Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3230

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.40


Found at i:733 original size:43 final size:43

Alignment explanation


    Indices: 685--769  Score: 116
    Period size: 43  Copynumber: 2.0  Consensus size: 43

        675 AATGATGTAC

                   *   *      *     *                  
        685 AAGATTTTCTTGATTAAGTAAATGTATTATATCTTTTATTACT
          1 AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTACT

                                        *   *         
        728 AAGATTTACTTAATTAAGAAAATGCATTGTATGTTTTATTAC
          1 AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTAC

        770 CTTGCATATG


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  43   36  1.00

ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47


Consensus pattern (43 bp):   
AAGATTTACTTAATTAAGAAAATGCATTATATCTTTTATTACT
Done.