Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3374

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 454

Length: 758
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30


Found at i:179 original size:34 final size:34

Alignment explanation


    Indices: 88--188  Score: 132
    Period size: 34  Copynumber: 3.0  Consensus size: 34

         78 ATGTAATATG

                                   *           
         88 ATATGCTTATAACAGATCAATACAATA-ACAATTA
          1 ATATGCTTATAACAGATCAATACGATAGA-AATTA

             *          *                     
        122 AAATGCTTATAATAGATCAATACGATAGAAATTA
          1 ATATGCTTATAACAGATCAATACGATAGAAATTA

                      *             *   *    
        156 ATATGCTTATGACAGATCAATACGGTAGCAATT
          1 ATATGCTTATAACAGATCAATACGATAGAAATT

        189 TGTAACCTCC


Statistics
Matches: 58,  Mismatches: 8, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
  34   57  0.98
  35    1  0.02

ACGTcount: A:0.46, C:0.13, G:0.12, T:0.30


Consensus pattern (34 bp):   
ATATGCTTATAACAGATCAATACGATAGAAATTA
Done.