Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4233

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 337

Length: 563
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33


Found at i:239 original size:31 final size:31

Alignment explanation


    Indices: 198--272  Score: 80
    Period size: 31  Copynumber: 2.4  Consensus size: 31

        188 TAGATTTGAA

                *              *            
        198 TATGACATATTTAAGACATGT-ATTATATTAT
          1 TATGTCATATTTAAGACATCTAATTATATT-T

               * *      * *                
        229 TATTTTATATTTTATACATCTAATTATATTT
          1 TATGTCATATTTAAGACATCTAATTATATTT

                         
        260 TATGTCATATTTA
          1 TATGTCATATTTA

        273 CATTTATAAC


Statistics
Matches: 34,  Mismatches: 9, Indels: 2
        0.76            0.20        0.04

Matches are distributed among these distances:
  31   26  0.76
  32    8  0.24

ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53


Consensus pattern (31 bp):   
TATGTCATATTTAAGACATCTAATTATATTT
Done.