genome.fa.s2811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold522
Parameters: 2 7 7 80 10 50 1000
Length:  93923

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7817--7848	15	2.1	15	100	0	64	31	18	6	43	1.75
7818--7852	15	2.5	14	90	9	54	34	22	5	37	1.78
16029--16079	18	2.8	18	74	14	50	50	0	5	43	1.26
18189--18231	15	2.9	15	89	3	70	65	13	20	0	1.27
33189--33364	43	4.1	43	84	7	241	19	19	28	32	1.96
33189--33364	86	2.0	86	93	2	300	19	19	28	32	1.96
33189--33395	86	2.4	86	86	3	274	22	19	26	31	1.98
33206--33395	43	4.4	43	76	6	161	23	20	26	30	1.98
54316--54382	29	2.3	29	80	10	75	46	16	14	22	1.84
54676--54734	9	6.7	9	76	9	59	71	3	1	23	1.11
56113--56383	44	6.1	43	72	12	192	31	23	13	31	1.93
56123--56374	88	2.9	87	83	5	303	32	23	13	30	1.93
56357--56698	88	3.9	88	89	0	513	24	26	22	26	2.00
56377--56705	43	7.5	43	68	4	192	23	27	23	25	2.00
56422--56950	176	3.0	176	86	3	631	24	25	22	27	2.00
56776--57345	218	2.6	218	94	0	996	22	23	23	30	1.99
58731--58760	15	1.9	16	93	6	53	0	16	3	80	0.85
63177--63231	3	18.7	3	79	3	58	69	3	1	25	1.15
63170--63233	9	6.8	9	78	8	65	70	3	1	25	1.11
69476--69505	12	2.5	12	94	0	51	23	40	30	6	1.80
75387--75436	18	2.7	19	79	14	61	52	0	10	38	1.35
75560--75611	14	3.6	14	82	5	68	26	7	3	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75880--75917	20	1.9	20	100	0	76	50	5	18	26	1.68
82118--82148	13	2.4	13	94	0	53	3	19	45	32	1.66
82631--82894	68	3.9	68	89	0	357	25	21	17	36	1.94
84957--85009	23	2.3	24	77	9	65	24	18	13	43	1.86
86331--86770	85	5.2	85	100	0	880	51	4	3	40	1.39
86403--86768	17	21.5	17	66	22	96	51	4	3	40	1.38
90454--90510	22	2.6	22	88	0	78	22	14	15	47	1.82
91813--91915	13	7.9	13	78	4	109	33	4	24	37	1.77

Tables:   1

The End!