Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold61
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1997344
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.30
Warning! 204170 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:1425176 original size:19 final size:19
Alignment explanation
Indices: 1425154--1425191 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1425144 TCAATCATCC
1425154 CTCATCCAATCA-TCTCTCA
1 CTCATCC-ATCATTCTCTCA
*
1425173 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
1425192 ACTATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.24, C:0.39, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:1434604 original size:67 final size:67
Alignment explanation
Indices: 1434521--1434654 Score: 250
Period size: 67 Copynumber: 2.0 Consensus size: 67
1434511 TATCTCACTA
*
1434521 AAATTCAAATATCTCATAATATATAATTCATTTGCCTACATTGTTTCTTTCATGTGAAAACAGAC
1 AAATTCAAATATCTCATAATATATAATTCATTTGCCTACATTGTTTCTTTCATGTGAAAACAAAC
1434586 TC
66 TC
*
1434588 AAATTCAAATATCTCATAATATATAATTCCTTTGCCTACATTGTTTCTTTCATGTGAAAACAAAC
1 AAATTCAAATATCTCATAATATATAATTCATTTGCCTACATTGTTTCTTTCATGTGAAAACAAAC
1434653 TC
66 TC
1434655 GATAATTTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.39
Consensus pattern (67 bp):
AAATTCAAATATCTCATAATATATAATTCATTTGCCTACATTGTTTCTTTCATGTGAAAACAAAC
TC
Found at i:1435509 original size:50 final size:50
Alignment explanation
Indices: 1435445--1435571 Score: 157
Period size: 50 Copynumber: 2.6 Consensus size: 50
1435435 CCTGTACTGT
* * ** **
1435445 CAATGCCATATCCTAGATATGGTCTTACATTGGAGTTCTCATATCAGTGC
1 CAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATATCAGTGC
* * * *
1435495 CCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATATCAGTGC
1435545 CAATGCCATGTCCTAG-CATGGTCTTAC
1 CAATGCCATGTCCTAGACATGGTCTTAC
1435572 GTGGGGCCTC
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 11 0.17
50 55 0.83
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
CAATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATATCAGTGC
Found at i:1440993 original size:25 final size:25
Alignment explanation
Indices: 1440952--1441046 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
1440942 TCTAGTACAT
* * *
1440952 GTATGCTCACACAAGCTGTGAATCG
1 GTATGCTCTCACGAGCTGTAAATCG
**
1440977 GTATGCTCTCTTGAGCTGTAAATCG
1 GTATGCTCTCACGAGCTGTAAATCG
*
1441002 GTATGCTCTCACGAGCTGTAAATTG
1 GTATGCTCTCACGAGCTGTAAATCG
*
1441027 GTAAGCTCAT-ACGAGCTGTA
1 GTATGCTC-TCACGAGCTGTA
1441047 GTGTGTCTGC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
25 59 0.98
26 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTGTAAATCG
Found at i:1451285 original size:25 final size:25
Alignment explanation
Indices: 1451147--1451281 Score: 121
Period size: 25 Copynumber: 5.4 Consensus size: 25
1451137 TCTTGTACAT
* *
1451147 GTATGCTCATACGAGCTGTGAATTG
1 GTATGCTCACACGAGCTGTAAATTG
* * * *
1451172 GTATCCTCACTCGAGCTGTAGATCG
1 GTATGCTCACACGAGCTGTAAATTG
* * *
1451197 GTATGCTCTCACGACCTATAATATT-
1 GTATGCTCACACGAGCTGTAA-ATTG
* * *
1451222 -TATGCTCACACGAGCTATAGATCG
1 GTATGCTCACACGAGCTGTAAATTG
* *
1451246 GTATGCTCTCATGAGCTGTAAATTG
1 GTATGCTCACACGAGCTGTAAATTG
1451271 GTATGCTCACA
1 GTATGCTCACA
1451282 TGAGTTGTGG
Statistics
Matches: 84, Mismatches: 23, Indels: 6
0.74 0.20 0.05
Matches are distributed among these distances:
23 2 0.02
24 17 0.20
25 63 0.75
26 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATTG
Found at i:1455428 original size:29 final size:29
Alignment explanation
Indices: 1455395--1455661 Score: 238
Period size: 29 Copynumber: 9.2 Consensus size: 29
1455385 AAACCATCTT
1455395 TTTTCATAGTCGATAGTCGAAGCTATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCC
* * *
1455424 TTTTCATAGTCGATGGTCGTCA-CCATCCC
1 TTTTCATAGTCGATAGTCG-AAGCTATCCC
1455453 TTTTCATAGTCGATAGTCGAAGCTATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCC
* * ** *
1455482 TTTTCATAGTTGATGGTCG-TCCCATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCC
* * * * *
1455510 TTTTCATAGTTGATGGTCGTCA-CCATCCA
1 TTTTCATAGTCGATAGTCG-AAGCTATCCC
* *
1455539 TTTTCATAATCAATAGTCGAAGCTATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCC
* * * *
1455568 TTTTCATATTTGATAGCCGAAGCTATACC
1 TTTTCATAGTCGATAGTCGAAGCTATCCC
* * * * *
1455597 TTTTCAAACTCGATGGTCGTCA-CCATCCC
1 TTTTCATAGTCGATAGTCG-AAGCTATCCC
*
1455626 TTTTCATAATCGATAG-CTGAAGCTATCCC
1 TTTTCATAGTCGATAGTC-GAAGCTATCCC
1455655 TTTTCAT
1 TTTTCAT
1455662 TATCTGAGGG
Statistics
Matches: 192, Mismatches: 38, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
28 29 0.15
29 161 0.84
30 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (29 bp):
TTTTCATAGTCGATAGTCGAAGCTATCCC
Found at i:1455457 original size:58 final size:58
Alignment explanation
Indices: 1455395--1455661 Score: 317
Period size: 58 Copynumber: 4.6 Consensus size: 58
1455385 AAACCATCTT
1455395 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCC
*
1455453 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTTGATGGTCGTC-CCATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCC
* * * * * * * * * *
1455510 TTTTCATAGTTGATGGTCGTCA-CCATCCATTTTCATAATCAATAGTCG-AAGCTATCCC
1 TTTTCATAGTCGATAGTCG-AAGCTATCCCTTTTCATAGTCGATGGTCGTCA-CCATCCC
* * * * * *
1455568 TTTTCATATTTGATAGCCGAAGCTATACCTTTTCAAACTCGATGGTCGTCACCATCCC
1 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCC
*
1455626 TTTTCATAATCGATAG-CTGAAGCTATCCCTTTTCAT
1 TTTTCATAGTCGATAGTC-GAAGCTATCCCTTTTCAT
1455662 TATCTGAGGG
Statistics
Matches: 174, Mismatches: 29, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
57 46 0.26
58 127 0.73
59 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (58 bp):
TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCC
Found at i:1455516 original size:86 final size:87
Alignment explanation
Indices: 1455395--1455661 Score: 358
Period size: 87 Copynumber: 3.1 Consensus size: 87
1455385 AAACCATCTT
* * * *
1455395 TTTTCATAGTCGATAGTCGAAGCTATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCAT
1 TTTTCATAGTTGATAGCCGAACCCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCAT
*
1455460 AGTCGATAGTCGAAGCTATCCC
66 AATCGATAGTCGAAGCTATCCC
* * * * *
1455482 TTTTCATAGTTGATGGTCG-TCCCATCCCTTTTCATAGTTGATGGTCGTCACCATCCATTTTCAT
1 TTTTCATAGTTGATAGCCGAACCCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCAT
*
1455546 AATCAATAGTCGAAGCTATCCC
66 AATCGATAGTCGAAGCTATCCC
* * * * * *
1455568 TTTTCATATTTGATAGCCGAAGCTATACCTTTTCAAACTCGATGGTCGTCACCATCCCTTTTCAT
1 TTTTCATAGTTGATAGCCGAACCCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCAT
1455633 AATCGATAG-CTGAAGCTATCCC
66 AATCGATAGTC-GAAGCTATCCC
1455655 TTTTCAT
1 TTTTCAT
1455662 TATCTGAGGG
Statistics
Matches: 157, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
86 77 0.49
87 80 0.51
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (87 bp):
TTTTCATAGTTGATAGCCGAACCCATCCCTTTTCATAGTCGATGGTCGTCACCATCCCTTTTCAT
AATCGATAGTCGAAGCTATCCC
Found at i:1458905 original size:29 final size:29
Alignment explanation
Indices: 1458873--1458974 Score: 132
Period size: 29 Copynumber: 3.5 Consensus size: 29
1458863 TTGGTTATTG
* *
1458873 AATACGAAAAAGGATAGCTTCAACTATCA
1 AATATGAAAAGGGATAGCTTCAACTATCA
*
1458902 AATATGAAAAGGGATAGCTTCAGCTATCA
1 AATATGAAAAGGGATAGCTTCAACTATCA
*** *
1458931 AATATGAAAAGGGATAGCTTTGGCTATCG
1 AATATGAAAAGGGATAGCTTCAACTATCA
*
1458960 ATTATGAAAAGGGAT
1 AATATGAAAAGGGAT
1458975 GGTAATGACC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (29 bp):
AATATGAAAAGGGATAGCTTCAACTATCA
Found at i:1458940 original size:58 final size:58
Alignment explanation
Indices: 1458847--1458974 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
1458837 TCATCGATGA
** * **
1458847 ATGAAAAGGGATAGCTTTGGTTATTGAATACGAAAAAGGATAGCTTCAACTATCAAAT
1 ATGAAAAGGGATAGCTTCAGCTATCAAATACGAAAAAGGATAGCTTCAACTATCAAAT
* * *** * *
1458905 ATGAAAAGGGATAGCTTCAGCTATCAAATATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCAGCTATCAAATACGAAAAAGGATAGCTTCAACTATCAAAT
1458963 ATGAAAAGGGAT
1 ATGAAAAGGGAT
1458975 GGTAATGACC
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCAGCTATCAAATACGAAAAAGGATAGCTTCAACTATCAAAT
Found at i:1458998 original size:30 final size:30
Alignment explanation
Indices: 1458962--1459124 Score: 179
Period size: 30 Copynumber: 5.4 Consensus size: 30
1458952 GGCTATCGAT
1458962 TATGAAAAGGGATGGTAATGACCATCAAAC
1 TATGAAAAGGGATGGTAATGACCATCAAAC
1458992 TATGAAAAGGGATGGTAATGACCATCAAAC
1 TATGAAAAGGGATGGTAATGACCATCAAAC
* * * *
1459022 TATGAAAAGGGATGGTGACGGCCTTCAAAC
1 TATGAAAAGGGATGGTAATGACCATCAAAC
* * *
1459052 AATGGAAAA-GGATGGTAACGACCATCAAAT
1 TAT-GAAAAGGGATGGTAATGACCATCAAAC
* * **
1459082 TATTAAAAGGGATAGCT--TCGACTGTCAAAC
1 TATGAAAAGGGAT-GGTAAT-GACCATCAAAC
1459112 TATGAAAAGGGAT
1 TATGAAAAGGGAT
1459125 AACTTTGGTT
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
29 4 0.04
30 101 0.90
31 7 0.06
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (30 bp):
TATGAAAAGGGATGGTAATGACCATCAAAC
Found at i:1459125 original size:30 final size:31
Alignment explanation
Indices: 1458878--1459125 Score: 152
Period size: 30 Copynumber: 8.4 Consensus size: 31
1458868 TATTGAATAC
* *
1458878 GAAAAAGGATAGCT-TCAACTATCAAA-TAT
1 GAAAAGGGATAGCTATCGACTATCAAACTAT
1458907 GAAAAGGGATAGCT-TC-AGCTATCAAA-TAT
1 GAAAAGGGATAGCTATCGA-CTATCAAACTAT
* * * *
1458936 GAAAAGGGATAGCT-TTGGCTATC-GATTAT
1 GAAAAGGGATAGCTATCGACTATCAAACTAT
* *
1458965 GAAAAGGGAT-GGTAAT-GACCATCAAACTAT
1 GAAAAGGGATAGCT-ATCGACTATCAAACTAT
* *
1458995 GAAAAGGGAT-GGTAAT-GACCATCAAACTAT
1 GAAAAGGGATAGCT-ATCGACTATCAAACTAT
* * *
1459025 GAAAAGGGAT-GGTGA-CGGCCT-TCAAACAAT
1 GAAAAGGGATAGCT-ATC-GACTATCAAACTAT
* * * *
1459055 GGAAAA-GGAT-GGTAACGACCATCAAATTAT
1 -GAAAAGGGATAGCTATCGACTATCAAACTAT
* *
1459085 TAAAAGGGATAGCT-TCGACTGTCAAACTAT
1 GAAAAGGGATAGCTATCGACTATCAAACTAT
1459115 GAAAAGGGATA
1 GAAAAGGGATA
1459126 ACTTTGGTTA
Statistics
Matches: 182, Mismatches: 24, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
28 4 0.02
29 71 0.39
30 98 0.54
31 9 0.05
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.22
Consensus pattern (31 bp):
GAAAAGGGATAGCTATCGACTATCAAACTAT
Found at i:1460176 original size:32 final size:32
Alignment explanation
Indices: 1460135--1460199 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
1460125 AGAGACATGG
*
1460135 ACGTGTGTCTCAA-CTGTCTGTGACACACGGCC
1 ACGTATGTCTCAATC-GTCTGTGACACACGGCC
*
1460167 ACGTATGTCTCAATCGTCTGTGACACATGGCC
1 ACGTATGTCTCAATCGTCTGTGACACACGGCC
1460199 A
1 A
1460200 AGTGACATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (32 bp):
ACGTATGTCTCAATCGTCTGTGACACACGGCC
Found at i:1467911 original size:29 final size:29
Alignment explanation
Indices: 1467848--1467913 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
1467838 TCATCGATGA
1467848 ATGAAAAGGGATAGCCTCGGCTATCGAAT
1 ATGAAAAGGGATAGCCTCGGCTATCGAAT
** ** * *
1467877 GCGAAAAGGGATAGGTTCGGCTATTGATT
1 ATGAAAAGGGATAGCCTCGGCTATCGAAT
1467906 ATGAAAAG
1 ATGAAAAG
1467914 AGATGGTGAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.30, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATAGCCTCGGCTATCGAAT
Found at i:1467938 original size:29 final size:30
Alignment explanation
Indices: 1467906--1467971 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
1467896 GCTATTGATT
1467906 ATGAAAAGAGATGGTGACGACCATC-AACA
1 ATGAAAAGAGATGGTGACGACCATCTAACA
* * *
1467935 ATGAAAAGGGATGTTGACGACCATCTAACT
1 ATGAAAAGAGATGGTGACGACCATCTAACA
1467965 ATGAAAA
1 ATGAAAA
1467972 AGAATGGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 23 0.70
30 10 0.30
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (30 bp):
ATGAAAAGAGATGGTGACGACCATCTAACA
Found at i:1468087 original size:90 final size:90
Alignment explanation
Indices: 1467934--1468097 Score: 211
Period size: 90 Copynumber: 1.8 Consensus size: 90
1467924 GACCATCAAC
* * * * * *
1467934 AATGAAAAGGGATGTTGACGACCATCTAACTATGAAAAAGAATGGCTTCGGCTATTGATTTATGA
1 AATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAAGAATAGCTCCGGCTATCGAATTATGA
*
1467999 AAATGGATAGCTTCGAGTATCAAAT
66 AAAGGGATAGCTTCGAGTATCAAAT
* * * * * *
1468024 AATGTAAAGGGATGGTGATGACCATCAAATTATGAAAAAGGATAGCTCCGGCTGTCGAATTATGG
1 AATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAAGAATAGCTCCGGCTATCGAATTATGA
1468089 AAAGGGATA
66 AAAGGGATA
1468098 ACTTTGATTA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 61 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.26
Consensus pattern (90 bp):
AATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAAGAATAGCTCCGGCTATCGAATTATGA
AAAGGGATAGCTTCGAGTATCAAAT
Found at i:1469706 original size:15 final size:15
Alignment explanation
Indices: 1469686--1469726 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
1469676 AAACTTGTAG
*
1469686 AAGTTAAATTAGACT
1 AAGTTAAATTAAACT
1469701 AAGTTAAATTAAACT
1 AAGTTAAATTAAACT
*
1469716 AA-TGAAATTAA
1 AAGTTAAATTAA
1469727 GTAAAATAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (15 bp):
AAGTTAAATTAAACT
Found at i:1470946 original size:42 final size:43
Alignment explanation
Indices: 1470899--1470984 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 43
1470889 AGGGTAAATC
* * *
1470899 CAACAACGCAAGTTTAGCTTCTCCT-TTTTTAAATTATTTTTT
1 CAACAACCCAAGATTAGCTTCTCCTCCTTTTAAATTATTTTTT
* *
1470941 CAACAACCCAAGATTATCTTCTTCTCCTTTTAAATTATTTTTT
1 CAACAACCCAAGATTAGCTTCTCCTCCTTTTAAATTATTTTTT
1470984 C
1 C
1470985 TAGGATAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 21 0.55
43 17 0.45
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.47
Consensus pattern (43 bp):
CAACAACCCAAGATTAGCTTCTCCTCCTTTTAAATTATTTTTT
Found at i:1473021 original size:42 final size:43
Alignment explanation
Indices: 1472907--1473023 Score: 182
Period size: 43 Copynumber: 2.7 Consensus size: 43
1472897 CCCGATTTGA
*
1472907 GATTTACGTGTAAGACCATGTCTGAGATATTGGCGTCGTATAT
1 GATTTACGTGTAAGACCATGTCTGAGACATTGGCGTCGTATAT
* * *
1472950 GATTTACATGTAAGACCATGTTTGGGACATTGGCGTCGTATAT
1 GATTTACGTGTAAGACCATGTCTGAGACATTGGCGTCGTATAT
*
1472993 GA-TTACGTGTAAGACCCTGTCTGAGACATTG
1 GATTTACGTGTAAGACCATGTCTGAGACATTG
1473024 ACATCGTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 25 0.38
43 41 0.62
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGAGACATTGGCGTCGTATAT
Found at i:1473068 original size:85 final size:86
Alignment explanation
Indices: 1472874--1473068 Score: 207
Period size: 85 Copynumber: 2.3 Consensus size: 86
1472864 GACATTGCGT
* *
1472874 AAGACCACGTCTAGGACGTTGGCCCCGATTTGAGATTTACGTGTAAGACCATGTCTGAGATATTG
1 AAGACCACGTCTAGGACGTTGGCCCCGATAT-AGATTTACGTGTAAGACCATGTCTGAGACATTG
* * *
1472939 GCGTCGTATATGATTTACATGT
65 ACATCGTATATGATTTACATGA
* * * * ** *
1472961 AAGACCATGTTTGGGACATTGGCGTCG-TATATGA-TTACGTGTAAGACCCTGTCTGAGACATTG
1 AAGACCACGTCTAGGACGTTGGCCCCGATATA-GATTTACGTGTAAGACCATGTCTGAGACATTG
* *
1473024 ACATCGTTTTTTGA-TTACATGA
65 ACATCG-TATATGATTTACATGA
*
1473046 AAGACCACGTCTAGGATGTTGGC
1 AAGACCACGTCTAGGACGTTGGC
1473069 ATTTTACGAG
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
85 57 0.66
86 9 0.10
87 21 0.24
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (86 bp):
AAGACCACGTCTAGGACGTTGGCCCCGATATAGATTTACGTGTAAGACCATGTCTGAGACATTGA
CATCGTATATGATTTACATGA
Found at i:1473884 original size:22 final size:22
Alignment explanation
Indices: 1473850--1474249 Score: 408
Period size: 22 Copynumber: 18.2 Consensus size: 22
1473840 AGTAAAAATT
* *
1473850 TGTTGATTAAATGCTATCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * *
1473872 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
* *
1473894 TGTTGATTAAATGCTCTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* *
1473916 TGTTGATTTAATGTTGTCCAAC
1 TGTTGATTAAATGTTGTCCAAA
**
1473938 TGTTGATTAAATGTCATCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * * *
1473960 TATTGATTGAATGTTGCCCAAT
1 TGTTGATTAAATGTTGTCCAAA
*
1473982 TGTTGA-TAAATGCTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* *
1474003 TGTTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
*
1474025 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* *
1474047 TGTTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
* *
1474069 TATTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* * * *
1474091 TATTGATTGAATGTTGTCTAAT
1 TGTTGATTAAATGTTGTCCAAA
1474113 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* *
1474135 TGTTGATTTAATGTTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
* * *
1474157 TCTTGATTAAAT-TCTTTCAAAA
1 TGTTGATTAAATGT-TGTCCAAA
* * * * *
1474179 TTTTGATTGATTGCTGTCCAAT
1 TGTTGATTAAATGTTGTCCAAA
*
1474201 TGTTGATTAAATGTTATCCAAA
1 TGTTGATTAAATGTTGTCCAAA
* **
1474223 TGTTAATTAAATGTTGTCTGAA
1 TGTTGATTAAATGTTGTCCAAA
1474245 TGTTG
1 TGTTG
1474250 GATAATTGCT
Statistics
Matches: 300, Mismatches: 75, Indels: 6
0.79 0.20 0.02
Matches are distributed among these distances:
21 18 0.06
22 282 0.94
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (22 bp):
TGTTGATTAAATGTTGTCCAAA
Found at i:1474015 original size:11 final size:11
Alignment explanation
Indices: 1474000--1474150 Score: 62
Period size: 11 Copynumber: 13.7 Consensus size: 11
1473990 AATGCTGTCC
1474000 AAATGTTGATT
1 AAATGTTGATT
* *
1474011 TAATGTTG-TCC
1 AAATGTTGAT-T
*
1474022 AATTGTTGATT
1 AAATGTTGATT
* *
1474033 AAATGCTG-TCC
1 AAATGTTGAT-T
1474044 AAATGTTGATT
1 AAATGTTGATT
* *
1474055 TAATGTTG-TCC
1 AAATGTTGAT-T
* *
1474066 AATTATTGATT
1 AAATGTTGATT
* *
1474077 AAATGCTG-TCC
1 AAATGTTGAT-T
*
1474088 AAATATTGATT
1 AAATGTTGATT
*
1474099 GAATGTTG-TCT
1 AAATGTTGAT-T
*
1474110 AATTGTTGATT
1 AAATGTTGATT
*
1474121 AAATGTTG-TCC
1 AAATGTTGAT-T
1474132 AAATGTTGATT
1 AAATGTTGATT
*
1474143 TAATGTTG
1 AAATGTTG
1474151 TCCAATTCTT
Statistics
Matches: 97, Mismatches: 31, Indels: 24
0.64 0.20 0.16
Matches are distributed among these distances:
10 6 0.06
11 85 0.88
12 6 0.06
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (11 bp):
AAATGTTGATT
Found at i:1474249 original size:44 final size:44
Alignment explanation
Indices: 1473849--1474240 Score: 527
Period size: 44 Copynumber: 8.9 Consensus size: 44
1473839 AAGTAAAAAT
* *
1473849 TTGTTGATTAAATGCTATCCAAATATTGATTGAATGTTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* *
1473893 TTGTTGATTAAATGCTCTCCAAATGTTGATTTAATGTTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* * * *
1473937 CTGTTGATTAAATG-TCATCCAAATATTGATTGAATGTTGCCCAA
1 TTGTTGATTAAATGCT-GTCCAAATGTTGATTGAATGTTGTCCAA
*
1473981 TTGTTGA-TAAATGCTGTCCAAATGTTGATTTAATGTTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
*
1474024 TTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGTTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* * *
1474068 TTATTGATTAAATGCTGTCCAAATATTGATTGAATGTTGTCTAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* *
1474112 TTGTTGATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* * * * * * *
1474156 TTCTTGATTAAATTCTTTCAAAATTTTGATTGATTGCTGTCCAA
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
* * * *
1474200 TTGTTGATTAAATGTTATCCAAATGTTAATTAAATGTTGTC
1 TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTC
1474241 TGAATGTTGG
Statistics
Matches: 304, Mismatches: 41, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
43 38 0.12
44 266 0.88
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.43
Consensus pattern (44 bp):
TTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGTTGTCCAA
Found at i:1474546 original size:29 final size:29
Alignment explanation
Indices: 1474504--1474561 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
1474494 TGCTTGATAA
1474504 TTAGTTAAAGATATGGATTGTTCTTACTT
1 TTAGTTAAAGATATGGATTGTTCTTACTT
1474533 TTAGTTAAAGATATGGATTGTTCTTACTT
1 TTAGTTAAAGATATGGATTGTTCTTACTT
1474562 AGTATGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.48
Consensus pattern (29 bp):
TTAGTTAAAGATATGGATTGTTCTTACTT
Found at i:1476437 original size:50 final size:50
Alignment explanation
Indices: 1476366--1476488 Score: 138
Period size: 50 Copynumber: 2.5 Consensus size: 50
1476356 TTATGAGAGA
* * * ** *
1476366 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCG
1 TAAGGCCATGTCTGAGACATGGCGTGGGCACCGAGATGAGAACTCCCACG
* * *
1476416 TAAGGCCATGTTTGAGACATGGCGTGGGCACCGATATGAGAACTCCCATG
1 TAAGGCCATGTCTGAGACATGGCGTGGGCACCGAGATGAGAACTCCCACG
* * *
1476466 TAAGGCCATATCTGGGATATGGC
1 TAAGGCCATGTCTGAGACATGGC
1476489 ATTGGCAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (50 bp):
TAAGGCCATGTCTGAGACATGGCGTGGGCACCGAGATGAGAACTCCCACG
Found at i:1479322 original size:26 final size:26
Alignment explanation
Indices: 1479293--1479358 Score: 100
Period size: 25 Copynumber: 2.6 Consensus size: 26
1479283 ATTAAAGGCC
1479293 TTATTACAAAAACAAAACCCAACTTA
1 TTATTACAAAAACAAAACCCAACTTA
1479319 TTATTAC-AAAACAAAACCCAACTTA
1 TTATTACAAAAACAAAACCCAACTTA
*
1479344 TTGTTA-AAAATACAA
1 TTATTACAAAA-ACAA
1479359 TAAAAAAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 26 0.70
26 11 0.30
ACGTcount: A:0.53, C:0.20, G:0.02, T:0.26
Consensus pattern (26 bp):
TTATTACAAAAACAAAACCCAACTTA
Found at i:1479636 original size:28 final size:29
Alignment explanation
Indices: 1479566--1479647 Score: 103
Period size: 28 Copynumber: 2.8 Consensus size: 29
1479556 TCAGTGCAAT
* * *
1479566 GTGGGCCTTAGCCCATTACAGTAATAGTGT
1 GTGGGCCTTAGCCCAATACAGTAACAG-GA
*
1479596 GTGGGTCTTAGCCCAATACAGTAACA-GA
1 GTGGGCCTTAGCCCAATACAGTAACAGGA
*
1479624 GTGGGCCTTAGCCCAATATAGTAA
1 GTGGGCCTTAGCCCAATACAGTAA
1479648 TCAGTACAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 23 0.50
30 23 0.50
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (29 bp):
GTGGGCCTTAGCCCAATACAGTAACAGGA
Found at i:1479826 original size:26 final size:26
Alignment explanation
Indices: 1479758--1479829 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
1479748 ACACCAATAT
* *
1479758 CGCAGCAAAGCTGCCAATAATAGTGA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
*
1479784 CACAGCAAAGCTGCCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
*
1479810 CGCAGCAGAGCTGCCAGTAA
1 CGCAGCAAAGCTGCCAGTAA
1479830 CAGTCTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.38, C:0.25, G:0.24, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:1480028 original size:27 final size:28
Alignment explanation
Indices: 1479998--1480180 Score: 177
Period size: 27 Copynumber: 6.8 Consensus size: 28
1479988 TCAATTTCTA
*
1479998 GGGGTATATCAGTCATTTTACCCTAT-G
1 GGGGTATTTCAGTCATTTTACCCTATCG
* *
1480025 GGGGTATTTCGGTCATTTTA-CCTTTCG
1 GGGGTATTTCAGTCATTTTACCCTATCG
* *
1480052 AGGGTATTT-TGATCATTTTACCCT-TCG
1 GGGGTATTTCAG-TCATTTTACCCTATCG
** * *
1480079 AAGGTATTTCAATCATTTTACCCT-TTG
1 GGGGTATTTCAGTCATTTTACCCTATCG
*
1480106 GGGGTATTTCAGTCATTTTACCC--TCA
1 GGGGTATTTCAGTCATTTTACCCTATCG
*
1480132 GGGGTATTTCTA-TCATTTTACCC-ATCA
1 GGGGTATTTC-AGTCATTTTACCCTATCG
*
1480159 AGGGTATTTCAGTCATTTTACC
1 GGGGTATTTCAGTCATTTTACC
1480181 ATGAATCACA
Statistics
Matches: 134, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 28 0.21
27 103 0.77
28 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.42
Consensus pattern (28 bp):
GGGGTATTTCAGTCATTTTACCCTATCG
Found at i:1481132 original size:17 final size:19
Alignment explanation
Indices: 1481096--1481135 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
1481086 AATTGGCAAC
*
1481096 AAGAGAAGAAGAAATTGAA
1 AAGAGAAGAAGAAATAGAA
1481115 AAGA-AAGAAGAAA-AGAA
1 AAGAGAAGAAGAAATAGAA
1481132 AAGA
1 AAGA
1481136 TGAGGGAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.05
Consensus pattern (19 bp):
AAGAGAAGAAGAAATAGAA
Found at i:1486595 original size:43 final size:43
Alignment explanation
Indices: 1486496--1486652 Score: 219
Period size: 43 Copynumber: 3.7 Consensus size: 43
1486486 AATGTGGCAC
* * *
1486496 CGTGTAAGACCATGTCTGGGACGTTGGCCTCGATTTGA-GATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCGTC-ATAT-ATGATTTA
1486540 CGTGTAAGACCATGTCTGGGACATTGGCGTCATATATGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCGTCATATATGATTTA
*
1486583 CGTGTAAGACCATGTCTGGGACATTAGCGTCATATATGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCGTCATATATGATTTA
* * *
1486625 CATGTAAGACCCTGTCTGGGACAATGGC
1 CGTGTAAGACCATGTCTGGGACATTGGC
1486653 ATCGTTGTTT
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 28 0.27
43 47 0.45
44 29 0.28
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCGTCATATATGATTTA
Found at i:1486677 original size:85 final size:87
Alignment explanation
Indices: 1486501--1486689 Score: 197
Period size: 85 Copynumber: 2.2 Consensus size: 87
1486491 GGCACCGTGT
* * * * *
1486501 AAGACCATGTCTGGGACGTTGGCCTCGATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTG
1 AAGACCATGTCTGGGACATTAGCCTCGATATGAGATTTACATGTAAGACCATGTCTGGGACAATG
* * *
1486566 GCGTCATATATGATTTACGTGT
66 GCATCATATATGATTTACATGA
* *
1486588 AAGACCATGTCTGGGACATTAGCGTC-ATAT-ATGA-TTACATGTAAGACCCTGTCTGGGACAAT
1 AAGACCATGTCTGGGACATTAGCCTCGATATGA-GATTTACATGTAAGACCATGTCTGGGACAAT
* * *
1486650 GGCATCGTTGTTTGA-TTACATGA
65 GGCATC-ATATATGATTTACATGA
**
1486673 AAGACCACATCTGGGAC
1 AAGACCATGTCTGGGAC
1486690 GTTGGCATGG
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
85 52 0.61
86 10 0.12
87 23 0.27
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (87 bp):
AAGACCATGTCTGGGACATTAGCCTCGATATGAGATTTACATGTAAGACCATGTCTGGGACAATG
GCATCATATATGATTTACATGA
Found at i:1487511 original size:22 final size:22
Alignment explanation
Indices: 1487482--1487811 Score: 354
Period size: 22 Copynumber: 15.0 Consensus size: 22
1487472 AATTTTTTTT
*
1487482 ATTAAATGTTGTCCAAATATTG
1 ATTAAATGTTGTCCAAATGTTG
* *
1487504 ATTGAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTG
*
1487526 ATTAAATGTTGTTCAAATGTTG
1 ATTAAATGTTGTCCAAATGTTG
* *
1487548 ATTTAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTG
*
1487570 ATTAAATGTTGTCCAAATATTG
1 ATTAAATGTTGTCCAAATGTTG
* * *
1487592 ATTGAATGCTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTG
*
1487614 ATTAAATATTGTCCAAATGTTG
1 ATTAAATGTTGTCCAAATGTTG
* * * *
1487636 ATTTAATGCTGTCCAATTGTTT
1 ATTAAATGTTGTCCAAATGTTG
* *
1487658 ATTAAATGTCGTCCAAAAGTTG
1 ATTAAATGTTGTCCAAATGTTG
* *
1487680 ATTTAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTG
* ** * *
1487702 ATTTAATACTGTCCAATTATTG
1 ATTAAATGTTGTCCAAATGTTG
* *
1487724 ATTAAATGCTATCCAAATGTTG
1 ATTAAATGTTGTCCAAATGTTG
* * * *
1487746 ATTGATTGTTGTTCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTG
* *
1487768 ACTAAATGTTGTCCAAATGTTA
1 ATTAAATGTTGTCCAAATGTTG
**
1487790 ATTAAATGTTGTCTGAATGTTG
1 ATTAAATGTTGTCCAAATGTTG
1487812 GATAATTGCT
Statistics
Matches: 249, Mismatches: 59, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 249 1.00
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (22 bp):
ATTAAATGTTGTCCAAATGTTG
Found at i:1487535 original size:11 final size:11
Alignment explanation
Indices: 1487482--1487580 Score: 62
Period size: 11 Copynumber: 9.0 Consensus size: 11
1487472 AATTTTTTTT
1487482 ATTAAATGTTG
1 ATTAAATGTTG
* *
1487493 -TCCAAATATTG
1 AT-TAAATGTTG
*
1487504 ATTGAATGTTG
1 ATTAAATGTTG
* *
1487515 -TCCAATTGTTG
1 AT-TAAATGTTG
1487526 ATTAAATGTTG
1 ATTAAATGTTG
1487537 -TTCAAATGTTG
1 ATT-AAATGTTG
*
1487548 ATTTAATGTTG
1 ATTAAATGTTG
* *
1487559 -TCCAATTGTTG
1 AT-TAAATGTTG
1487570 ATTAAATGTTG
1 ATTAAATGTTG
1487581 TCCAAATATT
Statistics
Matches: 64, Mismatches: 16, Indels: 16
0.67 0.17 0.17
Matches are distributed among these distances:
10 5 0.08
11 54 0.84
12 5 0.08
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.45
Consensus pattern (11 bp):
ATTAAATGTTG
Found at i:1487811 original size:44 final size:44
Alignment explanation
Indices: 1487482--1487811 Score: 390
Period size: 44 Copynumber: 7.5 Consensus size: 44
1487472 AATTTTTTTT
* *
1487482 ATTAAATGTTGTCCAAATATTGATTGAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
*
1487526 ATTAAATGTTGTTCAAATGTTGATTTAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
* * *
1487570 ATTAAATGTTGTCCAAATATTGATTGAATGCTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
* * *
1487614 ATTAAATATTGTCCAAATGTTGATTTAATGCTGTCCAATTGTTT
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
* *
1487658 ATTAAATGTCGTCCAAAAGTTGATTTAATGTTGTCCAATTGTTG
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
* ** * * * * * *
1487702 ATTTAATACTGTCCAATTATTGATTAAATGCTATCCAAATGTTG
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
* * * * * * * *
1487746 ATTGATTGTTGTTCAATTGTTGACTAAATGTTGTCCAAATGTTA
1 ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
**
1487790 ATTAAATGTTGTCTGAATGTTG
1 ATTAAATGTTGTCCAAATGTTG
1487812 GATAATTGCT
Statistics
Matches: 243, Mismatches: 43, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 243 1.00
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (44 bp):
ATTAAATGTTGTCCAAATGTTGATTTAATGTTGTCCAATTGTTG
Found at i:1500149 original size:25 final size:25
Alignment explanation
Indices: 1500115--1500172 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
1500105 TCATGTACAT
*
1500115 GTATGCTCATATT-AGTTGT-GAATTG
1 GTATGCTCAT-TTGAGTTGTAG-ATCG
1500140 GTATGCTCATTTGAGTTGTAGATCG
1 GTATGCTCATTTGAGTTGTAGATCG
1500165 GTATGCTC
1 GTATGCTC
1500173 TCGCGAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 2 0.07
25 27 0.90
26 1 0.03
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.41
Consensus pattern (25 bp):
GTATGCTCATTTGAGTTGTAGATCG
Found at i:1500193 original size:25 final size:25
Alignment explanation
Indices: 1500165--1500250 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
1500155 TTGTAGATCG
*
1500165 GTATGCTCTCGCGAGCTATAAATCC
1 GTATGCTCTCACGAGCTATAAATCC
* *
1500190 GTATGCTCTCATGAGCTATAAATCT
1 GTATGCTCTCACGAGCTATAAATCC
* *
1500215 GTATGCTCTCACGAGATATAAAT-T
1 GTATGCTCTCACGAGCTATAAATCC
1500239 GATATGCTCTCA
1 G-TATGCTCTCA
1500251 TGAGTTGTGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
24 2 0.04
25 53 0.96
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATCC
Found at i:1508312 original size:50 final size:50
Alignment explanation
Indices: 1508212--1508449 Score: 262
Period size: 50 Copynumber: 4.6 Consensus size: 50
1508202 GATGAGATCT
*
1508212 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCC
** *
1508268 CATGTAAGACCATGTCCAGGACATGGCGTTGGCACCGAGATGAGAGGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA-GGTCC
* *
1508319 CAT-TAAGACCATGTCTGGGACATGGCGTTCGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
** * * * **
1508368 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * *
1508418 CATGTAAGACCATATCTTGGATATGGCATTGG
1 CATGTAAGACCATGTCTGGGACATGGCATTGG
1508450 AAGTACAAGA
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
49 6 0.04
50 109 0.69
51 8 0.05
53 3 0.02
55 1 0.01
56 31 0.20
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
Found at i:1514660 original size:50 final size:50
Alignment explanation
Indices: 1514605--1514888 Score: 320
Period size: 50 Copynumber: 5.7 Consensus size: 50
1514595 CATTGAGATT
* *
1514605 ATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
*
1514655 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
* * * * *
1514705 ATAAGACGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** * * *
1514755 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** * * * * *
1514805 ATGAGAACTCCAATGTAAGACCATATCTAGGATATGGCATTGGCA--GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AG
* * ** *
1514854 AAGAAACATCCCATGTAAGACTATGTCTGGGACAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACAT
1514889 AGCTTTCGCA
Statistics
Matches: 194, Mismatches: 39, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
49 27 0.14
50 167 0.86
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:1514748 original size:100 final size:100
Alignment explanation
Indices: 1514550--1514849 Score: 336
Period size: 100 Copynumber: 3.0 Consensus size: 100
1514540 ACATGAAGAG
** * * *
1514550 GATGAGA--TCCCATGTAAGACCATGTCTAGGTTATGGCATTGTCATCATTGAGATTATGAGAGG
1 GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA-C--CGAGA-TA--AGACG
*
1514613 TCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
60 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1514654 GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATAAGACGTCCCAT
1 GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATAAGACGTCCCAT
* *
1514719 GTAAGACCATGTTTGGGACATGGCGTTGGCACTGA
66 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
** * * * * * *
1514754 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC-TCCAA
1 GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATAAG-ACGTCCCA
* * * *
1514818 TGTAAGACCATATCTAGGATATGGCATTGGCA
65 TGTAAGACCATGTCTGGGACATGGCGTTGGCA
1514850 GTACAAGAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
100 122 0.71
101 2 0.01
102 2 0.01
103 4 0.02
104 7 0.04
105 1 0.01
106 34 0.20
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (100 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATAAGACGTCCCAT
GTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
Found at i:1526181 original size:27 final size:25
Alignment explanation
Indices: 1526141--1526206 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
1526131 TCTGACCCAT
* *
1526141 AGCTCATGTGAGCAGGTCCATTTTCAC
1 AGCTCGTGTGAGCA-GTCCA-ATTCAC
* * *
1526168 AGCTCGTGTAAGCATTCTAATTCAC
1 AGCTCGTGTGAGCAGTCCAATTCAC
1526193 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
1526207 TACATGTACA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 18 0.55
26 3 0.09
27 12 0.36
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCTCGTGTGAGCAGTCCAATTCAC
Found at i:1544624 original size:18 final size:18
Alignment explanation
Indices: 1544603--1544640 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1544593 TTGTTTCATA
*
1544603 TTCTTTTTCATTCTTTTT
1 TTCTTTTTCACTCTTTTT
*
1544621 TTCTTTTTCGCTCTTTTT
1 TTCTTTTTCACTCTTTTT
1544639 TT
1 TT
1544641 TACTTTCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (18 bp):
TTCTTTTTCACTCTTTTT
Found at i:1556008 original size:22 final size:22
Alignment explanation
Indices: 1555983--1556028 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
1555973 ACTTTAAAGT
*
1555983 GAAATGACGTAGATGGTAATTA
1 GAAAGGACGTAGATGGTAATTA
1556005 GAAAGGACGTAGATGGTAATTA
1 GAAAGGACGTAGATGGTAATTA
1556027 GA
1 GA
1556029 CCATTTGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.30, T:0.24
Consensus pattern (22 bp):
GAAAGGACGTAGATGGTAATTA
Found at i:1557977 original size:47 final size:47
Alignment explanation
Indices: 1557901--1557994 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
1557891 ATGAGGCAAA
1557901 AATGTGTATTAGATTTGAAGATAGGTTGAATAATGATATCCGTATGG
1 AATGTGTATTAGATTTGAAGATAGGTTGAATAATGATATCCGTATGG
1557948 AATGTGTATTAGATTTGAAGAT-GGCTTGAATAATGATATCCGTATGG
1 AATGTGTATTAGATTTGAAGATAGG-TTGAATAATGATATCCGTATGG
1557995 CTATAGTAGC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 2 0.04
47 44 0.96
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (47 bp):
AATGTGTATTAGATTTGAAGATAGGTTGAATAATGATATCCGTATGG
Found at i:1568142 original size:41 final size:41
Alignment explanation
Indices: 1568035--1568156 Score: 136
Period size: 41 Copynumber: 3.0 Consensus size: 41
1568025 ATAATAAAGA
* * * *
1568035 TGAATTGCACATACGTGCCCCTATTTGTACTTCAATACGCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCGATACCCC
* *** *
1568076 TGAAATGCACATGTTTGCCCGTGTTTGTACTTCGATACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCGATACCCC
* * *
1568117 TGAATTGCACATACATGCCCTTGTTTGCACTTCGGTACCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCGATACCC
1568157 TGGATGTACT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCCTGTTTGTACTTCGATACCCC
Found at i:1577172 original size:24 final size:25
Alignment explanation
Indices: 1577144--1577221 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
1577134 GAATCAGTAT
*
1577144 GCTCTTATGAGCTGTA-AACGGTAA
1 GCTCTTATGAGCTGAATAACGGTAA
* *
1577168 GCTCTTCTGAGTTGAATAACGGTAA
1 GCTCTTATGAGCTGAATAACGGTAA
* *
1577193 GCTCCTT-CGACCTGAATAACGGTAA
1 GCT-CTTATGAGCTGAATAACGGTAA
1577218 GCTC
1 GCTC
1577222 ATGCGAGCTG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
24 14 0.30
25 29 0.63
26 3 0.07
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
GCTCTTATGAGCTGAATAACGGTAA
Found at i:1577194 original size:25 final size:24
Alignment explanation
Indices: 1577160--1577258 Score: 90
Period size: 25 Copynumber: 4.0 Consensus size: 24
1577150 ATGAGCTGTA
**
1577160 AACGGTAAGCTCTTCTGAGTTGAAT
1 AACGGTAAGCTCTTC-GACCTGAAT
1577185 AACGGTAAGCTCCTTCGACCTGAAT
1 AACGGTAAGCT-CTTCGACCTGAAT
* * *
1577210 AACGGTAAGCTCATGCGAGCTGAGT
1 AACGGTAAGCTC-TTCGACCTGAAT
** *
1577235 ATTGGTAAGCTCGTTCGAGCTGAA
1 AACGGTAAGCTC-TTCGACCTGAA
1577259 ATCGATAACC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.02
25 57 0.92
26 4 0.06
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (24 bp):
AACGGTAAGCTCTTCGACCTGAAT
Found at i:1578712 original size:42 final size:42
Alignment explanation
Indices: 1578653--1578739 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
1578643 CGATTCTTCA
*
1578653 CTATATGTTTATGTTTAAGATTCGCATATGATTTCTAACGAT
1 CTATATCTTTATGTTTAAGATTCGCATATGATTTCTAACGAT
* *
1578695 CTATATCTTTATGTTTAAGATTCGCATATGATTTTTGACGAT
1 CTATATCTTTATGTTTAAGATTCGCATATGATTTCTAACGAT
1578737 CTA
1 CTA
1578740 AAGCTGCTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.46
Consensus pattern (42 bp):
CTATATCTTTATGTTTAAGATTCGCATATGATTTCTAACGAT
Found at i:1581560 original size:54 final size:54
Alignment explanation
Indices: 1581478--1581588 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 54
1581468 ATACCTTTGT
* * *
1581478 CACGAATCTAATGGACTCAATAGGTAAATTCTTACTAGAAACTAAATTCATGCA
1 CACGAATCCAATGGACTCAACAAGTAAATTCTTACTAGAAACTAAATTCATGCA
* *
1581532 CACGAATCCAGTGGACTCAACAAGTAAATTCTTACTAGACACTAAATTCATGCA
1 CACGAATCCAATGGACTCAACAAGTAAATTCTTACTAGAAACTAAATTCATGCA
1581586 CAC
1 CAC
1581589 ATATCAATGG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (54 bp):
CACGAATCCAATGGACTCAACAAGTAAATTCTTACTAGAAACTAAATTCATGCA
Found at i:1584884 original size:25 final size:25
Alignment explanation
Indices: 1584850--1584931 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
1584840 ACGAGCTATA
*
1584850 AACGGTAAGCTCCTCCGAGCTGAAT
1 AACGGTAAGCTCATCCGAGCTGAAT
*
1584875 AACGGTAAGCTCATGCGAGCT-AAGT
1 AACGGTAAGCTCATCCGAGCTGAA-T
* *
1584900 ATCGGTAAGCTCATTCGAGCTGAA-
1 AACGGTAAGCTCATCCGAGCTGAAT
*
1584924 ATCGGTAA
1 AACGGTAA
1584932 CCCTAATGGC
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
24 10 0.20
25 39 0.76
26 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (25 bp):
AACGGTAAGCTCATCCGAGCTGAAT
Found at i:1585680 original size:217 final size:217
Alignment explanation
Indices: 1585305--1585735 Score: 817
Period size: 217 Copynumber: 2.0 Consensus size: 217
1585295 GTAATTTAGT
1585305 CGTTATCTCATAAAAATGGAAAAGGAAGAAATTCCACCACAACCCATCATAGCCGAGTATCAATC
1 CGTTATCTCATAAAAATGGAAAAGGAAGAAATTCCACCACAACCCATCATAGCCGAGTATCAATC
*
1585370 TAGTCCCTAGCAAGCCCTATATTTCATTTATTTCACAATTTCACCATGTAAAATTTTTTATTTTT
66 TAGTCCCTAACAAGCCCTATATTTCATTTATTTCACAATTTCACCATGTAAAATTTTTTATTTTT
** *
1585435 CAATTTTATCCCTAATTGATAATTTCATGAAAAATTCCTTTACAAAAGTTGTTTATCTAACAACA
131 CAAAGTTATCCCTAATTGATAATTTCATGAAAAATTCCTTTACAAAAGTTGTTTACCTAACAACA
1585500 ACCATTCATTTCCTATCATAGC
196 ACCATTCATTTCCTATCATAGC
*
1585522 CGTTATCTCATAAAAATGGAAAAGGAAGAAATTCCACCACAACCTATCATAGCCGAGTATCAATC
1 CGTTATCTCATAAAAATGGAAAAGGAAGAAATTCCACCACAACCCATCATAGCCGAGTATCAATC
1585587 TAGTCCCTAACAAGCCCTATATTTCATTTATTTCACAATTTCACCATGTAAAATTTTTTATTTTT
66 TAGTCCCTAACAAGCCCTATATTTCATTTATTTCACAATTTCACCATGTAAAATTTTTTATTTTT
1585652 CAAAGTTATCCCTAATTGATAATTTCATGAAAAATTCCTTTACAAAAGTTGTTTACCTAACAACA
131 CAAAGTTATCCCTAATTGATAATTTCATGAAAAATTCCTTTACAAAAGTTGTTTACCTAACAACA
1585717 ACCATTCATTTCCTATCAT
196 ACCATTCATTTCCTATCAT
1585736 CAAACATCAA
Statistics
Matches: 209, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
217 209 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (217 bp):
CGTTATCTCATAAAAATGGAAAAGGAAGAAATTCCACCACAACCCATCATAGCCGAGTATCAATC
TAGTCCCTAACAAGCCCTATATTTCATTTATTTCACAATTTCACCATGTAAAATTTTTTATTTTT
CAAAGTTATCCCTAATTGATAATTTCATGAAAAATTCCTTTACAAAAGTTGTTTACCTAACAACA
ACCATTCATTTCCTATCATAGC
Found at i:1591177 original size:24 final size:24
Alignment explanation
Indices: 1591127--1591173 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
1591117 CCATGCCAAA
1591127 CTTCAAGATCTGATTCGGCTTCGT
1 CTTCAAGATCTGATTCGGCTTCGT
1591151 CTTCAAGATC-GATTCGGCTTCGT
1 CTTCAAGATCTGATTCGGCTTCGT
1591174 TCTTAGGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (24 bp):
CTTCAAGATCTGATTCGGCTTCGT
Found at i:1595429 original size:22 final size:22
Alignment explanation
Indices: 1595398--1595457 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
1595388 CCTTTTTCAA
*
1595398 CCATTTCCATTTCGTACCAAAT
1 CCATTACCATTTCGTACCAAAT
* **
1595420 CCATTACCATTTCATTTCAAAT
1 CCATTACCATTTCGTACCAAAT
* *
1595442 CCCTTACCGTTTCGTA
1 CCATTACCATTTCGTA
1595458 ACAATTCCCA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.38
Consensus pattern (22 bp):
CCATTACCATTTCGTACCAAAT
Found at i:1595799 original size:17 final size:17
Alignment explanation
Indices: 1595776--1595812 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
1595766 AAAAGAGTTC
1595776 GAAAAAAAAATTTAAAATT
1 GAAAAAAAAA--TAAAATT
1595795 GAAAAAAAAATAAAATT
1 GAAAAAAAAATAAAATT
1595812 G
1 G
1595813 TATACGGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (17 bp):
GAAAAAAAAATAAAATT
Found at i:1598033 original size:19 final size:19
Alignment explanation
Indices: 1598005--1598049 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
1597995 GCGAAAATAC
*
1598005 AAAAGAAAAGAAAAATGAAA
1 AAAAG-AAAGAAAAATCAAA
*
1598025 AAAAGAAAGAAAATTCAAA
1 AAAAGAAAGAAAAATCAAA
1598044 AAAAGA
1 AAAAGA
1598050 GAATGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (19 bp):
AAAAGAAAGAAAAATCAAA
Found at i:1598063 original size:15 final size:15
Alignment explanation
Indices: 1598025--1598090 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
1598015 AAAAATGAAA
* *
1598025 AAAAGAAAGAAAATTC
1 AAAAGAAAGAGAA-TG
1598041 AAAA-AAAGAGAATG
1 AAAAGAAAGAGAATG
*
1598055 AAAAGAAAG-CAA-G
1 AAAAGAAAGAGAATG
*
1598068 AAAAGAAA-AGGATG
1 AAAAGAAAGAGAATG
1598082 AAAAAGAAA
1 -AAAAGAAA
1598091 CATTGAGTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
13 10 0.24
14 8 0.20
15 19 0.46
16 4 0.10
ACGTcount: A:0.71, C:0.03, G:0.20, T:0.06
Consensus pattern (15 bp):
AAAAGAAAGAGAATG
Found at i:1599920 original size:19 final size:19
Alignment explanation
Indices: 1599896--1599945 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
1599886 GTCCAAACCG
1599896 AATTAATTAGACTTAGTTT
1 AATTAATTAGACTTAGTTT
** *
1599915 AATTAATTGAGTTTTATTTT
1 AATTAATT-AGACTTAGTTT
*
1599935 AATTATTTAGA
1 AATTAATTAGA
1599946 TTAATGTTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
AATTAATTAGACTTAGTTT
Found at i:1600841 original size:22 final size:22
Alignment explanation
Indices: 1600798--1600862 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
1600788 CCTTTTTGAA
*
1600798 CCATTTCCATTTTCGTACCAAAT
1 CCATTACCA-TTTCGTACCAAAT
**
1600821 CCATTACCATTTCGTTTCAAAT
1 CCATTACCATTTCGTACCAAAT
* * *
1600843 CCCTTACCGTTTCATACCAA
1 CCATTACCATTTCGTACCAA
1600863 TTCCCAAATA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 26 0.76
23 8 0.24
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.37
Consensus pattern (22 bp):
CCATTACCATTTCGTACCAAAT
Found at i:1609065 original size:43 final size:43
Alignment explanation
Indices: 1608798--1609048 Score: 360
Period size: 43 Copynumber: 5.9 Consensus size: 43
1608788 TTTTAGAAAT
* *
1608798 AAACGCTGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
1608841 AAACGCTGCTATAGATCAAGACCTTTAGCGGCGCTTCT-ACAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* ** * *
1608883 AAACGCCGCTATAGCTCGGGATCTTTAGCGGCGCTTTCCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
1608926 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
1608969 AAACGTCACTATAGATCAAGACCTTAAGCGGCGCTTTTCTCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
*
1609012 AAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT
1609049 GATTACAAAC
Statistics
Matches: 183, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 34 0.19
43 149 0.81
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:1611652 original size:46 final size:46
Alignment explanation
Indices: 1611592--1611689 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
1611582 AATCATAGTT
* *
1611592 TTTTTAAGTCATATTTATAAAAATTAGATAAAATTAAAAATTTTAG
1 TTTTTAAGTAATATTTATAAAAACTAGATAAAATTAAAAATTTTAG
*
1611638 TTTTTAAGTAATATTTATAAAAACTAGATAAAATTAAAATTTTTAG
1 TTTTTAAGTAATATTTATAAAAACTAGATAAAATTAAAAATTTTAG
1611684 TGTTTT
1 T-TTTT
1611690 TATTTCTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 44 0.92
47 4 0.08
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (46 bp):
TTTTTAAGTAATATTTATAAAAACTAGATAAAATTAAAAATTTTAG
Found at i:1612257 original size:50 final size:50
Alignment explanation
Indices: 1612153--1612341 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 50
1612143 GAATGAGATA
* * **
1612153 CCATCTAAGACCATGTCAGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGGTC
*
1612209 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
** * * **
1612259 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * *
1612309 CCATGTAAGACCATATTTGGGATATGGCATTGG
1 CCATGTAAGACCATGTCTGGGACATGGCATTGG
1612342 TAGTACAGGA
Statistics
Matches: 115, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 80 0.70
52 1 0.01
53 3 0.03
56 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTC
Found at i:1619922 original size:50 final size:50
Alignment explanation
Indices: 1619861--1620046 Score: 200
Period size: 50 Copynumber: 3.7 Consensus size: 50
1619851 GGGAATGAGA
**
1619861 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* *
1619911 TCCCCA-GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 T-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
* * * * * *
1619961 TCCCATGTAAGACCATATCTAGGATATGGCATTGGTA--GTATAGGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAAC
* * *
1620009 ATCTCATGTAAGGCCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
1620047 TGTTATTATC
Statistics
Matches: 115, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
48 4 0.03
49 39 0.34
50 68 0.59
51 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAC
Found at i:1620274 original size:20 final size:20
Alignment explanation
Indices: 1620249--1620287 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
1620239 TGAGTTATTT
1620249 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
1620269 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
1620288 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:1622211 original size:27 final size:27
Alignment explanation
Indices: 1622169--1622237 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
1622159 CCATACGCAC
* * * **
1622169 TATTCCTTTAAAGTTCTCCATATGTAA
1 TATTCCTTCAATGTTCGCCATACATAA
* *
1622196 TATTCCTTCAGTGTTCGCCATACATAC
1 TATTCCTTCAATGTTCGCCATACATAA
1622223 TATTCCTTCAATGTT
1 TATTCCTTCAATGTT
1622238 TACCATACCT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (27 bp):
TATTCCTTCAATGTTCGCCATACATAA
Found at i:1622415 original size:26 final size:25
Alignment explanation
Indices: 1622344--1622418 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 25
1622334 GTTCCAGGGT
*
1622344 TTGCCACAAAAGCATTTCCTTTAGATG
1 TTGCCAC-AAGGCA-TTCCTTTAGATG
*
1622371 TTTGCCACAAGGCCCTTCCTTTAGAATG
1 -TTGCCACAAGG-CATTCCTTTAG-ATG
1622399 -TGCCACGAAGGCATTCCTTT
1 TTGCCAC-AAGGCATTCCTTT
1622419 CCATAGATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
26 14 0.34
27 16 0.39
28 11 0.27
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (25 bp):
TTGCCACAAGGCATTCCTTTAGATG
Found at i:1622450 original size:27 final size:27
Alignment explanation
Indices: 1622399--1622581 Score: 167
Period size: 27 Copynumber: 6.7 Consensus size: 27
1622389 CTTTAGAATG
*
1622399 TGCCACGAAGGCATTCC-TTTCCATAGAT
1 TGCCACAAAGGC-TTCCATTT-CATAGAT
* *
1622427 TGCCTCAAAGACTTCCATTTCATAGAT
1 TGCCACAAAGGCTTCCATTTCATAGAT
* *
1622454 T-CTCACAAAGGCTTCTATTTTATAGAT
1 TGC-CACAAAGGCTTCCATTTCATAGAT
* * *
1622481 ATGTCACGAAGGCTTCTATTTCATAGAT
1 -TGCCACAAAGGCTTCCATTTCATAGAT
* *
1622509 TGCCATAAAGGCTTCCATTTTATAGA-
1 TGCCACAAAGGCTTCCATTTCATAGAT
* *
1622535 T-ACATCATGAAAGCTTCCATTTCATAGAT
1 TGCCA-CA--AAGGCTTCCATTTCATAGAT
1622564 TGCCACAAAGGCTTCCAT
1 TGCCACAAAGGCTTCCAT
1622582 ATTCTGGCGT
Statistics
Matches: 125, Mismatches: 21, Indels: 19
0.76 0.13 0.12
Matches are distributed among these distances:
25 2 0.02
26 3 0.02
27 63 0.50
28 52 0.42
29 3 0.02
30 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (27 bp):
TGCCACAAAGGCTTCCATTTCATAGAT
Found at i:1622503 original size:55 final size:55
Alignment explanation
Indices: 1622433--1622581 Score: 210
Period size: 55 Copynumber: 2.7 Consensus size: 55
1622423 AGATTGCCTC
* **
1622433 AAAGACTTCCATTTCATAGATT-CTCACAAAGGCTTCTATTTTATAGATATGTCACG
1 AAAG-CTTCCATTTCATAGATTGC-CACAAAGGCTTCCATTTTATAGATACATCACG
* * * *
1622489 AAGGCTTCTATTTCATAGATTGCCATAAAGGCTTCCATTTTATAGATACATCATG
1 AAAGCTTCCATTTCATAGATTGCCACAAAGGCTTCCATTTTATAGATACATCACG
1622544 AAAGCTTCCATTTCATAGATTGCCACAAAGGCTTCCAT
1 AAAGCTTCCATTTCATAGATTGCCACAAAGGCTTCCAT
1622582 ATTCTGGCGT
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
55 78 0.95
56 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (55 bp):
AAAGCTTCCATTTCATAGATTGCCACAAAGGCTTCCATTTTATAGATACATCACG
Found at i:1624202 original size:25 final size:25
Alignment explanation
Indices: 1624172--1624265 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
1624162 ATTATGACCC
1624172 ACAGCTCGTGTAAGCATATCGATTT
1 ACAGCTCGTGTAAGCATATCGATTT
* * *
1624197 ATAGCTTGTG-AGAGCATA-CTGATCT
1 ACAGCTCGTGTA-AGCATATC-GATTT
* * * *
1624222 ACAGCTCGAGTGAGCATACCGATTC
1 ACAGCTCGTGTAAGCATATCGATTT
* *
1624247 ACAGCTCGTATGAGCATAT
1 ACAGCTCGTGTAAGCATAT
1624266 ATGTAAATGA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
24 2 0.04
25 50 0.94
26 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (25 bp):
ACAGCTCGTGTAAGCATATCGATTT
Found at i:1629051 original size:85 final size:86
Alignment explanation
Indices: 1628953--1629109 Score: 262
Period size: 85 Copynumber: 1.8 Consensus size: 86
1628943 TTTTAGAAAT
* *
1628953 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGC-TTTTACACAAACGCCGCCATAGATCAGGAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACACAAACGCCGCCATAGATCAAGAC
1629017 CTTTAGCGGCACTTTTCCCAC
66 CTTTAGCGGCACTTTTCCCAC
* * *
1629038 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCATAAACGCCGCTATAGATCAAGAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACACAAACGCCGCCATAGATCAAGAC
1629103 CTTTAGC
66 CTTTAGC
1629110 AATGCTTTAA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
85 33 0.50
86 33 0.50
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (86 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACACAAACGCCGCCATAGATCAAGAC
CTTTAGCGGCACTTTTCCCAC
Found at i:1629117 original size:43 final size:43
Alignment explanation
Indices: 1628953--1629109 Score: 244
Period size: 43 Copynumber: 3.7 Consensus size: 43
1628943 TTTTAGAAAT
* *
1628953 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGC-TTTTACAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
* * * *
1628995 AAACGCCGCCATAGATCAGGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
*
1629038 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
1629081 AAACGCCGCTATAGATCAAGACCTTTAGC
1 AAACGCCGCTATAGATCAAGACCTTTAGC
1629110 AATGCTTTAA
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 32 0.30
43 73 0.70
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCAC
Found at i:1629128 original size:43 final size:43
Alignment explanation
Indices: 1628953--1629134 Score: 233
Period size: 43 Copynumber: 4.3 Consensus size: 43
1628943 TTTTAGAAAT
*
1628953 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTA-CAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTATCAC
* * * **
1628995 AAACGCCGCCATAGATCAGGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTATCAC
*
1629038 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-TCCAT
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTAT-CAC
*** * *
1629081 AAACGCCGCTATAGATCAAGACCTTTAGCAATGCTTTAATTAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTATCAC
1629124 AAACGCCGCTA
1 AAACGCCGCTA
1629135 AAAATACCGT
Statistics
Matches: 123, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
42 36 0.29
43 86 0.70
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTATCAC
Found at i:1631230 original size:36 final size:38
Alignment explanation
Indices: 1631190--1631263 Score: 98
Period size: 41 Copynumber: 1.9 Consensus size: 38
1631180 ACATCTATTT
1631190 AATATG-T-CGAATTTAATGCTGCCACTACATGTTATA
1 AATATGCTGCGAATTTAATGCTGCCACTACATGTTATA
*
1631226 AATATGCCTGGACGAATTTAATGCTGCTACTACATGTT
1 AATATG-CT-G-CGAATTTAATGCTGCCACTACATGTT
1631264 TGGCCGAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 6 0.19
38 1 0.03
41 25 0.78
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (38 bp):
AATATGCTGCGAATTTAATGCTGCCACTACATGTTATA
Found at i:1632656 original size:23 final size:23
Alignment explanation
Indices: 1632624--1632735 Score: 125
Period size: 23 Copynumber: 4.9 Consensus size: 23
1632614 TTTTTTGAAC
* *
1632624 CATTAACATTTCGTACCAAATCG
1 CATTACCATTTCGTACCAAATCA
* *
1632647 TATTACCATTTCGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
* * *
1632670 CCTTACCAATTCGTACCAAATCG
1 CATTACCATTTCGTACCAAATCA
* * *
1632693 TATTACCATTTTGAACCAAATCA
1 CATTACCATTTCGTACCAAATCA
*
1632716 CATTACCATTTCGTAACAAA
1 CATTACCATTTCGTACCAAA
1632736 CCCAAAACCG
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (23 bp):
CATTACCATTTCGTACCAAATCA
Found at i:1632700 original size:46 final size:46
Alignment explanation
Indices: 1632624--1632735 Score: 170
Period size: 46 Copynumber: 2.4 Consensus size: 46
1632614 TTTTTTGAAC
* *
1632624 CATTAACATTTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
1 CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
* *
1632670 CCTTACCAATTCGTACCAAATCGTATTACCATTTTGAACCAAATCA
1 CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
* *
1632716 CATTACCATTTCGTAACAAA
1 CATTACCAATTCGTACCAAA
1632736 CCCAAAACCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (46 bp):
CATTACCAATTCGTACCAAATCGTATTACCATTTCGAACCAAATCA
Found at i:1634545 original size:32 final size:35
Alignment explanation
Indices: 1634485--1634551 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
1634475 AGAAAAAAAC
**
1634485 GCATTTTTGTCAACCAAAAAGATGCATAAT-TGAAA
1 GCATTTTTGTCAA-CAAAAAGACCCATAATATGAAA
1634520 GCATTTTTGTCAA-AAAAA-ACCCATAATATGAA
1 GCATTTTTGTCAACAAAAAGACCCATAATATGAA
1634552 TAGAGTTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 7 0.24
33 9 0.31
35 13 0.45
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (35 bp):
GCATTTTTGTCAACAAAAAGACCCATAATATGAAA
Found at i:1637199 original size:14 final size:15
Alignment explanation
Indices: 1637163--1637204 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
1637153 TACTAAACAT
1637163 TAAA-CCTTAAACTA
1 TAAACCCTTAAACTA
1637177 TAAAACCCTTAAACTA
1 T-AAACCCTTAAACTA
*
1637193 T-AGCCCTTAAAC
1 TAAACCCTTAAAC
1637205 CTCTTAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 11 0.44
15 3 0.12
16 11 0.44
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.26
Consensus pattern (15 bp):
TAAACCCTTAAACTA
Found at i:1637507 original size:7 final size:7
Alignment explanation
Indices: 1637495--1637572 Score: 52
Period size: 7 Copynumber: 11.0 Consensus size: 7
1637485 CTAGTTAATT
1637495 TAAACCC
1 TAAACCC
*
1637502 TAAACCA
1 TAAACCC
*
1637509 TAAA-TC
1 TAAACCC
1637515 TAAACCC
1 TAAACCC
* *
1637522 TAAGCCT
1 TAAACCC
1637529 TAAAACCC
1 T-AAACCC
1637537 TAAACCC
1 TAAACCC
* *
1637544 TTAACAC
1 TAAACCC
1637551 -ATAACCTC
1 TA-AACC-C
*
1637559 TAAACCT
1 TAAACCC
1637566 TAAACCC
1 TAAACCC
1637573 CAGCCTTTAA
Statistics
Matches: 52, Mismatches: 14, Indels: 10
0.68 0.18 0.13
Matches are distributed among these distances:
6 4 0.08
7 37 0.71
8 10 0.19
9 1 0.02
ACGTcount: A:0.44, C:0.35, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:1637933 original size:41 final size:41
Alignment explanation
Indices: 1637865--1637991 Score: 155
Period size: 41 Copynumber: 3.1 Consensus size: 41
1637855 TAAATTATTT
* * *
1637865 TAAATCCCTGAGCATTAGCGGCACTTTCTCAAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
1637906 TAAAGCCCTAAGCATTAGCGGTGCTTTCTTAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * * *
1637947 TAAAGCCCCGGGCCTTAGCGGCGCTTCCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1637988 TAAA
1 TAAA
1637992 TCCCCGAAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:1641219 original size:74 final size:76
Alignment explanation
Indices: 1641056--1641230 Score: 194
Period size: 74 Copynumber: 2.3 Consensus size: 76
1641046 ATTTGTCAGT
* * * * ** * *
1641056 TTTATCCGACTAGTGCTGGGCACACATTTGATATCGTCGGTTATCCTTACTAGCGCTGGGCGTAC
1 TTTATTCGACTAGTGCTGGGAACACATTTGATATCGTCGATTAACCAAACTAGCGCTGGGCGCAA
*
1641121 CTCATTGTCGG
66 ATCATTGTCGG
* *
1641132 TTTATTCGACTAGTGTTGGGAACACATTTGATATCGTC-ATTAACCAAACTAG-GTTGGGCGCAA
1 TTTATTCGACTAGTGCTGGGAACACATTTGATATCGTCGATTAACCAAACTAGCGCTGGGCGCAA
*
1641195 ATCATTGTTGG
66 ATCATTGTCGG
* *
1641206 TTTAATT-GACTAGTGCAGGGCACAC
1 TTT-ATTCGACTAGTGCTGGGAACAC
1641231 CTATCATCGA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
74 35 0.42
75 13 0.16
76 35 0.42
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (76 bp):
TTTATTCGACTAGTGCTGGGAACACATTTGATATCGTCGATTAACCAAACTAGCGCTGGGCGCAA
ATCATTGTCGG
Found at i:1656754 original size:45 final size:45
Alignment explanation
Indices: 1656690--1656783 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
1656680 AACAGATACT
* * *
1656690 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
*
1656735 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
1656780 CGGT
1 CGGT
1656784 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:1656865 original size:51 final size:50
Alignment explanation
Indices: 1656789--1656975 Score: 218
Period size: 51 Copynumber: 3.7 Consensus size: 50
1656779 TCGGTTCACA
* * **
1656789 TAGTAGCCCGCACGTAGTACTACACATATGACCATTACCATCC-GATACACG
1 TAGTAGCCAGCACATAGTACTACACACGTGACCA-TACCATCCAG-TACACG
* * *
1656840 TAGTAGCCAGCACATAGTACTACACACGTGACCGAAACTATCCAGTAAACG
1 TAGTAGCCAGCACATAGTACTACACACGTGACC-ATACCATCCAGTACACG
* * *
1656891 TAGTAGCCAGCACATAGTACTACACATGCGACC-TATCATTCCAGTACACG
1 TAGTAGCCAGCACATAGTACTACACACGTGACCATACCA-TCCAGTACACG
1656941 TAGTAGCCTA-CACATAGTACTACACACGTGACCAT
1 TAGTAGCC-AGCACATAGTACTACACACGTGACCAT
1656976 CACTTTCACT
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 73 0.63
52 2 0.02
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (50 bp):
TAGTAGCCAGCACATAGTACTACACACGTGACCATACCATCCAGTACACG
Found at i:1656955 original size:50 final size:51
Alignment explanation
Indices: 1656834--1656973 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 51
1656824 TACCATCCGA
*
1656834 TACACGTAGTAGCCAGCACATAGTACTACACACGTGACCGAAACTATCCAG
1 TACACGTAGTAGCCAGCACATAGTACTACACACGCGACCGAAACTATCCAG
* * * *
1656885 TAAACGTAGTAGCCAGCACATAGTACTACACATGCGACC-TATC-ATTCCAG
1 TACACGTAGTAGCCAGCACATAGTACTACACACGCGACCGAAACTA-TCCAG
*
1656935 TACACGTAGTAGCCTA-CACATAGTACTACACACGTGACC
1 TACACGTAGTAGCC-AGCACATAGTACTACACACGCGACC
1656974 ATCACTTTCA
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 41 0.52
51 37 0.47
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.20
Consensus pattern (51 bp):
TACACGTAGTAGCCAGCACATAGTACTACACACGCGACCGAAACTATCCAG
Found at i:1656957 original size:101 final size:101
Alignment explanation
Indices: 1656789--1656973 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
1656779 TCGGTTCACA
* * *
1656789 TAGTAGCCCGCACGTAGTACTACACATATGACCATTACCATCCGATACACGTAGTAGCCAGCACA
1 TAGTAGCCAGCACATAGTACTACACATACGACCA-TACCATCCGATACACGTAGTAGCCAGCACA
1656854 TAGTACTACACACGTGACCGAAACTATCCAGTAAACG
65 TAGTACTACACACGTGACCGAAACTATCCAGTAAACG
* *
1656891 TAGTAGCCAGCACATAGTACTACACATGCGACC-TATCATTCC-AGTACACGTAGTAGCCTA-CA
1 TAGTAGCCAGCACATAGTACTACACATACGACCATACCA-TCCGA-TACACGTAGTAGCC-AGCA
1656953 CATAGTACTACACACGTGACC
63 CATAGTACTACACACGTGACC
1656974 ATCACTTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
100 5 0.07
101 40 0.53
102 30 0.40
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.21
Consensus pattern (101 bp):
TAGTAGCCAGCACATAGTACTACACATACGACCATACCATCCGATACACGTAGTAGCCAGCACAT
AGTACTACACACGTGACCGAAACTATCCAGTAAACG
Found at i:1664325 original size:16 final size:16
Alignment explanation
Indices: 1664304--1664335 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1664294 ATTTTGTTGC
*
1664304 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
1664320 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
1664336 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:1664399 original size:25 final size:28
Alignment explanation
Indices: 1664341--1664399 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 28
1664331 TTTCACTTTC
*
1664341 AATCATTATTCAATTCAATTCCACACAT
1 AATCATTAATCAATTCAATTCCACACAT
*
1664369 -AT-ATTAATC-ATTCAA-T-CACACTT
1 AATCATTAATCAATTCAATTCCACACAT
1664392 AATCATTA
1 AATCATTA
1664400 CATGATGTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
23 6 0.22
24 3 0.11
25 10 0.37
26 6 0.22
27 2 0.07
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (28 bp):
AATCATTAATCAATTCAATTCCACACAT
Found at i:1664678 original size:50 final size:50
Alignment explanation
Indices: 1664559--1664700 Score: 180
Period size: 50 Copynumber: 2.8 Consensus size: 50
1664549 GGTACCGGTT
* * *
1664559 CACATAGTAGCCTGCACATAGTACTACACACATGATCA-AAGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCA--TATCTGGTA
* *
1664610 CGCATAGTAGCCTGCACATAGTACTACACATGTGACCTATCAT-TCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCATATCTGGTA
* *
1664660 CACGTAGTAGCCTACACATAGTACTACACACGTGACCATCA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCA
1664701 CTTTCACTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
49 4 0.05
50 40 0.50
51 34 0.43
52 1 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCATATCTGGTA
Found at i:1667697 original size:42 final size:42
Alignment explanation
Indices: 1667617--1667698 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
1667607 CAATTTCTCT
* **
1667617 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
1667659 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
1667699 CACACCGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:1668129 original size:8 final size:8
Alignment explanation
Indices: 1668113--1668155 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
1668103 TAAACTTTCA
*
1668113 TTTCATTT
1 TTTCTTTT
1668121 TTTC-TTT
1 TTTCTTTT
1668128 TTTCTTTT
1 TTTCTTTT
*
1668136 TTCTTTTTT
1 TT-TCTTTT
1668145 TTTCTTTT
1 TTTCTTTT
1668153 TTT
1 TTT
1668156 TTCTACTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 7 0.23
8 17 0.55
9 7 0.23
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTCTTTT
Found at i:1668130 original size:7 final size:7
Alignment explanation
Indices: 1668113--1668159 Score: 62
Period size: 7 Copynumber: 6.7 Consensus size: 7
1668103 TAAACTTTCA
1668113 TTTCATTT
1 TTTC-TTT
1668121 TTTCTTT
1 TTTCTTT
1668128 TTTCTTT
1 TTTCTTT
1668135 TTTCTTT
1 TTTCTTT
1668142 TTT-TTT
1 TTTCTTT
1668148 CTTT-TTT
1 -TTTCTTT
1668155 TTTCT
1 TTTCT
1668160 ACTTATGATC
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.16
7 27 0.73
8 4 0.11
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTCTTT
Found at i:1668147 original size:10 final size:10
Alignment explanation
Indices: 1668113--1668159 Score: 60
Period size: 10 Copynumber: 4.5 Consensus size: 10
1668103 TAAACTTTCA
1668113 TTTCATTTTTT
1 TTTC-TTTTTT
1668124 CTTT-TTTCTTT
1 -TTTCTTT-TTT
1668135 TTTCTTTTTT
1 TTTCTTTTTT
1668145 TTTCTTTTTT
1 TTTCTTTTTT
1668155 TTTCT
1 TTTCT
1668160 ACTTATGATC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 24 0.73
11 6 0.18
12 3 0.09
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:1670392 original size:45 final size:45
Alignment explanation
Indices: 1670323--1670416 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
1670313 AATAGATACT
* * *
1670323 CGGTGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTC
*
1670368 CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTC
1670413 CGGT
1 CGGT
1670417 TCACATAGCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGAAACCACCTTACTAATCAATGATGTC
Found at i:1675808 original size:25 final size:25
Alignment explanation
Indices: 1675778--1675831 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
1675768 AAGAAAAAAA
1675778 AGTATGGATCTTGGTTGACCTACCT
1 AGTATGGATCTTGGTTGACCTACCT
1675803 AGTATGGATCTTGGTTGACCTACCT
1 AGTATGGATCTTGGTTGACCTACCT
1675828 AGTA
1 AGTA
1675832 GGGTTAAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (25 bp):
AGTATGGATCTTGGTTGACCTACCT
Found at i:1678112 original size:40 final size:40
Alignment explanation
Indices: 1678057--1678282 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
1678047 TACCTTATAA
** *
1678057 TTATTCAGGCTTAGTGCCTATTAGGTTTCGTGCCGGTGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
* *
1678097 TTATTCAGGCTTAGTGCTTAGCAGGCTTCATGCCGGTGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
* * **
1678137 TTATTCAGGCTTAGTGCCTAGCAGGCTTCATGTCATTGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
**
1678177 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCTAGTGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
* ** *
1678217 TTATTCAGGTTTAGCACCTAGCAGGCTTCGTGTCGGTG-G
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
* *
1678256 -TATTTAGGCTTAGTGCCTAGCAAGCTT
1 TTATTCAGGCTTAGTGCCTAGCAGGCTT
1678283 TATGCTAGTG
Statistics
Matches: 162, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
38 22 0.14
39 1 0.01
40 139 0.86
ACGTcount: A:0.16, C:0.19, G:0.28, T:0.36
Consensus pattern (40 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTG
Found at i:1678303 original size:36 final size:36
Alignment explanation
Indices: 1678261--1678333 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
1678251 GGTGGTATTT
*
1678261 AGGCTTAGTGCCTAGCAAGCTTTATGCTAGTGAATC
1 AGGCTTAATGCCTAGCAAGCTTTATGCTAGTGAATC
* * * * *
1678297 AGGCTTAATGCTTAGCAGGCTTTGTGCTGGTGTATC
1 AGGCTTAATGCCTAGCAAGCTTTATGCTAGTGAATC
1678333 A
1 A
1678334 AGTTGTCTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (36 bp):
AGGCTTAATGCCTAGCAAGCTTTATGCTAGTGAATC
Found at i:1679488 original size:64 final size:64
Alignment explanation
Indices: 1679387--1679514 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
1679377 AATTTCATAA
1679387 GTATGTATGTGCATTAACACATTTGCTTATTAAAATTTGTTTAATCGATTGAATTGACATAGAG
1 GTATGTATGTGCATTAACACATTTGCTTATTAAAATTTGTTTAATCGATTGAATTGACATAGAG
*
1679451 GTATGTATGTGCATTAACACATTTGCTTATTAAAATTTGTTTAATTGATTGAATTGACATAGAG
1 GTATGTATGTGCATTAACACATTTGCTTATTAAAATTTGTTTAATCGATTGAATTGACATAGAG
1679515 ATATAGTCAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (64 bp):
GTATGTATGTGCATTAACACATTTGCTTATTAAAATTTGTTTAATCGATTGAATTGACATAGAG
Found at i:1683982 original size:26 final size:26
Alignment explanation
Indices: 1683946--1684016 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
1683936 TAACTATACT
1683946 AAAATACCCTCGATGGGTAAATTATC
1 AAAATACCCTCGATGGGTAAATTATC
* *
1683972 AAAATACCCTCGATAGGAAAATTATC
1 AAAATACCCTCGATGGGTAAATTATC
* * *
1683998 GAAATACCCCCGAAGGGTA
1 AAAATACCCTCGATGGGTA
1684017 GAATGACCGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (26 bp):
AAAATACCCTCGATGGGTAAATTATC
Found at i:1688576 original size:21 final size:20
Alignment explanation
Indices: 1688539--1688585 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
1688529 AATAATAATG
*
1688539 CATTGAGACTAATGTGTAGTT
1 CATTGAGACTAAAGTGTAG-T
*
1688560 CATTGATGAC-AAAGTGTTGT
1 CATTGA-GACTAAAGTGTAGT
1688580 CATTGA
1 CATTGA
1688586 CATAGGGATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 13 0.57
22 3 0.13
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (20 bp):
CATTGAGACTAAAGTGTAGT
Found at i:1694315 original size:20 final size:20
Alignment explanation
Indices: 1694290--1694327 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1694280 ATGGAGGTAA
*
1694290 TAAAATATGTATAATAAATT
1 TAAAATATATATAATAAATT
1694310 TAAAATATATATAATAAA
1 TAAAATATATATAATAAA
1694328 GCAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
TAAAATATATATAATAAATT
Found at i:1694640 original size:60 final size:60
Alignment explanation
Indices: 1694576--1694755 Score: 142
Period size: 60 Copynumber: 3.0 Consensus size: 60
1694566 ATTTTTAATA
1694576 AAATATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
1 AAATATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
* * * ** ** **
1694636 AAATATAGATTAAATTTGATAGAGGGAA-TAAA--ATTAA-AATGTACAAA----ATAATTTTTA
1 AAATATAGGTTAAA-TAG-TA-A---AATTAAAGTTTTAACAA--CCCAAATGTTATAGGTTCAA
*
1694693 ATA
58 ATC
1694696 AAATATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
1 AAATATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
1694756 CCATATGTAA
Statistics
Matches: 84, Mismatches: 20, Indels: 32
0.62 0.15 0.24
Matches are distributed among these distances:
54 2 0.02
55 4 0.05
56 4 0.05
57 5 0.06
58 4 0.05
59 2 0.02
60 42 0.50
61 2 0.02
62 4 0.05
63 5 0.06
64 4 0.05
65 4 0.05
66 2 0.02
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (60 bp):
AAATATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
Found at i:1694662 original size:120 final size:121
Alignment explanation
Indices: 1694515--1694755 Score: 475
Period size: 120 Copynumber: 2.0 Consensus size: 121
1694505 AGTATAGATT
1694515 AAATATAGATTTAAATTTGATAGAGGGAATAAAATTAAAATGTACAAAATAATTTTTAATAAAAT
1 AAATATAGATTTAAATTTGATAGAGGGAATAAAATTAAAATGTACAAAATAATTTTTAATAAAAT
1694580 ATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
66 ATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
1694636 AAATATAGA-TTAAATTTGATAGAGGGAATAAAATTAAAATGTACAAAATAATTTTTAATAAAAT
1 AAATATAGATTTAAATTTGATAGAGGGAATAAAATTAAAATGTACAAAATAATTTTTAATAAAAT
1694700 ATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
66 ATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
1694756 CCATATGTAA
Statistics
Matches: 120, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
120 111 0.93
121 9 0.08
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.33
Consensus pattern (121 bp):
AAATATAGATTTAAATTTGATAGAGGGAATAAAATTAAAATGTACAAAATAATTTTTAATAAAAT
ATAGGTTAAATAGTAAAATTAAAGTTTTAACAACCCAAATGTTATAGGTTCAAATC
Found at i:1697194 original size:26 final size:29
Alignment explanation
Indices: 1697165--1697217 Score: 67
Period size: 26 Copynumber: 1.9 Consensus size: 29
1697155 TCATACTGAT
1697165 AATGATTCCCTTG-A-CAAAG-ATTCAAA
1 AATGATTCCCTTGTATCAAAGAATTCAAA
* *
1697191 AATGCTTGCCTTGTATCAAAGAATTCA
1 AATGATTCCCTTGTATCAAAGAATTCA
1697218 CTCTCAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 11 0.50
27 1 0.05
28 5 0.23
29 5 0.23
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (29 bp):
AATGATTCCCTTGTATCAAAGAATTCAAA
Found at i:1699386 original size:9 final size:9
Alignment explanation
Indices: 1699356--1699385 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1699346 GGGTGTTGTG
1699356 TTTTCTTTT
1 TTTTCTTTT
1699365 TTTTCTTTT
1 TTTTCTTTT
1699374 TTTT-TTTT
1 TTTTCTTTT
1699382 TTTT
1 TTTT
1699386 TGTGTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:1699523 original size:1 final size:1
Alignment explanation
Indices: 1699479--1699510 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
1699469 AGGTTGTGTG
1699479 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1699511 GTGTATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:1699560 original size:124 final size:124
Alignment explanation
Indices: 1699340--1699588 Score: 455
Period size: 124 Copynumber: 2.0 Consensus size: 124
1699330 ATTTTTGTTT
1699340 TTCTTAGGGTGTTGTGTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTGTGTATAATTTTTAGCAA
1 TTCTTAGGGTGTTGTGTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTGTGTATAATTTTTAGCAA
1699405 TTCTGAAAGTCTTTCAGCAACCTCAAAGTAGCACAAAGATTACCATATAGAACATAGAA
66 TTCTGAAAGTCTTTCAGCAACCTCAAAGTAGCACAAAGATTACCATATAGAACATAGAA
* * *
1699464 TTCTTAGGTTG-TGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTATAATTTTTAGCA
1 TTCTTAGGGTGTTGTG-TTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTGTGTATAATTTTTAGCA
1699528 ATTCTGAAAGTCTTTCAGCAACCTCAAAGTAGCACAAAGATTACCATATAGAACATAGAA
65 ATTCTGAAAGTCTTTCAGCAACCTCAAAGTAGCACAAAGATTACCATATAGAACATAGAA
1699588 T
1 T
1699589 CGACTGACAT
Statistics
Matches: 121, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
123 4 0.03
124 117 0.97
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (124 bp):
TTCTTAGGGTGTTGTGTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTGTGTATAATTTTTAGCAA
TTCTGAAAGTCTTTCAGCAACCTCAAAGTAGCACAAAGATTACCATATAGAACATAGAA
Found at i:1706502 original size:41 final size:41
Alignment explanation
Indices: 1706439--1706535 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 41
1706429 TGGCGCTAAT
* * * ** *
1706439 AGAAAAACGCCGCAATAAGTAAAGCCATAGCGGTGTTTTTG
1 AGAAAAACGCCACAACAAGTAAAGCAATAGCGGCATTTATG
* *
1706480 AGAAAAACGCCACAGCAGGTAAAGCAATAGCGGCATTTATG
1 AGAAAAACGCCACAACAAGTAAAGCAATAGCGGCATTTATG
*
1706521 GGAAAAACGCCACAA
1 AGAAAAACGCCACAA
1706536 TTTTTTTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (41 bp):
AGAAAAACGCCACAACAAGTAAAGCAATAGCGGCATTTATG
Found at i:1706722 original size:48 final size:48
Alignment explanation
Indices: 1706608--1706732 Score: 178
Period size: 48 Copynumber: 2.6 Consensus size: 48
1706598 ACACGAATTA
* * *
1706608 TTTTCTTTCTCAGTCTTTTGTTTGCTTGAAACCCCAAAATCCGGTCCC
1 TTTTCTTTCTCAGTCTTTTCTTTGCTTGAAACCCCAAAATCCCGCCCC
** *
1706656 TTTTCTTTCTCAAACTTTTCTTTACTTGAAACCCCAAAATCCCGCCCC
1 TTTTCTTTCTCAGTCTTTTCTTTGCTTGAAACCCCAAAATCCCGCCCC
* *
1706704 TTTTATTTCTCAGTCTTTTCGTTGCTTGA
1 TTTTCTTTCTCAGTCTTTTCTTTGCTTGA
1706733 GAAAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.18, C:0.29, G:0.10, T:0.44
Consensus pattern (48 bp):
TTTTCTTTCTCAGTCTTTTCTTTGCTTGAAACCCCAAAATCCCGCCCC
Found at i:1708148 original size:21 final size:21
Alignment explanation
Indices: 1708122--1708162 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1708112 AATATATTTG
* *
1708122 AATTTTTAAAGCATTTTTTTT
1 AATTTTTAAAGAATTGTTTTT
1708143 AATTTTTAAAGAATTGTTTT
1 AATTTTTAAAGAATTGTTTT
1708163 ACGATCAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (21 bp):
AATTTTTAAAGAATTGTTTTT
Found at i:1710827 original size:13 final size:13
Alignment explanation
Indices: 1710811--1710837 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1710801 TAATTAAAGG
1710811 GTTAAAATTTAAA
1 GTTAAAATTTAAA
1710824 GTTAAAATTTAAA
1 GTTAAAATTTAAA
1710837 G
1 G
1710838 ATGATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:1710880 original size:32 final size:35
Alignment explanation
Indices: 1710826--1710905 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
1710816 AATTTAAAGT
1710826 TAAA-ATTTAAAGATGATAA-T-T-ATAACTTACA
1 TAAACATTTAAAGATGATAATTATCATAACTTACA
* * *
1710857 TAAACATTTAAAGTTTATGATTATCATAACTTACA
1 TAAACATTTAAAGATGATAATTATCATAACTTACA
1710892 TAAACATTTAAAGA
1 TAAACATTTAAAGA
1710906 ATAAAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 4 0.10
32 12 0.29
33 1 0.02
34 1 0.02
35 23 0.56
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (35 bp):
TAAACATTTAAAGATGATAATTATCATAACTTACA
Found at i:1710886 original size:35 final size:35
Alignment explanation
Indices: 1710838--1710904 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
1710828 AAATTTAAAG
*
1710838 ATGATAATTATAACTTACATAAACATTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
*
1710873 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
1710905 AATAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:1710939 original size:9 final size:9
Alignment explanation
Indices: 1710925--1710959 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
1710915 AACTTTAGAT
1710925 CATAACTTA
1 CATAACTTA
1710934 CATAACTTA
1 CATAACTTA
1710943 CATAACTTA
1 CATAACTTA
1710952 CATAACTT
1 CATAACTT
1710960 CGTATAGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:1713349 original size:26 final size:26
Alignment explanation
Indices: 1713301--1713365 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
1713291 GTTTATGTAT
1713301 GCTCATACGAGCT--ATAAACGGTAA
1 GCTCATACGAGCTGAATAAACGGTAA
* *
1713325 GCTCCTTCGAGCTGAATAAACGGTAA
1 GCTCATACGAGCTGAATAAACGGTAA
1713351 GCTCATACGAGCTGA
1 GCTCATACGAGCTGA
1713366 GTATCAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 11 0.31
26 24 0.69
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (26 bp):
GCTCATACGAGCTGAATAAACGGTAA
Found at i:1715160 original size:26 final size:26
Alignment explanation
Indices: 1715112--1715176 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
1715102 GTTTATGTAT
1715112 GCTCATACGAGCT--ATAAACGGTAA
1 GCTCATACGAGCTGAATAAACGGTAA
* *
1715136 GCTCCTTCGAGCTGAATAAACGGTAA
1 GCTCATACGAGCTGAATAAACGGTAA
1715162 GCTCATACGAGCTGA
1 GCTCATACGAGCTGA
1715177 GTATCAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 11 0.31
26 24 0.69
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (26 bp):
GCTCATACGAGCTGAATAAACGGTAA
Found at i:1723961 original size:26 final size:26
Alignment explanation
Indices: 1723932--1723991 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
1723922 CTTGGGACAA
*
1723932 CGAATGGAATTACATAACAGGTTGGT
1 CGAATGGAATTACATAACAGGTTAGT
1723958 CGAATGGAATTACATAACAGGTTAGT
1 CGAATGGAATTACATAACAGGTTAGT
1723984 CGAATGGA
1 CGAATGGA
1723992 GCCACGACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (26 bp):
CGAATGGAATTACATAACAGGTTAGT
Found at i:1737470 original size:27 final size:27
Alignment explanation
Indices: 1737439--1737500 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
1737429 GAGCATCTTT
*
1737439 TTTCCTTTATTCTATTGTTTATATCTC
1 TTTCCTTTATTCTATTCTTTATATCTC
1737466 TTTCCTTTATTCTATTCTTTATATCTC
1 TTTCCTTTATTCTATTCTTTATATCTC
1737493 TTT-CTTTA
1 TTTCCTTTA
1737501 ACATTGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.15, C:0.19, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTCCTTTATTCTATTCTTTATATCTC
Found at i:1737499 original size:14 final size:14
Alignment explanation
Indices: 1737456--1737500 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
1737446 TATTCTATTG
1737456 TTTATATCTCTTTCC
1 TTTATATCTCTTT-C
*
1737471 TTTAT-TCT-ATTC
1 TTTATATCTCTTTC
1737483 TTTATATCTCTTTC
1 TTTATATCTCTTTC
1737497 TTTA
1 TTTA
1737501 ACATTGCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 6 0.23
13 5 0.19
14 10 0.38
15 5 0.19
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTATATCTCTTTC
Found at i:1739747 original size:27 final size:27
Alignment explanation
Indices: 1739709--1739761 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
1739699 TTTAATACGA
1739709 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
*
1739736 AAGGGGTTGCTAAGTGTTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
1739762 GACTCATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:1739966 original size:33 final size:33
Alignment explanation
Indices: 1739919--1740083 Score: 150
Period size: 33 Copynumber: 4.7 Consensus size: 33
1739909 ATGTGAAAGG
* *
1739919 GGTTGCTAAATGCTGATTCCCTGAATTACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATTACTGGT
* * *
1739952 GGTTGCTAAGTGCTGATTCCCTGGATTATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATTACTGGT
* * * *
1739985 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-ATT--A-CTG--GT
*
1740026 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATTACTGGT
*
1740059 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
1740084 TAACAGATAA
Statistics
Matches: 108, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
33 69 0.64
34 6 0.06
35 2 0.02
36 3 0.03
38 2 0.02
39 3 0.03
40 3 0.03
41 20 0.19
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATTACTGGT
Found at i:1739998 original size:108 final size:106
Alignment explanation
Indices: 1739707--1740083 Score: 459
Period size: 104 Copynumber: 3.6 Consensus size: 106
1739697 CATTTAATAC
** *
1739707 GAAAGGGGTTGCTAAGTGCTGATTCCCCCA-A--GG-GGTTGCTAAGTGTTGATTCCCCGACTCA
1 GAAAGGGGTTGCTAAGTGCTGATTCCCGAATACTGGTGGTTGCTAAGTGCTGATTCCCCGACTCA
* * * * *
1739768 TTGGTGGTTGCTAAGTGTTGATTCCACCATATCCTTGAATAT
66 TTGGTGGTTGCTAAGTGCTGATCCCACCGTAT-CTTAAATGT
* ** * *
1739810 AAAAGGGGGTTGCTAAGTGCTGATTCCCCCA-A--GG-GGTTGCTAAGTGCAGGTTCCCCGACTC
1 GAAA-GGGGTTGCTAAGTGCTGATTCCCGAATACTGGTGGTTGCTAAGTGCTGATTCCCCGACTC
1739871 ATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGT
65 ATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGT
* *
1739913 GAAAGGGGTTGCTAAATGCTGATTCCCTGAATTACTGGTGGTTGCTAAGTGCTGATTCCCTGGA-
1 GAAAGGGGTTGCTAAGTGCTGATTCCC-GAA-TACTGGTGGTTGCTAAGTGCTGATTCCC-CGAC
*
1739977 TTATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGT
63 TCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGT
*
1740021 G-AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCACCGA
1 GAAAGGGGTTGCTAAGTGCTGATT-CCCGAAT-ACTGGTGGTTGCTAAGTGCTGATTCC-CCGA
1740084 TAACAGATAA
Statistics
Matches: 243, Mismatches: 20, Indels: 18
0.86 0.07 0.06
Matches are distributed among these distances:
102 22 0.09
103 14 0.06
104 83 0.34
105 1 0.00
106 1 0.00
107 53 0.22
108 67 0.28
109 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (106 bp):
GAAAGGGGTTGCTAAGTGCTGATTCCCGAATACTGGTGGTTGCTAAGTGCTGATTCCCCGACTCA
TTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGT
Found at i:1746652 original size:103 final size:101
Alignment explanation
Indices: 1746532--1746732 Score: 332
Period size: 103 Copynumber: 2.0 Consensus size: 101
1746522 GAATACGAAG
*
1746532 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGC-AAGTGCTGATTCCACCGTATCCT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTAT-CT
*
1746596 TGAATATAAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
65 TAAATAT-AAA-GGGGTTGCTAAGTGCTGATTCCCCCAA
1746635 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
* *
1746700 AAATGTGAAGGGGTTGCTAAGTGCTGATTCCCC
66 AAATATAAAGGGGTTGCTAAGTGCTGATTCCCC
1746733 GAATCACTGG
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
101 24 0.26
102 2 0.02
103 48 0.52
104 19 0.20
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (101 bp):
GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
AAATATAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Done.