Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold732

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8176
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.30

Warning! 543 characters in sequence are not A, C, G, or T


Found at i:5699 original size:10 final size:10

Alignment explanation


    Indices: 5684--5708  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       5674 CTAGTTAAGT

                      
       5684 GCTGAATTGA
          1 GCTGAATTGA

                      
       5694 GCTGAATTGA
          1 GCTGAATTGA

                 
       5704 GCTGA
          1 GCTGA

       5709 CACGAGCTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28


Consensus pattern (10 bp):   
GCTGAATTGA

Found at i:6617 original size:24 final size:23

Alignment explanation


    Indices: 6563--6618  Score: 58
    Period size: 24  Copynumber: 2.4  Consensus size: 23

       6553 GATTAATTAA

                          **       
       6563 GAAATGGTATTTGGTTTTGGTAC
          1 GAAATGGTATTTGGAATTGGTAC

             ***                    
       6586 GTTTTGGTATTTGGGAATTGGTAC
          1 GAAATGGTATTT-GGAATTGGTAC

                     
       6610 GAAATGGTA
          1 GAAATGGTA

       6619 AGGNNNNNNN


Statistics
Matches: 24,  Mismatches: 8, Indels: 1
        0.73            0.24        0.03

Matches are distributed among these distances:
  23    9  0.38
  24   15  0.62

ACGTcount: A:0.23, C:0.04, G:0.32, T:0.41


Consensus pattern (23 bp):   
GAAATGGTATTTGGAATTGGTAC
Done.