Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2944

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 492

Length: 820
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30


Found at i:773 original size:6 final size:6

Alignment explanation


    Indices: 758--790  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        748 AGGTTTTCAA

                        *                          
        758 AAATGG AAATGA AAAT-G AAATGG AAATGG AAAT
          1 AAATGG AAATGG AAATGG AAATGG AAATGG AAAT

        791 TTGCAATCAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   5    4  0.17
   6   20  0.83

ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18


Consensus pattern (6 bp):   
AAATGG

Found at i:774 original size:12 final size:12

Alignment explanation


    Indices: 757--790  Score: 52
    Period size: 11  Copynumber: 2.9  Consensus size: 12

        747 TAGGTTTTCA

                        
        757 AAAATGGAAATG
          1 AAAATGGAAATG

                        
        769 AAAAT-GAAATG
          1 AAAATGGAAATG

            *          
        780 GAAATGGAAAT
          1 AAAATGGAAAT

        791 TTGCAATCAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  11   10  0.50
  12   10  0.50

ACGTcount: A:0.59, C:0.00, G:0.24, T:0.18


Consensus pattern (12 bp):   
AAAATGGAAATG

Found at i:780 original size:17 final size:17

Alignment explanation


    Indices: 758--790  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        748 AGGTTTTCAA

                             
        758 AAATGGAAATGAAAATG
          1 AAATGGAAATGAAAATG

                       *    
        775 AAATGGAAATGGAAAT
          1 AAATGGAAATGAAAAT

        791 TTGCAATCAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18


Consensus pattern (17 bp):   
AAATGGAAATGAAAATG
Done.