Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold469
Parameters: 2 7 7 80 10 50 1000
Length:  185253

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--95
17
2.0
17
94
0
59
38
11
14
35
1.83
1126--1273
43
3.5
43
72
10
117
31
16
24
27
1.96
1871--1896
7
3.7
7
100
0
52
88
0
11
0
0.52
13165--13215
25
2.0
25
85
7
68
39
5
15
39
1.72
16536--16753
102
2.1
103
98
0
420
40
10
11
37
1.76
16745--16786
16
2.9
15
82
10
52
52
0
2
45
1.13
20735--20894
59
2.7
59
78
2
162
26
14
14
44
1.83
26185--26223
2
19.5
2
100
0
78
51
0
0
48
1.00
28357--28409
28
1.9
27
88
3
79
30
3
0
66
1.10
28460--28503
21
2.1
21
86
0
61
18
20
22
38
1.93
31678--31868
50
3.9
50
84
1
242
27
21
28
22
1.99
39935--39987
20
2.6
20
74
14
54
32
1
3
62
1.24
39935--39991
21
2.8
21
73
10
55
31
1
3
63
1.22
52030--52069
16
2.5
16
91
0
62
47
2
7
42
1.45
53553--53599
23
2.0
24
91
4
78
55
2
0
42
1.12
56072--56114
10
4.4
9
80
13
50
67
6
0
25
1.15
56071--56116
20
2.3
20
88
0
65
67
6
0
26
1.15
56111--56151
20
2.0
21
85
4
57
63
4
4
26
1.35
56265--56296
2
16.0
2
100
0
64
50
0
0
50
1.00
61557--61872
160
2.0
160
92
0
533
32
13
19
34
1.90
63322--63351
2
15.0
2
92
0
51
3
0
46
50
1.18
63325--63354
14
2.1
14
100
0
60
6
0
43
50
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69456--69491
12
3.1
12
88
4
56
66
11
0
22
1.22
69716--69756
19
2.2
19
86
0
55
36
19
2
41
1.65
88419--88523
44
2.5
40
76
15
113
31
29
4
34
1.78
88417--88526
45
2.6
44
81
8
131
31
29
5
33
1.80
88505--88537
16
2.1
16
94
0
57
30
36
0
33
1.58
91288--91313
3
8.7
3
100
0
52
65
0
34
0
0.93
94772--95222
103
4.4
102
87
4
624
38
15
18
27
1.91
94772--95222
98
4.4
100
88
4
532
38
15
18
27
1.91
95766--95877
44
2.5
44
88
5
156
52
4
19
23
1.64
96876--98465
104
15.4
104
93
3
2510
26
16
14
42
1.87
98458--98489
16
2.0
16
100
0
64
0
18
0
81
0.70
99568--99634
32
2.1
33
83
8
84
20
10
1
67
1.29
106994--107036
14
2.6
17
86
13
56
46
0
2
51
1.13
110964--111034
32
2.2
32
92
0
115
45
8
14
32
1.74
116184--116237
27
2.0
27
96
0
99
24
18
38
18
1.93
123881--123932
6
8.7
6
91
0
59
26
9
15
48
1.76
123883--123929
18
2.6
18
86
6
69
23
10
17
48
1.77
128665--128701
16
2.5
15
87
12
51
54
0
5
40
1.24
131446--131601
74
2.1
75
98
1
305
46
3
2
46
1.34
133475--133509
17
2.1
17
88
0
52
34
0
0
65
0.93
133493--133536
10
4.3
11
86
11
58
47
0
0
52
1.00
133548--133694
73
2.0
74
98
1
287
38
21
14
24
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137040--137154
7
15.9
7
87
7
167
43
43
0
13
1.43
137040--137154
29
4.0
28
85
8
167
43
43
0
13
1.43
138411--138435
6
4.2
6
100
0
50
84
0
0
16
0.63
138990--139043
24
2.2
25
83
6
65
25
5
0
68
1.11
143795--143902
43
2.4
45
84
6
139
23
2
15
58
1.51
144703--144760
29
2.0
30
83
10
75
37
1
22
37
1.65
144960--144989
14
2.2
13
94
5
51
0
53
0
46
1.00
147581--147632
24
2.2
24
89
0
77
36
3
9
50
1.54
147598--147644
24
2.0
24
87
8
69
40
6
8
44
1.60
148715--148745
9
3.4
9
90
0
53
38
22
12
25
1.90
170740--170801
26
2.3
26
88
2
88
67
8
9
14
1.40
175621--175685
28
2.3
28
94
0
112
47
6
12
33
1.66
177218--177243
12
2.2
12
100
0
52
26
0
0
73
0.84
181975--182140
83
2.0
83
91
0
269
36
21
4
37
1.75
182638--182667
14
2.1
14
93
0
51
10
26
26
36
1.88
182957--182982
5
5.2
5
100
0
52
42
19
19
19
1.90
183594--183651
29
2.0
29
82
3
71
43
1
34
20
1.62

Tables:   1

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