Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold844

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5360
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:146 original size:31 final size:30

Alignment explanation


    Indices: 81--153  Score: 94
    Period size: 29  Copynumber: 2.4  Consensus size: 30

         71 GAATTAGATC

                    *                     
         81 AAATCAAAATTCTATATATAAAATTGCACA
          1 AAATCAAAGTTCTATATATAAAATTGCACA

                                *         
        111 AAATCAAAGTT-TATATATACAATTGCACA
          1 AAATCAAAGTTCTATATATAAAATTGCACA

                    *     
        140 TTAAATCATAGTTC
          1 --AAATCAAAGTTC

        154 ATGTATAGTT


Statistics
Matches: 37,  Mismatches: 3, Indels: 4
        0.84            0.07        0.09

Matches are distributed among these distances:
  29   17  0.46
  30   10  0.27
  31   10  0.27

ACGTcount: A:0.48, C:0.14, G:0.05, T:0.33


Consensus pattern (30 bp):   
AAATCAAAGTTCTATATATAAAATTGCACA
Done.