genome.fa.s2816.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold336
Parameters: 2 7 7 80 10 50 1000
Length:  503701

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293003--293366	159	2.3	158	87	5	493	27	7	8	56	1.56
293469--293537	27	2.6	27	83	6	95	8	36	31	23	1.85
303773--304019	42	5.9	42	85	0	251	31	19	21	27	1.97
304420--304452	17	2.0	17	88	5	50	60	0	0	39	0.97
307568--307807	88	2.7	87	82	0	264	33	27	24	14	1.94
310568--310618	23	2.2	23	89	0	75	29	9	19	41	1.84
310958--310995	19	2.0	19	85	10	51	34	5	0	60	1.19
312126--312230	56	1.9	55	84	2	138	28	8	15	47	1.74
328735--328778	3	14.7	3	95	0	79	65	0	2	31	1.05
329222--329324	51	2.0	51	100	0	206	29	17	15	37	1.91
333304--333330	3	9.0	3	100	0	54	0	66	0	33	0.92
338377--338425	26	2.0	24	88	8	71	28	2	4	65	1.22
356082--356112	2	16.0	2	93	6	55	51	0	0	48	1.00
358059--358083	10	2.5	10	100	0	50	24	40	12	24	1.88
365102--365155	19	2.8	19	94	0	99	37	16	9	37	1.81
366441--366474	5	6.8	5	96	0	59	41	14	0	44	1.45
366522--366571	17	2.9	17	75	16	50	34	4	6	56	1.43
372163--372225	26	2.4	26	81	0	72	25	39	17	17	1.91
372183--372233	26	2.0	26	96	0	93	21	41	19	17	1.91
373187--373225	19	2.1	19	90	0	60	35	2	20	41	1.66
377700--377775	17	4.4	18	76	5	68	17	39	25	18	1.91
377709--377776	17	3.9	18	76	5	70	14	39	26	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379553--379638	41	2.1	41	82	4	102	32	24	17	25	1.97
379778--379912	31	4.4	31	78	5	157	42	15	13	28	1.85
379779--379912	61	2.2	62	86	1	189	42	15	13	28	1.85
379755--379961	92	2.2	92	76	7	206	42	15	9	31	1.79
379890--379992	31	3.4	30	74	11	84	42	16	7	33	1.77
387948--388109	50	3.2	50	71	16	145	24	16	23	35	1.95
389503--389570	13	5.0	13	81	12	75	10	17	0	72	1.12
389503--389575	20	3.7	20	85	7	96	9	16	0	73	1.07
389503--389570	7	10.0	7	78	13	72	10	17	0	72	1.12
390269--390328	22	2.7	23	78	19	65	16	6	10	66	1.41
414136--414171	18	2.0	18	88	0	54	66	2	0	30	1.06
415702--415743	21	2.0	21	100	0	84	19	33	4	42	1.72
415960--415990	15	2.1	15	93	0	53	22	16	19	41	1.89
416276--416301	13	2.0	13	100	0	52	46	0	30	23	1.53
418641--418677	14	2.7	14	88	12	51	37	13	5	43	1.67
424034--424075	18	2.3	18	80	8	50	76	2	21	0	0.90
426584--426608	1	25.0	1	100	0	50	100	0	0	0	0.00
426271--426851	289	2.0	290	98	1	1121	44	11	13	30	1.79
433012--433049	2	19.0	2	100	0	76	50	0	50	0	1.00
443467--443528	26	2.7	22	77	18	56	32	11	3	53	1.53
446039--446186	73	2.0	74	98	1	289	55	4	8	32	1.48
446873--446918	17	2.8	17	86	3	58	43	0	54	2	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450132--450183	19	2.7	19	93	0	95	36	9	15	38	1.80
450132--450208	38	1.9	40	87	10	113	36	9	15	38	1.79
450617--450660	17	2.6	17	85	3	63	40	11	0	47	1.39
450707--450760	20	2.6	21	77	14	58	31	1	3	62	1.23
450696--450760	14	4.8	13	74	9	51	29	1	3	66	1.16
482108--482191	41	2.0	41	95	0	150	33	17	17	30	1.94
483714--483777	19	3.3	20	85	6	62	26	21	0	51	1.48
486021--486047	13	2.1	13	100	0	54	48	0	14	37	1.45
490229--490379	72	2.1	73	94	1	268	35	15	19	28	1.93
492220--492276	24	2.4	25	82	14	75	47	8	36	7	1.62
497152--497187	17	2.2	17	90	5	56	75	2	16	5	1.12
501466--501518	23	2.3	23	83	0	70	39	16	26	16	1.91
501877--501972	48	2.0	48	97	0	183	44	16	3	35	1.64
502879--502928	5	10.2	5	89	6	68	58	2	0	40	1.10

Tables:   1   2

The End!