Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold305
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 679795
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 27416 characters in sequence are not A, C, G, or T
File 2 of 3
Found at i:298300 original size:22 final size:23
Alignment explanation
Indices: 298261--298307 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
298251 TTCATGAGCA
* *
298261 TTCTTTTATTTCTTTTCTTTTAT
1 TTCTTTTACTTCTCTTCTTTTAT
298284 TTCTTTT-CTTCTCTTCTTTTAT
1 TTCTTTTACTTCTCTTCTTTTAT
298306 TT
1 TT
298308 GTATTTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (23 bp):
TTCTTTTACTTCTCTTCTTTTAT
Found at i:298790 original size:14 final size:13
Alignment explanation
Indices: 298752--298786 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
298742 AGGAAATTCC
298752 ATTAGGTTAATTTA
1 ATTA-GTTAATTTA
298766 AGTTAGTTAATTTA
1 A-TTAGTTAATTTA
298780 ATTAGTT
1 ATTAGTT
298787 TAATAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 11 0.55
15 3 0.15
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (13 bp):
ATTAGTTAATTTA
Found at i:299282 original size:45 final size:45
Alignment explanation
Indices: 299222--299425 Score: 174
Period size: 45 Copynumber: 4.5 Consensus size: 45
299212 CCATGAAGTT
* * * * *
299222 TTTTCTCTGAGTCCACATGTACGAGTCCGCCATATAAATGAATCA
1 TTTTCTATGAATCCACATGTATGAATCCGCCATATATATGAATCA
* * * *
299267 TTTTCTATGAATCCACATGTATGAGTTCACCATATATGTGAATCA
1 TTTTCTATGAATCCACATGTATGAATCCGCCATATATATGAATCA
* *** * ** * *
299312 ATTTCTATGAATTTGCATATATGAATTTGCTATATATATGAATAA
1 TTTTCTATGAATCCACATGTATGAATCCGCCATATATATGAATCA
* * * * * *
299357 TTTTCTATGAGTTCACATGTATGAATCTGCCATGTCTATGAATCT
1 TTTTCTATGAATCCACATGTATGAATCCGCCATATATATGAATCA
* *
299402 TTTTCTGTGAATCCGCATGTATGA
1 TTTTCTATGAATCCACATGTATGA
299426 GCCCATTATA
Statistics
Matches: 126, Mismatches: 33, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 126 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (45 bp):
TTTTCTATGAATCCACATGTATGAATCCGCCATATATATGAATCA
Found at i:299334 original size:14 final size:15
Alignment explanation
Indices: 299317--299348 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
299307 AATCAATTTC
299317 TATGAATTTGC-ATA
1 TATGAATTTGCTATA
299331 TATGAATTTGCTATA
1 TATGAATTTGCTATA
299346 TAT
1 TAT
299349 ATGAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (15 bp):
TATGAATTTGCTATA
Found at i:299425 original size:90 final size:90
Alignment explanation
Indices: 299253--299425 Score: 195
Period size: 90 Copynumber: 1.9 Consensus size: 90
299243 CGAGTCCGCC
* * *
299253 ATATAAATGAATCATTTTCTATGAATCCACATGTATGAGTTCACCATATATGTGAATCAATTTCT
1 ATATAAATGAATAATTTTCTATGAATCCACATGTATGAATTCACCATATATATGAATCAATTTCT
**
299318 ATGAATTTGCATATATGAATTTGCT
66 ATGAATCCGCATATATGAATTTGCT
* * * * * * **
299343 ATATATATGAATAATTTTCTATGAGTTCACATGTATGAA-TCTGCCATGTCTATGAATCTTTTTC
1 ATATAAATGAATAATTTTCTATGAATCCACATGTATGAATTC-ACCATATATATGAATCAATTTC
* *
299407 TGTGAATCCGCATGTATGA
65 TATGAATCCGCATATATGA
299426 GCCCATTATA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 2 0.03
90 65 0.97
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (90 bp):
ATATAAATGAATAATTTTCTATGAATCCACATGTATGAATTCACCATATATATGAATCAATTTCT
ATGAATCCGCATATATGAATTTGCT
Found at i:316654 original size:33 final size:33
Alignment explanation
Indices: 316604--316861 Score: 110
Period size: 33 Copynumber: 7.6 Consensus size: 33
316594 CATATAAAGG
**
316604 GGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
316637 GGTTGCTAAGTGTTGATTCCACCGCATCTGAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-AT-T--CAT-T---GGT
* *
316679 GGTTTCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
**
316706 GGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
316739 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T----GGT
*
316782 GGTTGCTAAGTGTTGATTCTCCCG----A--GG-
1 GGTTGCTAAGTGCTGATTC-CCCGATTCATTGGT
* * *
316809 AGTTGCTAAGTGCTAATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
316842 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
316862 ACCGCATCTG
Statistics
Matches: 168, Mismatches: 24, Indels: 66
0.65 0.09 0.26
Matches are distributed among these distances:
26 3 0.02
27 35 0.21
28 4 0.02
30 1 0.01
31 2 0.01
32 4 0.02
33 54 0.32
34 6 0.04
35 4 0.02
36 1 0.01
37 2 0.01
38 4 0.02
39 2 0.01
41 2 0.01
42 20 0.12
43 23 0.14
44 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.34
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:316725 original size:102 final size:102
Alignment explanation
Indices: 316600--316906 Score: 488
Period size: 102 Copynumber: 3.0 Consensus size: 102
316590 ATTGCATATA
*
316600 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
*
316665 TGAAATGTGAAGGGGGTTTCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
* *
316702 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
* * *
316767 TTAAATGTGAAAGGGGGTTGCTAAGTGTTGATTCTCCC
66 TGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
* * ** * *
316805 GAGGAGTTGCTAAGTGCTAATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
316870 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
316907 NNNNNNNNNN
Statistics
Matches: 186, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
102 96 0.52
103 90 0.48
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.33
Consensus pattern (102 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:316852 original size:103 final size:102
Alignment explanation
Indices: 316613--316906 Score: 462
Period size: 103 Copynumber: 2.9 Consensus size: 102
316603 GGGTTGCTGT
*
316613 GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTCCACCGCATCTGAAATGTGAAGG
1 GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGG
* * **
316678 GGGTTTCTAAGTGCTGATTCCCCCAAGGGGTTGCTGT
66 GGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAA
* * *
316715 GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAG
1 GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTG-AAG
* * *
316780 GGGGTTGCTAAGTGTTGATTCTCCCGAGGAGTTGCTAA
65 GGGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAA
* *
316818 GTGCTAATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGG
1 GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGG
316883 GGGTTGCTAAGTGCTGATTCCCCC
66 GGGTTGCTAAGTGCTGATTCCCCC
316907 NNNNNNNNNN
Statistics
Matches: 173, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
102 83 0.48
103 90 0.52
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (102 bp):
GTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATCTGAAATGTGAAGG
GGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAA
Found at i:319944 original size:92 final size:92
Alignment explanation
Indices: 319833--320010 Score: 311
Period size: 92 Copynumber: 1.9 Consensus size: 92
319823 AGTACTTTAT
* * *
319833 ATTGATATATTGTACATCTTGAGACATAGGATATTGATCTAAGTTAAATTATGAAATTTCTATGA
1 ATTGATATATTGTAAATCTTGAGACATAGGATATTGACCTAAGTTAAATTATGAAATTTCGATGA
319898 GTTTATAAAGTTGATTAATTATTGTGA
66 GTTTATAAAGTTGATTAATTATTGTGA
*
319925 ATTGATATATTGTAAATCTTGAGACATAGGATATTGACCTAAGTTAAATTATGAAATTTCGATTA
1 ATTGATATATTGTAAATCTTGAGACATAGGATATTGACCTAAGTTAAATTATGAAATTTCGATGA
*
319990 GTTTATAAAGTTTATTAATTA
66 GTTTATAAAGTTGATTAATTA
320011 GCCTTCACAA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (92 bp):
ATTGATATATTGTAAATCTTGAGACATAGGATATTGACCTAAGTTAAATTATGAAATTTCGATGA
GTTTATAAAGTTGATTAATTATTGTGA
Found at i:330036 original size:14 final size:14
Alignment explanation
Indices: 330019--330053 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
330009 ATTTTTGTCT
330019 TTAAAATGATGAAA
1 TTAAAATGATGAAA
*
330033 TTAAAATGGTGAAA
1 TTAAAATGATGAAA
330047 TTAAAAT
1 TTAAAAT
330054 CATCAAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.31
Consensus pattern (14 bp):
TTAAAATGATGAAA
Found at i:330688 original size:14 final size:14
Alignment explanation
Indices: 330669--330696 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
330659 TTCCAATAAA
330669 TAGTATTTGATTTT
1 TAGTATTTGATTTT
330683 TAGTATTTGATTTT
1 TAGTATTTGATTTT
330697 CCAACAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (14 bp):
TAGTATTTGATTTT
Found at i:331103 original size:17 final size:17
Alignment explanation
Indices: 331081--331113 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
331071 TTATAAGTCT
331081 AATAAATCTT-TTTATTA
1 AATAAAT-TTATTTATTA
331098 AATAAATTTATTTATT
1 AATAAATTTATTTATT
331114 GAATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATAAATTTATTTATTA
Found at i:338183 original size:154 final size:154
Alignment explanation
Indices: 337903--338369 Score: 808
Period size: 154 Copynumber: 3.0 Consensus size: 154
337893 GTTTAAATAA
* * *
337903 TTAATTTCAGATTATGCAATTAAGACAATTCACTTTGCTAATATTGATGAGTTTATATCTCAGTC
1 TTAATTTCAGATCATGCAACTAAGACAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTC
* *
337968 ATTTATTGATTGAGTTTGAAATTTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
66 TTTTATTGATTGAGTTTGAAAATTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
*
338033 AAATTATTGATTGAACGCCTCTGT
131 AAATTATTGATTGAACGCCTCTGG
*
338057 TTAATTTCAGATCATGCAACTAAGATAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTC
1 TTAATTTCAGATCATGCAACTAAGACAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTC
** *
338122 TTTTATTGATTGAGTTTGAAAAACTTTTGTGAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
66 TTTTATTGATTGAGTTTGAAAATTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
338187 AAATTATTGATTGAACGCCTCTGG
131 AAATTATTGATTGAACGCCTCTGG
* *
338211 TTAATTTCAGATCATGCAACTAAGACAATTCATTTTACTAATATTGATGGGTTTATATCTCAGTC
1 TTAATTTCAGATCATGCAACTAAGACAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTC
338276 TTTTATTGATTGAGTTTGAAAATTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
66 TTTTATTGATTGAGTTTGAAAATTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
* *
338341 AAATTATTGATTGAACACTTCTGG
131 AAATTATTGATTGAACGCCTCTGG
338365 TTAAT
1 TTAAT
338370 GTCAAAACCA
Statistics
Matches: 295, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
154 295 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (154 bp):
TTAATTTCAGATCATGCAACTAAGACAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTC
TTTTATTGATTGAGTTTGAAAATTTTTTGTAAAAGTTTGTTATTTATGCGCATAATAGTTTAGAG
AAATTATTGATTGAACGCCTCTGG
Found at i:339466 original size:85 final size:85
Alignment explanation
Indices: 339338--339505 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
339328 TTATATATAA
* * * * * ** *
339338 AAACGCCGCTATAGAACATGGCCTTTAGCGGCGCTTTTTCCACAAATGCTGCTATAGAACATGAC
1 AAACGCCGCTATAGAACAAGACATTTAGCGGCGATTTTTCCACAAACGCCACTATAGAACAAGAC
*
339403 TTTTAGCGGCGCTTTTCCAC
66 CTTTAGCGGCGCTTTTCCAC
* *
339423 AAACGCCGCTATAGAATAAGACATTTAGTGGC-ATTTTTCCCACAAACGCCACTATAGAACAAGA
1 AAACGCCGCTATAGAACAAGACATTTAGCGGCGATTTTT-CCACAAACGCCACTATAGAACAAGA
339487 CCTTTAGCGGCGCTTTTCC
65 CCTTTAGCGGCGCTTTTCC
339506 CNNNNNNNNN
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 5 0.07
85 66 0.93
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (85 bp):
AAACGCCGCTATAGAACAAGACATTTAGCGGCGATTTTTCCACAAACGCCACTATAGAACAAGAC
CTTTAGCGGCGCTTTTCCAC
Found at i:339504 original size:43 final size:43
Alignment explanation
Indices: 339338--339506 Score: 214
Period size: 43 Copynumber: 4.0 Consensus size: 43
339328 TTATATATAA
* * *
339338 AAACGCCGCTATAGAACATGGCCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
339381 AAATGCTGCTATAGAACATGACTTTTAGCGGCGCTTTT-CCAC
1 AAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
* * * **
339423 AAACGCCGCTATAGAATAAGACATTTAGTGGCATTTTTCCCAC
1 AAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
*
339466 AAACGCCACTATAGAACAAGACCTTTAGCGGCGCTTTTCCC
1 AAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTTTCCC
339507 NNNNNNNNNN
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 34 0.32
43 73 0.68
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:339726 original size:21 final size:21
Alignment explanation
Indices: 339701--339741 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
339691 AATCTAAACC
339701 CTTAA-CCCCTAACCCCTAAAA
1 CTTAAGCCCC-AACCCCTAAAA
*
339722 CTTAAGCCCCAACCCTTAAA
1 CTTAAGCCCCAACCCCTAAA
339742 CCATAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.37, C:0.41, G:0.02, T:0.20
Consensus pattern (21 bp):
CTTAAGCCCCAACCCCTAAAA
Found at i:339750 original size:7 final size:7
Alignment explanation
Indices: 339738--339785 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
339728 CCCCAACCCT
339738 TAAACCA
1 TAAACCA
339745 TAAACCA
1 TAAACCA
*
339752 TAATCCA
1 TAAACCA
* *
339759 TAATCCC
1 TAAACCA
339766 TAAACCCA
1 TAAA-CCA
*
339774 TAATCCA
1 TAAACCA
339781 TAAAC
1 TAAAC
339786 TTTAAAATAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 29 0.85
8 5 0.15
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:339777 original size:15 final size:15
Alignment explanation
Indices: 339738--339785 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
339728 CCCCAACCCT
*
339738 TAAA-CCATAAACCA
1 TAAACCCATAATCCA
* *
339752 T-AATCCATAATCCC
1 TAAACCCATAATCCA
339766 TAAACCCATAATCCA
1 TAAACCCATAATCCA
339781 TAAAC
1 TAAAC
339786 TTTAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.07
14 10 0.36
15 16 0.57
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:339791 original size:22 final size:21
Alignment explanation
Indices: 339738--339785 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
339728 CCCCAACCCT
*
339738 TAAACCATAAACCATAATCCA
1 TAAACCCTAAACCATAATCCA
*
339759 TAATCCCTAAACCCATAATCCA
1 TAAACCCTAAA-CCATAATCCA
339781 TAAAC
1 TAAAC
339786 TTTAAAATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACCCTAAACCATAATCCA
Found at i:339854 original size:14 final size:14
Alignment explanation
Indices: 339810--339854 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
339800 TTCTAAACCT
339810 TAAACCCTAAACTA
1 TAAACCCTAAACTA
*
339824 TATACCCTAAA-TCA
1 TAAACCCTAAACT-A
*
339838 TAAACCTTAAACTA
1 TAAACCCTAAACTA
339852 TAA
1 TAA
339855 TGATAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:340437 original size:115 final size:113
Alignment explanation
Indices: 340150--340449 Score: 372
Period size: 112 Copynumber: 2.6 Consensus size: 113
340140 AGAAAAAATG
* * * *
340150 TTTTTTGCAACATTTTTTATAAAG-AGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAG
1 TTTTTTGCAGCATTTTTCAAAAAGCA-CCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAG
* * *
340214 AGCCACTATTGCCATTAAAGCTCAACATAAAACAACGTTGTGCTTAACT
65 AGCCGCTAATGCCACTAAAGCTCAACATAAAACAACGTTGTGCTTAACT
* * * * * * *
340263 TTTTTTGCGGCGTTTTACAAAATGCACTGCTAATGCTCG-TCTATAGCGACGTTTTTCAAAAAGC
1 TTTTTTGCAGCATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGA
* *
340327 GCCGCTAATGCCACTGAAGTTCAACATAAAACAACGGCGTTGTGCTTAA-T
66 GCCGCTAATGCCACTAAAGCTCAACATAAAACAA---CGTTGTGCTTAACT
* * *
340377 TTTTTTGCAGCATTTTTCAAAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAGT
1 TTTTTTGCAGCATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGA
340442 GCCGCTAA
66 GCCGCTAA
340450 AAATACCGCT
Statistics
Matches: 157, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
112 52 0.33
113 28 0.18
114 35 0.22
115 42 0.27
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (113 bp):
TTTTTTGCAGCATTTTTCAAAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGA
GCCGCTAATGCCACTAAAGCTCAACATAAAACAACGTTGTGCTTAACT
Found at i:342024 original size:15 final size:15
Alignment explanation
Indices: 341988--342024 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
341978 TATATTTTGA
341988 ATTTTTAGAATTTTT
1 ATTTTTAGAATTTTT
342003 -TTATTTAGAATTTTT
1 ATT-TTTAGAATTTTT
342018 ATTTTTA
1 ATTTTTA
342025 AAAATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.10
15 16 0.80
16 2 0.10
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (15 bp):
ATTTTTAGAATTTTT
Found at i:342088 original size:20 final size:20
Alignment explanation
Indices: 342040--342100 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
342030 AATTTAACAT
*
342040 AATTTTTA-ATATTTTTAAG
1 AATTTTTATTTATTTTTAAG
* **
342059 AGTTCATATTTATTTTTAAG
1 AATTTTTATTTATTTTTAAG
342079 AATTTTTATTT-TTTTT-AG
1 AATTTTTATTTATTTTTAAG
342097 AATT
1 AATT
342101 ATTGTTAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 6 0.18
19 10 0.29
20 18 0.53
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.61
Consensus pattern (20 bp):
AATTTTTATTTATTTTTAAG
Found at i:343441 original size:37 final size:37
Alignment explanation
Indices: 343391--343467 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
343381 CTAAATTTAA
343391 ATTATTTATTAAACAAACGAATCTAATTTTCTTCCCT
1 ATTATTTATTAAACAAACGAATCTAATTTTCTTCCCT
343428 ATTATTTATTAAACAAACGAATCTAATTTTCTTCCCT
1 ATTATTTATTAAACAAACGAATCTAATTTTCTTCCCT
343465 ATT
1 ATT
343468 GTTTTAGACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.44
Consensus pattern (37 bp):
ATTATTTATTAAACAAACGAATCTAATTTTCTTCCCT
Found at i:352860 original size:42 final size:42
Alignment explanation
Indices: 352801--352970 Score: 340
Period size: 42 Copynumber: 4.0 Consensus size: 42
352791 AGTTAGACAC
352801 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
1 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
352843 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
1 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
352885 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
1 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
352927 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
1 GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
352969 GA
1 GA
352971 GGTATCAAAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 128 1.00
ACGTcount: A:0.22, C:0.05, G:0.29, T:0.45
Consensus pattern (42 bp):
GATATGAGTGTATTGGTTCTAAAGTCATTGGTTTTGGGATTT
Found at i:354422 original size:14 final size:14
Alignment explanation
Indices: 354403--354431 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
354393 AAAAGTAGAG
354403 AAAAAGAAAAACAA
1 AAAAAGAAAAACAA
354417 AAAAAGAAAAACAA
1 AAAAAGAAAAACAA
354431 A
1 A
354432 GATGTACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAACAA
Found at i:354573 original size:18 final size:17
Alignment explanation
Indices: 354538--354573 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
354528 CTTTTTTCCA
*
354538 TTTTCGATTGTGTTCTT
1 TTTTCGATTGTCTTCTT
354555 TTTTCGATTGCTCTTCTT
1 TTTTCGATTG-TCTTCTT
354573 T
1 T
354574 CATTTTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.06, C:0.17, G:0.14, T:0.64
Consensus pattern (17 bp):
TTTTCGATTGTCTTCTT
Found at i:359377 original size:7 final size:7
Alignment explanation
Indices: 359365--359425 Score: 85
Period size: 7 Copynumber: 9.3 Consensus size: 7
359355 ATGAGCTCAA
359365 AAAAATC
1 AAAAATC
359372 AAAAATC
1 AAAAATC
359379 AAAAATC
1 AAAAATC
359386 AAAAATC
1 AAAAATC
359393 AAAAA-C
1 AAAAATC
359399 AAAAA-C
1 AAAAATC
*
359405 AAAAA-G
1 AAAAATC
359411 AAAAATC
1 AAAAATC
359418 -AAAATC
1 AAAAATC
359424 AA
1 AA
359426 GGTCAAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 23 0.46
7 27 0.54
ACGTcount: A:0.75, C:0.13, G:0.02, T:0.10
Consensus pattern (7 bp):
AAAAATC
Found at i:359382 original size:6 final size:6
Alignment explanation
Indices: 359366--359440 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
359356 TGAGCTCAAA
* * **
359366 AAAATC AAAAATC AAAAATC AAAAATC AAAAAC AAAAAC AAAAAGA AAAATC
1 AAAATC -AAAATC -AAAATC -AAAATC AAAATC AAAATC -AAAATC AAAATC
** *
359418 AAAATC AAGGTC AAAATG AAAAT
1 AAAATC AAAATC AAAATC AAAAT
359441 GAGAGAAAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
6 33 0.58
7 24 0.42
ACGTcount: A:0.71, C:0.12, G:0.05, T:0.12
Consensus pattern (6 bp):
AAAATC
Found at i:361903 original size:44 final size:43
Alignment explanation
Indices: 361840--362037 Score: 161
Period size: 44 Copynumber: 4.6 Consensus size: 43
361830 GAAAATGACG
*
361840 AATCTTATCTCTCTGAGATTACAGTAGAGCAGATTGAAGCTAGA
1 AATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGC-AGA
* * *
361884 AATCTTATCTCCCTGAGATTACAGTGGAGCATATTGAAGCCGA
1 AATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAGA
* * * * * **
361927 TAATCCTATCTCCTTGA-AGTTACAGTGGAGCGGATTAAAATA-A
1 -AATCTTATCTCCCTGAGA-TTACAGTAGAGCAGATTGAAGCAGA
* * * * * *
361970 AGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAG-
1 A--ATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAGA
*
362014 -GTCTTATCTCCCTGAGATTACAGT
1 AATCTTATCTCCCTGAGATTACAGT
362038 GGAGTAGACC
Statistics
Matches: 122, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
41 21 0.17
42 1 0.01
43 4 0.03
44 95 0.78
45 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAGA
Found at i:362057 original size:233 final size:233
Alignment explanation
Indices: 361650--362521 Score: 1352
Period size: 233 Copynumber: 3.7 Consensus size: 233
361640 GGAAGATGAC
* * *
361650 AAATCTTATCTCCCT-AAAGTTACAGTGGAGCAGGTTGAAGCCGATAATCCTATCTCCTTAAAGT
1 AAATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGT
* *
361714 TACAATGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGAATC
65 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATC
**
361779 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCTAATCGAAAATGACGAATC
130 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCTAATCGAAAATGGTGAATC
* *
361844 TTATCTCTCTGAGATTACAGTAGAGCAGATTGAAGCTAG
195 TTATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAAG
*
361883 AAATCTTATCTCCCTGAGATTACAGTGGAGCATATTGAAGCCGATAATCCTATCTCCTTGAAGTT
1 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTT
361948 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
* **
362013 GGTCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAGAATTCCTAATAAAAAATGGTGAATCT
131 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCTAATCGAAAATGGTGAATCT
* * * *
362078 TATCTCCCTAAGGTTATAGTAGAGCAGATTGAAGCCAG
196 TATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAAG
* * * *
362116 AAATATTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTGATAATCCTATCCCCTTGAAGTT
1 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTT
* *
362181 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAATTACAGTAGGGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
* ** *
362246 GGTTTTATCTCCCTGAGATTACAGTGGAATAGACTGAAGAACTCCTAATCGAAAATGGTGAATCT
131 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCTAATCGAAAATGGTGAATCT
* *
362311 TATCTCCCTGA-AGTTACAGTGGAGCAGATTGAAGCAAA
196 TATCTCCCTGAGA-TTACAGTAGAGCAGATTGAAGCAAG
* * * *
362349 AAATCTTATCTCCTTGAGATTATAGTGGAGCAGATTGAAGTCGATAATCTTATCTCCTTGAAGTT
1 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTT
* * *
362414 ACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
* * * *
362479 GGTCTTGTCTCACTGAGATTACGGTGGAATGGACCAAAGAATT
131 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
362522 ACAGATCTTA
Statistics
Matches: 582, Mismatches: 55, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
233 580 1.00
234 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (233 bp):
AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCTTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTCCTAATCGAAAATGGTGAATCT
TATCTCCCTGAGATTACAGTAGAGCAGATTGAAGCAAG
Found at i:362147 original size:44 final size:44
Alignment explanation
Indices: 362090--362195 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 44
362080 TCTCCCTAAG
* * * *
362090 GTTATAGTAGAGCAGATTGAAGCCAGA-AATATTATCTCCTTG-A
1 GTTACAGTGGAGCAGATTGAAG-CAGATAATACTATCCCCTTGAA
* *
362133 GATTACAGTGGAGCAGATTGAAGCTGATAATCCTATCCCCTTGAA
1 G-TTACAGTGGAGCAGATTGAAGCAGATAATACTATCCCCTTGAA
*
362178 GTTACAGTGGAGCGGATT
1 GTTACAGTGGAGCAGATT
362196 AAAATAAAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
43 4 0.08
44 47 0.89
45 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
GTTACAGTGGAGCAGATTGAAGCAGATAATACTATCCCCTTGAA
Found at i:362376 original size:44 final size:44
Alignment explanation
Indices: 362306--362473 Score: 182
Period size: 44 Copynumber: 3.8 Consensus size: 44
362296 GAAAATGGTG
*
362306 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG-CAAAA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTC-AAA
* * *
362350 AATCTTATCTCCTTG-AGATTATAGTGGAGCAGATTGAAGTCGAT
1 AATCTTATCTCCTTGAAG-TTACAGTGGAGCAGATTGAAGTCAAA
* * *
362394 AATCTTATCTCCTTGAAGTTACAGTGGAGCGGATTAAAAT-AAA
1 AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTCAAA
* * *
362437 TGATCTTATCT-CTCTGAAGTTACAGTAGAGTAGATTG
1 -AATCTTATCTCCT-TGAAGTTACAGTGGAGCAGATTG
362474 CATCAGGTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
43 5 0.05
44 96 0.92
45 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTCAAA
Found at i:362472 original size:88 final size:88
Alignment explanation
Indices: 362306--362473 Score: 214
Period size: 88 Copynumber: 1.9 Consensus size: 88
362296 GAAAATGGTG
* *
362306 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCAAAAAATCTTATCTCCTTGAGATTA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAAAATCTTATCTCCTTGAGATTA
* *
362371 TAGTGGAGCAGATTGAAGTCGAT
66 CAGTAGAGCAGATTGAAGTCGAT
* * * **
362394 AATCTTATCTCCTTGAAGTTACAGTGGAGCGGATTAAAATAAATGATCTTATCT-CTCTGA-AGT
1 AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAAAATCTTATCTCCT-TGAGA-T
*
362457 TACAGTAGAGTAGATTG
64 TACAGTAGAGCAGATTG
362474 CATCAGGTCT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 3 0.04
88 65 0.96
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.32
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAAAATCTTATCTCCTTGAGATTA
CAGTAGAGCAGATTGAAGTCGAT
Found at i:362699 original size:100 final size:100
Alignment explanation
Indices: 362526--363180 Score: 927
Period size: 100 Copynumber: 6.6 Consensus size: 100
362516 AGAATTACAG
* *
362526 ATCTTACTTCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGA
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
* **
362591 CATTGCAGTTAAAAAGATTAAAGCTATAATGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
* * *
362626 ATCTTA-TTCCCTAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
1 ATCTTACTTCCCT-GGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * * *
362690 ACATTGCAGTTAAAAAGATTGAAGCCACAACAGCGA
65 ACATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
* ** ** * * *
362726 CTCTTACTTTTCAAGCGATGCAGTGGAACAGACTAAAGCCACATCAGTGAATCTTGCTTCCCCGA
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
* * * *
362791 CATTGCAATTAAAAAGATTAAAACCACAGCGGGGA
66 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
* * * *
362826 ATCCTAC-TGCCTGGCAATGCAGTGGAGCAGATTAAATCCACATCGGTGAATCTTGCTTCCCCGA
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
362890 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
* * * * *
362925 ATCTTACCTCCCTGGCGGTGCAATGGAGTAGATTAAAGCCACATCGGTGAATCTTGCTTCCTCGA
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
362990 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
* * *
363025 ATCCTACTGCCCTGGTGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
*
363090 CATTGTAGTTAAAAAGATTAAAGCCATAGCGGCGA
66 CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
** *
363125 ATCTTACTTCTTTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAAACTTG
1 ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTG
363181 ATTAAAGCTA
Statistics
Matches: 489, Mismatches: 63, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
99 90 0.18
100 396 0.81
101 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (100 bp):
ATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGA
Found at i:363081 original size:299 final size:300
Alignment explanation
Indices: 362530--363180 Score: 948
Period size: 299 Copynumber: 2.2 Consensus size: 300
362520 TTACAGATCT
* *
362530 TACTTCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATT
1 TACTGCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATT
* * * *
362595 GCAGTTAAAAAGATTAAAGCTATAATGGCGAATCTTATTCCCTAGGCGGTGCAGTGGAACAGATT
66 GCAGTTAAAAAGATTAAAGCCATAACGGCGAATCTTACTCCCTAGGCGGTGCAATGGAACAGATT
*
362660 AAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAAAGATTGAAGCCACAACAGCG
131 AAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAAAGATTAAAGCCACAACAGCG
* * ***
362725 ACTCTTACTTTTCAAGCGATGCAGTGGAACAGACTAAAGCCACATCAGTGAATCTTGCTTCCCCG
196 AATCCTACTGCCCAAGCGATGCAGTGGAACAGACTAAAGCCACATCAGTGAATCTTGCTTCCCCG
*
362790 ACATTGCAATTAAAAAGATTAAAACCACAGCGGGGAATCC
261 ACATTGCAATTAAAAAGATTAAAACCACAGCGGCGAATCC
* *
362830 TACTGC-CTGGCAATGCAGTGGAGCAGATTAAATCCACATCGGTGAATCTTGCTTCCCCGACATT
1 TACTGCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATT
* **
362894 GCAGTTAAAAAGATTAAAGCCATAGCGGCGAATCTTACCTCCCT-GGCGGTGCAATGGAGTAGAT
66 GCAGTTAAAAAGATTAAAGCCATAACGGCGAATCTTA-CTCCCTAGGCGGTGCAATGGAACAGAT
* * *
362958 TAAAGCCACATCGGTGAATCTTGCTT-CCTCGACATTGCAGTTAAAAAGATTAAAGCCATAGCGG
130 TAAAGCCACATCGGTGAATCTTGCTTCCCT-GACATTGCAGTTAAAAAGATTAAAGCCACAACAG
** * * * *
363022 CGAATCCTACTGCCCTGGTGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
194 CGAATCCTACTGCCCAAGCGATGCAGTGGAACAGACTAAAGCCACATCAGTGAATCTTGCTTCCC
* * * * *
363087 CGACATTGTAGTTAAAAAGATTAAAGCCATAGCGGCGAATCT
259 CGACATTGCAATTAAAAAGATTAAAACCACAGCGGCGAATCC
* * *
363129 TACTTCTTTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAAACTTG
1 TACTGCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTG
363181 ATTAAAGCTA
Statistics
Matches: 311, Mismatches: 37, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
298 3 0.01
299 257 0.83
300 51 0.16
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (300 bp):
TACTGCTCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATT
GCAGTTAAAAAGATTAAAGCCATAACGGCGAATCTTACTCCCTAGGCGGTGCAATGGAACAGATT
AAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAAAGATTAAAGCCACAACAGCG
AATCCTACTGCCCAAGCGATGCAGTGGAACAGACTAAAGCCACATCAGTGAATCTTGCTTCCCCG
ACATTGCAATTAAAAAGATTAAAACCACAGCGGCGAATCC
Found at i:363129 original size:50 final size:50
Alignment explanation
Indices: 362555--363134 Score: 398
Period size: 50 Copynumber: 11.6 Consensus size: 50
362545 GCAGTGGAGC
*
362555 AGATTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * ** ** *
362605 AGATTAAAGCTATAAT-GGCGAATCTT-ATTCCCTAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCA-CATCGGTGAATCTTGCTTCCC-CGACATTGCAGTTAAAA
*
362655 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * ** * ** *
362705 AGATTGAAGCCACAACAGCGACTCTTACTT-TTCAAGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGA-C-ATTGCAGTTAAAA
* * *
362755 AGACTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * * ** **
362805 AGATTAAAACCACAGCGGGGAATCCTAC-TGCCTGGCAATGCAGTGGAGC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
362854 AGATTAAATCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * ** * ** **
362904 AGATTAAAGCCATAGCGGCGAATCTTACCTCCCTGGCGGTGCAATGGAGT
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
362954 AGATTAAAGCCACATCGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * ** ** **
363004 AGATTAAAGCCATAGCGGCGAATCCTACTGCCCTGGTGA-TGCAGTGGAGC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCC-CGACATTGCAGTTAAAA
*
363054 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * *
363104 AGATTAAAGCCATAGCGGCGAATCTTACTTC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTC
363135 TTTGGCGATG
Statistics
Matches: 379, Mismatches: 140, Indels: 22
0.70 0.26 0.04
Matches are distributed among these distances:
49 46 0.12
50 321 0.85
51 12 0.03
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:363272 original size:50 final size:50
Alignment explanation
Indices: 363180--363686 Score: 301
Period size: 50 Copynumber: 10.1 Consensus size: 50
363170 GGTGAAACTT
* * * * *
363180 GATTAAAGCTAAAACAGCGAATCTT-ACTCCCCAGGCGA-TGCAGTGGAATA
1 GATTAAAGCTACAACAGTGAATCTTGCCT-CCCAGAC-ATTGCAGTGGAAAA
* * * * * **
363230 GATTAAAGCCACATCCGTGAATCTTGCTTCCCCGACATTGCAGTTCAAAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAAAA
** * * * ** *
363280 GATTAAAGCTACAACAACGAATCTTACCTCCAAGGCGGTGCAGTGGAACA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAAAA
* ** * **
363330 GATTAAAGCTACAACGGTGAATCTTGCCTCCTTGACATTGCGGTTAAAAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAAAA
** * * * **
363380 GATTAAAGCTACAGTAATGAATCTTACCTCCCAGGCGGTGCAGTGGAACAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAA-AA
* * * * * **
363431 -ATTAAAGCCACGACGGTGAATCTTG-CTCCCCTGACATTGCGGTTAAAAA
1 GATTAAAGCTACAACAGTGAATCTTGCCT-CCCAGACATTGCAGTGGAAAA
* * * * * * *
363480 GATTAAAGGTACAGCAGTGAATCTTACCTCCAAGGCAGTGCAGTTGAACAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAA-AA
** **
363531 -ATTAAAGCTACAACAGTGAATCTTGCCTCCTTGACATTGC-GATTAAAAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAG-TGGAAAA
* * ** * * * * *
363580 GATTAAAACTACAGCAGCAAATCTTACACTCCCAGGCAGTGTAGT-GAAGCA
1 GATTAAAGCTACAACAGTGAATCTTGC-CTCCCAGACATTGCAGTGGAA-AA
* * * **
363631 GATTAAAGCCACAACAGTGAATCTT-TCTTCCAGACATTGCAGTTAAAAA
1 GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAAAA
363680 GATTAAA
1 GATTAAA
363687 TCCACAATGC
Statistics
Matches: 333, Mismatches: 111, Indels: 27
0.71 0.24 0.06
Matches are distributed among these distances:
49 29 0.09
50 265 0.80
51 38 0.11
52 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (50 bp):
GATTAAAGCTACAACAGTGAATCTTGCCTCCCAGACATTGCAGTGGAAAA
Found at i:363303 original size:175 final size:175
Alignment explanation
Indices: 363021--363355 Score: 463
Period size: 175 Copynumber: 1.9 Consensus size: 175
363011 AGCCATAGCG
* * * * *
363021 GCGAATCCTACTGCCCTGGTGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCC
1 GCGAATCCTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCCGTGAATCTTGCTTCC
* * * ** * ***
363086 CCGACATTGTAGTTAAAAAGATTAAAGCCATAGCGGCGAATCTTACTTCTTTGGCGATGCAGTGG
66 CCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCTTACCTCCAAGGCGATGCAGTGG
* *
363151 AGCAGATTAAAGCCACATCGGTGAAACTTGATTAAAGCTAAAACA
131 AACAGATTAAAGCCACAACGGTGAAACTTGATTAAAGCTAAAACA
* *
363196 GCGAATCTTACTCCCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTCC
1 GCGAATCCTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCCGTGAATCTTGCTTCC
* * *
363261 CCGACATTGCAGTTCAAAAGATTAAAGCTACAACAACGAATCTTACCTCCAAGGCGGTGCAGTGG
66 CCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCTTACCTCCAAGGCGATGCAGTGG
* *
363326 AACAGATTAAAGCTACAACGGTGAATCTTG
131 AACAGATTAAAGCCACAACGGTGAAACTTG
363356 CCTCCTTGAC
Statistics
Matches: 137, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
175 137 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (175 bp):
GCGAATCCTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCCGTGAATCTTGCTTCC
CCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCTTACCTCCAAGGCGATGCAGTGG
AACAGATTAAAGCCACAACGGTGAAACTTGATTAAAGCTAAAACA
Found at i:363353 original size:100 final size:100
Alignment explanation
Indices: 363180--363686 Score: 583
Period size: 100 Copynumber: 5.1 Consensus size: 100
363170 GGTGAAACTT
* * * * *
363180 GATTAAAGCTAAAACAGCGAATCTTA-CTCCCCAGGCGATGCAGTGGAATAGATTAAAGCCACAT
1 GATTAAAGCTACAGCAGCGAATCTTACCT-CCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAA
* * *
363244 CCGTGAATCTTGCTTCCCCGACATTGCAGTTCAAAA
65 CAGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAA
* * * *
363280 GATTAAAGCTACAACAACGAATCTTACCTCCAAGGCGGTGCAGTGGAACAGATTAAAGCTACAAC
1 GATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAAC
* ** *
363345 GGTGAATCTTGCCTCCTTGACATTGCGGTTAAAAA
66 AGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAA
* ** * *
363380 GATTAAAGCTACAGTAATGAATCTTACCTCCCAGGCGGTGCAGTGGAACAAATTAAAGCCACGAC
1 GATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAAC
* *
363445 GGTGAATCTTG-CTCCCCTGACATTGCGGTTAAAAA
66 AGTGAATCTTGCCTCCCC-GACATTGCAGTTAAAAA
* * * * * * *
363480 GATTAAAGGTACAGCAGTGAATCTTACCTCCAAGGCAGTGCAGTTGAACAAATTAAAGCTACAAC
1 GATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAAC
**
363545 AGTGAATCTTGCCTCCTTGACATTGC-GATTAAAAA
66 AGTGAATCTTGCCTCCCCGACATTGCAG-TTAAAAA
* * * *
363580 GATTAAAACTACAGCAGCAAATCTTACACTCCCAGGCAGTGTAGT-GAAGCAGATTAAAGCCACA
1 GATTAAAGCTACAGCAGCGAATCTTAC-CTCCCAGGCGGTGCAGTGGAA-CAGATTAAAGCCACA
* * *
363644 ACAGTGAATCTT-TCTTCCAGACATTGCAGTTAAAAA
64 ACAGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAA
363680 GATTAAA
1 GATTAAA
363687 TCCACAATGC
Statistics
Matches: 355, Mismatches: 45, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
99 5 0.01
100 303 0.85
101 47 0.13
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (100 bp):
GATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAAC
AGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAA
Found at i:363404 original size:275 final size:275
Alignment explanation
Indices: 362921--363455 Score: 671
Period size: 275 Copynumber: 1.9 Consensus size: 275
362911 AGCCATAGCG
* * * *
362921 GCGAATCTTACCTCCCTGGCGGTGCAATGGAGTAGATTAAAGCCACATCGGTGAATCTTGCTTCC
1 GCGAATCTTACCTCCCAGGCGATGCAATGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTCC
* * * ** ** *
362986 TCGACATTGCAGTTAAAAAGATTAAAGCCATAGCGGCGAATCCTACTGCCCTGGTGATGCAGTGG
66 CCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCCTACTGCCAAGGCGATGCAGTGG
* * * *
363051 AGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAAAGATTAAAGCCA
131 AACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAAGATTAAAGCCA
* ** * *** * *
363116 TAGCGGCGAATCTTACTTCTTTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAAACTT
196 CAGCAACGAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCACGA-CGGTGAAACTT
363180 GATTAAAGCTAAAACA
260 GATTAAAGCTAAAACA
*
363196 GCGAATCTTA-CTCCCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTC
1 GCGAATCTTACCT-CCCAGGCGATGCAATGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTC
* * * *
363260 CCCGACATTGCAGTTCAAAAGATTAAAGCTACAACAACGAATCTTACCT-CCAAGGCGGTGCAGT
65 CCCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCCTA-CTGCCAAGGCGATGCAGT
* ** *
363324 GGAACAGATTAAAGCTACAACGGTGAATCTTGCCTCCTTGACATTGCGGTTAAAAAGATTAAAGC
129 GGAACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAAGATTAAAGC
* * * * *
363389 TACAGTAATGAATCTTACCTCCCAGGCGGTGCAGTGGAACAAATTAAAGCCACGACGGTGAATCT
194 CACAGCAACGAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCACGACGGTGAAACT
363454 TG
259 TG
363456 CTCCCCTGAC
Statistics
Matches: 218, Mismatches: 39, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
274 2 0.01
275 213 0.98
276 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (275 bp):
GCGAATCTTACCTCCCAGGCGATGCAATGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTCC
CCGACATTGCAGTTAAAAAGATTAAAGCCACAACAACGAATCCTACTGCCAAGGCGATGCAGTGG
AACAGATTAAAGCCACAACGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAAGATTAAAGCCA
CAGCAACGAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCACGACGGTGAAACTTG
ATTAAAGCTAAAACA
Found at i:363523 original size:200 final size:198
Alignment explanation
Indices: 363197--363686 Score: 660
Period size: 200 Copynumber: 2.4 Consensus size: 198
363187 GCTAAAACAG
* * *
363197 CGAATCTTA-CTCCCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCCGTGAATCTTGCTTCC
1 CGAATCTTACCT-CCCAGGCGGTGCAGTGGAACAGATTAAAGCCACA-CAGTGAATCTTGC-TCC
* *
363261 CCGACATTGCAGTTCAAAAGATTAAAGCTACAACAACGAATCTTACCTCCAAGGCGGTGCAGTGG
63 CCGACATTGCAGTTAAAAAGATTAAAGCTACAACAACGAATCTTACCTCCAAGGCAGTGCAGTGG
* * * *
363326 AACAGATTAAAGCTACAACGGTGAATCTTGCCTCCTTGACATTGCGGTTAAAAAGATTAAAGCTA
128 AACAAATTAAAGCTACAACAGTGAATCTTGCCTCCTTGACATTGCGATTAAAAAGATTAAAACTA
*
363391 CAGTAA
193 CAGCAA
* * *
363397 TGAATCTTACCTCCCAGGCGGTGCAGTGGAACAAATTAAAGCCACGACGGTGAATCTTGCTCCCC
1 CGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCAC-ACAGTGAATCTTGCTCCCC
* * * ** *
363462 TGACATTGCGGTTAAAAAGATTAAAGGTACAGCAGTGAATCTTACCTCCAAGGCAGTGCAGTTGA
65 -GACATTGCAGTTAAAAAGATTAAAGCTACAACAACGAATCTTACCTCCAAGGCAGTGCAGTGGA
363527 ACAAATTAAAGCTACAACAGTGAATCTTGCCTCCTTGACATTGCGATTAAAAAGATTAAAACTAC
129 ACAAATTAAAGCTACAACAGTGAATCTTGCCTCCTTGACATTGCGATTAAAAAGATTAAAACTAC
*
363592 AGCAG
194 AGCAA
* * * * *
363597 CAAATCTTACACTCCCAGGCAGTGTAGT-GAAGCAGATTAAAGCCACAACAGTGAATCTTTCTTC
1 CGAATCTTAC-CTCCCAGGCGGTGCAGTGGAA-CAGATTAAAGCCAC-ACAGTGAATCTTGCTCC
*
363661 CAGACATTGCAGTTAAAAAGATTAAA
63 CCGACATTGCAGTTAAAAAGATTAAA
363687 TCCACAATGC
Statistics
Matches: 255, Mismatches: 30, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
199 5 0.02
200 204 0.80
201 46 0.18
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (198 bp):
CGAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACACAGTGAATCTTGCTCCCCG
ACATTGCAGTTAAAAAGATTAAAGCTACAACAACGAATCTTACCTCCAAGGCAGTGCAGTGGAAC
AAATTAAAGCTACAACAGTGAATCTTGCCTCCTTGACATTGCGATTAAAAAGATTAAAACTACAG
CAA
Found at i:364948 original size:30 final size:30
Alignment explanation
Indices: 364901--364965 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 30
364891 ATTTAAATCA
364901 TATTTTTGTTATGTTTATTATTATTT-TTAG
1 TATTTTTGTTATGTTTA-TATTATTTCTTAG
* *
364931 TATTTTCTTTTAT-TTTATATTTTTTCTTAG
1 TATTTT-TGTTATGTTTATATTATTTCTTAG
*
364961 CATTT
1 TATTT
364966 GTTAGTATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 7 0.23
30 18 0.60
31 5 0.17
ACGTcount: A:0.18, C:0.05, G:0.06, T:0.71
Consensus pattern (30 bp):
TATTTTTGTTATGTTTATATTATTTCTTAG
Found at i:376214 original size:16 final size:16
Alignment explanation
Indices: 376193--376223 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
376183 TAATATGCCG
376193 CATACATACAAGCATA
1 CATACATACAAGCATA
376209 CATACATACAAGCAT
1 CATACATACAAGCAT
376224 TTCTCATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.26, G:0.06, T:0.19
Consensus pattern (16 bp):
CATACATACAAGCATA
Found at i:378875 original size:50 final size:50
Alignment explanation
Indices: 378820--378951 Score: 149
Period size: 50 Copynumber: 2.6 Consensus size: 50
378810 CATTGAGATT
** *
378820 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGTGTTGACACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGACACCGAG
* * * *
378870 ATGAGAGGTCCC-TCGTAAGACCATGTTTGGGACATGGCATGGACACCTAT
1 ATGAGAGGTCCCAT-GTAAGACCATGTCTGGGACATAGCATGGACACCGAG
* ** *
378920 ACGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGA
378952 TATGGCATTG
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 66 0.97
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGACACCGAG
Found at i:380021 original size:14 final size:14
Alignment explanation
Indices: 380002--380028 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
379992 TAGGGGAGAC
380002 TTTAACTAATAAAT
1 TTTAACTAATAAAT
380016 TTTAACTAATAAA
1 TTTAACTAATAAA
380029 CTGTACTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAACTAATAAAT
Found at i:380281 original size:40 final size:40
Alignment explanation
Indices: 380233--380370 Score: 181
Period size: 40 Copynumber: 3.5 Consensus size: 40
380223 GCGTTTGGAC
*
380233 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTTAG
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTAG
* *
380273 ACAAAACGCCGCTAAAGATCGAGCATTAGCGGCGTTTTCAG
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTT-AG
* * *
380314 -GAAAGCGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTAC
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCG-TTTTAG
*
380353 AAAAAACGCCGCAAAAAA
1 AAAAAACGCCGCTAAAAA
380371 CCTAAGCCCA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 15 0.18
40 68 0.80
41 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGTTTTAG
Found at i:380462 original size:41 final size:41
Alignment explanation
Indices: 380405--381366 Score: 1438
Period size: 41 Copynumber: 23.5 Consensus size: 41
380395 GAACCTTTCG
* **
380405 GGGCTTTAGTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
** *
380446 GGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
380487 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
380528 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
380569 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
380610 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
380651 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
380692 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
380733 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
380774 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
380815 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
380856 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
380897 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
380938 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
380979 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
381020 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
381061 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
381102 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
381143 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* ** *
381184 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGTTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* *
381225 GGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
*
381266 GGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
* **
381307 AGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
381348 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
381367 NNNNNNNNNN
Statistics
Matches: 818, Mismatches: 103, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 818 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
Found at i:380627 original size:123 final size:123
Alignment explanation
Indices: 380408--381366 Score: 1864
Period size: 123 Copynumber: 7.8 Consensus size: 123
380398 CCTTTCGGGG
* ** *
380408 CTTTAGTGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
380473 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
380531 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
380596 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
380654 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
380719 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
380777 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
380842 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
380900 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
380965 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
381023 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
381088 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
381146 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
381211 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
381269 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
* *
381334 GCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTT
66 GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTT
381367 NNNNNNNNNN
Statistics
Matches: 830, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 830 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (123 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGGGGAAGC
GCCGCTAATGTTCAGGGCTTTAACGGCGTTTTTGGAAAAGCGCCGCTAATACTCAGGT
Found at i:383350 original size:21 final size:21
Alignment explanation
Indices: 383312--383351 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
383302 CCTAATCTTA
*
383312 CTATCCCTATTGTCCTTTCCC
1 CTATCCCTATTCTCCTTTCCC
383333 CTATCCCT-TTCTCTCTTTC
1 CTATCCCTATTCTC-CTTTC
383352 ATCTTCACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.07, C:0.42, G:0.03, T:0.47
Consensus pattern (21 bp):
CTATCCCTATTCTCCTTTCCC
Found at i:385959 original size:43 final size:42
Alignment explanation
Indices: 385897--386010 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 42
385887 TTCATTTTTA
** *
385897 TAGCGGCATTTGTAATAGAAGCACCGCTAAAGGTCATGATCTT
1 TAGCGGCATTTGTGGTAGAAGCGCCGCTAAAGGTCAT-ATCTT
** * * *
385940 TAGCGGCATTTGTGGTAGAAATGTCACTAAAGGTCATATTTT
1 TAGCGGCATTTGTGGTAGAAGCGCCGCTAAAGGTCATATCTT
* * *
385982 TAGCGACGTTTGTGGTAAAAGCGCCGCTA
1 TAGCGGCATTTGTGGTAGAAGCGCCGCTA
386011 CGGCGTTTTT
Statistics
Matches: 56, Mismatches: 15, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TAGCGGCATTTGTGGTAGAAGCGCCGCTAAAGGTCATATCTT
Found at i:386072 original size:43 final size:43
Alignment explanation
Indices: 386011--386211 Score: 276
Period size: 43 Copynumber: 4.7 Consensus size: 43
386001 AGCGCCGCTA
* * * *
386011 CGGCGTTTTTGAGAAAAGCGTCGCTAAAGGTCTTGTTCTTTAG
1 CGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
* *
386054 CGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTATTGGTCTTTAG
1 CGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
* ***
386097 CGGCGTTTCTGCGAAAAGCGCCGCTAAAGGTCCAAGTCTTTAG
1 CGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
* *
386140 CGGCGTTTCTGGGAAAAGAGCCGCTAAAGGTCCTGGTCTTTAG
1 CGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
* *
386183 CGGCGTTTGTGGGATAAGCGCCGCTAAAG
1 CGGCGTTTCTGGGAAAAGCGCCGCTAAAG
386212 TTAGCGACAC
Statistics
Matches: 141, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.27
Consensus pattern (43 bp):
CGGCGTTTCTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAG
Found at i:386156 original size:86 final size:86
Alignment explanation
Indices: 386011--386238 Score: 278
Period size: 86 Copynumber: 2.6 Consensus size: 86
386001 AGCGCCGCTA
* * ** * *
386011 CGGCGTTTTTGAGAAAAGCGTCGCTAAAGGT-CTTGTTCTTTAGCGGCGTTTTTGGGAAAAGCGC
1 CGGCGTTTCTGAGAAAAGCGCCGCTAAAGGTCCAAG-TCTTTAGCGGCGTTTCTGGGAAAAGAGC
*
386075 CGCTAAAGGTATTGGTCTTTAG
65 CGCTAAAGGTACTGGTCTTTAG
*
386097 CGGCGTTTCTGCGAAAAGCGCCGCTAAAGGTCCAAGTCTTTAGCGGCGTTTCTGGGAAAAGAGCC
1 CGGCGTTTCTGAGAAAAGCGCCGCTAAAGGTCCAAGTCTTTAGCGGCGTTTCTGGGAAAAGAGCC
*
386162 GCTAAAGGTCCTGGTCTTTAG
66 GCTAAAGGTACTGGTCTTTAG
* * * *
386183 CGGCGTTTGTGGGATAAGCGCCGCTAAAGTTAGCGACACAGTCTTTAGCGGCGTTT
1 CGGCGTTTCTGAGAAAAGCGCCGCTAAAGGT--C--CA-AGTCTTTAGCGGCGTTT
386239 TTTCCGGCGC
Statistics
Matches: 123, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
86 101 0.82
87 2 0.02
88 1 0.01
90 2 0.02
91 17 0.14
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (86 bp):
CGGCGTTTCTGAGAAAAGCGCCGCTAAAGGTCCAAGTCTTTAGCGGCGTTTCTGGGAAAAGAGCC
GCTAAAGGTACTGGTCTTTAG
Found at i:396269 original size:40 final size:41
Alignment explanation
Indices: 396214--396557 Score: 285
Period size: 40 Copynumber: 8.3 Consensus size: 41
396204 CGTTTGGATA
*
396214 AAAAACGCCACTATAGATATC-A-CATTAGCGGCGCTTCTTT-
1 AAAAACGCCGCTATAGA-ATCAAGCATTAGCGGCGCTT-TTTG
*
396254 AAAAACACCGCTATAG-ATCAAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
* * *
396294 AAAAACGCCGCTATAGAA-CTAGCATTCGCGGCGTTTTTTG
1 AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
* * *
396334 GAAAGCGCCGCTATAG-GTCGAA-CATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGAATC-AAGCATTAGCGGCGCTTTTTG
* * * * * * **
396374 AAAAACGCCGCAAAAAAACCGTCGAGCTTTGGTGGCCTTAGCGACGCTTTTAT
1 AAAAACGCCGCTATAGAA---TC-A--------AGCATTAGCGGCGCTTTTTG
*
396427 AAAAACGCCGCTATAG-ATCAAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
* * *
396467 AAAAACGCCACTATAG-ATCAGGCATTAGCGGCACTTTTTG
1 AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
* *
396507 AAAAACGCCGCTATAG-GTCAGGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
396547 AAAAACGCCGC
1 AAAAACGCCGC
396558 AAAAAAAAGT
Statistics
Matches: 246, Mismatches: 39, Indels: 38
0.76 0.12 0.12
Matches are distributed among these distances:
38 3 0.01
39 4 0.02
40 202 0.82
41 2 0.01
44 4 0.02
48 1 0.00
49 2 0.01
52 1 0.00
53 27 0.11
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (41 bp):
AAAAACGCCGCTATAGAATCAAGCATTAGCGGCGCTTTTTG
Found at i:396325 original size:80 final size:82
Alignment explanation
Indices: 396214--396557 Score: 314
Period size: 80 Copynumber: 4.1 Consensus size: 82
396204 CGTTTGGATA
* *
396214 AAAAACGCCACTATAGATA-TCA-CATTAGCGGCGCTTCTTT-AAAAACACCGCTATAGATCAAG
1 AAAAACGCCGCTATAGA-ACTCAGCATTAGCGGCGCTTCTTTGAAAAACGCCGCTATAGATCAAG
396276 CATTAGCGGCGCTTTTTG
65 CATTAGCGGCGCTTTTTG
* * * * *
396294 AAAAACGCCGCTATAGAACT-AGCATTCGCGGCG-TTTTTTGGAAAGCGCCGCTATAGGTCGAA-
1 AAAAACGCCGCTATAGAACTCAGCATTAGCGGCGCTTCTTTGAAAAACGCCGCTATAGATC-AAG
396356 CATTAGCGGCGCTTTTTG
65 CATTAGCGGCGCTTTTTG
* * * * *
396374 AAAAACGCCGCAAAAAAACCGTCGAGCTTTGGTGGCCTTAGCGACGCTT-TTAT-AAAAACGCCG
1 AAAAACGCCGCTATAGAA-C-TC-A---------GCATTAGCGGCGCTTCTT-TGAAAAACGCCG
*
396437 CTATAGATCAAGCATTAGCGGTGCTTTTTG
53 CTATAGATCAAGCATTAGCGGCGCTTTTTG
* * * *
396467 AAAAACGCCACTATAG-A-TCAGGCATTAGCGGCACTT-TTTGAAAAACGCCGCTATAGGTCAGG
1 AAAAACGCCGCTATAGAACTCA-GCATTAGCGGCGCTTCTTTGAAAAACGCCGCTATAGATCAAG
396529 CATTAGCGGCGCTTTTTG
65 CATTAGCGGCGCTTTTTG
396547 AAAAACGCCGC
1 AAAAACGCCGC
396558 AAAAAAAAGT
Statistics
Matches: 215, Mismatches: 28, Indels: 42
0.75 0.10 0.15
Matches are distributed among these distances:
79 8 0.04
80 137 0.64
81 3 0.01
82 1 0.00
84 1 0.00
88 1 0.00
89 2 0.01
92 3 0.01
93 56 0.26
94 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (82 bp):
AAAAACGCCGCTATAGAACTCAGCATTAGCGGCGCTTCTTTGAAAAACGCCGCTATAGATCAAGC
ATTAGCGGCGCTTTTTG
Found at i:396451 original size:133 final size:133
Alignment explanation
Indices: 396278--396517 Score: 340
Period size: 133 Copynumber: 1.8 Consensus size: 133
396268 AGATCAAGCA
* * * * * *
396278 TTAGCGGCGCTTTTTGAAAAACGCCGCTATAGAACTAGCATTCGCGGCGTTTTTTGGAAAGCGCC
1 TTAGCGACGCTTTTTGAAAAACGCCGCTATAGAACAAGCATTAGCGGCGCTTTTTGAAAAACGCC
* * *
396343 GCTATAGGTC-GAACATTAGCGGCGCTTTTTGAAAAACGCCGCAAAAAAACCGTCGAGCTTTGGT
66 ACTATAGATCAG-ACATTAGCGGCACTTTTTGAAAAACGCCGCAAAAAAACCGTCGAGCTTTGGT
396407 GGCC
130 GGCC
* *
396411 TTAGCGACGCTTTTAT-AAAAACGCCGCTATAGATCAAGCATTAGCGGTGCTTTTTGAAAAACGC
1 TTAGCGACGCTTTT-TGAAAAACGCCGCTATAGAACAAGCATTAGCGGCGCTTTTTGAAAAACGC
*
396475 CACTATAGATCAGGCATTAGCGGCACTTTTTGAAAAACGCCGC
65 CACTATAGATCAGACATTAGCGGCACTTTTTGAAAAACGCCGC
396518 TATAGGTCAG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
133 91 0.98
134 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (133 bp):
TTAGCGACGCTTTTTGAAAAACGCCGCTATAGAACAAGCATTAGCGGCGCTTTTTGAAAAACGCC
ACTATAGATCAGACATTAGCGGCACTTTTTGAAAAACGCCGCAAAAAAACCGTCGAGCTTTGGTG
GCC
Found at i:396474 original size:173 final size:175
Alignment explanation
Indices: 396236--396697 Score: 580
Period size: 173 Copynumber: 2.6 Consensus size: 175
396226 ATAGATATCA
*
396236 CATTAGCGGCGCTTCTTTAAAAACACCGCTATAGATCAAGCATTAGCGGCGCTTTTTGAAAAACG
1 CATTAGCGGCGCTT-TTTAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTGAAAAACG
* * ** * *
396301 CCGCTATAGAACTA-GCATTCGCGGCGTTTTTTGGAAAGCGCCGCTATAGGTC-GAACATTAGCG
65 CCACTATAGAAC-AGGCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGGTCAG-ACATTAGCG
*
396364 GCGCTTTTTGAAAAACGCCGC-AAAAA-A-ACCGTCGAGCTTTGGTGG
128 GCGCTTTTTGAAAAACGCCGCAAAAAATACACCATCGAGCTTTGGTGG
* * *
396409 CCTTAGCGACGCTTTTATAAAAACGCCGCTATAGATCAAGCATTAGCGGTGCTTTTTGAAAAACG
1 CATTAGCGGCGCTTTT-TAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTGAAAAACG
* *
396474 CCACTATAGATCAGGCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGGTCAGGCATTAGCGGC
65 CCACTATAGAACAGGCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGGTCAGACATTAGCGGC
* *
396539 GCTTTTTGAAAAACGCCGCAAAAAAAAGTTAGCACCATTGAGCTTTTGTGG
130 GCTTTTTGAAAAACGCCGC--AAAAAA--TA-CACCATCGAGCTTTGGTGG
* *
396590 CATTAGCGGCGCTTTTGAAAAACGCCGCTATAGATTAAGCATTAGCGGCGCTTTTT-AAAAAGCG
1 CATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTGAAAAA-CG
* * *
396654 CCACTATAG-ACAGAGCATTAGGGTGC-TTTTTTAAAAAACGCCGC
65 CCACTATAGAACAG-GCATTAGCG-GCACTTTTTGAAAAACGCCGC
396698 AAAAATTATT
Statistics
Matches: 251, Mismatches: 24, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
172 3 0.01
173 130 0.52
174 1 0.00
176 5 0.02
179 9 0.04
180 72 0.29
181 31 0.12
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (175 bp):
CATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCAAGCATTAGCGGCGCTTTTTGAAAAACGC
CACTATAGAACAGGCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGGTCAGACATTAGCGGCG
CTTTTTGAAAAACGCCGCAAAAAATACACCATCGAGCTTTGGTGG
Found at i:396632 original size:140 final size:141
Alignment explanation
Indices: 396448--396702 Score: 374
Period size: 140 Copynumber: 1.8 Consensus size: 141
396438 TATAGATCAA
* *
396448 GCATTAGCGGTGCTTTTTGAAAAACGCCACTATAGATCAGGCATTAGCGGCACTTTTTGAAAAA-
1 GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCAAGCATTAGCGGCACTTTTT-AAAAAG
* * *
396512 CGCCGCTATAGGTCAG-GCATTAGCGGCGC-TTTTTGAAAAACGCCGCAAAAAAAAGTTAGCACC
65 CGCCACTATA-GACAGAGCATTAG-GGCGCTTTTTTAAAAAACGCCGCAAAAAAAAGTTAGCACC
396575 ATTGAGCTTTTGTG
128 ATTGAGCTTTTGTG
* * *
396589 GCATTAGCGGCGC-TTTTGAAAAACGCCGCTATAGATTAAGCATTAGCGGCGCTTTTTAAAAAGC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCAAGCATTAGCGGCACTTTTTAAAAAGC
*
396653 GCCACTATAGACAGAGCATTAGGGTGCTTTTTTAAAAAACGCCGCAAAAA
66 GCCACTATAGACAGAGCATTAGGGCGCTTTTTTAAAAAACGCCGCAAAAA
396703 TTATTTCTTT
Statistics
Matches: 102, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
139 13 0.13
140 77 0.75
141 12 0.12
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (141 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCAAGCATTAGCGGCACTTTTTAAAAAGC
GCCACTATAGACAGAGCATTAGGGCGCTTTTTTAAAAAACGCCGCAAAAAAAAGTTAGCACCATT
GAGCTTTTGTG
Found at i:396672 original size:40 final size:39
Alignment explanation
Indices: 396589--396695 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 39
396579 AGCTTTTGTG
* * *
396589 GCATTAGCGGCGCTTTTGAAAAACGCCGCTATAGATTAA
1 GCATTAGCGGCGCTTTTTAAAAACGCCACTATAGATCAA
396628 GCATTAGCGGCGCTTTTTAAAAAGCGCCACTATAGA-CAGA
1 GCATTAGCGGCGCTTTTTAAAAA-CGCCACTATAGATCA-A
*
396668 GCATTAG-GGTGCTTTTTTAAAAAACGCC
1 GCATTAGCGGCGC-TTTTT-AAAAACGCC
396696 GCAAAAATTA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
39 27 0.45
40 28 0.47
41 5 0.08
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (39 bp):
GCATTAGCGGCGCTTTTTAAAAACGCCACTATAGATCAA
Found at i:400838 original size:43 final size:43
Alignment explanation
Indices: 400777--401084 Score: 458
Period size: 43 Copynumber: 7.2 Consensus size: 43
400767 NNNNNNNNNN
* *
400777 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTCGGTATTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
* *
400820 GGCGTTTTTTGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
* *
400863 GGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCTTAGTCTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
* *
400906 GGCGTTTGTGGGAAAAGCACGGCTAAAGGTCTTGGTCTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
* *
400949 GGCGATTGCGGGAAAAGCGCCGCTAAAGGT-TGTGGTCTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT-TGGTCTTTAGC
* ** *
400992 GGCGTTT-TCGGTAAAAGCGTTGCTAAAGGTCTTGGTCTTCAGC
1 GGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
401035 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
401078 GGCGTTT
1 GGCGTTT
401085 TTAGAAAAAA
Statistics
Matches: 236, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.00
43 233 0.99
44 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGC
Found at i:401208 original size:22 final size:22
Alignment explanation
Indices: 401180--401222 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
401170 TAGTGGCGCT
*
401180 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
401202 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
401223 GTTTTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:405989 original size:15 final size:15
Alignment explanation
Indices: 405969--405998 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
405959 GCTTAAAGAG
405969 CATTCAACAAAAAAA
1 CATTCAACAAAAAAA
*
405984 CATTCAATAAAAAAA
1 CATTCAACAAAAAAA
405999 TCTAAAGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (15 bp):
CATTCAACAAAAAAA
Found at i:406013 original size:14 final size:14
Alignment explanation
Indices: 405996--406026 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
405986 TTCAATAAAA
*
405996 AAATCTAAAGTAAC
1 AAATATAAAGTAAC
406010 AAATATAAAGTAAC
1 AAATATAAAGTAAC
406024 AAA
1 AAA
406027 CTTTAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (14 bp):
AAATATAAAGTAAC
Found at i:406969 original size:16 final size:15
Alignment explanation
Indices: 406948--406991 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
406938 ATACATATAA
*
406948 TTAGTTAAATTTAAAC
1 TTAGTT-AATTAAAAC
406964 TTAGTTAATTAAAAC
1 TTAGTTAATTAAAAC
*
406979 TTTAATTAATTAA
1 -TTAGTTAATTAA
406992 CTAATTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (15 bp):
TTAGTTAATTAAAAC
Found at i:407086 original size:92 final size:93
Alignment explanation
Indices: 406950--407134 Score: 363
Period size: 92 Copynumber: 2.0 Consensus size: 93
406940 ACATATAATT
406950 AGTTAAATTTAAACTTAGTTAATTAAAACTTTAATTAATTAACTAATTGTTTTCTTAATCTACCG
1 AGTTAAATTTAAACTTAGTTAATTAAAACTTTAATTAATTAACTAATTGTTTTCTTAATCTACCG
407015 GTCCACTATATTATGCTTTATTAAGGTC
66 GTCCACTATATTATGCTTTATTAAGGTC
407043 AGTTAAATTT-AACTTAGTTAATTAAAACTTTAATTAATTAACTAATTGTTTTCTTAATCTACCG
1 AGTTAAATTTAAACTTAGTTAATTAAAACTTTAATTAATTAACTAATTGTTTTCTTAATCTACCG
407107 GTCCACTATATTATGCTTTATTAAGGTC
66 GTCCACTATATTATGCTTTATTAAGGTC
407135 TAATTGTTAT
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 82 0.89
93 10 0.11
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (93 bp):
AGTTAAATTTAAACTTAGTTAATTAAAACTTTAATTAATTAACTAATTGTTTTCTTAATCTACCG
GTCCACTATATTATGCTTTATTAAGGTC
Found at i:411307 original size:122 final size:122
Alignment explanation
Indices: 411144--411631 Score: 949
Period size: 122 Copynumber: 4.0 Consensus size: 122
411134 GAGGATATTA
411144 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
411209 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
*
411266 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCGGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
411331 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
411388 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
411453 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
*
411510 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCGGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
*
411575 AGCTAAGATACATGCCTGATAATGAGCACTTCTAGCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
411632 TGCCAGAGAT
Statistics
Matches: 362, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 362 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (122 bp):
ATACATTGCAGTAAGGAAACACATACATTAACTAAAGCATCTTACATGTACATCAGTAAACAAGC
AGCTAAGATACATGCCTGATAATGAGCACTTCTATCAAAGACACTAATAGTGATAAG
Found at i:413563 original size:21 final size:21
Alignment explanation
Indices: 413524--413564 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
413514 ATTTATACGG
413524 CCAGATGCTCATTTTACTTGA
1 CCAGATGCTCATTTTACTTGA
413545 CCAGATGCTCATTTTACTTG
1 CCAGATGCTCATTTTACTTG
413565 TGTTATTCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (21 bp):
CCAGATGCTCATTTTACTTGA
Found at i:419457 original size:16 final size:15
Alignment explanation
Indices: 419430--419463 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
419420 ATAACTAGTA
*
419430 TATAATTATATTTAT
1 TATAATTATATTAAT
419445 TATAATATATATTAAT
1 TATAAT-TATATTAAT
419461 TAT
1 TAT
419464 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:435527 original size:14 final size:14
Alignment explanation
Indices: 435518--435544 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
435508 AATTTTTTTT
435518 ACTTAGTTTTTAAC
1 ACTTAGTTTTTAAC
435532 ACTTAGTTTTTAA
1 ACTTAGTTTTTAA
435545 TCATCTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (14 bp):
ACTTAGTTTTTAAC
Found at i:442684 original size:34 final size:34
Alignment explanation
Indices: 442641--442708 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
442631 GTCCAATACA
442641 AGCTGAGTCTAGGGTTTTTTAAACCTAAAATTAT
1 AGCTGAGTCTAGGGTTTTTTAAACCTAAAATTAT
442675 AGCTGAGTCTAGGGTTTTTTAAACCTAAAATTAT
1 AGCTGAGTCTAGGGTTTTTTAAACCTAAAATTAT
442709 CTATCTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (34 bp):
AGCTGAGTCTAGGGTTTTTTAAACCTAAAATTAT
Found at i:459202 original size:10 final size:10
Alignment explanation
Indices: 459178--459217 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
459168 ATTTCTACGA
459178 ATATCACATAT
1 ATATCACA-AT
459189 ATATCACAAT
1 ATATCACAAT
*
459199 ATATCACACT
1 ATATCACAAT
459209 ATATCACAA
1 ATATCACAA
459218 GACTTGTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (10 bp):
ATATCACAAT
Found at i:462987 original size:32 final size:30
Alignment explanation
Indices: 462951--463017 Score: 73
Period size: 32 Copynumber: 2.2 Consensus size: 30
462941 AAAATGTAAG
**
462951 ATTTAACTTTTTTTTTATAAATTAAAACC-TAT
1 ATTTAACTACTTTTTTA-AAA--AAAACCTTAT
*
462983 ATTTATCTACTTTTTTAAAAAAAACCTTAT
1 ATTTAACTACTTTTTTAAAAAAAACCTTAT
463013 ATTTA
1 ATTTA
463018 TAAATAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
29 6 0.19
30 8 0.26
31 3 0.10
32 14 0.45
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTTAACTACTTTTTTAAAAAAAACCTTAT
Found at i:469919 original size:28 final size:28
Alignment explanation
Indices: 469888--469975 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
469878 CATGCAATAG
* * * *
469888 CAGTCTGGGCCTGAGCCCTATACAGCAA
1 CAGTGTGGGCCTTAGCCCAATACAGTAA
* *
469916 CAGTGTAGGCCTTAGCCCAATACAATAA
1 CAGTGTGGGCCTTAGCCCAATACAGTAA
*
469944 TAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTGTGGGCCTTAGCCCAATACAGTAA
469972 CAGT
1 CAGT
469976 ACAATGCAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACAGTAA
Found at i:470111 original size:26 final size:26
Alignment explanation
Indices: 470081--470157 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
470071 ACACCAATAT
*
470081 CGCAGCAAAGCTGCCAGTAATAGTGA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* * * * *
470107 TGCAGTAAAGCTGCCAATAACAGAAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
**
470133 CATAGCAAAGCTGCCAGTAATAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
470158 TATGTGGCAA
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.17
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:470357 original size:27 final size:27
Alignment explanation
Indices: 470338--471264 Score: 1800
Period size: 27 Copynumber: 34.3 Consensus size: 27
470328 GGGTATAACA
* *
470338 GTCATTTTACTCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* * *
470365 ATAATTTTACCCTTCGAGGGTATTTTG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470392 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470419 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470446 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470473 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470500 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470527 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470554 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470581 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470608 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470635 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470662 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470689 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470716 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470743 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470770 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470797 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470824 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470851 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470878 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470905 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470932 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470959 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
470986 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471013 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471040 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471067 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471094 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471121 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471148 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471175 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
471202 GTCATTTTACCCTTCGAGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
471229 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
471256 GTCATTTTA
1 GTCATTTTA
471265 GGCTCATTAC
Statistics
Matches: 890, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 890 1.00
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTCG
Found at i:481227 original size:60 final size:60
Alignment explanation
Indices: 481130--481246 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 60
481120 CTAAGGTCAT
* * **
481130 TAAACTATTCGTAAGTTTACACTTTGGTCACTCAACTT-AAAAAAGTTACAAAATGATTGA
1 TAAACTACTCGAAAGTTTACACTTTAATCACTCAACTTCAAAAAA-TTACAAAATGATTGA
* * *
481190 TAAACTACTCGAAAGTTTACACTTTAATTATTTAACTTCAAAAAATTACAAAATGAT
1 TAAACTACTCGAAAGTTTACACTTTAATCACTCAACTTCAAAAAATTACAAAATGAT
481247 CATTGAATTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
60 43 0.88
61 6 0.12
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (60 bp):
TAAACTACTCGAAAGTTTACACTTTAATCACTCAACTTCAAAAAATTACAAAATGATTGA
Found at i:483532 original size:15 final size:16
Alignment explanation
Indices: 483514--483550 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
483504 TTATTATGAG
483514 ACTTACAACT-ATGTC
1 ACTTACAACTAATGTC
*
483529 ACTTA-AACTAATTTC
1 ACTTACAACTAATGTC
483544 ACTTACA
1 ACTTACA
483551 CTCAATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 4 0.21
15 14 0.74
16 1 0.05
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (16 bp):
ACTTACAACTAATGTC
Found at i:487729 original size:35 final size:35
Alignment explanation
Indices: 487682--487753 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
487672 TTATGTATTC
487682 TTTTAAATTTTTATAAA-ATTTT-AAAATATATAAA
1 TTTTAAATTTTTATAAATATTTTGAAAATATA-AAA
*
487716 TTTTGAAATTTTTATAAATATTTTGAAAATTTAAAA
1 TTTT-AAATTTTTATAAATATTTTGAAAATATAAAA
487752 TT
1 TT
487754 ATTTTGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
34 4 0.12
35 13 0.38
36 10 0.29
37 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (35 bp):
TTTTAAATTTTTATAAATATTTTGAAAATATAAAA
Found at i:487756 original size:19 final size:20
Alignment explanation
Indices: 487682--487760 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 20
487672 TTATGTATTC
*
487682 TTTT-AAATTTTTATAAA-A
1 TTTTGAAATATTTATAAATA
*
487700 TTTT-AAA-ATATAT-AA-A
1 TTTTGAAATATTTATAAATA
*
487716 TTTTGAAATTTTTATAAATA
1 TTTTGAAATATTTATAAATA
487736 TTTTGAAA-ATTTA-AAATTA
1 TTTTGAAATATTTATAAA-TA
487755 TTTTGA
1 TTTTGA
487761 TTTTTCTGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
16 7 0.14
17 7 0.14
18 14 0.27
19 14 0.27
20 9 0.18
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (20 bp):
TTTTGAAATATTTATAAATA
Found at i:501745 original size:25 final size:24
Alignment explanation
Indices: 501705--501761 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
501695 TTTTTATTTC
501705 TTTATAA--ACTTTAATTACGAAT
1 TTTATAAGGACTTTAATTACGAAT
*
501727 TTTATAAGGACTTTAAATTAGGAAT
1 TTTATAAGGACTTT-AATTACGAAT
* *
501752 TCTATTAGGA
1 TTTATAAGGA
501762 ATTCTATTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.24
24 5 0.17
25 17 0.59
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (24 bp):
TTTATAAGGACTTTAATTACGAAT
Found at i:501760 original size:12 final size:12
Alignment explanation
Indices: 501743--501773 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
501733 AGGACTTTAA
501743 ATTAGGAATTCT
1 ATTAGGAATTCT
501755 ATTAGGAATTCT
1 ATTAGGAATTCT
501767 ATTAGGA
1 ATTAGGA
501774 CTTTCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (12 bp):
ATTAGGAATTCT
Found at i:503221 original size:12 final size:12
Alignment explanation
Indices: 503206--503231 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
503196 TAAAAAATAA
503206 AATAATAATAGT
1 AATAATAATAGT
503218 AATAATAATAGT
1 AATAATAATAGT
503230 AA
1 AA
503232 ATTAATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:503272 original size:79 final size:78
Alignment explanation
Indices: 503127--503273 Score: 170
Period size: 79 Copynumber: 1.9 Consensus size: 78
503117 ATATAAAAAG
** * * * **
503127 AAATATAATAGAAATAATAATGTAAAACTAATTAATTTAATAATATGATAATAATAGCAAGTAAA
1 AAATATAATAGAAATAATAATGTAAAACTAATTAATTTAATAATAAAATAACAAAAACAACAAAA
503192 AAAATAAAAAATA
66 AAAATAAAAAATA
* * * *
503205 AAATAATAATAGTAATAATAATAGT-AAATTAATTAATTTAATAATAAAATAGCAAAAATAACAA
1 AAAT-ATAATAGAAATAATAAT-GTAAAACTAATTAATTTAATAATAAAATAACAAAAACAACAA
503269 AAAAA
64 AAAAA
503274 TGGACTAAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
78 4 0.07
79 50 0.89
80 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (78 bp):
AAATATAATAGAAATAATAATGTAAAACTAATTAATTTAATAATAAAATAACAAAAACAACAAAA
AAAATAAAAAATA
Found at i:503872 original size:9 final size:9
Alignment explanation
Indices: 503854--503884 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
503844 TTTGGTTAAA
503854 AATTAACCG
1 AATTAACCG
*
503863 AATTACCCG
1 AATTAACCG
503872 AATTAACCG
1 AATTAACCG
503881 AATT
1 AATT
503885 GAATCACTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:503914 original size:17 final size:17
Alignment explanation
Indices: 503892--503952 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
503882 ATTGAATCAC
503892 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
503909 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
503929 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
*
503946 TATATAA
1 TACATAA
503953 GTCTTGAAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.59
20 13 0.41
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:503924 original size:37 final size:37
Alignment explanation
Indices: 503883--503957 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
503873 ATTAACCGAA
503883 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
*
503920 TTGAATCACTACATAATTAAAAACATTATATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
503957 T
1 T
503958 GAAATTAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:503971 original size:37 final size:37
Alignment explanation
Indices: 503883--503974 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
503873 ATTAACCGAA
*
503883 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
* *
503920 TTGAATCACTACATAATTAAAAACATTATATAAGTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
503956 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
503975 GAAATGTAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 3 0.06
37 45 0.88
38 3 0.06
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:504953 original size:9 final size:9
Alignment explanation
Indices: 504935--504992 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
504925 TTTGGTTAAA
504935 AATTAACCG
1 AATTAACCG
*
504944 AATTACCCG
1 AATTAACCG
504953 AATTAACCG
1 AATTAACCG
* *
504962 GATTACCCG
1 AATTAACCG
*
504971 AATTATCCG
1 AATTAACCG
504980 AATTAACCG
1 AATTAACCG
504989 AATT
1 AATT
504993 GAATCACTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:504958 original size:18 final size:18
Alignment explanation
Indices: 504935--504992 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
504925 TTTGGTTAAA
504935 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
*
504953 AATTAACCGGATTACCCG
1 AATTAACCGAATTACCCG
* *
504971 AATTATCCGAATTAACCG
1 AATTAACCGAATTACCCG
504989 AATT
1 AATT
504993 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:505117 original size:18 final size:18
Alignment explanation
Indices: 505094--505137 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
505084 TAATTTTATG
*
505094 ATTGGGTTGAGTTGGGTA
1 ATTGGGTTGAGTTGGATA
*
505112 ATTGGGTTGGGTTGGATA
1 ATTGGGTTGAGTTGGATA
*
505130 CTTGGGTT
1 ATTGGGTT
505138 TGGATTGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGAGTTGGATA
Found at i:506735 original size:27 final size:28
Alignment explanation
Indices: 506696--506748 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
506686 TATATTATTA
*
506696 AATTATTTTATAAAAATAAAATTTATAT
1 AATTATTTTATAAAAACAAAATTTATAT
*
506724 AATT-TTTTATAATAACAAAATTTAT
1 AATTATTTTATAAAAACAAAATTTAT
506749 TTGTATTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (28 bp):
AATTATTTTATAAAAACAAAATTTATAT
Found at i:508533 original size:58 final size:58
Alignment explanation
Indices: 508442--508555 Score: 201
Period size: 58 Copynumber: 2.0 Consensus size: 58
508432 TGATACTTGA
*
508442 TTTCATTTGGATTAAATAAGAATTACTTCATTTCCTTTCCAAATTCATGCGTCAATGG
1 TTTCATTTGGATTAAATAAGAATTACTTCATTTCCTTTCCAAATTCATGCATCAATGG
* *
508500 TTTCATTTGGATTAAATAAGAATTATTTTATTTCCTTTCCAAATTCATGCATCAAT
1 TTTCATTTGGATTAAATAAGAATTACTTCATTTCCTTTCCAAATTCATGCATCAAT
508556 AGCTATTGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.44
Consensus pattern (58 bp):
TTTCATTTGGATTAAATAAGAATTACTTCATTTCCTTTCCAAATTCATGCATCAATGG
Found at i:509273 original size:17 final size:18
Alignment explanation
Indices: 509241--509279 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
509231 CTGATTACAA
509241 AATTCGAATTTAATTTCC
1 AATTCGAATTTAATTTCC
*
509259 AATTC-AATTTTATTTCC
1 AATTCGAATTTAATTTCC
509276 AATT
1 AATT
509280 TATTTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.49
Consensus pattern (18 bp):
AATTCGAATTTAATTTCC
Found at i:515782 original size:43 final size:42
Alignment explanation
Indices: 515716--515847 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 42
515706 AACTCGTACA
515716 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACA-GTAATCACATATCG
** *
515759 ATGCCACTGTCCCAGACAGGGTCTTACACAAATCAAATA-CG
1 ATGCCACTGTCCCAGACAGGGTCTTACAGTAATCACATATCG
* * *
515800 ATGCCAATGTCCCAGACATGGTCTTACACGTAAACACA-AGTCG
1 ATGCCACTGTCCCAGACAGGGTCTTACA-GTAATCACATA-TCG
515843 ATGCC
1 ATGCC
515848 TAGACGTAGT
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
41 29 0.39
42 15 0.20
43 30 0.40
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACAGGGTCTTACAGTAATCACATATCG
Found at i:515814 original size:41 final size:42
Alignment explanation
Indices: 515716--515828 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
515706 AACTCGTACA
* ** *
515716 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACA-CAAATCAAATATCG
*
515759 ATGCCACTGTCCCAGACAGGGTCTTACACAAATCAAATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATATCG
*
515800 ATGCCAATGTCCCAGACATGGTCTTACAC
1 ATGCCAATGTCCCAGACAGGGTCTTACAC
515829 GTAAACACAA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 29 0.47
42 8 0.13
43 24 0.39
44 1 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATATCG
Found at i:521369 original size:17 final size:17
Alignment explanation
Indices: 521338--521379 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
521328 TTTCTATTTC
*
521338 ATAAAT-AAATTAATTA
1 ATAAATAAAATAAATTA
*
521354 ATTAATAAAATAAATTA
1 ATAAATAAAATAAATTA
521371 ATAAATAAA
1 ATAAATAAA
521380 GGCTCAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAATAAAATAAATTA
Found at i:523874 original size:24 final size:23
Alignment explanation
Indices: 523847--523894 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
523837 TCATGACATC
*
523847 ATTTATGCCACGTGTCATAATCTT
1 ATTT-TGCCACGTGTCATAAACTT
* *
523871 ATTTTGTCACGTGTCCTAAACTT
1 ATTTTGCCACGTGTCATAAACTT
523894 A
1 A
523895 ACGACGTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (23 bp):
ATTTTGCCACGTGTCATAAACTT
Found at i:524961 original size:16 final size:15
Alignment explanation
Indices: 524942--524991 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 15
524932 CTTATAATAA
*
524942 TTTATATTATATTAT
1 TTTATATTATGTTAT
524957 TTT-TA-TATGTTA-
1 TTTATATTATGTTAT
524969 TTTATATTATGTTATT
1 TTTATATTATGTTA-T
524985 TTTATAT
1 TTTATAT
524992 ATTATGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 3 0.10
13 8 0.27
14 9 0.30
15 3 0.10
16 7 0.23
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (15 bp):
TTTATATTATGTTAT
Found at i:524971 original size:13 final size:13
Alignment explanation
Indices: 524953--524996 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
524943 TTATATTATA
524953 TTATTTTTATATG
1 TTATTTTTATATG
*
524966 TTATTTATATTATG
1 TTATTTTTA-TATG
*
524980 TTATTTTTATATA
1 TTATTTTTATATG
524993 TTAT
1 TTAT
524997 GTAATTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (13 bp):
TTATTTTTATATG
Found at i:524972 original size:27 final size:27
Alignment explanation
Indices: 524933--524996 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
524923 ATTTTTAAGC
*
524933 TTATA-ATAATTTATATTATATTATTT
1 TTATATATTATTTATATTATATTATTT
* *
524959 TTATATGTTATTTATATTATGTTATTT
1 TTATATATTATTTATATTATATTATTT
524986 TTATATATTAT
1 TTATATATTAT
524997 GTAATTTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 5 0.15
27 28 0.85
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (27 bp):
TTATATATTATTTATATTATATTATTT
Found at i:524981 original size:14 final size:14
Alignment explanation
Indices: 524941--524985 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
524931 GCTTATAATA
*
524941 ATTTATATTATATT
1 ATTTATATTATGTT
*
524955 ATTTTTA-TATGTT
1 ATTTATATTATGTT
524968 ATTTATATTATGTT
1 ATTTATATTATGTT
524982 ATTT
1 ATTT
524986 TTATATATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
ATTTATATTATGTT
Found at i:525130 original size:7 final size:7
Alignment explanation
Indices: 525112--525156 Score: 56
Period size: 7 Copynumber: 6.1 Consensus size: 7
525102 AAAAAATGTG
525112 TTAAATTA
1 TTAAA-TA
525120 TTAAATA
1 TTAAATA
525127 TTAAATA
1 TTAAATA
525134 TTAAATAA
1 TTAAAT-A
525142 TATAAATA
1 T-TAAATA
525150 -TAAATA
1 TTAAATA
525156 T
1 T
525157 ATATTTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
6 6 0.18
7 15 0.44
8 8 0.24
9 5 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAATA
Found at i:525153 original size:22 final size:22
Alignment explanation
Indices: 525112--525156 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
525102 AAAAAATGTG
*
525112 TTAAATTATTAAATATTAAATA
1 TTAAATAATTAAATATTAAATA
525134 TTAAATAATATAAATA-TAAATA
1 TTAAATAAT-TAAATATTAAATA
525156 T
1 T
525157 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TTAAATAATTAAATATTAAATA
Found at i:525158 original size:14 final size:15
Alignment explanation
Indices: 525113--525159 Score: 62
Period size: 14 Copynumber: 3.1 Consensus size: 15
525103 AAAAATGTGT
525113 TAAATTATTAAATAT-
1 TAAA-TATTAAATATA
525128 TAAATATTAAATAATA
1 TAAATATTAAAT-ATA
525144 TAAATA-TAAATATA
1 TAAATATTAAATATA
525158 TA
1 TA
525160 TTTTAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 13 0.43
15 11 0.37
16 6 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAATATTAAATATA
Found at i:525160 original size:16 final size:17
Alignment explanation
Indices: 525124--525160 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
525114 AAATTATTAA
525124 ATAT-TAAATATTAAAT
1 ATATATAAATATTAAAT
525140 A-ATATAAATA-TAAAT
1 ATATATAAATATTAAAT
525155 ATATAT
1 ATATAT
525161 TTTAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATAAATATTAAAT
Found at i:525784 original size:14 final size:13
Alignment explanation
Indices: 525759--525783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
525749 GATGGTAGTT
525759 TTTAATTTTTTTG
1 TTTAATTTTTTTG
525772 TTTAATTTTTTT
1 TTTAATTTTTTT
525784 TTTGGGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TTTAATTTTTTTG
Found at i:530643 original size:57 final size:59
Alignment explanation
Indices: 530512--530657 Score: 192
Period size: 57 Copynumber: 2.5 Consensus size: 59
530502 ATTGACGGTA
*
530512 AAAAGGATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCTCCCGAAGAATATGTGTG
1 AAAAGGATCTAGCCCGGACGGGTGATCC-AT-CTGATATAGCCTCCCGAAGAACATGTGTG
*
530573 AAAAAGATCTAGCCCGGACGGGTGAT-C-T-TGATATAGCCCTCCCGAAGAACATGTG-G
1 AAAAGGATCTAGCCCGGACGGGTGATCCATCTGATATAG-CCTCCCGAAGAACATGTGTG
* *
530629 AAAATGGATTTAGCCCGGACGGGTAATCC
1 AAAA-GGATCTAGCCCGGACGGGTGATCC
530658 GAATTAGGGT
Statistics
Matches: 77, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
56 13 0.17
57 36 0.47
58 2 0.03
60 1 0.01
61 25 0.32
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (59 bp):
AAAAGGATCTAGCCCGGACGGGTGATCCATCTGATATAGCCTCCCGAAGAACATGTGTG
Found at i:530892 original size:67 final size:67
Alignment explanation
Indices: 530782--530910 Score: 215
Period size: 67 Copynumber: 1.9 Consensus size: 67
530772 TATATTACAA
*
530782 GGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATAAGGTTCGC-GAGAGTGTGCTCTCTTG
1 GGGATTTAGCCTGGACTGGTAATCCAGCTGTAAGAAATAAGGTTCGCAG-GAGTGTGCTCTCTTG
530846 CAG
65 CAG
* *
530849 GGGATTTAGCCTGGACTGGTAATCCAGCTGTAAGAAATGAGGTTTGCAGGAGTGTGCTCTCT
1 GGGATTTAGCCTGGACTGGTAATCCAGCTGTAAGAAATAAGGTTCGCAGGAGTGTGCTCTCT
530911 GAATTGGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
67 57 0.98
68 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (67 bp):
GGGATTTAGCCTGGACTGGTAATCCAGCTGTAAGAAATAAGGTTCGCAGGAGTGTGCTCTCTTGC
AG
Found at i:538303 original size:19 final size:19
Alignment explanation
Indices: 538268--538308 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
538258 TCAAAGATTA
*
538268 TATAAAAGTTCTCAAAAAT
1 TATAAAAGTTATCAAAAAT
* *
538287 TATAAAAGTTATTAAAATT
1 TATAAAAGTTATCAAAAAT
538306 TAT
1 TAT
538309 TGAAGGAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (19 bp):
TATAAAAGTTATCAAAAAT
Found at i:538358 original size:10 final size:10
Alignment explanation
Indices: 538320--538361 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
538310 GAAGGAGTAG
538320 TAATTTTTAA
1 TAATTTTTAA
*
538330 -AATTTTTTA
1 TAATTTTTAA
**
538339 TAATACTTAA
1 TAATTTTTAA
538349 TAATTTTTAA
1 TAATTTTTAA
538359 TAA
1 TAA
538362 CTTATATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:538372 original size:17 final size:17
Alignment explanation
Indices: 538333--538374 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
538323 TTTTTAAAAT
538333 TTTTTATAATACTTAATA
1 TTTTT-TAATACTTAATA
*
538351 ATTTTTAATAACTT-ATA
1 TTTTTTAAT-ACTTAATA
538368 TTTTTTA
1 TTTTTTA
538375 TATTTTCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTTTAATACTTAATA
Found at i:538407 original size:17 final size:16
Alignment explanation
Indices: 538369--538409 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
538359 TAACTTATAT
538369 TTTTTATATTTTCCTA
1 TTTTTATATTTTCCTA
*
538385 TTTTTATAGTTTTTCTA
1 TTTTTATA-TTTTCCTA
538402 TTTTTATA
1 TTTTTATA
538410 AAATATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTTATATTTTCCTA
Found at i:538896 original size:30 final size:31
Alignment explanation
Indices: 538845--538906 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
538835 TTTTTCTAAA
* * *
538845 TTTTATAATATTTATAGTTTTTCT-ATATTT
1 TTTTATAATATTTAAAATTTTTATAATATTT
538875 TTTTATAAT-TTTACAAATTTTTATAATATTT
1 TTTTATAATATTTA-AAATTTTTATAATATTT
538906 T
1 T
538907 AATAAATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 4 0.15
30 16 0.59
31 7 0.26
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (31 bp):
TTTTATAATATTTAAAATTTTTATAATATTT
Found at i:546561 original size:22 final size:23
Alignment explanation
Indices: 546535--546594 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
546525 ATGCACTAAT
546535 GAACAGAGAGCACAGATGTGCTA
1 GAACAGAGAGCACAGATGTGCTA
* *
546558 -AACAGATAGCACTGATGTGCTA
1 GAACAGAGAGCACAGATGTGCTA
546580 GTAATCAGAGAGCAC
1 G-AA-CAGAGAGCAC
546595 CAACGTGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 20 0.65
24 2 0.06
25 9 0.29
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.17
Consensus pattern (23 bp):
GAACAGAGAGCACAGATGTGCTA
Found at i:546594 original size:25 final size:24
Alignment explanation
Indices: 546538--546616 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 24
546528 CACTAATGAA
546538 CAGAGAGCACAGATGTGCTA-AA-
1 CAGAGAGCACAGATGTGCTATAAT
* *
546560 CAGATAGCACTGATGTGCTAGTAAT
1 CAGAGAGCACAGATGTGCTA-TAAT
*
546585 CAGAGAGCACCA-ACGTGCTAATAAT
1 CAGAGAGCA-CAGATGTGCT-ATAAT
546610 CAGAGAG
1 CAGAGAG
546617 GACGCTAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
22 18 0.38
24 2 0.04
25 25 0.53
26 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.18
Consensus pattern (24 bp):
CAGAGAGCACAGATGTGCTATAAT
Found at i:547575 original size:5 final size:5
Alignment explanation
Indices: 547565--547603 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
547555 TTATTTGTTT
*
547565 ATATA ATATA ATA-A GT-TA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA A
547604 AAATATCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:547608 original size:23 final size:23
Alignment explanation
Indices: 547565--547609 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
547555 TTATTTGTTT
**
547565 ATATAATATAATAAGTTAATATA
1 ATATAATATAATAAGAAAATATA
547588 ATATAATATAATATA-AAAATAT
1 ATATAATATAATA-AGAAAATAT
547610 CTTTGATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
ATATAATATAATAAGAAAATATA
Found at i:559355 original size:135 final size:137
Alignment explanation
Indices: 559111--559616 Score: 538
Period size: 144 Copynumber: 3.6 Consensus size: 137
559101 CGAAGTTACA
* * * *
559111 AGCTTAATTCAGCTAACTCAAATAAATGAAGGCTGTGAACATAACTCAGCTAACCTTCAAACATC
1 AGCTTAACTCAACTAACTCAAATAAATGAAGGCTGTGAGCATAACTCAGCTAACCTTTAAACATC
* * * * *
559176 -AGTTGGTAGCGTAGGTCCATGAGCTATGTCGAAGTTTATCAGCTGGGAGGGTA-G-GTCAGCCA
66 AACTAGG-AGCGTAGGTCCATGAGCTGTGTCGAAGTTTATCAGCTGGGAGCGTAGGTGTAAGCCA
559238 GAGTTGCG
130 GAGTTGCG
* * *
559246 AGCTTAACTCAACTAACTCAAATAAATGAAGGTTGTGAGCATAACTCAACTAACCTTTAAACATT
1 AGCTTAACTCAACTAACTCAAATAAATGAAGGCTGTGAGCATAACTCAGCTAACCTTTAAACATC
* * * *
559311 AACTAGGAGCGCAGGTCCATGAGTTGTGTCGAAGTTTATTAGCTGAGAGCGTAGGTTTGTAAGCT
66 AACTAGGAGCGTAGGTCCATGAGCTGTGTCGAAGTTTATCAGCTGGGAGCGTAGG--TGTAAGC-
559376 GTTTC-GAAGTTGCG
128 ----CAG-AGTTGCG
* * * * *
559390 AGCTTAAC-CTAGCTAACTAAAATAAATGAATGTTGTGAGCATAACTCATCTAACCTTTAAACAT
1 AGCTTAACTC-AACTAACTCAAATAAATGAAGGCTGTGAGCATAACTCAGCTAACCTTTAAACAT
* *
559454 CAACTAGGACCGTAGGTCCACGAGCTGTGTC-AGAGTTTATCAGCTGGGAGCGTAGGTTTGTGAG
65 CAACTAGGAGCGTAGGTCCATGAGCTGTGTCGA-AGTTTATCAGCTGGGAGCGTAGG--TGT-A-
* *
559518 TTGTTTCAGAGTTGCG
125 -AG--CCAGAGTTGCG
* * * *
559534 AGCTTAACTCAACTAACACAAATAAATAAAGGCTGTAAGCATAACTCAGCTAAGCTTTAAACATC
1 AGCTTAACTCAACTAACTCAAATAAATGAAGGCTGTGAGCATAACTCAGCTAACCTTTAAACATC
*
559599 AACTAGGAGCATAGGTCC
66 AACTAGGAGCGTAGGTCC
559617 GCAAGCTGTT
Statistics
Matches: 311, Mismatches: 40, Indels: 31
0.81 0.10 0.08
Matches are distributed among these distances:
135 98 0.32
136 5 0.02
139 5 0.02
143 3 0.01
144 196 0.63
145 3 0.01
147 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (137 bp):
AGCTTAACTCAACTAACTCAAATAAATGAAGGCTGTGAGCATAACTCAGCTAACCTTTAAACATC
AACTAGGAGCGTAGGTCCATGAGCTGTGTCGAAGTTTATCAGCTGGGAGCGTAGGTGTAAGCCAG
AGTTGCG
Found at i:593216 original size:2 final size:2
Alignment explanation
Indices: 593209--593239 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
593199 AAAGCAAAGT
*
593209 TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
593240 TAACTCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:595023 original size:7 final size:7
Alignment explanation
Indices: 595011--595049 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
595001 NNNNNNNNNN
595011 TATTTAG
1 TATTTAG
595018 TATTTAG
1 TATTTAG
595025 TATTTAG
1 TATTTAG
595032 TATTTAG
1 TATTTAG
595039 TATTTAG
1 TATTTAG
595046 TATT
1 TATT
595050 ATGTATATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (7 bp):
TATTTAG
Done.