Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold543
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72019
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.30
Warning! 4555 characters in sequence are not A, C, G, or T
Found at i:4235 original size:42 final size:43
Alignment explanation
Indices: 4123--4237 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 43
4113 GTTTTTGTAT
* * *
4123 AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGGGTTTTAAAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
* ***** *
4166 AAAAACGCCACTATTTTTCATGTTCTTTAGCGGCG-CTTAAGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
* *
4208 ATAAACGCCGCTAAAGAACATGATCTTTAG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAG
4238 TTCTTTAGCG
Statistics
Matches: 54, Mismatches: 18, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
Found at i:4298 original size:42 final size:42
Alignment explanation
Indices: 4239--4339 Score: 159
Period size: 42 Copynumber: 2.4 Consensus size: 42
4229 GATCTTTAGT
4239 TCTTTAGCGGCGTTTTTTTCT-AAGCGCCGCTAAACAACATGG
1 TCTTTAGCGGCGTTTTTTT-TAAAGCGCCGCTAAACAACATGG
* * *
4281 TCTTTAACGGTGTTTTTTTTAAAGCGCCGCTAAAGAACATGG
1 TCTTTAGCGGCGTTTTTTTTAAAGCGCCGCTAAACAACATGG
4323 TCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGTTTTT
4340 GTTTGTAAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.38
Consensus pattern (42 bp):
TCTTTAGCGGCGTTTTTTTTAAAGCGCCGCTAAACAACATGG
Found at i:4685 original size:22 final size:22
Alignment explanation
Indices: 4660--4701 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
4650 TCTCAAAGCT
*
4660 CTTTTAAATT-TCTCTCAATTCC
1 CTTTT-AATTCTCACTCAATTCC
4682 CTTTTAATTCTCACTCAATT
1 CTTTTAATTCTCACTCAATT
4702 TTTATTCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (22 bp):
CTTTTAATTCTCACTCAATTCC
Found at i:12242 original size:7 final size:7
Alignment explanation
Indices: 12230--12255 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12220 TTTATCAAAA
12230 ATAAATT
1 ATAAATT
12237 ATAAATT
1 ATAAATT
12244 ATAAATT
1 ATAAATT
12251 ATAAA
1 ATAAA
12256 CAAAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
ATAAATT
Found at i:13800 original size:3 final size:3
Alignment explanation
Indices: 13792--13828 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
13782 TCGCTCTATA
13792 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13829 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:16726 original size:24 final size:24
Alignment explanation
Indices: 16698--16749 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
16688 TTAGTAAGTC
* * *
16698 AAATAAACTGTGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
16722 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
16746 AAAT
1 AAAT
16750 CTTTTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:20411 original size:7 final size:7
Alignment explanation
Indices: 20399--20439 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
20389 GGGGTGATTC
20399 GGGTTTA
1 GGGTTTA
20406 GGGTTTA
1 GGGTTTA
20413 GGGTTTA
1 GGGTTTA
20420 GGGTTTA
1 GGGTTTA
*
20427 AGGTTTA
1 GGGTTTA
20434 GGGTTT
1 GGGTTT
20440 TGGGGCTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:21402 original size:138 final size:138
Alignment explanation
Indices: 20967--21404 Score: 472
Period size: 138 Copynumber: 3.2 Consensus size: 138
20957 TGCTTCTTTC
* *
20967 CAACTTCAAAGAGATAAGATTT-TTCGTTGTAGCTTC-ATTCTAACCCAA-TGCAACTTCAGGGG
1 CAACTTCAGAGAGATAAGATTTGTT-GTTGTAGCTTCAATTC-GA-CCAACTGCAACTTCAGGGG
* * * * * *
21029 TAT-GCGAATTGTAGTTTCAATCTACTCCGCTGTAACTTTAAGGA-ACTGAGATTCGTAGCTTCA
63 TATAG-GATTTGTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGA-TAAGATTCGTAGCTTCA
*
21092 ATCTGCTCCACTA
126 ATCTGCTCCACTG
* * * * * * * * * * *
21105 CAACTTCAGGGAGATAAGGTTCGCTATGGTAGATTCAATCCGACCCACTACAACTTGAGGGGTAT
1 CAACTTCAGAGAGATAAGATTTGTTGTTGTAGCTTCAATTCGACCAACTGCAACTTCAGGGGTAT
* ** *
21170 AGGATTTGTAGCTTCAATCTACTCCACAACAACTTCAGGGAGTTAAGATTCGTAGCTTCAATCTG
66 AGGATTTGTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTG
21235 CTCCACTG
131 CTCCACTG
* * * * * *
21243 CAAGTTTAGAGAGGTAAGATTTGTTGTTCTGGCTTCAATTCGACCAACTGCAACTTTAGGGGTAT
1 CAACTTCAGAGAGATAAGATTTGTTGTTGTAGCTTCAATTCGACCAACTGCAACTTCAGGGGTAT
* * ** *
21308 AGGATTTGTAGTTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTG
66 AGGATTTGTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTG
21373 CTCCACTG
131 CTCCACTG
*
21381 CAACTTCAGGGAGATAAGATTTGT
1 CAACTTCAGAGAGATAAGATTTGT
21405 AGCTTTAATC
Statistics
Matches: 242, Mismatches: 53, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
137 3 0.01
138 234 0.97
139 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (138 bp):
CAACTTCAGAGAGATAAGATTTGTTGTTGTAGCTTCAATTCGACCAACTGCAACTTCAGGGGTAT
AGGATTTGTAGTTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTG
CTCCACTG
Found at i:21423 original size:88 final size:88
Alignment explanation
Indices: 21015--21485 Score: 335
Period size: 88 Copynumber: 5.2 Consensus size: 88
21005 TCTAACCCAA
** * * * * * * * *
21015 TGCAACTTCAGGG-GTATGCGAATTGTAGTTTCAATCTACTCCGCTGTAACTTTAAGGA-ACTGA
1 TGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGA-TAA
* *
21078 GATTCGTAGCTTCAATCTGCTCCAC
64 GATTTGTAGCTTTAATCTGCTCCAC
* * * * * *
21103 TACAACTTCAGGGAGATAAGGTTCGCTATGGTAGATTCAATCCGAC-CCACTACAACTTGAGGG-
1 TGCAACTTCAGGGAGATAA-GAT---T-T-GTAGCTTCAATCTG-CTCCACTGCAACTTCAGGGA
* * *
21166 GTATAGGATTTGTAGCTTCAATCTACTCCAC
59 G-ATAAGATTTGTAGCTTTAATCTGCTCCAC
** * * * * * *
21197 AACAACTTCAGGGAGTTAAGATTCGTAGCTTCAATCTGCTCCACTGCAAGTTTAGAGAGGTAAGA
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* *
21262 TTTGTTGTTCTGGCTTCAAT-TCGAC-CAAC
66 TTTGTAG--CT---TT-AATCT-G-CTCCAC
* * * *
21291 TGCAACTTTAGGG-GTATAGGATTTGTAGTTTCAATCTGCTCCATTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
*
21355 ATTTATAGCTTTAATCTGCTCCAC
65 ATTTGTAGCTTTAATCTGCTCCAC
* *
21379 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * *
21444 TTTGTAGCTTTAATATGATACAC
66 TTTGTAGCTTTAATCTGCTCCAC
* *
21467 TGTAACTTCAGGGATATAA
1 TGCAACTTCAGGGAGATAA
21486 AATTCTCTAT
Statistics
Matches: 301, Mismatches: 58, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
87 2 0.01
88 151 0.50
89 7 0.02
90 3 0.01
92 3 0.01
93 6 0.02
94 126 0.42
95 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (88 bp):
TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTTGTAGCTTTAATCTGCTCCAC
Found at i:21454 original size:44 final size:44
Alignment explanation
Indices: 21077--21485 Score: 317
Period size: 44 Copynumber: 9.0 Consensus size: 44
21067 TAAGGAACTG
* * *
21077 AGATTCGTAGCTTCAATCTGCTCCACTACAACTTCAGGGAGATA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * * *
21121 AGGTTCGCTATGGTAGATTCAATCCGAC-CCACTACAACTTGAGGG-GTATA
1 A-GAT---T-T-GTAGCTTTAATCTG-CTCCACTGCAACTTCAGGGAG-ATA
* * * ** *
21171 GGATTTGTAGCTTCAATCTACTCCACAACAACTTCAGGGAGTTA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * * *
21215 AGATTCGTAGCTTCAATCTGCTCCACTGCAAGTTTAGAGAGGTA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
21259 AGATTTGTTGTTCTGGCTTCAAT-TCGAC-CAACTGCAACTTTAGGG-GTATA
1 AGATTTGTAG--CT---TT-AATCT-G-CTCCACTGCAACTTCAGGGAG-ATA
* *
21309 GGATTTGTAG-TTTCAATCTGCTCCATTGCAACTTCAGGGAGATA
1 AGATTTGTAGCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATA
*
21353 AGATTTATAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
*
21397 AGATTTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
21441 AGATTTGTAGCTTTAATATGATACACTGTAACTTCAGGGATATA
1 AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
21485 A
1 A
21486 AATTCTCTAT
Statistics
Matches: 297, Mismatches: 45, Indels: 46
0.77 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 214 0.72
45 9 0.03
46 3 0.01
47 1 0.00
48 1 0.00
49 6 0.02
50 59 0.20
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (44 bp):
AGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
Found at i:28338 original size:4 final size:4
Alignment explanation
Indices: 28329--28361 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
28319 TGTAATACTG
28329 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA A
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA A
28362 AAAAGAGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
ATGA
Found at i:36064 original size:16 final size:17
Alignment explanation
Indices: 36045--36077 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36035 AATAATTTTT
*
36045 TTTGAGTTTTT-GCATA
1 TTTGAATTTTTGGCATA
36061 TTTGAATTTTTGGCATA
1 TTTGAATTTTTGGCATA
36078 CATTTTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.55
Consensus pattern (17 bp):
TTTGAATTTTTGGCATA
Found at i:39287 original size:17 final size:16
Alignment explanation
Indices: 39267--39302 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
39257 ATAAAATTAT
39267 TAAATATTAAAATAAAA
1 TAAATATTAAAA-AAAA
*
39284 TAAATATTTAAAAAAA
1 TAAATATTAAAAAAAA
39300 TAA
1 TAA
39303 TATGAGTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAATATTAAAAAAAA
Found at i:39663 original size:17 final size:16
Alignment explanation
Indices: 39641--39676 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
39631 TATAAATTAT
39641 TAAATATTAAAATAAAA
1 TAAATATTAAAA-AAAA
*
39658 TAAATATTTAAAAAAA
1 TAAATATTAAAAAAAA
39674 TAA
1 TAA
39677 TATGAGTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAATATTAAAAAAAA
Found at i:39714 original size:374 final size:375
Alignment explanation
Indices: 39248--40000 Score: 1499
Period size: 374 Copynumber: 2.0 Consensus size: 375
39238 TTCAATAAAT
39248 AAAAAATGTATAAAATTATTAAATATTAAAATAAAATAAATATTTAAAAAAATAATATGAGTGGG
1 AAAAAATGTATAAAATTATTAAATATTAAAATAAAATAAATATTTAAAAAAATAATATGAGTGGG
39313 CCTAAAATTGGCTTGGGTTAGTTTTTCACAAATATGAATAAGTTTGAGTAAAATTTTAAACCCGT
66 CCTAAAATTGGCTTGGGTTAGTTTTTCACAAATATGAATAAGTTTGAGTAAAATTTTAAACCCGT
39378 ATTTTAAATCTAATCGAGTTTAAAAAATATAAAATATATTAACATCATGTTTAAGTCCGGCCCAA
131 ATTTTAAATCTAATCGAGTTTAAAAAATATAAAATATATTAACATCATGTTTAAGTCCGGCCCAA
39443 ACAAGAAAAAAGGTATGAAGAGATGATACTAATGGGCAGATAATAAAAGCAGAAACAGCTTTGCC
196 ACAAGAAAAAAGGTATGAAGAGATGATACTAATGGGCAGATAATAAAAGCAGAAACAGCTTTGCC
39508 TTATCATCATCACTTTTTGAAATTTGAAACTGGGTAAAATGTAAGCGCAAACCAAGGTAAGCTCA
261 TTATCATCATCACTTTTTGAAATTTGAAACTGGGTAAAATGTAAGCGCAAACCAAGGTAAGCTCA
39573 GCTATGTACGTATGTAAATCTATATTACGTAACGGTGGGGGAGTATCAAA
326 GCTATGTACGTATGTAAATCTATATTACGTAACGGTGGGGGAGTATCAAA
39623 AAAAAATGTAT-AAATTATTAAATATTAAAATAAAATAAATATTTAAAAAAATAATATGAGTGGG
1 AAAAAATGTATAAAATTATTAAATATTAAAATAAAATAAATATTTAAAAAAATAATATGAGTGGG
39687 CCTAAAATTGGCTTGGGTTAGTTTTTCACAAATATGAATAAGTTTGAGTAAAATTTTAAACCCGT
66 CCTAAAATTGGCTTGGGTTAGTTTTTCACAAATATGAATAAGTTTGAGTAAAATTTTAAACCCGT
39752 ATTTTAAATCTAATCGAGTTTAAAAAATATAAAATATATTAACATCATGTTTAAGTCCGGCCCAA
131 ATTTTAAATCTAATCGAGTTTAAAAAATATAAAATATATTAACATCATGTTTAAGTCCGGCCCAA
39817 ACAAGAAAAAAGGTATGAAGAGATGATACTAATGGGCAGATAATAAAAGCAGAAACAGCTTTGCC
196 ACAAGAAAAAAGGTATGAAGAGATGATACTAATGGGCAGATAATAAAAGCAGAAACAGCTTTGCC
39882 TTATCATCATCACTTTTTGAAATTTGAAACTGGGTAAAATGTAAGCGCAAACCAAGGTAAGCTCA
261 TTATCATCATCACTTTTTGAAATTTGAAACTGGGTAAAATGTAAGCGCAAACCAAGGTAAGCTCA
39947 GCTATGTACGTATGTAAATCTATATTACGTAACGGTGGGGGAGTATCAAA
326 GCTATGTACGTATGTAAATCTATATTACGTAACGGTGGGGGAGTATCAAA
39997 AAAA
1 AAAA
40001 TTTATTTCCC
Statistics
Matches: 378, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
374 367 0.97
375 11 0.03
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.29
Consensus pattern (375 bp):
AAAAAATGTATAAAATTATTAAATATTAAAATAAAATAAATATTTAAAAAAATAATATGAGTGGG
CCTAAAATTGGCTTGGGTTAGTTTTTCACAAATATGAATAAGTTTGAGTAAAATTTTAAACCCGT
ATTTTAAATCTAATCGAGTTTAAAAAATATAAAATATATTAACATCATGTTTAAGTCCGGCCCAA
ACAAGAAAAAAGGTATGAAGAGATGATACTAATGGGCAGATAATAAAAGCAGAAACAGCTTTGCC
TTATCATCATCACTTTTTGAAATTTGAAACTGGGTAAAATGTAAGCGCAAACCAAGGTAAGCTCA
GCTATGTACGTATGTAAATCTATATTACGTAACGGTGGGGGAGTATCAAA
Found at i:44589 original size:23 final size:23
Alignment explanation
Indices: 44554--44597 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
44544 ATGGATTTGG
44554 TTTGATGTAGAGAAGATCAATTCC
1 TTTGATGTAGAGAAGAT-AATTCC
* *
44578 TTTG-TGTTGAGATGATAATT
1 TTTGATGTAGAGAAGATAATT
44598 ATGGGTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (23 bp):
TTTGATGTAGAGAAGATAATTCC
Found at i:45540 original size:39 final size:40
Alignment explanation
Indices: 45496--45609 Score: 135
Period size: 39 Copynumber: 2.8 Consensus size: 40
45486 AAATTATCCA
45496 ACCCAACCCAATAAAACTAAAACTAAAA-TCTACCCAATT
1 ACCCAACCCAATAAAACTAAAACTAAAAGTCTACCCAATT
*
45535 ACCCAACCTAATAAAACTAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATAAAACTAAAACT---A--AAAGTCTACCCAATT
* *
45580 A-CCAACTCAATAAAAATAAAACT-AAAGTCT
1 ACCCAACCCAATAAAACTAAAACTAAAAGTCT
45610 GACTCTTAAG
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
38 7 0.11
39 23 0.35
42 1 0.02
44 22 0.34
45 12 0.18
ACGTcount: A:0.53, C:0.26, G:0.02, T:0.19
Consensus pattern (40 bp):
ACCCAACCCAATAAAACTAAAACTAAAAGTCTACCCAATT
Found at i:45600 original size:44 final size:45
Alignment explanation
Indices: 45505--45605 Score: 161
Period size: 45 Copynumber: 2.3 Consensus size: 45
45495 AACCCAACCC
45505 AATAAAACTAAAACTAAAATCTACCCAATTACCCAACCTAATAAA
1 AATAAAACTAAAACTAAAATCTACCCAATTACCCAACCTAATAAA
* *
45550 ACTAAAACTAAAACTAAAGTCTACCCAATTA-CCAA-CTCAATAAA
1 AATAAAACTAAAACTAAAATCTACCCAATTACCCAACCT-AATAAA
45594 AATAAAACTAAA
1 AATAAAACTAAA
45606 GTCTGACTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
43 2 0.04
44 21 0.40
45 29 0.56
ACGTcount: A:0.56, C:0.23, G:0.01, T:0.20
Consensus pattern (45 bp):
AATAAAACTAAAACTAAAATCTACCCAATTACCCAACCTAATAAA
Found at i:45767 original size:17 final size:17
Alignment explanation
Indices: 45747--45809 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
45737 TAATTTCAAG
45747 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
45764 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
45782 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
45801 AATTATGTA
1 AATTATGTA
45810 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:45771 original size:37 final size:37
Alignment explanation
Indices: 45744--45818 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
45734 TGTTAATTTC
* *
45744 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
45781 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
45818 A
1 A
45819 TTCGGGGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:50053 original size:23 final size:23
Alignment explanation
Indices: 50005--50056 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
49995 AAATCTAATG
50005 TTTTCTTGTTGTTTTACTACTAT
1 TTTTCTTGTTGTTTTACTACTAT
* *
50028 TTTTTTTGTTGTTTT-CTCACTGT
1 TTTTCTTGTTGTTTTACT-ACTAT
50051 TTTTCT
1 TTTTCT
50057 ACCATTTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 2 0.08
23 23 0.92
ACGTcount: A:0.08, C:0.13, G:0.10, T:0.69
Consensus pattern (23 bp):
TTTTCTTGTTGTTTTACTACTAT
Found at i:52712 original size:106 final size:106
Alignment explanation
Indices: 52558--52770 Score: 354
Period size: 106 Copynumber: 2.0 Consensus size: 106
52548 ATCAATTTAT
* * *
52558 CTCTACTTAATCCCGTCAAATTTCGTGAGCTCTCCTCGAAGTAGGGAGATAAAATTCAAGTTAAA
1 CTCTACTTAATCCCGTCAAATTTCGTGAGCTCTCCTCAAAGTAGGGAGATAAAAATCAAATTAAA
* *
52623 ACCAAGCATAGACACCTTAAGGACAATATCACTATTGTCAA
66 ACCAAGCATAGACACCTTAAGCACAATATCACTATTGGCAA
*
52664 CTCTACTTAATCCTGTCAAATTTCGTGAGCTCTCCTCAAAGTAGGGAGATAAAAATCAAATTAAA
1 CTCTACTTAATCCCGTCAAATTTCGTGAGCTCTCCTCAAAGTAGGGAGATAAAAATCAAATTAAA
* *
52729 AGCGAGCATAGACACCTTAAGCACAATATCACTATTGGCAA
66 ACCAAGCATAGACACCTTAAGCACAATATCACTATTGGCAA
52770 C
1 C
52771 CTGTTATTAA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
106 99 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (106 bp):
CTCTACTTAATCCCGTCAAATTTCGTGAGCTCTCCTCAAAGTAGGGAGATAAAAATCAAATTAAA
ACCAAGCATAGACACCTTAAGCACAATATCACTATTGGCAA
Found at i:58577 original size:34 final size:35
Alignment explanation
Indices: 58533--58599 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
58523 CAGTAAAATA
*
58533 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
58567 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
58600 CTGGTNNNNN
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:59700 original size:14 final size:14
Alignment explanation
Indices: 59681--59722 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
59671 GGACTTGAAC
59681 TTTTATTTATTTGG
1 TTTTATTTATTTGG
59695 TTTTATTTATTT--
1 TTTTATTTATTTGG
*
59707 TATTATTT-TTTGG
1 TTTTATTTATTTGG
59720 TTT
1 TTT
59723 ATGGTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
11 3 0.12
12 7 0.29
13 2 0.08
14 12 0.50
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TTTTATTTATTTGG
Found at i:60507 original size:178 final size:179
Alignment explanation
Indices: 60207--60564 Score: 709
Period size: 178 Copynumber: 2.0 Consensus size: 179
60197 TTATATTATT
60207 ATATATATAATACAAAAAAAAAAACTAAAAACATTAAAATAAATGTTTCTTAACAACTTAAAATA
1 ATATATATAATACAAAAAAAAAAACTAAAAACATTAAAATAAATGTTTCTTAACAACTTAAAATA
60272 AGTTAAAAAAAATGTATACTTAAATAACATGCAACTTAACAAGCAAACGTCTCTAAAATAATGAT
66 AGTTAAAAAAAATGTATACTTAAATAACATGCAACTTAACAAGCAAACGTCTCTAAAATAATGAT
60337 AAAATTAATAATAAAACAAGAGTTATATAATATTCAAACAATAACAACA
131 AAAATTAATAATAAAACAAGAGTTATATAATATTCAAACAATAACAACA
60386 ATATATATAAT-CAAAAAAAAAAACTAAAAACATTAAAATAAATGTTTCTTAACAACTTAAAATA
1 ATATATATAATACAAAAAAAAAAACTAAAAACATTAAAATAAATGTTTCTTAACAACTTAAAATA
60450 AGTTAAAAAAAATGTATACTTAAATAACATGCAACTTAACAAGCAAACGTCTCTAAAATAATGAT
66 AGTTAAAAAAAATGTATACTTAAATAACATGCAACTTAACAAGCAAACGTCTCTAAAATAATGAT
60515 AAAATTAATAATAAAACAAGAGTTATATAATATTCAAACAATAACAACA
131 AAAATTAATAATAAAACAAGAGTTATATAATATTCAAACAATAACAACA
60564 A
1 A
60565 AATAATAGCA
Statistics
Matches: 179, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
178 168 0.94
179 11 0.06
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.26
Consensus pattern (179 bp):
ATATATATAATACAAAAAAAAAAACTAAAAACATTAAAATAAATGTTTCTTAACAACTTAAAATA
AGTTAAAAAAAATGTATACTTAAATAACATGCAACTTAACAAGCAAACGTCTCTAAAATAATGAT
AAAATTAATAATAAAACAAGAGTTATATAATATTCAAACAATAACAACA
Found at i:60684 original size:27 final size:26
Alignment explanation
Indices: 60653--60716 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
60643 TTTATCGAGG
* **
60653 TTATTAGTTTATTGATAAATGAATATT
1 TTATTAATTTATCAATAAATGAATA-T
*
60680 TTATTAATTTATCAATAAATTAATAT
1 TTATTAATTTATCAATAAATGAATAT
60706 TTATTAATTTA
1 TTATTAATTTA
60717 GAGAACATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 12 0.36
27 21 0.64
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.53
Consensus pattern (26 bp):
TTATTAATTTATCAATAAATGAATAT
Found at i:60865 original size:34 final size:34
Alignment explanation
Indices: 60791--60869 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 34
60781 AATGAATCAA
* **
60791 AGTTAATTGGTTCATGTAACAAAAAAGAAGAGTG
1 AGTTAATTGGTTCATGTAACAAAAAAGAAAAAAG
* *
60825 AATTAATTGGTTCATGTAACCAAAAAGAAAAAAG
1 AGTTAATTGGTTCATGTAACAAAAAAGAAAAAAG
60859 AGTTAA-TGGTT
1 AGTTAATTGGTT
60870 TCAAAATCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 5 0.13
34 34 0.87
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.28
Consensus pattern (34 bp):
AGTTAATTGGTTCATGTAACAAAAAAGAAAAAAG
Found at i:61859 original size:29 final size:29
Alignment explanation
Indices: 61817--61929 Score: 147
Period size: 29 Copynumber: 3.9 Consensus size: 29
61807 AAAAAATAAA
61817 AAATTACATTTTAACCCCTAAACTTTTTG
1 AAATTACATTTTAACCCCTAAACTTTTTG
* * *
61846 AAATTGCATTTTAACCCCTAAA-TTTCATA
1 AAATTACATTTTAACCCCTAAACTTT-TTG
* *
61875 AAATTACATTTTGACCCATAAACTTTTTG
1 AAATTACATTTTAACCCCTAAACTTTTTG
* *
61904 AAATTACGTTTTGACCCCTAAACTTT
1 AAATTACATTTTAACCCCTAAACTTT
61930 CTCAAAATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
28 3 0.04
29 66 0.92
30 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.40
Consensus pattern (29 bp):
AAATTACATTTTAACCCCTAAACTTTTTG
Found at i:61879 original size:58 final size:59
Alignment explanation
Indices: 61816--61938 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
61806 AAAAAAATAA
* *
61816 AAAATTACATTTTAACCCCTAAACTTTTTGAAATTGCATTTTAACCCCTAAA-TTTCAT-
1 AAAATTACATTTTAACCCATAAACTTTTTGAAATTACATTTTAACCCCTAAACTTTC-TC
* * *
61874 AAAATTACATTTTGACCCATAAACTTTTTGAAATTACGTTTTGACCCCTAAACTTTCTC
1 AAAATTACATTTTAACCCATAAACTTTTTGAAATTACATTTTAACCCCTAAACTTTCTC
61933 AAAATT
1 AAAATT
61939 TTGTTTTGGC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
58 48 0.83
59 10 0.17
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (59 bp):
AAAATTACATTTTAACCCATAAACTTTTTGAAATTACATTTTAACCCCTAAACTTTCTC
Found at i:61945 original size:30 final size:29
Alignment explanation
Indices: 61816--61960 Score: 114
Period size: 29 Copynumber: 5.0 Consensus size: 29
61806 AAAAAAATAA
* * *
61816 AAAATTACATTTTAACCCCTAAACTTTTT
1 AAAATTACGTTTTGACCCCTAAACTTTTC
* * * *
61845 GAAATTGCATTTTAACCCCTAAA--TTTC
1 AAAATTACGTTTTGACCCCTAAACTTTTC
* * *
61872 ATAAAATTACATTTTGACCCATAAACTTTTT
1 --AAAATTACGTTTTGACCCCTAAACTTTTC
*
61903 GAAATTACGTTTTGACCCCTAAACTTTCTC
1 AAAATTACGTTTTGACCCCTAAACTTT-TC
** * *
61933 AAAATTTTGTTTTGGCCCCAAAACTTTT
1 AAAATTACGTTTTGACCCCTAAACTTTT
61961 GCTGCATTTA
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.03
29 65 0.69
30 23 0.24
31 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (29 bp):
AAAATTACGTTTTGACCCCTAAACTTTTC
Found at i:61961 original size:58 final size:57
Alignment explanation
Indices: 61816--61960 Score: 157
Period size: 58 Copynumber: 2.5 Consensus size: 57
61806 AAAAAAATAA
* * *
61816 AAAATTACATTTTAACCCCTAAACTTTTTGAAATTGCATTTTAACCCCTAAATTTCAT
1 AAAATTACATTTT-GCCCCAAAACTTTTTGAAATTACATTTTAACCCCTAAATTTCAT
* * *
61874 AAAATTACATTTTGACCCATAAACTTTTTGAAATTACGTTTTGACCCCTAAACTTTC-T
1 AAAATTACATTTTGCCCCA-AAACTTTTTGAAATTACATTTTAACCCCTAAA-TTTCAT
***
61932 CAAAATTTTGTTTTGGCCCCAAAACTTTT
1 -AAAATTACATTTT-GCCCCAAAACTTTT
61961 GCTGCATTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
57 3 0.04
58 43 0.59
59 22 0.30
60 5 0.07
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (57 bp):
AAAATTACATTTTGCCCCAAAACTTTTTGAAATTACATTTTAACCCCTAAATTTCAT
Found at i:62294 original size:3 final size:3
Alignment explanation
Indices: 62286--62356 Score: 58
Period size: 3 Copynumber: 23.3 Consensus size: 3
62276 GGCCGAACGG
* *
62286 AGA AGA AGA AGG AGA A-A A-A AGA AGA AGA AAA AG- AGAA AGA AGGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA A-GA
*
62330 AGGA AGA AGA AGA ACGA AGA AAA AGA A
1 A-GA AGA AGA AGA A-GA AGA AGA AGA A
62357 AAAAAAAGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
2 6 0.11
3 39 0.68
4 12 0.21
ACGTcount: A:0.68, C:0.01, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:62309 original size:13 final size:13
Alignment explanation
Indices: 62291--62370 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
62281 AACGGAGAAG
*
62291 AAGAAGGAGAAAA
1 AAGAAGAAGAAAA
62304 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
**
62317 AGAGAAAGAAGGAAGG
1 A-AG-AAGAA-GAAAA
**
62333 AAGAAGAAGAACG
1 AAGAAGAAGAAAA
*
62346 AAGAAAAAGAAAA
1 AAGAAGAAGAAAA
*
62359 AAAAAGAA-AAAA
1 AAGAAGAAGAAAA
62371 TATTTTTTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
12 4 0.07
13 33 0.60
14 7 0.13
15 7 0.13
16 4 0.07
ACGTcount: A:0.72, C:0.01, G:0.26, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAAA
Found at i:62525 original size:29 final size:28
Alignment explanation
Indices: 62471--62530 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
62461 CCAGCAGCCC
* *
62471 AAAGAAAAAACAAAAAAAAAAGAGG-CA
1 AAAGAAAAAAAAAAAAAAAAACAGGCCA
62498 AAAGCAAAAAAAAAAAAAAGAAACAGGCCA
1 AAAG-AAAAAAAAAAAAAA-AAACAGGCCA
62528 AAA
1 AAA
62531 ACAGCCCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.14
28 13 0.46
29 6 0.21
30 5 0.18
ACGTcount: A:0.77, C:0.10, G:0.13, T:0.00
Consensus pattern (28 bp):
AAAGAAAAAAAAAAAAAAAAACAGGCCA
Found at i:62564 original size:17 final size:17
Alignment explanation
Indices: 62535--62569 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
62525 CCAAAAACAG
62535 CCCAAGCGCAGGCCCAA
1 CCCAAGCGCAGGCCCAA
62552 CCCAA-CGCTAGGCCCAA
1 CCCAAGCGC-AGGCCCAA
62569 C
1 C
62570 GGCAGGCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.29, C:0.49, G:0.20, T:0.03
Consensus pattern (17 bp):
CCCAAGCGCAGGCCCAA
Found at i:62612 original size:26 final size:26
Alignment explanation
Indices: 62579--62638 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
62569 CGGCAGGCCT
*
62579 AGCAGGCCAGCCAGCCCAACGCCAGC
1 AGCAGGCCAGCCAGCCCAACACCAGC
62605 AGCAGGCCAGCCAGCCCAACACCAGC
1 AGCAGGCCAGCCAGCCCAACACCAGC
62631 AGCAGGCC
1 AGCAGGCC
62639 CAATAGCACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.28, C:0.45, G:0.27, T:0.00
Consensus pattern (26 bp):
AGCAGGCCAGCCAGCCCAACACCAGC
Found at i:62650 original size:14 final size:14
Alignment explanation
Indices: 62628--62672 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
62618 GCCCAACACC
62628 AGCAGCAGGCCCAA
1 AGCAGCAGGCCCAA
62642 TAGCA-CAGGCCCCAA
1 -AGCAGCAGG-CCCAA
62657 AGGCAGCAGGCCCAA
1 A-GCAGCAGGCCCAA
62672 A
1 A
62673 AAAAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 5 0.19
15 18 0.67
16 4 0.15
ACGTcount: A:0.36, C:0.36, G:0.27, T:0.02
Consensus pattern (14 bp):
AGCAGCAGGCCCAA
Found at i:62688 original size:15 final size:14
Alignment explanation
Indices: 62670--62717 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 14
62660 CAGCAGGCCC
62670 AAAAAAAGAGAGAAA
1 AAAAAAAGA-AGAAA
*
62685 AAAAGAAAAAAGAAA
1 AAAA-AAAGAAGAAA
62700 AAGAAAAAGAAGAAA
1 AA-AAAAAGAAGAAA
62715 AAA
1 AAA
62718 GGAAAAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 1 0.03
15 22 0.76
16 6 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAA
Found at i:62693 original size:19 final size:21
Alignment explanation
Indices: 62671--62723 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
62661 AGCAGGCCCA
*
62671 AAAAAAG-AGAGAAAAA-AAG
1 AAAAAAGAAAAGAAAAAGAAG
62690 AAAAAAGAAAAAGAAAAAGAAG
1 AAAAAAG-AAAAGAAAAAGAAG
62712 AAAAAAGGAAAA
1 AAAAAA-GAAAA
62724 ATTGTTCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.24
21 8 0.28
22 13 0.45
23 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAGAAAAAGAAG
Found at i:62695 original size:7 final size:7
Alignment explanation
Indices: 62683--62724 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 7
62673 AAAAGAGAGA
62683 AAAAAAG
1 AAAAAAG
62690 AAAAAAG
1 AAAAAAG
62697 -AAAAAG
1 AAAAAAG
62703 AAAAAGAAG
1 -AAAA-AAG
62712 AAAAAAGG
1 AAAAAA-G
62720 AAAAA
1 AAAAA
62725 TTGTTCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 6 0.19
7 9 0.29
8 13 0.42
9 3 0.10
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Done.