATCGTAGAATTCGTAGCTTATCCGTGTTACCAATTTTATGAATCAGTTACA
235819 ATTTCGATATCTATTAGTAGACATTTTATGCAAAACAATATCAGATGTTTAAAGTTTGTTATCAC
66 ATTTCGATATCTATTAGTAGACATTTTATGCAAAACAATATCAGATGTTTAAAGTTTGTTATCAC
*
235884 GAATCGCAGTCTTACTACAGTTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
131 GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
* * *
235940 TACCTCGTGCACTCATCGTAGAATTTGTAGCTTATCCGTGTTATCAGTTTTATGAATCAGTTACA
1 TACCTCGTGCACTCATCGTAGAATTCGTAGCTTATCCGTGTTACCAATTTTATGAATCAGTTACA
* * * *
236005 GTTTCGATATCTATTAGTAGATATTTTATGCAAAACAGTATCAGATGTTTAGAGTTTGTTATCAC
66 ATTTCGATATCTATTAGTAGACATTTTATGCAAAACAATATCAGATGTTTAAAGTTTGTTATCAC
236070 GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
131 GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
236126 TAC
1 TAC
236129 AGTGTTCTTA
Statistics
Matches: 179, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
186 179 1.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (186 bp):
TACCTCGTGCACTCATCGTAGAATTCGTAGCTTATCCGTGTTACCAATTTTATGAATCAGTTACA
ATTTCGATATCTATTAGTAGACATTTTATGCAAAACAATATCAGATGTTTAAAGTTTGTTATCAC
GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
Found at i:240025 original size:21 final size:22
Alignment explanation
Indices: 239974--240025 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
239964 TTTTAACCAA
*
239974 ATTAGTTCTTGAACACTAAATT
1 ATTAATTCTTGAACACTAAATT
239996 -TTAATTTCTT-AAC-CTAAAATT
1 ATTAA-TTCTTGAACACT-AAATT
240017 ATTAATTCT
1 ATTAATTCT
240026 ATTTATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 2 0.08
21 15 0.58
22 9 0.35
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (22 bp):
ATTAATTCTTGAACACTAAATT
Found at i:246033 original size:23 final size:22
Alignment explanation
Indices: 245969--246070 Score: 71
Period size: 22 Copynumber: 4.5 Consensus size: 22
245959 TCACCCACCG
* *
245969 AATAGAACCAAACATAACCTCCA
1 AATACAACCAAACATACCCT-CA
* * **
245992 AACACATCC-AATTTACCCTCAA
1 AATACAACCAAACATACCCTC-A
* *
246014 AATATAACCAAACATACCCTCC
1 AATACAACCAAACATACCCTCA
* * *
246036 AACACAACCAAATATAGCCTCCA
1 AATACAACCAAACATACCCT-CA
246059 AATACAACCAAA
1 AATACAACCAAA
246071 TATTCCATCC
Statistics
Matches: 58, Mismatches: 18, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
21 1 0.02
22 30 0.52
23 27 0.47
ACGTcount: A:0.49, C:0.33, G:0.02, T:0.16
Consensus pattern (22 bp):
AATACAACCAAACATACCCTCA
Found at i:246062 original size:45 final size:46
Alignment explanation
Indices: 245969--246120 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 46
245959 TCACCCACCG
* * * * * *
245969 AATAGAACCAAACATAACCTCCAAACACATCC-AATTTACCCTCAA
1 AATACAACCAAACATACCCTCCAAACACAACCAAATATAGCCTCCA
*
246014 AATATAACCAAACATACCCTCC-AACACAACCAAATATAGCCTCCA
1 AATACAACCAAACATACCCTCCAAACACAACCAAATATAGCCTCCA
* * * * *
246059 AATACAACCAAATATTCCATCCAAACACAACCAGATATAGCCTCCC
1 AATACAACCAAACATACCCTCCAAACACAACCAAATATAGCCTCCA
* *
246105 AACAC-ACCAAATATAC
1 AATACAACCAAACATAC
246121 AACATAATAT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 8 0.09
45 58 0.64
46 25 0.27
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.16
Consensus pattern (46 bp):
AATACAACCAAACATACCCTCCAAACACAACCAAATATAGCCTCCA
Found at i:246071 original size:23 final size:23
Alignment explanation
Indices: 245974--246120 Score: 138
Period size: 23 Copynumber: 6.5 Consensus size: 23
245964 CACCGAATAG
* *
245974 AACCAAACATAACCTCCAAACAC
1 AACCAAATATACCCTCCAAACAC
* * * * *
245997 ATCC-AATTTACCCTCAAAATAT
1 AACCAAATATACCCTCCAAACAC
*
246019 AACCAAACATACCCTCC-AACAC
1 AACCAAATATACCCTCCAAACAC
* *
246041 AACCAAATATAGCCTCCAAATAC
1 AACCAAATATACCCTCCAAACAC
* *
246064 AACCAAATATTCCATCCAAACAC
1 AACCAAATATACCCTCCAAACAC
* * *
246087 AACCAGATATAGCCTCCCAACAC
1 AACCAAATATACCCTCCAAACAC
246110 -ACCAAATATAC
1 AACCAAATATAC
246121 AACATAATAT
Statistics
Matches: 95, Mismatches: 27, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
22 42 0.44
23 53 0.56
ACGTcount: A:0.46, C:0.35, G:0.02, T:0.16
Consensus pattern (23 bp):
AACCAAATATACCCTCCAAACAC
Found at i:247423 original size:38 final size:38
Alignment explanation
Indices: 247371--247446 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
247361 AATTTAGGAG
*
247371 AATGAAAAACTACCAAAATGCCCCTGTACTTTGTCATT
1 AATGAAAAACTACCAAAATGCCCCTATACTTTGTCATT
*
247409 AATGAAAAATTACCAAAATGCCCCTATACTTTGTCATT
1 AATGAAAAACTACCAAAATGCCCCTATACTTTGTCATT
247447 TCTGCAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (38 bp):
AATGAAAAACTACCAAAATGCCCCTATACTTTGTCATT
Found at i:247651 original size:29 final size:29
Alignment explanation
Indices: 247607--247747 Score: 122
Period size: 29 Copynumber: 4.8 Consensus size: 29
247597 TGTATCGATG
* *
247607 ATTATCGAACATGAAAAGGGATGGCTTCG
1 ATTATCGAATATGAAAAGGGATGGCTTCA
** * **
247636 GCTATCGATTATGAAAAGGGATAACTTCA
1 ATTATCGAATATGAAAAGGGATGGCTTCA
*** *
247665 ATTATCGAATATGAAAAAGGGATAAATTAA
1 ATTATCGAATATG-AAAAGGGATGGCTTCA
* *
247695 AATATCGAATATGAAAAGGGA-GAGCTTCG
1 ATTATCGAATATGAAAAGGGATG-GCTTCA
* *
247724 ATTATCGATTTTGAAAAGGGATGG
1 ATTATCGAATATGAAAAGGGATGG
247748 TGACGACCAT
Statistics
Matches: 88, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
29 61 0.69
30 27 0.31
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.26
Consensus pattern (29 bp):
ATTATCGAATATGAAAAGGGATGGCTTCA
Found at i:247800 original size:30 final size:30
Alignment explanation
Indices: 247734--247845 Score: 138
Period size: 29 Copynumber: 3.8 Consensus size: 30
247724 ATTATCGATT
*
247734 TTGAAAAGGGATGGTGACGACCATC-AACA
1 TTGAAAAGGGATGGTGACGACCATCGAATA
*
247763 ATGAAAAGGGATGGTGACGACCATCGAATA
1 TTGAAAAGGGATGGTGACGACCATCGAATA
*** *
247793 TTGAAAAGGGATGGTTTTGACCATCGAGTA
1 TTGAAAAGGGATGGTGACGACCATCGAATA
* *
247823 -TGAAAAGGGATAGTTACGACCAT
1 TTGAAAAGGGATGGTGACGACCAT
247846 TTTTTAGCAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 44 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (30 bp):
TTGAAAAGGGATGGTGACGACCATCGAATA
Found at i:247815 original size:59 final size:59
Alignment explanation
Indices: 247734--247845 Score: 152
Period size: 59 Copynumber: 1.9 Consensus size: 59
247724 ATTATCGATT
*
247734 TTGAAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACCATCGAATA
1 TTGAAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATAGTGACGACCATCGAATA
*** * ** *
247793 TTGAAAAGGGATGGTTTTGACCATCGAGTATGAAAAGGGATAGTTACGACCAT
1 TTGAAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATAGTGACGACCAT
247846 TTTTTAGCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 45 1.00
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (59 bp):
TTGAAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATAGTGACGACCATCGAATA
Found at i:259641 original size:12 final size:12
Alignment explanation
Indices: 259624--259648 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
259614 CACATTGCTA
259624 TTTTCTTTTCTC
1 TTTTCTTTTCTC
259636 TTTTCTTTTCTC
1 TTTTCTTTTCTC
259648 T
1 T
259649 CTGCTTGCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTCTC
Found at i:260574 original size:27 final size:26
Alignment explanation
Indices: 260523--260582 Score: 57
Period size: 27 Copynumber: 2.2 Consensus size: 26
260513 GTAATGGGCC
* *
260523 TAAAATGACCAAAATATCCCTGAAGGG
1 TAAAATGACC-AAATACCCCCGAAGGG
* *
260550 TAAAATGACCAACATACTCTCGAAGGG
1 TAAAATGACCAA-ATACCCCCGAAGGG
*
260577 TGAAAT
1 TAAAAT
260583 ACCCTCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (26 bp):
TAAAATGACCAAATACCCCCGAAGGG
Found at i:260607 original size:27 final size:27
Alignment explanation
Indices: 260577--260829 Score: 287
Period size: 27 Copynumber: 9.4 Consensus size: 27
260567 TCTCGAAGGG
* *
260577 TGAAATACCCTCAAAGGCTAAAATGAC
1 TGAAATACCCCCAAAGGGTAAAATGAC
*
260604 TGAAATACCCCCGAAGGGTAAAATGA-
1 TGAAATACCCCCAAAGGGTAAAATGAC
260630 TCGAAATACCCCCGAAA-GGTAAAATGAC
1 T-GAAATACCCCC-AAAGGGTAAAATGAC
* * *
260658 TAAAATACCCTCGAAGGGTAAAATGAC
1 TGAAATACCCCCAAAGGGTAAAATGAC
* * *
260685 TAAAATACCCCAAAATGGTAAAATGAC
1 TGAAATACCCCCAAAGGGTAAAATGAC
* * * *
260712 TGAAATAGCCCAAAATGGTAAAATGAT
1 TGAAATACCCCCAAAGGGTAAAATGAC
*
260739 TGAAATACCCTCAAAGGGTAAAATGAC
1 TGAAATACCCCCAAAGGGTAAAATGAC
*
260766 TGAAATACCCCCAAAGGGTAAAATGAA
1 TGAAATACCCCCAAAGGGTAAAATGAC
* * *
260793 TGAAATA-CCCCGAAGAGTAAAATAAC
1 TGAAATACCCCCAAAGGGTAAAATGAC
**
260819 TGTTATACCCC
1 TGAAATACCCC
260830 TAGGAGTTGA
Statistics
Matches: 194, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.12
27 168 0.87
28 3 0.02
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (27 bp):
TGAAATACCCCCAAAGGGTAAAATGAC
Found at i:260717 original size:81 final size:79
Alignment explanation
Indices: 260579--260815 Score: 323
Period size: 81 Copynumber: 2.9 Consensus size: 79
260569 TCGAAGGGTG
* *
260579 AAATACCCTCAAAGGCTAAAATGACTGAAATACCCCCGAAGGGTAAAATGATCGAAATACCCCCG
1 AAATACCCTCAAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGAT-GAAATA-CCCCG
260644 AAAGGTAAAATGACTA
64 AAAGGTAAAATGACTA
* * * * * *
260660 AAATACCCTCGAAGGGTAAAATGACTAAAATACCCCAAAATGGTAAAATGACTGAAATAGCCCAA
1 AAATACCCTCAAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGA-TGAAATACCCCGA
* *
260725 AATGGTAAAATGATTG
65 AA-GGTAAAATGACTA
260741 AAATACCCTCAAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGAATGAAATACCCCG-
1 AAATACCCTCAAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATG-ATGAAATACCCCGA
260805 AAGAGTAAAAT
65 AAG-GTAAAAT
260816 AACTGTTATA
Statistics
Matches: 136, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 1 0.01
80 15 0.11
81 118 0.87
82 2 0.01
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.17
Consensus pattern (79 bp):
AAATACCCTCAAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGATGAAATACCCCGAA
AGGTAAAATGACTA
Found at i:267977 original size:20 final size:20
Alignment explanation
Indices: 267929--267978 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
267919 GTTTATGTTG
* *
267929 AGTAAATGAAATGGAAAGTA
1 AGTAAATGGAATGGAAAGAA
267949 AGTAAATGGAAT-GATAAGAA
1 AGTAAATGGAATGGA-AAGAA
267969 AGTAAATGGA
1 AGTAAATGGA
267979 GTGGTTCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.54, C:0.00, G:0.26, T:0.20
Consensus pattern (20 bp):
AGTAAATGGAATGGAAAGAA
Found at i:273637 original size:28 final size:28
Alignment explanation
Indices: 273605--273660 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
273595 GTGCTTAATC
* *
273605 ACATAAGTTAACAATATAATCACATGAT
1 ACATAACTTAACAATATAACCACATGAT
*
273633 ACATAACTTAACAATATCACCACATGAT
1 ACATAACTTAACAATATAACCACATGAT
273661 TAGATAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (28 bp):
ACATAACTTAACAATATAACCACATGAT
Found at i:273878 original size:58 final size:58
Alignment explanation
Indices: 273800--273910 Score: 179
Period size: 58 Copynumber: 1.9 Consensus size: 58
273790 TGCTACAAGG
*
273800 TGGTCAAAACCATCCCTTTTCATA-TTCGATGGTCATCACCATCCCTTTTCATATTTGA
1 TGGTCAAAACCATCCATTTTCATAGTT-GATGGTCATCACCATCCCTTTTCATATTTGA
* *
273858 TGGTTAAAACCATCCATTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATA
1 TGGTCAAAACCATCCATTTTCATAGTTGATGGTCATCACCATCCCTTTTCATA
273911 GTCAATAGTC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
58 47 0.96
59 2 0.04
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (58 bp):
TGGTCAAAACCATCCATTTTCATAGTTGATGGTCATCACCATCCCTTTTCATATTTGA
Found at i:273911 original size:29 final size:29
Alignment explanation
Indices: 273808--273912 Score: 140
Period size: 29 Copynumber: 3.6 Consensus size: 29
273798 GGTGGTCAAA
273808 ACCATCCCTTTTCATA-TTCGATGGTCATC
1 ACCATCCCTTTTCATAGTT-GATGGTCATC
* * **
273837 ACCATCCCTTTTCATATTTGATGGTTAAA
1 ACCATCCCTTTTCATAGTTGATGGTCATC
* *
273866 ACCATCCATTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAGTTGATGGTCATC
273895 ACCATCCCTTTTCATAGT
1 ACCATCCCTTTTCATAGT
273913 CAATAGTCGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
29 63 0.97
30 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.39
Consensus pattern (29 bp):
ACCATCCCTTTTCATAGTTGATGGTCATC
Found at i:273921 original size:29 final size:29
Alignment explanation
Indices: 273800--273939 Score: 136
Period size: 29 Copynumber: 4.8 Consensus size: 29
273790 TGCTACAAGG
*
273800 TGGTCAAAACCATCCCTTTTCATATTCGA
1 TGGTCAAAACCATCCCTTTTCATAGTCGA
** * *
273829 TGGTCATCACCATCCCTTTTCATATTTGA
1 TGGTCAAAACCATCCCTTTTCATAGTCGA
* * *
273858 TGGTTAAAACCATCCATTTTCATAGTTGA
1 TGGTCAAAACCATCCCTTTTCATAGTCGA
*** *
273887 TGGTCGTCACCATCCCTTTTCATAGTCAA
1 TGGTCAAAACCATCCCTTTTCATAGTCGA
* * * *
273916 TAGTCGAAACTATCCTTTTTCATA
1 TGGTCAAAACCATCCCTTTTCATA
273940 TTCGTTGGGC
Statistics
Matches: 91, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (29 bp):
TGGTCAAAACCATCCCTTTTCATAGTCGA
Found at i:273936 original size:58 final size:58
Alignment explanation
Indices: 273802--273943 Score: 178
Period size: 58 Copynumber: 2.4 Consensus size: 58
273792 CTACAAGGTG
* * ** *
273802 GTCAAAACCATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATATTTGATG
1 GTCAAAACCATCCATTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTCAATA
* *
273860 GTTAAAACCATCCATTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATAGTCAATA
1 GTCAAAACCATCCATTTTCATA-TTCGATGGTCATCACCATCCCTTTTCATAGTCAATA
* * *
273918 GTCGAAACTATCCTTTTTCATATTCG
1 GTCAAAACCATCCATTTTCATATTCG
273944 TTGGGCATTG
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
57 2 0.03
58 67 0.94
59 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.38
Consensus pattern (58 bp):
GTCAAAACCATCCATTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTCAATA
Found at i:280632 original size:29 final size:29
Alignment explanation
Indices: 280552--280636 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
280542 GTGTGCTAAA
* *
280552 CGATAGTTGAAACCATCCCTTTTCAAATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* **
280581 CAATGGTTGTCACCATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* *
280610 CGATGGTTGAAACCGTCCATTTTCATA
1 CGATGGTTGAAACCATCCCTTTTCATA
280637 GTTCACACCA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (29 bp):
CGATGGTTGAAACCATCCCTTTTCATATT
Found at i:283306 original size:30 final size:30
Alignment explanation
Indices: 283272--283335 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
283262 CCGTGTGTCT
283272 AGGCTATGTACAACACACAACCATGTCACC
1 AGGCTATGTACAACACACAACCATGTCACC
* *
283302 AGGCTATGTACACCACACAACCATGTCGCC
1 AGGCTATGTACAACACACAACCATGTCACC
283332 AGGC
1 AGGC
283336 CGTGTGAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.34, G:0.17, T:0.16
Consensus pattern (30 bp):
AGGCTATGTACAACACACAACCATGTCACC
Found at i:284439 original size:18 final size:18
Alignment explanation
Indices: 284412--284453 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
284402 CTAATTGAAC
*
284412 ATTT-TATAAGATATTAG
1 ATTTATATAAGACATTAG
284429 ATTTATATAAGACATTAG
1 ATTTATATAAGACATTAG
284447 ATTTATA
1 ATTTATA
284454 CTAGGACACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (18 bp):
ATTTATATAAGACATTAG
Found at i:285868 original size:143 final size:143
Alignment explanation
Indices: 285610--285889 Score: 454
Period size: 143 Copynumber: 2.0 Consensus size: 143
285600 TTCCAGAATT
* * *
285610 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTATATTATGAGGTCATCTTCAAACATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAAAAATCTTTTAGATTATGAGGTCATCTTCAAAAATT
* * *
285675 TTCTTGCAAAGGTTTCTATCTTAGAGGGGAAATTAGAGCCACTTGAAGGGGGTTGTGGATTTTTC
66 TTCTTGCAAAGGTTTCTATCTTAGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTCTTC
*
285740 GTGTTTCGTTCCA
131 GCGTTTCGTTCCA
*
285753 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAAAAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAAAAATCTTTTAGATTATGAGGTCATCTTCAAAAATT
* *
285818 TTGTTGCCAAA-GTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTCTT
66 TTCTTG-CAAAGGTTTCTATCTTAGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTCTT
285882 CGCGTTTC
130 CGCGTTTC
285890 CAAGGCTTCT
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
143 122 0.97
144 4 0.03
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (143 bp):
GTTCTTGAGTTTCTTTTAGAAGAGTTTTAAAAATCTTTTAGATTATGAGGTCATCTTCAAAAATT
TTCTTGCAAAGGTTTCTATCTTAGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTCTTC
GCGTTTCGTTCCA
Found at i:287702 original size:17 final size:17
Alignment explanation
Indices: 287680--287720 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
287670 TAGTACACGA
287680 GGCAATTAAGATTGAGC
1 GGCAATTAAGATTGAGC
*
287697 GGCAATTGAGATTGAGC
1 GGCAATTAAGATTGAGC
*
287714 AGCAATT
1 GGCAATT
287721 TCAACAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.24
Consensus pattern (17 bp):
GGCAATTAAGATTGAGC
Found at i:288714 original size:20 final size:20
Alignment explanation
Indices: 288689--288741 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
288679 TTTTATAGGT
*
288689 TTATTTCCTCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
288709 TTATTTTATCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
288729 AT-TTTCTATCTTG
1 TTATTTC-ATCTTG
288742 ACCTTTAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (20 bp):
TTATTTCATCTTGCAACAAA
Found at i:304159 original size:27 final size:27
Alignment explanation
Indices: 304121--304387 Score: 383
Period size: 27 Copynumber: 9.9 Consensus size: 27
304111 CCATAATAGT
* * *
304121 TAATTTTGCCCATTGGGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
304148 TAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
304175 TAATTTTACCCATCGAGAGTTTTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
304202 TAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
* * * * *
304229 TAATATTACCCATTGGGGGTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGA
*
304256 TAATTTTACCCATCGAAGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
304283 TAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
304310 TAATTTTACCTATCGAGGGTATTTAGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
304337 TAATTTTACCCATAGAGGGTATTTC-A
1 TAATTTTACCCATCGAGGGTATTTCGA
*
304363 GTAATTTTACCCATCGAGGATATTT
1 -TAATTTTACCCATCGAGGGTATTT
304388 TGGTACAGTT
Statistics
Matches: 213, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 212 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (27 bp):
TAATTTTACCCATCGAGGGTATTTCGA
Found at i:306653 original size:35 final size:35
Alignment explanation
Indices: 306607--306988 Score: 241
Period size: 35 Copynumber: 10.7 Consensus size: 35
306597 GACTATTTTT
* *
306607 TTAGACGTGTCTATCCCAATATTTTTAAGGTTGGC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * *
306642 TTAGACCTGTCTATCCCAACCTTTTTAACGTTTCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * *
306677 TGAGACGTATCAATCCCTATCCTAACCTTTTTAACGTTGCC
1 TTAGACG--T--GT--CTATCCCAACATTTTTAAGGTTGCC
* *
306718 TTAGACGTATCTATCCCAACATTTTTAATGTTGCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * **
306753 TCTA-ACGAGTCCATCCCAACCTTTTTAAAATTGCC
1 T-TAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* *
306788 TTAGATAG-GTCTATCCCAACCTTTTTAAGGTTGCC
1 TTAGA-CGTGTCTATCCCAACATTTTTAAGGTTGCC
* * *
306823 TTACACGGGTCTATACCAACATTTTTAAGGTTGCC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * * *
306858 TTAGACGGGTCCATCTCAATC-TTTTAAAGTTTTCC
1 TTAGACGTGTCTATCCCAA-CATTTTTAAGGTTGCC
* * * * ** *
306893 TTAGATAG-GTCAATCCAAACCTTTTTAAATTTTCC
1 TTAGA-CGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * * *
306928 TTAAAAGGGTCTATCCCAACCTTTTTAAGGTTACC
1 TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
* * * *
306963 TTAAACGGGTCTATCCTAACCTTTTT
1 TTAGACGTGTCTATCCCAACATTTTT
306989 TAACAGTCGA
Statistics
Matches: 283, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
34 6 0.02
35 238 0.84
36 5 0.02
37 3 0.01
39 2 0.01
41 29 0.10
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.37
Consensus pattern (35 bp):
TTAGACGTGTCTATCCCAACATTTTTAAGGTTGCC
Found at i:306709 original size:41 final size:41
Alignment explanation
Indices: 306652--306734 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
306642 TTAGACCTGT
*
306652 CTATCCCAACCTTTTTAACGTTTCCTGAGACGTATCAATCC
1 CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
* * *
306693 CTATCCTAACCTTTTTAACGTTGCCTTAGACGTATCTATCC
1 CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
306734 C
1 C
306735 AACATTTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.23, C:0.31, G:0.10, T:0.36
Consensus pattern (41 bp):
CTATCCCAACCTTTTTAACGTTGCCTGAGACGTATCAATCC
Found at i:306845 original size:105 final size:105
Alignment explanation
Indices: 306693--306988 Score: 344
Period size: 105 Copynumber: 2.8 Consensus size: 105
306683 GTATCAATCC
* * * ** *
306693 CTATCCTAACCTTTTTAACGTTGCCTTAGACGTATCTATCCCAACATTTTTAATGTTGCCTCTAA
1 CTATCCAAACCTTTTTAAAGTTGCCTTAAACGGGTCTATCCCAACATTTTTAAGGTTGCCT-TAA
*
306758 CGAGTCCATCCCAACCTTTTTAAA-ATTGCCTTAGATAGGT
65 CGGGTCCATCCCAACCTTTTTAAAGATTGCCTTAGATAGGT
* * * *
306798 CTATCCCAACCTTTTTAAGGTTGCCTTACACGGGTCTATACCAACATTTTTAAGGTTGCCTTAGA
1 CTATCCAAACCTTTTTAAAGTTGCCTTAAACGGGTCTATCCCAACATTTTTAAGGTTGCCTTA-A
* * * *
306863 CGGGTCCATCTCAATC-TTTTAAAGTTTTCCTTAGATAGGT
65 CGGGTCCATCCCAACCTTTTTAAAGATTGCCTTAGATAGGT
* * * * * *
306903 CAATCCAAACCTTTTTAAATTTTCCTTAAAAGGGTCTATCCCAACCTTTTTAAGGTTACCTTAAA
1 CTATCCAAACCTTTTTAAAGTTGCCTTAAACGGGTCTATCCCAACATTTTTAAGGTTGCCTT-AA
* *
306968 CGGGTCTATCCTAACCTTTTT
65 CGGGTCCATCCCAACCTTTTT
306989 TAACAGTCGA
Statistics
Matches: 161, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
104 9 0.06
105 147 0.91
106 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (105 bp):
CTATCCAAACCTTTTTAAAGTTGCCTTAAACGGGTCTATCCCAACATTTTTAAGGTTGCCTTAAC
GGGTCCATCCCAACCTTTTTAAAGATTGCCTTAGATAGGT
Found at i:306882 original size:70 final size:68
Alignment explanation
Indices: 306693--306988 Score: 277
Period size: 70 Copynumber: 4.2 Consensus size: 68
306683 GTATCAATCC
* ** * *
306693 CTATCCTAACCTTTTTAACGTTGCCTTAGACGTATCTATCCCAACATTTTTAATGTTGCCTCTAA
1 CTATCC-AACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCT-TAA
*
306758 CGAGT
64 CGGGT
* * **
306763 CCATCCCAACCTTTTTAAAATTGCCTTAGATAGGTCTATCCCAACCTTTTTAAGGTTGCCTTACA
1 CTAT-CCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTA-A
306828 CGGGT
64 CGGGT
* * * * * * * *
306833 CTATACCAACATTTTTAAGGTTGCCTTAGACGGGTCCATCTCAATCTTTTAAAGTTTTCCTTAGA
1 CTAT-CCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTA-A
**
306898 TAGGT
64 CGGGT
* * * * * *
306903 CAATCCAAACCTTTTTAAATTTTCCTTAAAAGGGTCTATCCCAACCTTTTTAAGGTTACCTTAAA
1 CTATCC-AACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTT-AA
306968 CGGGT
64 CGGGT
306973 CTATCCTAACCTTTTT
1 CTATCC-AACCTTTTT
306989 TAACAGTCGA
Statistics
Matches: 179, Mismatches: 43, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
69 4 0.02
70 172 0.96
71 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (68 bp):
CTATCCAACCTTTTTAAAGTTGCCTTAGACGGGTCTATCCCAACCTTTTTAAGGTTGCCTTAACG
GGT
Found at i:307552 original size:24 final size:24
Alignment explanation
Indices: 307524--307575 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
307514 TTTCTAGAAG
* *
307524 ATTTAG-TATTTATTAGTATAATAT
1 ATTTAGCT-TTTATTAGCATAAAAT
307548 ATTTAGCTTTTATTAGCATAAAAT
1 ATTTAGCTTTTATTAGCATAAAAT
307572 ATTT
1 ATTT
307576 GAAATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCTTTTATTAGCATAAAAT
Found at i:317595 original size:13 final size:14
Alignment explanation
Indices: 317577--317608 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
317567 TAATTGTGAA
317577 AAAGTTT-GGAATT
1 AAAGTTTAGGAATT
317590 AAAGTTTAGGAATT
1 AAAGTTTAGGAATT
317604 AAAGT
1 AAAGT
317609 CTAGTGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (14 bp):
AAAGTTTAGGAATT
Found at i:323874 original size:13 final size:13
Alignment explanation
Indices: 323858--323882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
323848 ATCCAATAAT
323858 AAGACTAAAAATA
1 AAGACTAAAAATA
323871 AAGACTAAAAAT
1 AAGACTAAAAAT
323883 TGTTCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (13 bp):
AAGACTAAAAATA
Found at i:324736 original size:21 final size:20
Alignment explanation
Indices: 324676--324736 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
324666 TATATTATAT
*
324676 TATATTATTTCAATTATAACTTA
1 TATATT-TTTTAATT-TAA-TTA
**
324699 TAT-TTTTTTAAAGTAATTA
1 TATATTTTTTAATTTAATTA
324718 TAATATTTTTTAATTTAAT
1 T-ATATTTTTTAATTTAAT
324737 AAATTTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
21 17 0.55
22 2 0.06
23 3 0.10
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (20 bp):
TATATTTTTTAATTTAATTA
Found at i:326041 original size:727 final size:724
Alignment explanation
Indices: 324723--326082 Score: 2392
Period size: 727 Copynumber: 1.9 Consensus size: 724
324713 AATTATAATA
*
324723 TTTTTTAATTTAATAAATTTTATAAGAATTTCTTAACAAATAAATATAATATATTTTATTTATAT
1 TTTTTTAATTTAATAAATTTTATAAGAATTTCTT---AAATAAATATAATATATTTTATTTATAC
*
324788 ATACAACCAAATTTATGTATCGCACTAGATAAAATACTAGAAGAGTTGATCTTTGAATTGTTGAT
63 ATACAACCAAATTTATGTATCGCACTAGATAAAATACTAGAAGAGTTGATATTTGAATTGTTGAT
* *
324853 ATATATAACATTCATTAGTTATTGTCATCCCATAGCTGGTATGATTGCATTAAGCACAAAATCGC
128 ATATATAACATTCATTAGTTACTCTCATCCCATAGCTGGTATGATTGCATTAAGCACAAAATCGC
*
324918 ACATCTCATTTGAAAAAAAGTTCTATCAGGACTTTCATTTTTAAAATTAAAAGTTACTTATTCTA
193 ACATCTCATTTGAAAAAAAGTTCTATCAGGACTTTCATTATTAAAATTAAAAGTTACTTATTCTA
*
324983 TGTTTTGACTACCGAGCCATGTGGATTGCATGTGTGAAAATTTGTTGTATGTGCACAACTTTCAA
258 TGTTTTGACTACCCAGCCATGTGGATTGCATGTGTGAAAATTTGTTGTATGTGCACAACTTTCAA
325048 AATGCTCCAAAGTTTTAATTTCTACTAGTTTTTCACTCCTATTGCTCTCAAGCGCTCTATTAAGC
323 AATGCTCCAAAGTTTTAATTTCTACTAGTTTTTCACTCCTATTGCTCTCAAGCGCTCTATTAAGC
*
325113 ATCAAAACATGAATATAAATTATTAGAAGTATATAATTCATAATTAATGTCACATAATCACTGGA
388 ATCAAAACATGAATATAAATTATTAGAAGTATATAATTCACAATTAATGTCACATAATCACTGGA
325178 AATGCATTTAAAAAAAGCTAAAATATTTTGACAATTATAACTAATGAACACTTTTATAATTTGAA
453 AATGCATTTAAAAAAAGCTAAAATATTTTGACAATTATAACTAATGAACACTTTTATAATTTGAA
325243 TTTAAATTAAGTTATAATCACGTTTTAATATATATTAAAAAATCACTTTTGAAACACTTTATATA
518 TTTAAATTAAGTTATAATCACGTTTTAATATATATTAAAAAATCACTTTTGAAACACTTTATATA
325308 TTTTTTTAAAAAAATTCTCTTCTCAGAGTTGACAAAATATTTTTAAATTAAATTAAAAACAGTTC
583 TTTTTTT--AAAAATTCTCTTCTCAGAGTTGACAAAATATTTTTAAATTAAATTAAAAACAGTTC
325373 ACATGAATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATACTATATTATTTCA
646 ACATGAATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATACTATATTATTTCA
325438 ATTATAACTTATAT
711 ATTATAACTTATAT
325452 TTTTTTAATTTAATAAATTTGT-TAAGAATTTCTT-AATAAATATAATATATTTTATTTATACAT
1 TTTTTTAATTTAATAAATTT-TATAAGAATTTCTTAAATAAATATAATATATTTTATTTATACAT
*
325515 ACAACCAAATTTATGTA-CTGCAGTAGATAAAATACTAGAAGAGTTGATATTTGAATTGTTGATA
65 ACAACCAAATTTATGTATC-GCACTAGATAAAATACTAGAAGAGTTGATATTTGAATTGTTGATA
* * * * *
325579 TATA-AACATTCGTTAGTTACTCTCATCTCGTAGTTGGTATGATTGCATTCAA-CACAAAATTGC
129 TATATAACATTCATTAGTTACTCTCATCCCATAGCTGGTATGATTGCATT-AAGCACAAAATCGC
* * *
325642 ACATCTCATTTGAAAAAAAGTTCAAGTATTAGGACTTTCATTATTGAAGTTAAAAGTTACTTATT
193 ACATCTCATTTGAAAAAAAGTTC---TATCAGGACTTTCATTATTAAAATTAAAAGTTACTTATT
325707 CTATGTTTTGACTACCCAGCCATGTGGATTGCATGTGTGAAAATTTGTTGTATGTGCACAACTTT
255 CTATGTTTTGACTACCCAGCCATGTGGATTGCATGTGTGAAAATTTGTTGTATGTGCACAACTTT
* *
325772 CAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTTCACTCCTATTGCTCTCAAGTGCTCTGTTA
320 CAAAATGCTCCAAAGTTTTAATTTCTACTAGTTTTTCACTCCTATTGCTCTCAAGCGCTCTATTA
325837 AGCATCAAAACATGAATATAAATTATTAGAAGTATATAATTCACAATTAATGTCACATAATCACT
385 AGCATCAAAACATGAATATAAATTATTAGAAGTATATAATTCACAATTAATGTCACATAATCACT
325902 GGAAATGCA-TTAAAAAAAGCTAAAATATTTTGACAATTATAACTAATGAACACTTTTATAATTT
450 GGAAATGCATTTAAAAAAAGCTAAAATATTTTGACAATTATAACTAATGAACACTTTTATAATTT
325966 GAATTTAAATTAAGTTATAATCACGTTTTAATATATATT-AAAAATCACTTTTGAAACACTTTAT
515 GAATTTAAATTAAGTTATAATCACGTTTTAATATATATTAAAAAATCACTTTTGAAACACTTTAT
326030 ATATTTTTTTTTAAAAATTCTCTTCTCAGAGTTGACAAAATATTTTTAAATTA
580 ATA--TTTTTTTAAAAATTCTCTTCTCAGAGTTGACAAAATATTTTTAAATTA
Statistics
Matches: 605, Mismatches: 18, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
724 73 0.12
725 163 0.27
726 94 0.16
727 242 0.40
729 32 0.05
730 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.39
Consensus pattern (724 bp):
TTTTTTAATTTAATAAATTTTATAAGAATTTCTTAAATAAATATAATATATTTTATTTATACATA
CAACCAAATTTATGTATCGCACTAGATAAAATACTAGAAGAGTTGATATTTGAATTGTTGATATA
TATAACATTCATTAGTTACTCTCATCCCATAGCTGGTATGATTGCATTAAGCACAAAATCGCACA
TCTCATTTGAAAAAAAGTTCTATCAGGACTTTCATTATTAAAATTAAAAGTTACTTATTCTATGT
TTTGACTACCCAGCCATGTGGATTGCATGTGTGAAAATTTGTTGTATGTGCACAACTTTCAAAAT
GCTCCAAAGTTTTAATTTCTACTAGTTTTTCACTCCTATTGCTCTCAAGCGCTCTATTAAGCATC
AAAACATGAATATAAATTATTAGAAGTATATAATTCACAATTAATGTCACATAATCACTGGAAAT
GCATTTAAAAAAAGCTAAAATATTTTGACAATTATAACTAATGAACACTTTTATAATTTGAATTT
AAATTAAGTTATAATCACGTTTTAATATATATTAAAAAATCACTTTTGAAACACTTTATATATTT
TTTTAAAAATTCTCTTCTCAGAGTTGACAAAATATTTTTAAATTAAATTAAAAACAGTTCACATG
AATGATAATATAAAATATAACGATTCTAAAACATATATTATATTATACTATATTATTTCAATTAT
AACTTATAT
Done.