Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2716

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 868
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:309 original size:20 final size:20

Alignment explanation


    Indices: 284--341  Score: 68
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        274 TTTCCATGCG

                                
        284 ATTCAGCTCACTTGAGCTCA
          1 ATTCAGCTCACTTGAGCTCA

                                  
        304 ATTCAGCTTCCAC--GAGCTCA
          1 ATTCAGC-T-CACTTGAGCTCA

                 *             
        324 ATTCAACTCA-TTGAGCTC
          1 ATTCAGCTCACTTGAGCTC

        342 GTTATTAGCT


Statistics
Matches: 33,  Mismatches: 1, Indels: 9
        0.77            0.02        0.21

Matches are distributed among these distances:
  18    2  0.06
  19    7  0.21
  20   20  0.61
  21    1  0.03
  22    3  0.09

ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29


Consensus pattern (20 bp):   
ATTCAGCTCACTTGAGCTCA
Done.