Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold561
Parameters: 2 7 7 80 10 50 1000
Length:  92987

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88--139
24
2.1
25
82
13
63
51
5
3
38
1.44
411--439
2
15.0
2
92
7
51
51
0
0
48
1.00
450--1040
295
2.0
295
100
0
1182
40
8
20
29
1.82
5289--5317
2
14.5
2
100
0
58
48
0
0
51
1.00
16169--16193
10
2.5
10
100
0
50
44
0
0
56
0.99
16655--16710
26
2.2
26
100
0
112
35
19
21
23
1.96
18387--18492
52
2.0
52
96
0
194
48
8
17
25
1.76
21098--21161
24
2.7
24
90
0
83
34
3
42
20
1.68
23294--23339
19
2.4
18
82
10
56
13
6
2
78
1.04
24568--24839
131
2.1
131
95
0
481
38
14
13
33
1.85
32534--32587
26
2.1
26
82
6
65
53
1
11
33
1.47
32848--32945
50
2.0
50
89
4
153
55
2
13
29
1.49
42224--42250
14
1.9
14
100
0
54
70
0
0
29
0.88
42380--42457
38
2.1
38
95
0
138
43
7
21
26
1.80
44654--44767
31
3.8
30
78
13
108
28
22
4
43
1.72
46058--46107
26
1.9
26
84
8
66
60
6
8
26
1.48
57427--57504
11
7.4
11
77
12
74
35
1
1
61
1.12
57407--57519
40
2.8
40
87
5
156
35
0
0
62
1.07
57419--57526
21
5.2
20
68
19
62
36
0
0
62
1.08
70964--71008
19
2.4
19
86
13
67
66
13
2
17
1.34
83048--83121
9
8.2
9
70
5
51
18
28
47
5
1.71
83048--83127
27
3.0
27
88
0
106
18
28
46
6
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83108--83338
39
5.9
39
89
6
317
12
35
44
8
1.72
83108--83350
79
3.1
80
89
6
356
12
34
44
8
1.72
84890--84925
2
18.0
2
100
0
72
50
0
0
50
1.00
86406--86448
21
2.1
20
83
12
52
37
4
6
51
1.50
86440--86473
16
2.1
16
100
0
68
17
0
11
70
1.16
86598--86642
18
2.5
18
100
0
90
57
6
4
31
1.44
86706--86747
16
2.6
16
92
0
66
42
7
2
47
1.43
91712--91769
28
2.1
28
100
0
116
29
20
15
34
1.94

Tables:   1

The End!