genome.fa.s288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold527
Parameters: 2 7 7 80 10 50 1000
Length:  208118

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8449--8498	27	1.9	27	88	8	77	58	6	0	36	1.23
8541--8593	26	2.0	26	100	0	106	67	3	7	20	1.31
8692--8766	3	24.3	3	74	15	64	58	2	6	32	1.38
10312--10371	26	2.4	25	81	13	70	48	1	10	40	1.47
10376--10462	46	1.9	45	81	9	106	43	4	14	36	1.67
10539--10585	23	2.0	25	83	8	62	53	2	8	36	1.44
14749--14808	20	3.0	20	76	9	77	38	3	3	55	1.33
14749--14832	40	2.1	40	84	8	109	40	2	4	52	1.35
18234--18283	25	2.0	25	88	7	75	56	10	32	2	1.44
19887--19923	18	2.1	18	95	5	67	45	13	0	40	1.43
20184--20219	18	2.0	18	88	0	54	27	22	8	41	1.82
22830--22868	20	1.9	21	89	5	62	61	7	5	25	1.44
23358--23399	21	1.9	22	85	9	59	42	2	0	54	1.13
31219--31292	24	3.1	24	73	7	69	24	10	9	55	1.64
31218--31292	25	3.1	25	69	7	64	24	10	9	56	1.63
34054--34400	162	2.1	162	95	0	622	25	21	17	35	1.95
39656--39729	37	2.0	37	82	10	89	33	9	4	52	1.53
46498--46547	25	2.0	24	81	11	57	22	0	8	70	1.13
47728--47764	17	2.1	18	90	5	58	45	16	5	32	1.70
67487--67687	43	4.7	43	82	3	199	29	31	17	21	1.96
67485--67687	86	2.4	86	84	3	248	30	31	17	21	1.96
81630--81691	26	2.4	26	97	0	115	37	12	27	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83363--83413	25	2.1	24	89	7	77	37	7	5	49	1.56
86146--86212	34	1.9	35	84	3	91	34	8	11	44	1.73
90378--90418	21	1.9	22	90	5	66	39	39	2	19	1.65
98464--98497	13	2.5	14	90	4	52	64	8	0	26	1.22
106941--107233	162	1.8	162	88	0	451	26	18	16	38	1.92
108353--108852	162	3.1	162	86	0	660	29	19	17	35	1.94
110568--110717	42	3.5	43	80	6	153	26	17	24	31	1.97
110929--111195	133	2.0	133	85	8	364	27	10	18	43	1.82
111743--111793	15	3.3	15	76	10	57	33	0	0	66	0.92
111743--111793	17	3.1	17	80	5	61	33	0	0	66	0.92
111967--112007	21	2.0	21	95	0	73	46	12	12	29	1.77
114006--114073	3	22.7	3	100	0	136	66	0	0	33	0.92
114158--114187	8	3.8	8	95	0	51	86	0	3	10	0.67
114205--114249	17	2.7	16	82	6	54	64	2	8	24	1.34
115583--116173	133	4.4	132	77	7	523	28	18	18	35	1.94
115556--116171	45	13.9	45	75	4	419	28	18	18	34	1.95
115570--116172	44	13.6	44	77	5	469	28	18	18	34	1.95
119868--119946	27	2.9	27	94	0	140	31	1	20	46	1.58
120043--120256	111	1.9	110	88	0	320	23	14	28	32	1.94
120746--120775	15	2.0	15	100	0	60	20	20	13	46	1.83
122582--122661	16	5.3	16	70	11	53	36	13	1	48	1.51
126596--126648	8	6.4	8	79	16	63	77	11	0	11	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126594--126648	26	2.1	27	90	10	87	78	10	0	10	0.98
126598--126656	15	3.7	15	82	14	66	74	11	1	11	1.15
129063--129742	88	7.8	88	95	0	1184	27	23	23	25	2.00
129063--129742	175	3.9	176	94	0	1184	27	23	23	25	2.00
129063--129742	263	2.6	262	94	0	1207	27	23	23	25	2.00
129954--130716	50	15.3	50	71	8	358	32	23	20	23	1.98
129954--130812	100	8.6	99	85	4	842	32	23	20	23	1.98
131472--132023	132	4.2	132	86	1	748	31	18	23	27	1.97
133546--133625	16	5.3	16	70	11	53	36	13	1	48	1.51
136346--136556	46	4.5	45	72	13	126	27	13	26	32	1.94
139054--139353	151	2.0	150	92	0	492	25	16	31	27	1.97
144707--145536	414	2.0	415	98	0	1610	37	17	11	33	1.85
147425--147470	23	2.0	23	95	0	83	43	10	8	36	1.71
147561--147591	2	15.5	2	100	0	62	51	0	0	48	1.00
149177--149515	165	2.1	163	94	1	588	28	18	17	36	1.93
152363--152395	15	2.3	15	89	5	50	66	0	0	33	0.92
152425--152467	18	2.4	18	84	7	52	41	41	2	13	1.57
152569--152628	18	3.3	18	85	0	84	25	10	21	43	1.83
152569--152628	9	6.7	9	80	0	75	25	10	21	43	1.83
154830--154879	25	2.0	25	88	7	75	24	26	22	28	1.99
165475--165563	41	2.2	41	95	0	160	44	17	6	30	1.75
166681--167027	162	2.1	162	90	0	550	28	18	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167533--167571	3	13.0	3	100	0	78	33	0	0	66	0.92
168198--168234	18	2.1	18	89	0	56	29	8	13	48	1.71
187895--188060	66	2.5	65	81	4	199	43	17	24	13	1.85
188037--188081	21	2.1	21	87	0	63	40	15	40	4	1.67
188085--188149	21	3.1	21	82	8	87	33	15	44	6	1.71
188476--188845	43	8.6	43	73	4	255	25	20	28	25	1.99
188476--188757	86	3.3	86	82	4	300	25	19	29	25	1.98
189911--189936	13	2.0	13	100	0	52	23	15	15	46	1.83
190303--190337	18	2.1	18	89	10	56	20	28	17	34	1.95
192720--192753	15	2.3	15	94	0	59	20	0	0	79	0.73
194810--194855	20	2.3	20	82	10	58	28	0	4	67	1.10
198385--198428	7	6.3	7	91	0	61	38	6	29	25	1.81
198404--198625	50	4.4	50	93	0	381	33	13	22	29	1.93
199416--199460	18	2.7	18	80	13	60	40	13	4	42	1.64
199416--199452	17	2.1	18	90	5	58	45	16	5	32	1.70
202303--202356	3	17.3	3	84	7	72	33	1	0	64	1.04
202303--202356	22	2.5	22	87	6	83	33	1	0	64	1.04
202306--202354	25	2.0	25	92	8	82	32	2	0	65	1.04
203854--203903	21	2.3	22	75	3	57	56	2	0	42	1.11
204224--204254	2	15.5	2	100	0	62	51	0	0	48	1.00
208004--208038	17	2.1	17	94	0	61	34	8	5	51	1.56

Tables:   1

The End!