Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold499
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131673
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.31
Warning! 3921 characters in sequence are not A, C, G, or T
Found at i:178 original size:21 final size:21
Alignment explanation
Indices: 154--204 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
144 CTACAACTTA
* *
154 AAGCAGATGCGGCAACGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
175 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAACGAGAG
*
196 AAGCTGAGG
1 AAGCAGAGG
205 TTCAACGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.41, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACGAGAG
Found at i:241 original size:87 final size:87
Alignment explanation
Indices: 88--280 Score: 246
Period size: 87 Copynumber: 2.2 Consensus size: 87
78 ACATAACTAA
* * * *
88 AAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTT
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAACTACAACTT
*
153 AAAGCAGATGCGGCAACGAGAG
66 AAAGCAGATGCAGCAACGAGAG
* * * *
175 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAG-TATGAAGAACTCTAAC-AGTAGC
1 AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAACTA-CAAC
* *
238 TTAAAGTAGATGCAGCAGCGAGAG
64 TTAAAGCAGATGCAGCAACGAGAG
*
262 AAGCAGAGGCTGCAGCGAG
1 AAGCAGAGGCAGCAGCGAG
281 GGAATCAGAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
86 1 0.01
87 87 0.95
88 4 0.04
ACGTcount: A:0.39, C:0.18, G:0.31, T:0.12
Consensus pattern (87 bp):
AAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAACTACAACTT
AAAGCAGATGCAGCAACGAGAG
Found at i:277 original size:21 final size:21
Alignment explanation
Indices: 252--293 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
242 AGTAGATGCA
252 GCAGCGAGAGAAGCAGAGGCT
1 GCAGCGAGAGAAGCAGAGGCT
* *
273 GCAGCGAGGGAATCAGAGGCT
1 GCAGCGAGAGAAGCAGAGGCT
294 AAAATGAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.43, T:0.07
Consensus pattern (21 bp):
GCAGCGAGAGAAGCAGAGGCT
Found at i:312 original size:87 final size:87
Alignment explanation
Indices: 150--312 Score: 193
Period size: 87 Copynumber: 1.9 Consensus size: 87
140 CCAGCTACAA
* * **
150 CTTAAAGCAGATGCGGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAA
1 CTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGAAGCAGAGGTAAAACGAAA
* *
215 GTATGAAGAACTCTAACAGTAG
66 GGAAGAAGAACTCTAACAGTAG
* * * * * *
237 CTTAAAGTAGATGCAGCAGCGAGAGAAGCAGAGGCTGCAGCGAGGGAATCAGAGGCTAAAATG-A
1 CTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGAAGCAGAGG-TAAAACGAA
*
301 AGGAAGCAGAAC
65 AGGAAGAAGAAC
313 AGCTTAAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
87 58 0.94
88 4 0.06
ACGTcount: A:0.39, C:0.17, G:0.33, T:0.12
Consensus pattern (87 bp):
CTTAAAGCAGATGCAGCAACGAGAGAAGCAGAGGCAGCAGCGAGAGAAGCAGAGGTAAAACGAAA
GGAAGAAGAACTCTAACAGTAG
Found at i:933 original size:84 final size:84
Alignment explanation
Indices: 616--1108 Score: 400
Period size: 84 Copynumber: 5.8 Consensus size: 84
606 CAAAATTAGC
* * * * * * *
616 GGCGTTTATTGGATAAGCGCCACTAAAGAACCCG-CCTCTAGTGGCGTTTTATGCATAAGCGCCG
1 GGCGTTTTTTGTATAAGCGCCGCTAAAGAA-CCGATCTATAGTGGCGTTTTTTGTATAAGCGCCG
* * * *
680 CTAAAGCCACCAATCTCTAGT
65 CTATAG-AACCGATCTATAGT
* * * *
701 GGCGTTTTGTGTATAAGCGCCGC-AAAAAACTCCAATCTATAGTGGCGTTTTTTTGCATAAGCGC
1 GGCGTTTTTTGTATAAGCGCCGCTAAAGAA--CCGATCTATAGTGGCG-TTTTTTGTATAAGCGC
* * * *
765 CGGTATAGAGCCATATCTGTAGT
63 CGCTATAGAACC-GATCTATAGT
* * ** *
788 GGCGTTTCTT-TATAAGCGCCGATAAAGAAACATATCTATAGTGGTGTTTTTTGTATAAGCGCCG
1 GGCGTTTTTTGTATAAGCGCCGCTAAAG-AACCGATCTATAGTGGCGTTTTTTGTATAAGCGCCG
* *
852 CTATAGAACCGAGCTATCGT
65 CTATAGAACCGATCTATAGT
* * *
872 GGCATTTTTTGTATAAGCGCCGCTATAGAACCGAGCTATAGTGGCGTTTTTTGTATAAGCGCCGC
1 GGCGTTTTTTGTATAAGCGCCGCTAAAGAACCGATCTATAGTGGCGTTTTTTGTATAAGCGCCGC
*
937 TATAGACCCGATCTATAGT
66 TATAGAACCGATCTATAGT
* * * * *** * * * * *
956 GCCGTTTTTTGTATAAGCGCCGGTAGAGCAGATATCTATTGTGGCGTTTTCTGTACAAACGCCGG
1 GGCGTTTTTTGTATAAGCGCCGCTAAAGAACCGATCTATAGTGGCGTTTTTTGTATAAGCGCCGC
* *
1021 TAAAGAAACCCGATCTGTAGT
66 TATAG-AA-CCGATCTATAGT
* * * * * * * *
1042 GGCATTTTTTGCATAAGCGCCGCGAAAGACTCCCACCTATAGTGGCG-TTTCTGTGTAAGCGCCG
1 GGCGTTTTTTGTATAAGCGCCGCTAAAGA-ACCGATCTATAGTGGCGTTTTTTGTATAAGCGCCG
1106 CTA
65 CTA
1109 AAGACGGTAT
Statistics
Matches: 323, Mismatches: 75, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
84 123 0.38
85 62 0.19
86 85 0.26
87 51 0.16
88 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (84 bp):
GGCGTTTTTTGTATAAGCGCCGCTAAAGAACCGATCTATAGTGGCGTTTTTTGTATAAGCGCCGC
TATAGAACCGATCTATAGT
Found at i:1113 original size:42 final size:42
Alignment explanation
Indices: 616--1113 Score: 344
Period size: 42 Copynumber: 11.7 Consensus size: 42
606 CAAAATTAGC
* * ** *
616 GGCGTTTATTGGATAAGCGCCACTAAAGA-ACCCGCCTCTAGT
1 GGCGTTT-TTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * *
658 GGCGTTTTATGCATAAGCGCCGCTAAAGCCACCAATCTCTAGT
1 GGCGTTTT-TGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * *
701 GGCGTTTTGTGTATAAGCGCCGCAAAAAACTCCAATCTATAGT
1 GGCGTTTT-TGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * ** *
744 GGCGTTTTTTTGCATAAGCGCCGGTATAGAGC-CATATCTGTAGT
1 GGCG--TTTTTGTATAAGCGCCGCTAAAGA-CACCCATCTATAGT
* * **
788 GGCGTTTCTT-TATAAGCGCCGATAAAGAAACATATCTATAGT
1 GGCGTTT-TTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * * *
830 GGTGTTTTTTGTATAAGCGCCGCTATAGA-ACCGAGCTATCGT
1 GGCG-TTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * *
872 GGCATTTTTTGTATAAGCGCCGCTATAGA-ACCGAGCTATAGT
1 GGC-GTTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* *
914 GGCGTTTTTTGTATAAGCGCCGCTATAGAC-CCGATCTATAGT
1 GGCG-TTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * *** *
956 GCCGTTTTTTGTATAAGCGCCGGTAGAG-CAGATATCTATTGT
1 GGCG-TTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* * * * *
998 GGCGTTTTCTGTACAAACGCCGGTAAAGAAACCCGATCTGTAGT
1 GGCGTTTT-TGTATAAGCGCCGCTAAAGACACCC-ATCTATAGT
* * * * *
1042 GGCATTTTTTGCATAAGCGCCGCGAAAGACTCCCACCTATAGT
1 GGC-GTTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
* *
1085 GGCGTTTCTGTGTAAGCGCCGCTAAAGAC
1 GGCGTTTTTGTATAAGCGCCGCTAAAGAC
1114 GGTATTCTAT
Statistics
Matches: 369, Mismatches: 70, Indels: 34
0.78 0.15 0.07
Matches are distributed among these distances:
41 6 0.02
42 216 0.59
43 82 0.22
44 56 0.15
45 9 0.02
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (42 bp):
GGCGTTTTTGTATAAGCGCCGCTAAAGACACCCATCTATAGT
Found at i:1450 original size:223 final size:223
Alignment explanation
Indices: 1062--1507 Score: 838
Period size: 223 Copynumber: 2.0 Consensus size: 223
1052 GCATAAGCGC
1062 CGCGAAAGACTCCCACCTATAGTGGCGTTTCTGTGTAAGCGCCGCTAAAGACGGTATTCTATAGT
1 CGCGAAAGACTCCCACCTATAGTGGCGTTTCTGTGTAAGCGCCGCTAAAGACGGTATTCTATAGT
* *
1127 GGCACGATAAAAGAAACGTCGTAGAAGGTCTTTATCTTTTGCGGCGTTTATTACAAAAAGCGACG
66 GGCACGATAAAAGAAACGCCGTAGAAGGTCTTTATCTTTTGCGGCGTTTATTACAAAAAGCAACG
*
1192 CTAAAGTTAGCGACGTAGGCAGTAGCGGCGTTTTTTGCGGCGCTTATCGAAGCGCCGGTAAAAGT
131 CTAAAGTTAGCGACGCAGGCAGTAGCGGCGTTTTTTGCGGCGCTTATCGAAGCGCCGGTAAAAGT
1257 ATTTGCGGCGCTAAAAAACGCCGCTATA
196 ATTTGCGGCGCTAAAAAACGCCGCTATA
1285 CGCGAAAGACTCCCACCTATAGTGGCGTTTCTGTGTAAGCGCCGCTAAAGACGGTATTCTATAGT
1 CGCGAAAGACTCCCACCTATAGTGGCGTTTCTGTGTAAGCGCCGCTAAAGACGGTATTCTATAGT
*
1350 GGCGCGATAAAAGAAACGCCGTAGAAGGTCTTTATCTTTTGCGGCGTTTATTACAAAAAGCAACG
66 GGCACGATAAAAGAAACGCCGTAGAAGGTCTTTATCTTTTGCGGCGTTTATTACAAAAAGCAACG
*
1415 CTAAAGTTAGCGACGCAGGCAGTAGTGGCGTTTTTTGCGGCGCTTATCGAAGCGCCGGTAAAAGT
131 CTAAAGTTAGCGACGCAGGCAGTAGCGGCGTTTTTTGCGGCGCTTATCGAAGCGCCGGTAAAAGT
*
1480 ATTTGCGGCGCTAAAAAATGCCGCTATA
196 ATTTGCGGCGCTAAAAAACGCCGCTATA
1508 GCCCTGAAAA
Statistics
Matches: 217, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
223 217 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (223 bp):
CGCGAAAGACTCCCACCTATAGTGGCGTTTCTGTGTAAGCGCCGCTAAAGACGGTATTCTATAGT
GGCACGATAAAAGAAACGCCGTAGAAGGTCTTTATCTTTTGCGGCGTTTATTACAAAAAGCAACG
CTAAAGTTAGCGACGCAGGCAGTAGCGGCGTTTTTTGCGGCGCTTATCGAAGCGCCGGTAAAAGT
ATTTGCGGCGCTAAAAAACGCCGCTATA
Found at i:2718 original size:16 final size:16
Alignment explanation
Indices: 2673--2725 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
2663 TTTTATTCGC
*
2673 TTTTTGAAAAATAAATT
1 TTTTTGTAAAAT-AATT
*
2690 TTTTTGTTCAAATAATT
1 TTTTTG-TAAAATAATT
*
2707 TTTTTGTAAAATTATT
1 TTTTTGTAAAATAATT
2723 TTT
1 TTT
2726 CGAAAAAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 11 0.35
17 16 0.52
18 4 0.13
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTTTGTAAAATAATT
Found at i:11276 original size:79 final size:79
Alignment explanation
Indices: 11157--11317 Score: 295
Period size: 79 Copynumber: 2.0 Consensus size: 79
11147 TGACTTTTTC
11157 TCCCAATTTCTTTTTTTGGTTTTATTTCTTTTTCTAGAGTTCCCGTAACTTGCATTTTATCACTT
1 TCCCAATTTCTTTTTTTGGTTTTATTTCTTTTTCTAGAGTTCCCGTAACTTGCATTTTATCACTT
*
11222 CCTTTTCCCTCTTT
66 CCTTTTCCCTCTCT
* *
11236 TCCCAATTTCTTTTTTTGGTTTTATTTCTTTTTCTTGAGTTCCCGTAATTTGCATTTTATCACTT
1 TCCCAATTTCTTTTTTTGGTTTTATTTCTTTTTCTAGAGTTCCCGTAACTTGCATTTTATCACTT
11301 CCTTTTCCCTCTCT
66 CCTTTTCCCTCTCT
11315 TCC
1 TCC
11318 AAATATACAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.12, C:0.25, G:0.07, T:0.56
Consensus pattern (79 bp):
TCCCAATTTCTTTTTTTGGTTTTATTTCTTTTTCTAGAGTTCCCGTAACTTGCATTTTATCACTT
CCTTTTCCCTCTCT
Found at i:11797 original size:2 final size:2
Alignment explanation
Indices: 11790--11816 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11780 CAGAGTTAAT
11790 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11817 TTTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12565 original size:17 final size:16
Alignment explanation
Indices: 12539--12575 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
12529 TCTTAACTTT
12539 TCTT-TATTTTCCATTC
1 TCTTCTATTTTCC-TTC
12555 TCTTCTATTTTCCTTC
1 TCTTCTATTTTCCTTC
12571 -CTTCT
1 TCTTCT
12576 TCATTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
16 7 0.35
17 8 0.40
ACGTcount: A:0.08, C:0.30, G:0.00, T:0.62
Consensus pattern (16 bp):
TCTTCTATTTTCCTTC
Found at i:14959 original size:3 final size:3
Alignment explanation
Indices: 14953--14991 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14943 TTTCTTAGTT
14953 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14992 ATTTAATGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16031 original size:2 final size:2
Alignment explanation
Indices: 16024--16059 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
16014 CATCACGTGT
16024 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16060 AGCATATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20306 original size:26 final size:28
Alignment explanation
Indices: 20257--20309 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
20247 TTATGCCATT
20257 TAATCATAAGCTAAAGTATGTCATTTCC
1 TAATCATAAGCTAAAGTATGTCATTTCC
20285 TAATCAT-AGC-AAAGT-TGATCATTTC
1 TAATCATAAGCTAAAGTATG-TCATTTC
20310 ATAACCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 12 0.50
27 3 0.12
28 7 0.29
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (28 bp):
TAATCATAAGCTAAAGTATGTCATTTCC
Found at i:25929 original size:22 final size:21
Alignment explanation
Indices: 25882--25929 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
25872 TTTTTACTTT
*
25882 TAAAAAATATATAATATGAAA
1 TAAAAAATATATAAAATGAAA
* *
25903 TAAAAAATAATTTAAAATGGAA
1 TAAAAAAT-ATATAAAATGAAA
25925 -AAAAA
1 TAAAAA
25930 TCCACTACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (21 bp):
TAAAAAATATATAAAATGAAA
Found at i:44549 original size:23 final size:24
Alignment explanation
Indices: 44522--44572 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
44512 TGATTTAAAC
* * *
44522 AAATATTTATA-TTTATATTATTA
1 AAATATTCATATTTTATACTATAA
44545 AAATATTCATATTTTATACTATAA
1 AAATATTCATATTTTATACTATAA
44569 AAAT
1 AAAT
44573 CAAATTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
AAATATTCATATTTTATACTATAA
Found at i:53642 original size:4 final size:4
Alignment explanation
Indices: 53633--53670 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
53623 TGTTTATCAC
*
53633 GTAT GTAT GTAT GTAT GTAT GTAT GCAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
53671 GCAGGAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.24, C:0.03, G:0.26, T:0.47
Consensus pattern (4 bp):
GTAT
Found at i:66670 original size:41 final size:41
Alignment explanation
Indices: 66612--66755 Score: 234
Period size: 41 Copynumber: 3.5 Consensus size: 41
66602 TGATTCGATA
* * * *
66612 CACCGGCATTAACCCTGCTAGATGTAAGGTTTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
66653 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
*
66694 CACCGGCATTAAGCCTGCTAGACGGAAAGTCTGAAATATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
*
66735 CACAGGCATTAAGCCTGCTAG
1 CACCGGCATTAAGCCTGCTAG
66756 GCACAAAGCC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
Found at i:67016 original size:62 final size:67
Alignment explanation
Indices: 66893--67057 Score: 180
Period size: 64 Copynumber: 2.5 Consensus size: 67
66883 ACATTCTAAC
* * * * * *
66893 ATATATGTATAATTCAAAACTTTAACTTCAGCTCAAGGAATTTGTAACTAATATTCAAA-C-CAC
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTAATATTCAAACCACAC
66956 AT
66 AT
* *
66958 ATGTATATAAAATTCAT-ACATTAAATTCAGCTCAA-GAACTTG-AA-TATATATTCGAACCACA
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTA-ATATTCAAACCACA
67019 CAT
65 CAT
* * *
67022 ATATATATGAAATTCATAATATTAAGTTCAGCTCAA
1 ATATATATAAAATTCATAACATTAAATTCAGCTCAA
67058 TAATACTTGT
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
61 2 0.02
62 10 0.12
63 7 0.08
64 36 0.43
65 29 0.35
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (67 bp):
ATATATATAAAATTCATAACATTAAATTCAGCTCAAGGAACTTGTAACTAATATTCAAACCACAC
AT
Found at i:68518 original size:46 final size:47
Alignment explanation
Indices: 68450--68549 Score: 166
Period size: 46 Copynumber: 2.1 Consensus size: 47
68440 AAACAAGATT
*
68450 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATG-TGG
1 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
* *
68496 ATATGTGTTGTGAAAGGTTAAGTGTGTGATGTGATTATATATGTTGA
1 ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
68543 ATATGTG
1 ATATGTG
68550 ACTAAATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
46 41 0.82
47 9 0.18
ACGTcount: A:0.28, C:0.01, G:0.30, T:0.41
Consensus pattern (47 bp):
ATATGTGTTATGAAAGGCTAAGTGTGTGATGTGATTATATATGTTGA
Found at i:68671 original size:18 final size:18
Alignment explanation
Indices: 68648--68683 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
68638 GTAGTGTAGT
68648 ATATGAA-AGTGATAAGTG
1 ATATGAACA-TGATAAGTG
68666 ATATGAACATGATAAGTG
1 ATATGAACATGATAAGTG
68684 TGAGTGTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.28
Consensus pattern (18 bp):
ATATGAACATGATAAGTG
Found at i:71544 original size:23 final size:23
Alignment explanation
Indices: 71504--71549 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71494 AAAAACCCTA
* *
71504 ACTCTAATCGCCGTTGCTCCTCT
1 ACTCTAACCGCCGCTGCTCCTCT
*
71527 ACTCTAACCGTCGCTGCTCCTCT
1 ACTCTAACCGCCGCTGCTCCTCT
71550 GCTTCACCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.41, G:0.13, T:0.33
Consensus pattern (23 bp):
ACTCTAACCGCCGCTGCTCCTCT
Found at i:74032 original size:18 final size:19
Alignment explanation
Indices: 74009--74044 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73999 AATTTAATTT
*
74009 AAAAAT-AATCTTTTTATA
1 AAAAATCAAACTTTTTATA
74027 AAAAATCAAACTTTTTAT
1 AAAAATCAAACTTTTTAT
74045 TAAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAAATCAAACTTTTTATA
Found at i:76160 original size:19 final size:17
Alignment explanation
Indices: 76132--76167 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
76122 AATAAATCAC
76132 TAAAAAATTATAAAAAAA
1 TAAAAAATTA-AAAAAAA
76150 TAAAAATATTAAAAAAAA
1 TAAAAA-ATTAAAAAAAA
76168 ACAGCTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
TAAAAAATTAAAAAAAA
Found at i:76163 original size:16 final size:17
Alignment explanation
Indices: 76134--76166 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76124 TAAATCACTA
76134 AAAAATTATAAAAAAAT
1 AAAAATTATAAAAAAAT
76151 AAAAA-TATTAAAAAAA
1 AAAAATTA-TAAAAAAA
76167 AACAGCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATTATAAAAAAAT
Found at i:76168 original size:19 final size:18
Alignment explanation
Indices: 76132--76168 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
76122 AATAAATCAC
*
76132 TAAAAAATTATAAAAAAA
1 TAAAAAATTAAAAAAAAA
76150 TAAAAATATTAAAAAAAAA
1 TAAAAA-ATTAAAAAAAAA
76169 CAGCTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
TAAAAAATTAAAAAAAAA
Found at i:76265 original size:39 final size:39
Alignment explanation
Indices: 76211--76290 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
76201 GTCCGTATCG
*
76211 GTTTGTGGGTTAACCAGTCTGATGCCTTTCTTCAAATCA
1 GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
76250 GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
1 GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
76289 GT
1 GT
76291 ACCCTAGCCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (39 bp):
GTTTGTGGGTTAACCAGTCTGATGCCTCTCTTCAAATCA
Found at i:76636 original size:115 final size:115
Alignment explanation
Indices: 76515--76735 Score: 442
Period size: 115 Copynumber: 1.9 Consensus size: 115
76505 AAATTAGGTT
76515 AGAAATTAAATTAAAAGAGTTTTAAATTTAAGCAGAGATGAAAATTAAAAATTAATCATTTTTAT
1 AGAAATTAAATTAAAAGAGTTTTAAATTTAAGCAGAGATGAAAATTAAAAATTAATCATTTTTAT
76580 AAAATGCAAAAAGATAATAAAAAGAGCGTGGGTGTCGTCGAATAAATTAG
66 AAAATGCAAAAAGATAATAAAAAGAGCGTGGGTGTCGTCGAATAAATTAG
76630 AGAAATTAAATTAAAAGAGTTTTAAATTTAAGCAGAGATGAAAATTAAAAATTAATCATTTTTAT
1 AGAAATTAAATTAAAAGAGTTTTAAATTTAAGCAGAGATGAAAATTAAAAATTAATCATTTTTAT
76695 AAAATGCAAAAAGATAATAAAAAGAGCGTGGGTGTCGTCGA
66 AAAATGCAAAAAGATAATAAAAAGAGCGTGGGTGTCGTCGA
76736 CAAGGAGGAA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 106 1.00
ACGTcount: A:0.49, C:0.05, G:0.17, T:0.29
Consensus pattern (115 bp):
AGAAATTAAATTAAAAGAGTTTTAAATTTAAGCAGAGATGAAAATTAAAAATTAATCATTTTTAT
AAAATGCAAAAAGATAATAAAAAGAGCGTGGGTGTCGTCGAATAAATTAG
Found at i:79078 original size:23 final size:22
Alignment explanation
Indices: 79034--79083 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
79024 ATATATAACC
79034 TAACCCAAAACCTTAAAACCCAA
1 TAACCCAAAACCTTAAAACCC-A
* *
79057 TAACCCAAAGCC-TAATAGCCCA
1 TAACCCAAAACCTTAA-AACCCA
79079 TAACC
1 TAACC
79084 TAAACTATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.46, C:0.36, G:0.04, T:0.14
Consensus pattern (22 bp):
TAACCCAAAACCTTAAAACCCA
Found at i:80754 original size:4 final size:5
Alignment explanation
Indices: 80717--80743 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
80707 AGCATAGTAT
80717 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
80744 GATTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:81731 original size:41 final size:41
Alignment explanation
Indices: 81674--81754 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
81664 TTTTCTTACC
81674 TTTCGGGGCTTTAGCGGCGATTTCAAAAAAGCGCCGCTAAT
1 TTTCGGGGCTTTAGCGGCGATTTCAAAAAAGCGCCGCTAAT
* **
81715 TTTCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TTTCGGGGCTTTAGCGGCGATTTCAAAAAAGCGCCGCTAA
81755 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (41 bp):
TTTCGGGGCTTTAGCGGCGATTTCAAAAAAGCGCCGCTAAT
Found at i:81968 original size:14 final size:15
Alignment explanation
Indices: 81934--81971 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
81924 ACTATTTTAA
81934 GGTTTAAGGAGTATG
1 GGTTTAAGGAGTATG
* *
81949 GGTTTAGGGATTAT-
1 GGTTTAAGGAGTATG
81963 GGTTTAAGG
1 GGTTTAAGG
81972 GTTGAGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (15 bp):
GGTTTAAGGAGTATG
Found at i:82251 original size:15 final size:14
Alignment explanation
Indices: 82231--82279 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
82221 CATATTTTAA
*
82231 GGTTTAGGGAGTAT
1 GGTTTAGGGATTAT
82245 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
*
82260 GGATTAGGGATTAT
1 GGTTTAGGGATTAT
82274 GGTTTA
1 GGTTTA
82280 AGGGTTGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:82343 original size:7 final size:7
Alignment explanation
Indices: 82226--82370 Score: 50
Period size: 7 Copynumber: 20.7 Consensus size: 7
82216 GAGTTCATAT
*
82226 TTTAAGG
1 TTTAGGG
82233 TTTAGGG
1 TTTAGGG
**
82240 AGTATGGG
1 TTTA-GGG
82248 TTTAGGG
1 TTTAGGG
* *
82255 ATTATGG
1 TTTAGGG
*
82262 ATTAGGG
1 TTTAGGG
* *
82269 ATTATGG
1 TTTAGGG
82276 TTTAAGGG
1 TTT-AGGG
* *
82284 TTGA-GA
1 TTTAGGG
*
82290 TTTAAGG
1 TTTAGGG
82297 TTTAGGAG
1 TTTAGG-G
82305 -TTAGGG
1 TTTAGGG
*
82311 GTTAGGGG
1 TTTA-GGG
* **
82319 TTAATAG
1 TTTAGGG
82326 -TTAGGG
1 TTTAGGG
82332 ATTTAGGG
1 -TTTAGGG
*
82340 TTTAGGA
1 TTTAGGG
82347 TTTAAGGG
1 TTT-AGGG
82355 -TT-GGG
1 TTTAGGG
82360 -TTAGGG
1 TTTAGGG
82366 TTTAG
1 TTTAG
82371 ATTAATTAGT
Statistics
Matches: 102, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
5 5 0.05
6 11 0.11
7 61 0.60
8 25 0.25
ACGTcount: A:0.23, C:0.00, G:0.39, T:0.38
Consensus pattern (7 bp):
TTTAGGG
Found at i:92325 original size:85 final size:86
Alignment explanation
Indices: 92176--92487 Score: 328
Period size: 85 Copynumber: 3.7 Consensus size: 86
92166 GATATGTTTT
* ** * * * * *
92176 TAGCGGCGTTTGTGTGAAAAGCGTAGCTAAAGGTC-TGTTCTATAGCGGCGTTTGTAAGAAAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTAT-GGGAAAAG
* *
92240 CGTCGCTAAAGA-TC-TGTTCTA
65 CGCCGCTAAA-ACTCATGATCTA
* * *
92261 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTGATGATCTATAGCGGCGTTTATGGGGAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTATGGGAAAAGC
*
92326 GCCGCTAAAAGTCATGATCTA
66 GCCGCTAAAACTCATGATCTA
* * * * *
92347 TAGCGACGTTTGT-GGATAAGCGCCACTAAAAGTCATGATCTTTAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTATGGGAAAAGC
* *
92411 GCCGCTAAAACTCATGACCTT
66 GCCGCTAAAACTCATGATCTA
* * * * *
92432 TAGCTGTGTTTGTGGGAAAATCGCCGCTAAAGGTCATGA-CTTTTAGCGGCGTTTAT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATC-TATAGCGGCGTTTAT
92488 TTCTAAAAAC
Statistics
Matches: 190, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
84 1 0.01
85 119 0.63
86 70 0.37
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (86 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTATGGGAAAAGC
GCCGCTAAAACTCATGATCTA
Found at i:92426 original size:43 final size:43
Alignment explanation
Indices: 92176--92485 Score: 333
Period size: 43 Copynumber: 7.3 Consensus size: 43
92166 GATATGTTTT
* ** * *
92176 TAGCGGCGTTTGTGTGAAAAGCGTAGCTAAAGGTC-TGTTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * *
92218 TAGCGGCGTTTGTAAGAAAAAGCGTCGCT-AAAGATC-TGTTCTA
1 TAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAAG-TCATGATCTA
* *
92261 TAGCGGCATTTGTGGGAAAAGCGCCGCTAAAAGTGATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* *
92304 TAGCGGCGTTTATGGGGAAAGCGCCGCTAAAAGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * *
92347 TAGCGACGTTTGT-GGATAAGCGCCACTAAAAGTCATGATCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * *
92389 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAACTCATGACCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
* * * * *
92432 TAGCTGTGTTTGTGGGAAAATCGCCGCTAAAGGTCATGA-CTTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATC-TA
92475 TAGCGGCGTTT
1 TAGCGGCGTTT
92486 ATTTCTAAAA
Statistics
Matches: 229, Mismatches: 33, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
42 67 0.29
43 162 0.71
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGATCTA
Found at i:100057 original size:32 final size:32
Alignment explanation
Indices: 100016--100079 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
100006 TAGCTCAAAG
100016 GATAATTTCTCGTTACCTCACATTGATACCTT
1 GATAATTTCTCGTTACCTCACATTGATACCTT
100048 GATAATTTCTCGTTACCTCACATTGATACCTT
1 GATAATTTCTCGTTACCTCACATTGATACCTT
100080 AGTGGACAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.41
Consensus pattern (32 bp):
GATAATTTCTCGTTACCTCACATTGATACCTT
Found at i:104016 original size:45 final size:45
Alignment explanation
Indices: 103914--104355 Score: 335
Period size: 45 Copynumber: 9.7 Consensus size: 45
103904 AGCTACAACA
* * *
103914 ACAAATCTTATTTCCTTGAAGTTGCAGTGGAGT-AGATTAAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
103958 ACAAAT-TTGATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
1 ACAAATCTT-ATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* *
104003 ACAAATCTTATCTCCTTAAAGTTGCAGTGGAGTAAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * *
104048 ACAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * * * * *
104093 GCAAATATAATCTCCCTAAAGTTGTAGTGGAG-CAGATTGAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * * ** * *
104137 ACAAATCCTATAC-CTCTGAAGTTGCATTGG-GTTGGATTAAATCT
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * *
104181 ACCATAGTGAGTCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAA-AGTTACAAACT
1 A-CA-A---A-TCTTATCTCCCTGAAGTTGCAGTGG---AG--TAAGA-TT-GAAGCT
* * * *
104238 ACAAATCTTATCTCCTTGAAGTTGCAATGGAG-CAGATTAAAGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
** ** ** *
104282 ATGAATCTTATCTTTCTGAAGTTGCAGCAGAGT-AGATTGAAACT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
* * *
104326 ACAATTCCTATAC-CCCTAAAGTTGCAGTGG
1 ACAAATCTTAT-CTCCCTGAAGTTGCAGTGG
104356 GTTAGAATGA
Statistics
Matches: 318, Mismatches: 57, Indels: 46
0.76 0.14 0.11
Matches are distributed among these distances:
43 3 0.01
44 124 0.39
45 128 0.40
46 4 0.01
48 2 0.01
49 1 0.00
50 20 0.06
51 22 0.07
52 1 0.00
54 1 0.00
55 2 0.01
56 5 0.02
57 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (45 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATTGAAGCT
Found at i:106114 original size:3 final size:3
Alignment explanation
Indices: 106106--106140 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
106096 TTATACTTCC
*
106106 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
106141 TCATTATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:106126 original size:15 final size:15
Alignment explanation
Indices: 106106--106162 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
106096 TTATACTTCC
106106 TTATTATTATTATTG
1 TTATTATTATTATTG
*
106121 TTATTATTATTATTA
1 TTATTATTATTATTG
106136 TTATTTCATTATTCA-TG
1 TTA-TT-ATTATT-ATTG
*
106153 TTAATATTAT
1 TTATTATTAT
106163 GATAGTAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 22 0.61
16 3 0.08
17 10 0.28
18 1 0.03
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (15 bp):
TTATTATTATTATTG
Found at i:106248 original size:96 final size:97
Alignment explanation
Indices: 106121--106326 Score: 396
Period size: 96 Copynumber: 2.1 Consensus size: 97
106111 ATTATTATTG
106121 TTATTATTATTATTATTATTTCATTATTCATGTTAATATTATGATAGTAACTATAATATAATTCT
1 TTATTATTATTATTATTATTTCATTATTCATGTTAATATTATGATAGTAACTATAATATAATTCT
106186 CGCTATTATTACTATAAATTGTTGTTTTTTTA
66 CGCTATTATTACTATAAATTGTTGTTTTTTTA
106218 TTATTATTATTATT-TTATTTCATTATTCATGTTAATATTATGATAGTAACTATAATATAATTCT
1 TTATTATTATTATTATTATTTCATTATTCATGTTAATATTATGATAGTAACTATAATATAATTCT
106282 CGCTATTATTACTATAAATTGTTGTTTTTTTA
66 CGCTATTATTACTATAAATTGTTGTTTTTTTA
*
106314 TTATTATCATTAT
1 TTATTATTATTAT
106327 AGTTGTATTA
Statistics
Matches: 108, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
96 94 0.87
97 14 0.13
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (97 bp):
TTATTATTATTATTATTATTTCATTATTCATGTTAATATTATGATAGTAACTATAATATAATTCT
CGCTATTATTACTATAAATTGTTGTTTTTTTA
Found at i:111027 original size:19 final size:19
Alignment explanation
Indices: 111005--111069 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
110995 TTTTTTCTTT
111005 GTATATTTTTCTTTTATTA
1 GTATATTTTTCTTTTATTA
*
111024 GTATATTTTTCTTTTTTTA
1 GTATATTTTTCTTTTATTA
*
111043 --AT-TTTTTATTTTCATTA
1 GTATATTTTTCTTTT-ATTA
*
111060 GTTTATTTTT
1 GTATATTTTT
111070 TTAGTACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 9 0.24
17 5 0.13
19 19 0.50
20 5 0.13
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (19 bp):
GTATATTTTTCTTTTATTA
Found at i:111031 original size:36 final size:35
Alignment explanation
Indices: 110991--111071 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 35
110981 TTATTGCTAT
*
110991 TATTTTTTTTCTTTGT-ATATTTTTCTTTT-ATTAGTA
1 TATTTTTTTT-TTT-TAAT-TTTTTATTTTCATTAGTA
*
111027 TATTTTTCTTTTTTTAATTTTTTATTTTCATTAGTT
1 TATTTTT-TTTTTTTAATTTTTTATTTTCATTAGTA
111063 TATTTTTTT
1 TATTTTTTT
111072 AGTACATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
35 12 0.30
36 25 0.62
37 3 0.08
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (35 bp):
TATTTTTTTTTTTTAATTTTTTATTTTCATTAGTA
Found at i:118135 original size:24 final size:24
Alignment explanation
Indices: 118075--118135 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
118065 TTTATGTCCT
*
118075 AAAATTTCAGTGGATTGAACCTTG
1 AAAATTACAGTGGATTGAACCTTG
* *
118099 AAGATTATAGTGGATTGAACCTTG
1 AAAATTACAGTGGATTGAACCTTG
*
118123 AAAATTACGGTGG
1 AAAATTACAGTGG
118136 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (24 bp):
AAAATTACAGTGGATTGAACCTTG
Found at i:118549 original size:88 final size:88
Alignment explanation
Indices: 118440--118723 Score: 406
Period size: 88 Copynumber: 3.2 Consensus size: 88
118430 ATGGATTGAA
* * * *
118440 GAAGATTGTAGATATTGTCTTCCTGTACTGGCAGTGAAGCAGATTGAAAACACTAGCCTTATCTC
1 GAAGATTGTAGATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
118505 CCTGAGCAGCAATGGAGTAGGTT
66 CCTGAGCAGCAATGGAGTAGGTT
* * * *
118528 GAAAATTGTAGATCTTGTCTTCTTGTACTGGCAATGAAGCAGATCGAAAACACCAACTTTATCTC
1 GAAGATTGTAGATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
* * * *
118593 CCTGAGCAGTAGTAGAGTCGGTT
66 CCTGAGCAGCAATGGAGTAGGTT
* * *
118616 GAAGACTATAAATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
1 GAAGATTGTAGATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
*
118681 CTTGAGCAGCAATGGAGTAGGTT
66 CCTGAGCAGCAATGGAGTAGGTT
* *
118704 GAAGATTGCAGATCATGTCT
1 GAAGATTGTAGATCTTGTCT
118724 CCCTAAGCAG
Statistics
Matches: 167, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 167 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (88 bp):
GAAGATTGTAGATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAAAACACCAGCCTTATCTC
CCTGAGCAGCAATGGAGTAGGTT
Found at i:119320 original size:132 final size:132
Alignment explanation
Indices: 118666--119298 Score: 883
Period size: 132 Copynumber: 4.8 Consensus size: 132
118656 AGATCGAAAA
* * * *
118666 CACCAG-CCTTATCTCCTTGAGCAGCAATGGAGTAGGTTGAAGATTGCAGATCATGTCTCCCTAA
1 CACCAGTCC-TATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAA
*
118730 GCAGTAGTGGAGCAGATCAAATACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
65 GCAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTA
118795 AGC
130 AGC
* * * *
118798 CACCAGTCCTATCTCCCTGAACAGCAGTAGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAG
* * * * * *
118863 AAGTAGTGGAGTAAATCAAAGACGGTGAATCTTATCTTTCCAATGTAGTAGGGAAGCAAATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
118928 GC
131 GC
* * *
118930 CATCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAAATCCTATCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAG
* ** * * *
118995 CAGTAGTGGAGCAGATCAAAGACAGTGAAAATTATCTTTCTAAGATAGTAGGGAAGCAGATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
*
119060 GT
131 GC
* * *
119062 CACCAGTCCTATCTTCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGTAGATCATGTCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAG
* * *
119127 CAATAGTGGAGTAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGTAGATTTAA
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
119192 GC
131 GC
* * * * *
119194 CACCAGTCCTATTTCTCTGAGCTGCAGTGGAGTAAGTTAAAGATTGTAGATCCTGTCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAG
* * * *
119259 TAGTAGTGGAGCAGACCAAAGACAGCGAATCTTAT-TTCCC
66 CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCC
119299 TAGCTTTGCA
Statistics
Matches: 441, Mismatches: 59, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
131 5 0.01
132 434 0.98
133 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
CACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAG
CAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
GC
Found at i:119515 original size:51 final size:51
Alignment explanation
Indices: 119380--119518 Score: 165
Period size: 51 Copynumber: 2.7 Consensus size: 51
119370 TTAAAACTGA
* * * * *
119380 AGTGGAGCGGATTAAAGCTGAAGGCAGGGAATCCTATTTCATTGGCGTTAC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCATTGGCATTAC
* * * *
119431 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTGTTTC-TCTGGCATTGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCAT-TGGCATTAC
119482 AGCT-GAACAGATTAAAGCTGAAGGCAGCGAATCTTAT
1 AG-TGGAACAGATTAAAGCTGAAGGCAGCGAATCTTAT
119519 CTCCCTGACG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
50 1 0.01
51 72 0.97
52 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (51 bp):
AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCATTGGCATTAC
Found at i:119674 original size:44 final size:43
Alignment explanation
Indices: 119578--119738 Score: 155
Period size: 44 Copynumber: 3.7 Consensus size: 43
119568 ACAGGCTACA
* * * **
119578 AATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGCCA-C
1 AATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGATACC
* *
119621 AAACGTTATCTTCCTGAAGTTGCAGTGGAGCA-AGTTGAAGATGCC
1 AATC-TTATC-TCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATACC
* * **
119666 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCTATT
1 AATCTTATCTCC-TGAAGTTGCAGTGGAGCAGATTGAAGATACC
119710 AATCTTATCTCTCTGAAGTTGCAGTGGAG
1 AATCTTATCTC-CTGAAGTTGCAGTGGAG
119739 TGGATTAAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
43 7 0.07
44 83 0.86
45 7 0.07
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (43 bp):
AATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAGATACC
Found at i:119727 original size:88 final size:88
Alignment explanation
Indices: 119578--119738 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
119568 ACAGGCTACA
119578 AATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGCCACAAACGTTATCTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGCCACAAACGTTATCTTCCTGAAGTTG
119643 CAGTGGAGCAAGTTGAAGATGCC
66 CAGTGGAGCAAGTTGAAGATGCC
* ** * * * * *
119666 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTGAAGCTATTAATC-TTATC-TCTCTGAAGT
1 AATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGCCA-CAAACGTTATCTTC-CTGAAGT
119729 TGCAGTGGAG
64 TGCAGTGGAG
119739 TGGATTAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 2 0.03
88 58 0.92
89 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTACAATGGAGCAGATTAAAGCCACAAACGTTATCTTCCTGAAGTTG
CAGTGGAGCAAGTTGAAGATGCC
Found at i:119758 original size:44 final size:44
Alignment explanation
Indices: 119578--119776 Score: 124
Period size: 44 Copynumber: 4.5 Consensus size: 44
119568 ACAGGCTACA
* * * ** *
119578 AATCTTATCTCCCTGAAGTTACAATGGAGCAGATT-AAAGCCA-C
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAA-ATATG
* * ***
119621 AAACGTTATCT-TCCTGAAGTTGCAGTGGAGCA-AGTTGAAGATGCC
1 AATC-TTATCTCT-CTGAAGTTGCAGTGGAGCAGA-TTGAAAATATG
* ** *
119666 AATCTTATCTC-CTTGAAGTTGTAGTGGAGCAGATTGAAGCTATT
1 AATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAAATATG
**
119710 AATCTTATCTCTCTGAAGTTGCAGTGGAGTGGATT-AAAATGATG
1 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAAT-ATG
*
119754 AATCTTATAC-CTCTGACGTTGCA
1 AATCTTAT-CTCTCTGAAGTTGCA
119777 ATAAGTCGGA
Statistics
Matches: 124, Mismatches: 21, Indels: 21
0.75 0.13 0.13
Matches are distributed among these distances:
43 8 0.06
44 107 0.86
45 9 0.07
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAATATG
Found at i:120174 original size:24 final size:24
Alignment explanation
Indices: 120138--120185 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
120128 CAATAAAAAA
*
120138 ACAACCCATATGGCCCAATATACT
1 ACAACCCATATGGCCCAAAATACT
120162 ACAAGCCCA-ATGGCCCAAAATACT
1 ACAA-CCCATATGGCCCAAAATACT
120186 TAAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.40, C:0.33, G:0.10, T:0.17
Consensus pattern (24 bp):
ACAACCCATATGGCCCAAAATACT
Found at i:122063 original size:35 final size:35
Alignment explanation
Indices: 122024--122092 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
122014 TATTTGAATC
122024 TTGTGGATAAAATCTTAGTTATTTTATTTTCTTTA
1 TTGTGGATAAAATCTTAGTTATTTTATTTTCTTTA
122059 TTGTGGATAAAATCTTAGTTATTTTATTTTCTTT
1 TTGTGGATAAAATCTTAGTTATTTTATTTTCTTT
122093 CTTTTGTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.06, G:0.12, T:0.58
Consensus pattern (35 bp):
TTGTGGATAAAATCTTAGTTATTTTATTTTCTTTA
Found at i:127306 original size:43 final size:43
Alignment explanation
Indices: 127243--127518 Score: 310
Period size: 43 Copynumber: 6.4 Consensus size: 43
127233 TTTTGAAAAT
*
127243 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTT-CCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTT-TTCCCAC
*
127286 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTGTTT-CCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCT-TTTCCCAC
* *
127329 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* *
127372 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
* * * * **
127415 AAACGCTGCTAAAG-ACAATGACCTTTAGTGACACTTTTTATCAC
1 AAACGCCGCTAAAGAAC-ATGACCTTTAGCGGCGC-TTTTCCCAC
* * * * * * *
127459 AAACGCCACTATAGAACA-AACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
127501 AAACGCCGCTAAA-AACAT
1 AAACGCCGCTAAAGAACAT
127519 ATCATGCAAA
Statistics
Matches: 200, Mismatches: 27, Indels: 13
0.83 0.11 0.05
Matches are distributed among these distances:
41 4 0.02
42 20 0.10
43 154 0.77
44 20 0.10
45 2 0.01
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:127396 original size:86 final size:84
Alignment explanation
Indices: 127243--127513 Score: 346
Period size: 86 Copynumber: 3.2 Consensus size: 84
127233 TTTTGAAAAT
*
127243 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTCCACAAACGCCACTAAAGAACATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTT-TTCCACAAACGCCACTAAAGAACATAAC
127308 CTTTAGCGGCGCTGTTTCCAC
65 CTTTAGCGGCGCT-TTTCCAC
* * *
127329 AAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATAAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT-CCACAAACGCCACTAAAGAACATAAC
127394 CTTTAGCGGCGCTTTTCCCAC
65 CTTTAGCGGCGCTTTT-CCAC
* * * * * * *
127415 AAACGCTGCTAAAGACAATGACCTTTAGTGACACTTTTTATCACAAACGCCACTATAGAACA-AA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTT-CCACAAACGCCACTAAAGAACATAA
* * *
127479 CCTTTAGCGACGCTTCTCGCAA
64 CCTTTAGCGGCGCTTTTC-CAC
127501 AAACGCCGCTAAA
1 AAACGCCGCTAAA
127514 AACATATCAT
Statistics
Matches: 162, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
85 6 0.04
86 134 0.83
87 22 0.14
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (84 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCACAAACGCCACTAAAGAACATAACC
TTTAGCGGCGCTTTTCCAC
Found at i:127400 original size:129 final size:129
Alignment explanation
Indices: 127243--127513 Score: 359
Period size: 129 Copynumber: 2.1 Consensus size: 129
127233 TTTTGAAAAT
*
127243 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTT-CCACAAACGCCACTAAAGA-ACATG
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTT-TTCCCACAAACGCCACTAAAGACA-ATG
* * * * * * *
127306 ACCTTTAGCGGCGCTGTTT-CCACAAACGCCGCTATAGACCATGACCTTTAGCGGCGCTTTTCCC
64 ACCTTTAGCGACACTGTTTACCACAAACGCCACTATAGAACA-AACCTTTAGCGACGCTTCTCCC
*
127370 AC
128 AA
**
127372 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTCCCACAAACGCTGCTAAAGACAATGAC
1 AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACAATGAC
* * * *
127437 CTTTAGTGACACTTTTTATCACAAACGCCACTATAGAACAAACCTTTAGCGACGCTTCTCGCAA
66 CTTTAGCGACACTGTTTACCACAAACGCCACTATAGAACAAACCTTTAGCGACGCTTCTCCCAA
127501 AAACGCCGCTAAA
1 AAACGCCGCTAAA
127514 AACATATCAT
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
128 2 0.02
129 102 0.82
130 20 0.16
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (129 bp):
AAACGCCGCTAAAGACCATAACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACAATGAC
CTTTAGCGACACTGTTTACCACAAACGCCACTATAGAACAAACCTTTAGCGACGCTTCTCCCAA
Done.