Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2434

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 567

Length: 946
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33


Found at i:267 original size:37 final size:37

Alignment explanation


    Indices: 211--289  Score: 122
    Period size: 37  Copynumber: 2.1  Consensus size: 37

        201 CCGAGCTCTA

                      *           *    *         
        211 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
          1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT

                          *                      
        248 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
          1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT

                 
        285 AAGAC
          1 AAGAC

        290 TTCGTAATAA


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25


Consensus pattern (37 bp):   
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.