Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2114

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43


Found at i:1068 original size:17 final size:17

Alignment explanation


    Indices: 1024--1076  Score: 58
    Period size: 17  Copynumber: 3.2  Consensus size: 17

       1014 TTTTTATATG

                           * 
       1024 TTATTTTAAAA-TTTGT
          1 TTATTTTAAAATTTTTT

                              
       1040 TTATCTTT--AATTTTTT
          1 TTAT-TTTAAAATTTTTT

                            *
       1056 TTATTTTAAAATTTTTC
          1 TTATTTTAAAATTTTTT

                
       1073 TTAT
          1 TTAT

       1077 ATATATTACA


Statistics
Matches: 31,  Mismatches: 2, Indels: 7
        0.77            0.05        0.17

Matches are distributed among these distances:
  15    5  0.16
  16   12  0.39
  17   14  0.45

ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68


Consensus pattern (17 bp):   
TTATTTTAAAATTTTTT

Found at i:1070 original size:16 final size:16

Alignment explanation


    Indices: 1024--1076  Score: 63
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1014 TTTTTATATG

                          * 
       1024 TTATTTTAAAATTTGT
          1 TTATTTTAAAATTTTT

                       *     
       1040 TTATCTTT-AATTTTTT
          1 TTAT-TTTAAAATTTTT

                            
       1056 TTATTTTAAAATTTTT
          1 TTATTTTAAAATTTTT

                 
       1072 CTTAT
          1 -TTAT

       1077 ATATATTACA


Statistics
Matches: 31,  Mismatches: 3, Indels: 5
        0.79            0.08        0.13

Matches are distributed among these distances:
  15    3  0.10
  16   21  0.68
  17    7  0.23

ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68


Consensus pattern (16 bp):   
TTATTTTAAAATTTTT
Done.