Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2406

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 573

Length: 956
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:617 original size:26 final size:26

Alignment explanation


    Indices: 584--637  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        574 TAATTGACTG

                                      
        584 AATCCACTGTGCGGCGGTCGGCGTGA
          1 AATCCACTGTGCGGCGGTCGGCGTGA

                                      
        610 AATCCACTGTGCGGCGGTCGGCGTGA
          1 AATCCACTGTGCGGCGGTCGGCGTGA

              
        636 AA
          1 AA

        638 CGCATAACGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.19, C:0.26, G:0.37, T:0.19


Consensus pattern (26 bp):   
AATCCACTGTGCGGCGGTCGGCGTGA
Done.