Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 107 of 210
Found at i:36201124 original size:153 final size:151
Alignment explanation
Indices: 36200966--36201715 Score: 850
Period size: 153 Copynumber: 4.9 Consensus size: 151
36200956 AAACAGACTA
36200966 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATATGATA
1 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAT-ATA
*
36201031 TTTTTT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAAGGGCCAAAGTAAGGGTTTTTTA
65 TTTTTTAAAAGTAATAAAATTCGG-GAAAAAAATACGAACAAAGGGCCAAA-TAAGGGTTTTTTA
36201095 CTAAATTTTAAAAAAAATAGAAAT
128 CTAAATTTTAAAAAAAATAGAAAT
*
36201119 AATTAA-AACATTTCAAACATAATGTACTAAAATAATGTAAAAAAATAAAA-TACGAAAATAATA
1 AATTAATAA-ATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAAT-ATA
* *
36201182 TATTTTTATTGAAAGTAATAAAATTCGGGAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTT
63 TA-TTTT-TTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCC-AAATAAGGGTTTT
* ** * *
36201247 TTAATTTA-TTTAAAAAAAACACTAAAT
125 TTACTAAATTTTAAAAAAAATA-GAAAT
* *
36201274 --TTATTTAATTT--AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATATTATA
1 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATA-TATA
* *
36201335 TTTTTTAAAAGTAATAAAATTCGGG-AAAAAATACG-ATAAAGGGCTGAAATAAGGGTTTTTTAC
65 TTTTTTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGC-CAAATAAGGGTTTTTTAC
* **
36201398 TAAATTTTTTTAAAAAAATAGACTT
129 TAAA--TTTTAAAAAAAATAGAAAT
* * * * *
36201423 AATTAATACATTCCAAAGATAATGTACTAAAATAAAGTAAAATAATAAAA-TACAAAAATAATAT
1 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAAT-ATAT
* * *
36201487 ATTTTTATTGAAAGTAATAAAATTCGAGAAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTT
64 A-TTTT-TTAAAAGTAATAAAATTCG-GGAAAAAAATACGAACAAAGGGCC-AAATAAGGGTTTT
*
36201552 TTA--AAATTTATTTAAAAAAACACTA-AATT
125 TTACTAAA--T-TTTAAAAAAA-A-TAGAAAT
* *
36201581 TATT--TAAATTTCAAAAATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATA
1 AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATA-TATA
** * * *
36201644 TTTTTTAAAAGTAATAAAATTTAGGAAAAAAATACAAACAAATGGCTGAAATAAGGG-TTTTTAC
65 TTTTTTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGC-CAAATAAGGGTTTTTTAC
36201708 TAAATTTT
129 TAAATTTT
36201716 TCTAGAAGTT
Statistics
Matches: 511, Mismatches: 51, Indels: 72
0.81 0.08 0.11
Matches are distributed among these distances:
147 25 0.05
148 10 0.02
149 22 0.04
150 16 0.03
151 54 0.11
152 15 0.03
153 132 0.26
154 43 0.08
155 66 0.13
156 75 0.15
157 21 0.04
158 30 0.06
159 2 0.00
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (151 bp):
AATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATATATAT
TTTTTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCCAAATAAGGGTTTTTTACTA
AATTTTAAAAAAAATAGAAAT
Found at i:36201415 original size:304 final size:307
Alignment explanation
Indices: 36200948--36201716 Score: 1162
Period size: 304 Copynumber: 2.5 Consensus size: 307
36200938 AAAAATTGTA
* * * *
36200948 TATTTAAAAAACAGACTAAA-TTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAAT
1 TATTTAAAAAAAACACTAAATTTATTTAATTT-AAACATAATGTACTAAAATAATGTAAAATAAT
* *
36201012 AAAATTAGAAAATATGATATTTTTT-AAAGTAATAAAATGCGGAGAAAAAAATACGAACAAAGGG
65 AAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATTCGG-G-AAAAAATACG-ACAAAGGG
* *
36201076 C-CAAAGTAAGGGTTTTTTACTAAA--TTTTAAAAAAAATAGAAATAATTAAAACATTTCAAACA
127 CTGAAA-TAAGGGTTTTTTACTAAATTTTTTAAAAAAAATAGAAATAATTAAAACATTCCAAACA
* *
36201138 TAATGTACTAAAATAATGTAAAAAAATAAAATACGAAAATAATATATTTTTATTGAAAGTAATAA
191 TAATGTACTAAAATAAAGTAAAAAAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAA
*
36201203 AATTCG-GGAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTTTT-AATT
256 AATTCGAGAAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTTTTAAATT
36201253 TATTTAAAAAAAACACTAAATTTATTTAATTT-AACATAATGTACTAAAATAATGTAAAATAATA
1 TATTTAAAAAAAACACTAAATTTATTTAATTTAAACATAATGTACTAAAATAATGTAAAATAATA
*
36201317 AAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGATAAAGGGCTGA
66 AAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGACAAAGGGCTGA
* ** * *
36201382 AATAAGGGTTTTTTACTAAATTTTTTTAAAAAAATAGACTTAATTAATACATTCCAAAGATAATG
131 AATAAGGGTTTTTTACTAAATTTTTTAAAAAAAATAGAAATAATTAAAACATTCCAAACATAATG
*
36201447 TACTAAAATAAAGTAAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTC
196 TACTAAAATAAAGTAAAAAAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTC
36201512 GAGAAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTTTTAAAATT
261 GAGAAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTTTT-AAATT
*
36201560 TATTT-AAAAAAACACTAAATTTATTTAAATTTCAAAAATAATGTACTAAAATAATGTAAAATAA
1 TATTTAAAAAAAACACTAAATTTATTT-AATTT-AAACATAATGTACTAAAATAATGTAAAATAA
* * * * *
36201624 TAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAAATTTAGGAAAAAAATACAAACAAATGG
64 TAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAA-TTCGGGAAAAAATAC-GACAAAGGG
36201689 CTGAAATAAGGG-TTTTTACTAAATTTTT
127 CTGAAATAAGGGTTTTTTACTAAATTTTT
36201717 CTAGAAGTTG
Statistics
Matches: 426, Mismatches: 25, Indels: 21
0.90 0.05 0.04
Matches are distributed among these distances:
302 26 0.06
303 13 0.03
304 156 0.37
305 73 0.17
306 30 0.07
307 14 0.03
309 67 0.16
310 29 0.07
311 18 0.04
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (307 bp):
TATTTAAAAAAAACACTAAATTTATTTAATTTAAACATAATGTACTAAAATAATGTAAAATAATA
AAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGACAAAGGGCTGA
AATAAGGGTTTTTTACTAAATTTTTTAAAAAAAATAGAAATAATTAAAACATTCCAAACATAATG
TACTAAAATAAAGTAAAAAAATAAAATACAAAAATAATATATTTTTATTGAAAGTAATAAAATTC
GAGAAAAAAAATACGAGCAAAGGGCCGAAATAAGGGTTTTTTAAATT
Found at i:36206835 original size:23 final size:23
Alignment explanation
Indices: 36206790--36206836 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36206780 TAAAAATAAT
*
36206790 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
36206813 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
36206836 A
1 A
36206837 CAATAATCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:36207130 original size:3 final size:3
Alignment explanation
Indices: 36207124--36207162 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
36207114 TCCGACACCA
36207124 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT
36207163 TCTTCTTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CCT
Found at i:36209580 original size:7 final size:7
Alignment explanation
Indices: 36209568--36209593 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36209558 TAGTCGATTG
36209568 GTATTTA
1 GTATTTA
36209575 GTATTTA
1 GTATTTA
36209582 GTATTTA
1 GTATTTA
36209589 GTATT
1 GTATT
36209594 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:36210505 original size:21 final size:21
Alignment explanation
Indices: 36210472--36210518 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
36210462 CAACTCCGAC
36210472 AACCAGATGCCCTACT-GGAAG
1 AACCAGATGCCCT-CTCGGAAG
*
36210493 AACCAGAAT-CCCTGTCGGAAG
1 AACCAG-ATGCCCTCTCGGAAG
36210514 AACCA
1 AACCA
36210519 CAACCGCCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 20 0.87
22 2 0.09
ACGTcount: A:0.36, C:0.30, G:0.21, T:0.13
Consensus pattern (21 bp):
AACCAGATGCCCTCTCGGAAG
Found at i:36217730 original size:22 final size:21
Alignment explanation
Indices: 36217687--36218373 Score: 815
Period size: 22 Copynumber: 32.0 Consensus size: 21
36217677 CTGAAAACTC
36217687 AAACCCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
* * *
36217708 AACCCCTAATCCATTAACCTAA
1 AAACCCTAA-CCCTTAACTTAA
* * *
36217730 AAACCTTAACCCTTACCTTTA
1 AAACCCTAACCCTTAACTTAA
* *
36217751 AAACCCTAAACCCTTGACCTAA
1 AAACCCT-AACCCTTAACTTAA
*
36217773 AAACCCTAACCCTTAACTTTA
1 AAACCCTAACCCTTAACTTAA
*
36217794 AAACCCTAGACCCTTAAATTAA
1 AAACCCTA-ACCCTTAACTTAA
*
36217816 AAACCCTAAACCCTTAATTTAA
1 AAACCCT-AACCCTTAACTTAA
* *
36217838 AAA-CCTAACCCTTAAATTAC
1 AAACCCTAACCCTTAACTTAA
*
36217858 AAACCCTAAACCCTTAACCTAA
1 AAACCCT-AACCCTTAACTTAA
* *
36217880 AAACCCTAACCCTTAACCTGA
1 AAACCCTAACCCTTAACTTAA
* * *
36217901 AAACCTTAAACCTTAACTTTA
1 AAACCCTAACCCTTAACTTAA
36217922 AAACCCTAGACCCTTAACTTAA
1 AAACCCTA-ACCCTTAACTTAA
* *
36217944 ACACCATAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
* *
36217966 AAGCCCTAACCCTTAAATTAA
1 AAACCCTAACCCTTAACTTAA
* * *
36217987 AAACCCTAAACCATTAGCCTAA
1 AAACCCT-AACCCTTAACTTAA
*
36218009 AAACCCTAACCCTTAACCTAA
1 AAACCCTAACCCTTAACTTAA
*
36218030 AAACCCTAACCCTTAACTTTA
1 AAACCCTAACCCTTAACTTAA
36218051 AAACCCTAGACCCTTAACTTAA
1 AAACCCTA-ACCCTTAACTTAA
36218073 AAACCCTAAACCCTTAACTT-A
1 AAACCCT-AACCCTTAACTTAA
*
36218094 AAACCCTAACCCTTAAATTAA
1 AAACCCTAACCCTTAACTTAA
* *
36218115 AATA-ACTAAACCCTTAACCTAA
1 AA-ACCCT-AACCCTTAACTTAA
*
36218137 AAACCCTAACCCTTAACCTAA
1 AAACCCTAACCCTTAACTTAA
* *
36218158 AAACCCTAAACCTTTAACTTTA
1 AAACCCT-AACCCTTAACTTAA
36218180 AAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
*
36218202 AAACCCTAACCCTTAAATTAA
1 AAACCCTAACCCTTAACTTAA
*
36218223 AAACCCTAAACCCTTAACCT-A
1 AAACCCT-AACCCTTAACTTAA
*
36218244 AAACCCTAACCCTTAACCTAA
1 AAACCCTAACCCTTAACTTAA
* *
36218265 AAACTCTAACCCTTAACCTAA
1 AAACCCTAACCCTTAACTTAA
*
36218286 AAACCCTTAACCCTTAACTTTA
1 AAACCC-TAACCCTTAACTTAA
*
36218308 AAACCCTAGACCCTTAACTTTA
1 AAACCCTA-ACCCTTAACTTAA
36218330 AAACCCTAAACCCTTAACTTAA
1 AAACCCT-AACCCTTAACTTAA
36218352 AAACCCTAACCCTTAACTTAA
1 AAACCCTAACCCTTAACTTAA
36218373 A
1 A
36218374 TATAATTTGA
Statistics
Matches: 578, Mismatches: 67, Indels: 42
0.84 0.10 0.06
Matches are distributed among these distances:
20 38 0.07
21 248 0.43
22 288 0.50
23 4 0.01
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.24
Consensus pattern (21 bp):
AAACCCTAACCCTTAACTTAA
Found at i:36217740 original size:43 final size:41
Alignment explanation
Indices: 36217694--36218373 Score: 713
Period size: 43 Copynumber: 15.9 Consensus size: 41
36217684 CTCAAACCCT
* * *
36217694 AACCCTTAACTTAAAACCCCTAATCCATTAACCTAAAAACCTT
1 AACCCTTAACTTAAAA-CCCTAA-CCCTTAACTTAAAAACCTA
* * *
36217737 AACCCTTACCTTTAAAACCCTAAACCCTTGACCTAAAAACCCT-
1 AACCCTTAAC-TTAAAACCCT-AACCCTTAACTTAAAAA-CCTA
*
36217780 AACCCTTAACTTTAAAACCCTAGACCCTTAAATTAAAAACCCTA
1 AACCCTTAAC-TTAAAACCCTA-ACCCTTAACTTAAAAA-CCTA
* * * *
36217824 AACCCTTAATTTAAAAACCTAACCCTTAAATTACAAACCCTA
1 AACCCTTAACTTAAAACCCTAACCCTTAACTTA-AAAACCTA
* * *
36217866 AACCCTTAACCTAAAAACCCTAACCCTTAACCTGAAAACCTTA
1 AACCCTTAA-CTTAAAACCCTAACCCTTAACTTAAAAACC-TA
*
36217909 AA-CCTTAACTTTAAAACCCTAGACCCTTAACTTAAACACCATA
1 AACCCTTAAC-TTAAAACCCTA-ACCCTTAACTTAAAAACC-TA
*
36217952 AACCCTTAACTTAAAAGCCCTAACCCTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAA-CCCTAACCCTTAACTTAAAAA-CCTA
* * * *
36217995 AACCATTAGCCTAAAAACCCTAACCCTTAACCTAAAAACCCT-
1 AACCCTTA-ACTTAAAACCCTAACCCTTAACTTAAAAA-CCTA
36218037 AACCCTTAACTTTAAAACCCTAGACCCTTAACTTAAAAACCCTA
1 AACCCTTAAC-TTAAAACCCTA-ACCCTTAACTTAAAAA-CCTA
* *
36218081 AACCCTTAACTTAAAACCCTAACCCTTAAATTAAAATAACTA
1 AACCCTTAACTTAAAACCCTAACCCTTAACTTAAAA-ACCTA
* *
36218123 AACCCTTAACCTAAAAACCCTAACCCTTAACCTAAAAACCCTA
1 AACCCTTAA-CTTAAAACCCTAACCCTTAACTTAAAAA-CCTA
*
36218166 AACCTTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCT-
1 AACCCTTAAC-TTAAAACCCT-AACCCTTAACTTAAAAA-CCTA
* * *
36218209 AACCCTTAAATTAAAAACCCTAAACCCTTAACCTAAAACCCT-
1 AACCCTTAACTT-AAAACCCT-AACCCTTAACTTAAAAACCTA
* * * *
36218251 AACCCTTAACCTAAAAACTCTAACCCTTAACCTAAAAACCCTT
1 AACCCTTAA-CTTAAAACCCTAACCCTTAACTTAAAAA-CCTA
*
36218294 AACCCTTAACTTTAAAACCCTAGACCCTTAACTTTAAAACCCTA
1 AACCCTTAAC-TTAAAACCCTA-ACCCTTAAC-TTAAAAACCTA
36218338 AACCCTTAACTTAAAAACCCTAACCCTTAACTTAAA
1 AACCCTTAACTT-AAAACCCTAACCCTTAACTTAAA
36218374 TATAATTTGA
Statistics
Matches: 552, Mismatches: 55, Indels: 61
0.83 0.08 0.09
Matches are distributed among these distances:
41 18 0.03
42 122 0.22
43 306 0.55
44 101 0.18
45 5 0.01
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.24
Consensus pattern (41 bp):
AACCCTTAACTTAAAACCCTAACCCTTAACTTAAAAACCTA
Found at i:36217935 original size:150 final size:147
Alignment explanation
Indices: 36217687--36218373 Score: 842
Period size: 150 Copynumber: 4.6 Consensus size: 147
36217677 CTGAAAACTC
* * * * *
36217687 AAACCCTAACCCTTAACTTAAAACCCCTAATCCATTAACCTAAAAACCTTAACCCTTACCTTTAA
1 AAACCCTAACCCTTAACTTAAAA-CCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAA
* *
36217752 AACCCTAAACCCTTGACCTAAAAACCCT-AACCCTTAACTTTAAAACCCTAGACCCTTAAATTAA
65 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAC-TTAAAACCCTA-ACCCTTAAATTAA
**
36217816 AAACCCTAAACCCTTAATTTAA
127 AAACCCT-AACCCTTAACCTAA
* * *
36217838 AAA-CCTAACCCTTAAATTACAAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTGAA
1 AAACCCTAACCCTTAACTTA-AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAA
* * * * * *
36217902 AACCTTAAACCTTAACTTTAAAACCCTAGACCCTTAACTTAAACACCATAAACCCTTAACTTAAA
65 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA-ACCCT-AACCCTTAAATTAAA
* **
36217967 AGCCCTAACCCTTAAATTAA
128 AACCCTAACCCTTAACCTAA
* * * *
36217987 AAACCCTAAACCATTAGCCTAAAAACCCT-AACCCTTAACCTAAAAACCCTAACCCTTAACTTTA
1 AAACCCT-AACCCTTA-ACTTAAAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAA
36218051 AAACCCTAGACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAACCCTTAAATTAAA
64 AAACCCTA-ACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAACCCTTAAATTAAA
*
36218116 ATA-ACTAAACCCTTAACCTAA
128 A-ACCCT-AACCCTTAACCTAA
* * * *
36218137 AAACCCTAACCCTTAACCTAAAAACCCTAAACCTTTAACTTTAAAACCCTAAACCCTTAACTTAA
1 AAACCCTAACCCTTAA-CTTAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACTTAA
* * **
36218202 AAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACCTAAAACCCTAACCCTTAACCTAAAA
64 AAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAACCCTTAAATTAAAA
*
36218267 ACTCTAACCCTTAACCTAA
129 ACCCTAACCCTTAACCTAA
* * *
36218286 AAACCCTTAACCCTTAACTTTAAAACCCTAGACCCTTAACTTTAAAACCCTAAACCCTTAACTTA
1 AAACCC-TAACCCTTAAC-TTAAAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACTTA
36218351 AAAACCCTAACCCTTAACTTAAA
63 AAAACCCTAACCCTTAACTTAAA
36218374 TATAATTTGA
Statistics
Matches: 472, Mismatches: 48, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
149 95 0.20
150 300 0.64
151 75 0.16
152 2 0.00
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.24
Consensus pattern (147 bp):
AAACCCTAACCCTTAACTTAAAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACTTAAAA
ACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAACCCTTAAATTAAAAAC
CCTAACCCTTAACCTAA
Found at i:36221061 original size:24 final size:24
Alignment explanation
Indices: 36221029--36221076 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36221019 TAACAGAATG
36221029 TCGAACACCAGTCGCAAGTACATC
1 TCGAACACCAGTCGCAAGTACATC
36221053 TCGAACACCAGTCGCAAGTACATC
1 TCGAACACCAGTCGCAAGTACATC
36221077 ATTTGGCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (24 bp):
TCGAACACCAGTCGCAAGTACATC
Found at i:36221750 original size:126 final size:125
Alignment explanation
Indices: 36221518--36222033 Score: 680
Period size: 126 Copynumber: 4.1 Consensus size: 125
36221508 CATGTTACTA
* * * *
36221518 TAGCAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCA-AATAGCAAGCTGCTTGCA
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAA-AGCAACCTGCTTGAA
* * *
36221582 GCATTGTTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTTCAGGACCAACTG
65 GCATT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
* *
36221644 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCAAGCTGCTTGCA
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAA-AGCAACCTGCTTGAA
* * * *
36221708 GCATTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACCTACTG
65 GCATT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
* * * * *
36221770 TAGCAAAACCGCGTCCACGTGGGCGCGACTTT-ACAAATTCTTCTTATAAAGCATCCTGCTTGAA
1 TAGCAAAAGCGCGTCCACGAGGGCGCGA-TTTCACAAATTCTTCTCACAAAGCAACCTGCTTGAA
* *
36221834 GC-GTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTG
65 GCATTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACTG
* * * * * *
36221895 TAGTAAAAGCGAGTCCACGAGGGTGCAATTTCACAAATTCTTCTCACAAAGCATCCTGTTTGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAAAGCAACCTGCTTGAAG
* * * *
36221960 CGTTTTTTAAACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGAACCTACTG
66 CATTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
36222020 TAGCAAAAGCGCGT
1 TAGCAAAAGCGCGT
36222034 ACACATGGGC
Statistics
Matches: 352, Mismatches: 33, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
124 41 0.12
125 92 0.26
126 214 0.61
127 5 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAAAGCAACCTGCTTGAAG
CATTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
Found at i:36221988 original size:250 final size:252
Alignment explanation
Indices: 36221513--36222080 Score: 752
Period size: 250 Copynumber: 2.3 Consensus size: 252
36221503 CCAAACATGT
* * **
36221513 TACTATAGCAAAAGCACGTCCACGTGGGCGCGA-TTTCACAAATTCTTCTCA-AATAGCAAGCTG
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGACTTT-ACAAATTCTTCTCATAA-AGCATCCTG
* * * * * *
36221576 CTTGCAGCATTGTTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTTCAGGACCAA
64 CTTGAAGCAGTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAA
* * *
36221641 CTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCAAGCTGCTTG
129 CTGTAGCAAAAGCGAGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCAACCTGCTTG
* * * *
36221706 CAGCATTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACC
194 AAGCATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGAACC
* *
36221765 TACTGTAGCAAAACCGCGTCCACGTGGGCGCGACTTTACAAATTCTTCTTATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGACTTTACAAATTCTTCTCATAAAGCATCCTGCT
36221830 TGAAGC-GT-TTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGACCAAC
66 TGAAGCAGTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGACCAAC
* * * *
36221893 TGTAGTAAAAGCGAGTCCACGAGGGTGCAATTTCACAAATTCTTCTCACAA-AGCATCCTGTTTG
130 TGTAGCAAAAGCGAGTCCACGAGGGCGCAATTTCACAAATTCTTCTCA-AATAGCAACCTGCTTG
* * *
36221957 AAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGAACC
194 AAGCATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGAACC
* * * * * * * *
36222015 TACTGTAGCAAAAGCGCGTACACATGGGCGTGACTTTAAAAATCCTTCTGATCAATCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGACTTTACAAATTCTTCTCATAAAGCATCCTGCT
36222080 T
66 T
36222081 TGATTTTATC
Statistics
Matches: 277, Mismatches: 35, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
250 141 0.51
251 72 0.26
252 59 0.21
253 5 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (252 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGACTTTACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCAGTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCAACT
GTAGCAAAAGCGAGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCAACCTGCTTGAA
GCATTGTTTTAAACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGAACC
Found at i:36226680 original size:8 final size:8
Alignment explanation
Indices: 36226667--36226724 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
36226657 GTTTAAGGTT
36226667 TTTTGTAA
1 TTTTGTAA
36226675 TTTTGTAA
1 TTTTGTAA
36226683 TTTT-TAA
1 TTTTGTAA
* *
36226690 TTTAGGT-T
1 TTT-TGTAA
36226698 TTTTGTAA
1 TTTTGTAA
36226706 TTTTGTAA
1 TTTTGTAA
36226714 TTTT-TAA
1 TTTTGTAA
36226721 TTTT
1 TTTT
36226725 ACTTTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
7 15 0.35
8 27 0.63
9 1 0.02
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.67
Consensus pattern (8 bp):
TTTTGTAA
Found at i:36226697 original size:31 final size:32
Alignment explanation
Indices: 36226662--36226749 Score: 128
Period size: 31 Copynumber: 2.8 Consensus size: 32
36226652 TTATAGTTTA
36226662 AGGTTTTTTGTAATTTTGTAATTTTTAA-TTT
1 AGGTTTTTTGTAATTTTGTAATTTTTAATTTT
36226693 AGGTTTTTTGTAATTTTGTAATTTTTAATTTT
1 AGGTTTTTTGTAATTTTGTAATTTTTAATTTT
* * *
36226725 A-CTTTTTTTTAATTTT-AAATTTTTA
1 AGGTTTTTTGTAATTTTGTAATTTTTA
36226750 GTCTTAACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
30 8 0.15
31 41 0.77
32 4 0.08
ACGTcount: A:0.24, C:0.01, G:0.09, T:0.66
Consensus pattern (32 bp):
AGGTTTTTTGTAATTTTGTAATTTTTAATTTT
Found at i:36226747 original size:16 final size:16
Alignment explanation
Indices: 36226714--36226748 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36226704 AATTTTGTAA
**
36226714 TTTTTAATTTTACTTT
1 TTTTTAATTTTAAATT
36226730 TTTTTAATTTTAAATT
1 TTTTTAATTTTAAATT
36226746 TTT
1 TTT
36226749 AGTCTTAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTAATTTTAAATT
Found at i:36229340 original size:17 final size:18
Alignment explanation
Indices: 36229315--36229349 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36229305 ATTTGTCTAT
36229315 ATTTGTAAT-ATTTTTAA
1 ATTTGTAATGATTTTTAA
*
36229332 ATTTTTAATGATTTTTAA
1 ATTTGTAATGATTTTTAA
36229350 TTGAACCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
ATTTGTAATGATTTTTAA
Found at i:36229347 original size:10 final size:9
Alignment explanation
Indices: 36229313--36229350 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
36229303 GGATTTGTCT
*
36229313 ATATTTGTA
1 ATATTTTTA
36229322 ATATTTTTA
1 ATATTTTTA
36229331 A-ATTTTTA
1 ATATTTTTA
36229339 ATGATTTTTA
1 AT-ATTTTTA
36229349 AT
1 AT
36229351 TGAACCAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 8 0.31
9 9 0.35
10 9 0.35
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (9 bp):
ATATTTTTA
Found at i:36231979 original size:2 final size:2
Alignment explanation
Indices: 36231972--36231996 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36231962 GGATTATTGT
36231972 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
36231997 TTTTAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:36232660 original size:30 final size:31
Alignment explanation
Indices: 36232614--36232685 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 31
36232604 GCCTAATGTA
*
36232614 GGAACAATTGCTTAGCTTAAGCCCCAATATG
1 GGAACAATTGCTTAGCTTAAGCCCCAACATG
* *
36232645 GGAACACTTGC-TAGCTTAAGCTCCAACATG
1 GGAACAATTGCTTAGCTTAAGCCCCAACATG
*
36232675 AGAACAATTGC
1 GGAACAATTGC
36232686 CAAGTTCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 26 0.72
31 10 0.28
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (31 bp):
GGAACAATTGCTTAGCTTAAGCCCCAACATG
Found at i:36245479 original size:27 final size:27
Alignment explanation
Indices: 36245439--36245516 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
36245429 TAGTATTGGC
36245439 GCCTATCTCG-GAGGCGCCAATGGTAGT
1 GCCTATCT-GAGAGGCGCCAATGGTAGT
* *
36245466 GCCTATCTGAGAGGCGCCAATAGTGGT
1 GCCTATCTGAGAGGCGCCAATGGTAGT
* *
36245493 GCC-ATGTTAAGAGGCGCCAATGGT
1 GCCTAT-CTGAGAGGCGCCAATGGT
36245517 CTGATTTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.22
Consensus pattern (27 bp):
GCCTATCTGAGAGGCGCCAATGGTAGT
Found at i:36248582 original size:16 final size:15
Alignment explanation
Indices: 36248551--36248594 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
36248541 ACAAAATCAA
36248551 ATAAAATTAAATTAT
1 ATAAAATTAAATTAT
*
36248566 ATAAAAGTTACATTAT
1 ATAAAA-TTAAATTAT
36248582 ATAAAAATTAAAT
1 AT-AAAATTAAAT
36248595 GAGTTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.24
16 15 0.60
17 4 0.16
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAAAATTAAATTAT
Found at i:36248810 original size:19 final size:19
Alignment explanation
Indices: 36248786--36248822 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36248776 TAAAATAATT
36248786 ACAATATTCATACAAAATC
1 ACAATATTCATACAAAATC
*
36248805 ACAATATTCATATAAAAT
1 ACAATATTCATACAAAAT
36248823 ACTAATCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (19 bp):
ACAATATTCATACAAAATC
Found at i:36248963 original size:4 final size:4
Alignment explanation
Indices: 36248950--36248979 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
36248940 AATACATCAC
36248950 CTTT -TTT CTTT CTTT CTTT CTTT CTTT CTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
36248980 CTTCTTCTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
CTTT
Found at i:36248983 original size:3 final size:3
Alignment explanation
Indices: 36248975--36249020 Score: 62
Period size: 3 Copynumber: 16.3 Consensus size: 3
36248965 CTTTCTTTCT
*
36248975 TTC TTC TTC TTC -TC CTC TTC -TC TTC TTC TTC TTC TTC -TC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
36249020 T
1 T
36249021 CCTTTCTCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
2 6 0.15
3 33 0.85
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:36248993 original size:8 final size:8
Alignment explanation
Indices: 36248982--36249032 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
36248972 TCTTTCTTCT
36248982 TCTTCTCC
1 TCTTCTCC
*
36248990 TCTTCTCT
1 TCTTCTCC
*
36248998 TCTTCTTCT
1 TCTTC-TCC
*
36249007 TCTTCTCT
1 TCTTCTCC
36249015 TCTTCTCC
1 TCTTCTCC
36249023 T-TTCT-C
1 TCTTCTCC
36249029 TCTT
1 TCTT
36249033 TTTTTTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
6 2 0.05
7 6 0.15
8 23 0.59
9 8 0.21
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (8 bp):
TCTTCTCC
Found at i:36248995 original size:17 final size:16
Alignment explanation
Indices: 36248979--36249029 Score: 77
Period size: 17 Copynumber: 3.2 Consensus size: 16
36248969 CTTTCTTTCT
36248979 TCTTCTTCTCCTCTTC
1 TCTTCTTCTCCTCTTC
*
36248995 TCTTCTTCTTCTTCTTC
1 TCTTCTTC-TCCTCTTC
36249012 TCTTCTTCTCCT-TTC
1 TCTTCTTCTCCTCTTC
36249027 TCT
1 TCT
36249030 CTTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
15 6 0.19
16 11 0.34
17 15 0.47
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (16 bp):
TCTTCTTCTCCTCTTC
Found at i:36248995 original size:25 final size:25
Alignment explanation
Indices: 36248967--36249021 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
36248957 CTTTCTTTCT
36248967 TTCT-TTCTTTCTTCTTCTTCTCCTC
1 TTCTCTTC-TTCTTCTTCTTCTCCTC
*
36248992 TTCTCTTCTTCTTCTTCTTCTCTTC
1 TTCTCTTCTTCTTCTTCTTCTCCTC
36249017 TTCTC
1 TTCTC
36249022 CTTTCTCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (25 bp):
TTCTCTTCTTCTTCTTCTTCTCCTC
Found at i:36249016 original size:22 final size:21
Alignment explanation
Indices: 36248967--36249018 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 21
36248957 CTTTCTTTCT
36248967 TTCT-TTCTTTCTTCTTCTTC
1 TTCTCTTCTTTCTTCTTCTTC
*
36248987 TCCTCTTCTCTTCTTCTTCTTC
1 TTCTCTTCT-TTCTTCTTCTTC
36249009 TTCTCTTCTT
1 TTCTCTTCTT
36249019 CTCCTTTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 3 0.11
21 5 0.18
22 20 0.71
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (21 bp):
TTCTCTTCTTTCTTCTTCTTC
Found at i:36249030 original size:17 final size:17
Alignment explanation
Indices: 36248973--36249032 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
36248963 TTCTTTCTTT
36248973 CTTTCT-TCTTCTTCTC
1 CTTTCTCTCTTCTTCTC
* *
36248989 CTCT-TCTCTTCTTCTT
1 CTTTCTCTCTTCTTCTC
36249005 C-TTCTTCTCTTCTTCTC
1 CTTTC-TCTCTTCTTCTC
36249022 CTTTCTCTCTT
1 CTTTCTCTCTT
36249033 TTTTTTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
15 2 0.06
16 13 0.36
17 18 0.50
18 3 0.08
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (17 bp):
CTTTCTCTCTTCTTCTC
Found at i:36249032 original size:22 final size:20
Alignment explanation
Indices: 36248955--36249032 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 20
36248945 ATCACCTTTT
36248955 TTCT-TTCTT-TCTT-TCT-
1 TTCTCTTCTTCTCTTCTCTC
36248971 TTCT-TTCTTCTTCTTCTCCTC
1 TTCTCTTCTTC-TCTTCT-CTC
36248992 TTCTCTTC-T-TCTTCT-TC
1 TTCTCTTCTTCTCTTCTCTC
36249009 TTCTCTTCTTCTCCTTTCTCTC
1 TTCTCTTCTTCT-C-TTCTCTC
36249031 TT
1 TT
36249033 TTTTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
16 9 0.18
17 10 0.20
18 5 0.10
19 8 0.16
20 3 0.06
21 9 0.18
22 7 0.14
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
TTCTCTTCTTCTCTTCTCTC
Found at i:36249032 original size:25 final size:24
Alignment explanation
Indices: 36248973--36249032 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 24
36248963 TTCTTTCTTT
36248973 CTTTCTTCTTCTTCTCCTCTTCTC
1 CTTTCTTCTTCTTCTCCTCTTCTC
* *
36248997 TTCTTCTTCTTCTTCTCTTCTTCTC
1 CT-TTCTTCTTCTTCTCCTCTTCTC
36249022 CTTTCTCTCTT
1 CTTTCT-TCTT
36249033 TTTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (24 bp):
CTTTCTTCTTCTTCTCCTCTTCTC
Found at i:36257056 original size:5 final size:5
Alignment explanation
Indices: 36257046--36257071 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36257036 GAACAAATAT
36257046 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
36257072 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:36257404 original size:21 final size:21
Alignment explanation
Indices: 36257378--36257419 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
36257368 ACATATCGAT
*
36257378 GCCACTGTCCCAGATAGGGTC
1 GCCACTGTCCCAGACAGGGTC
36257399 GCCACTGTCCCAGACAGGGTC
1 GCCACTGTCCCAGACAGGGTC
36257420 TTACACGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.17
Consensus pattern (21 bp):
GCCACTGTCCCAGACAGGGTC
Found at i:36259718 original size:24 final size:24
Alignment explanation
Indices: 36259671--36259819 Score: 97
Period size: 24 Copynumber: 6.1 Consensus size: 24
36259661 TCTGTCAATT
*
36259671 CATATTCGGGAATGCTCATACGAGC
1 CATATACGGGAA-GCTCATACGAGC
* * *
36259696 ACTTA-ACGGGAAGCTCTTTCGAGC
1 -CATATACGGGAAGCTCATACGAGC
***
36259720 CATATACTGGGAAGCTCATGTAAGC
1 CATATAC-GGGAAGCTCATACGAGC
* **
36259745 CATATACAGGAAGCTCATGTGAGC
1 CATATACGGGAAGCTCATACGAGC
* * **
36259769 CATGTAACAGGAAGCTCCGGA-GAGC
1 CATAT-ACGGGAAGCT-CATACGAGC
36259794 CAT-TAACGGGAAGCTCATACGAGC
1 CATAT-ACGGGAAGCTCATACGAGC
36259818 CA
1 CA
36259820 ATTTTGAGAA
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
23 5 0.05
24 48 0.48
25 43 0.43
26 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (24 bp):
CATATACGGGAAGCTCATACGAGC
Found at i:36259745 original size:25 final size:24
Alignment explanation
Indices: 36259717--36259785 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 24
36259707 AGCTCTTTCG
*
36259717 AGCCATATACTGGGAAGCTCATGTA
1 AGCCATATAC-AGGAAGCTCATGTA
*
36259742 AGCCATATACAGGAAGCTCATGTG
1 AGCCATATACAGGAAGCTCATGTA
*
36259766 AGCCATGTAACAGGAAGCTC
1 AGCCATAT-ACAGGAAGCTC
36259786 CGGAGAGCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (24 bp):
AGCCATATACAGGAAGCTCATGTA
Found at i:36264031 original size:126 final size:126
Alignment explanation
Indices: 36263806--36264058 Score: 506
Period size: 126 Copynumber: 2.0 Consensus size: 126
36263796 AAACCTTTTT
36263806 AGAACCATATTTTATTTGTAAATATTAAATAATAATATTTACGAACTTACTTGCTGGATTTAGTG
1 AGAACCATATTTTATTTGTAAATATTAAATAATAATATTTACGAACTTACTTGCTGGATTTAGTG
36263871 GCATTGAACTACTATTTTTGACACCACTGAAAATCGGGATGTTACAACTCTCCCCACTTAA
66 GCATTGAACTACTATTTTTGACACCACTGAAAATCGGGATGTTACAACTCTCCCCACTTAA
36263932 AGAACCATATTTTATTTGTAAATATTAAATAATAATATTTACGAACTTACTTGCTGGATTTAGTG
1 AGAACCATATTTTATTTGTAAATATTAAATAATAATATTTACGAACTTACTTGCTGGATTTAGTG
36263997 GCATTGAACTACTATTTTTGACACCACTGAAAATCGGGATGTTACAACTCTCCCCACTTAA
66 GCATTGAACTACTATTTTTGACACCACTGAAAATCGGGATGTTACAACTCTCCCCACTTAA
36264058 A
1 A
36264059 AAAATTTCGT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (126 bp):
AGAACCATATTTTATTTGTAAATATTAAATAATAATATTTACGAACTTACTTGCTGGATTTAGTG
GCATTGAACTACTATTTTTGACACCACTGAAAATCGGGATGTTACAACTCTCCCCACTTAA
Found at i:36272873 original size:16 final size:16
Alignment explanation
Indices: 36272828--36272875 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
36272818 ACTTCTACAC
36272828 CTTTTTT-AATTTAGT
1 CTTTTTTCAATTTAGT
*
36272843 CATTTTCACTCAATTTAGT
1 C-TTTT--TTCAATTTAGT
36272862 CTTTTTTCAATTTA
1 CTTTTTTCAATTTA
36272876 ATCCTTCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 1 0.04
16 12 0.44
18 5 0.19
19 9 0.33
ACGTcount: A:0.23, C:0.15, G:0.04, T:0.58
Consensus pattern (16 bp):
CTTTTTTCAATTTAGT
Found at i:36280744 original size:26 final size:26
Alignment explanation
Indices: 36280715--36280781 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
36280705 CAGCTCGAAA
* * *
36280715 GAGCATCCCGATATATGGCTCTTCGT
1 GAGCTTCCCGATATAAGGCTATTCGT
* *
36280741 GAGCTTCCTGAT-TAAAGGCTATTTGT
1 GAGCTTCCCGATAT-AAGGCTATTCGT
36280767 GAGCTTCCCGATATA
1 GAGCTTCCCGATATA
36280782 GCTCGCTTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.03
26 31 0.94
27 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
GAGCTTCCCGATATAAGGCTATTCGT
Found at i:36296544 original size:31 final size:32
Alignment explanation
Indices: 36296490--36296551 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
36296480 CTCAATTATG
* *
36296490 ATTTGTTTTTTAAAACTAGTCATCGAACTATA
1 ATTTGTTTTTTAAAACGAGTCATCCAACTATA
36296522 ATTT-TTTTTTAAAATCGA-TCATCCAACTAT
1 ATTTGTTTTTTAAAA-CGAGTCATCCAACTAT
36296552 TTGAGATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 21 0.78
32 6 0.22
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (32 bp):
ATTTGTTTTTTAAAACGAGTCATCCAACTATA
Found at i:36296855 original size:17 final size:18
Alignment explanation
Indices: 36296830--36296867 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
36296820 AATAAATAAT
*
36296830 AATATATAAA-ATCTTAA
1 AATACATAAACATCTTAA
*
36296847 AATACATAAACATCTTCA
1 AATACATAAACATCTTAA
36296865 AAT
1 AAT
36296868 TTAAATCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (18 bp):
AATACATAAACATCTTAA
Found at i:36296886 original size:6 final size:6
Alignment explanation
Indices: 36296877--36296927 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
36296867 TTTAAATCTT
* *
36296877 ATATTA ATATTA ATATTA A-ATAA AAATT- ATATTA ATATTA A-ATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
36296922 A-ATTA A
1 ATATTA A
36296928 GCAAATCCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
5 18 0.45
6 22 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (6 bp):
ATATTA
Found at i:36297238 original size:6 final size:6
Alignment explanation
Indices: 36297227--36297260 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
36297217 GGGGAGTTTT
*
36297227 ATATTA ATATTA ATATTA ATATTA ATATCA ATAT
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATAT
36297261 AAAATTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:36297514 original size:29 final size:29
Alignment explanation
Indices: 36297471--36297570 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
36297461 TAATCTTGTT
*
36297471 TAGTT-GGTGACCAAATTTAAAAAATTCA
1 TAGTTGGGTGACCAAATTAAAAAAATTCA
** *
36297499 TAGTTGGGTGACCAAAAAAGAAACAAATCCA
1 TAGTTGGGTGACCAAATTA-AAA-AAATTCA
* *
36297530 TTGTTGGGTGACC-AATATAAAAAAAATCA
1 TAGTTGGGTGACCAAAT-TAAAAAAATTCA
*
36297559 TAGTTGAGTGAC
1 TAGTTGGGTGAC
36297571 TAAAAAAGAA
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
28 5 0.09
29 25 0.44
30 8 0.14
31 19 0.33
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (29 bp):
TAGTTGGGTGACCAAATTAAAAAAATTCA
Found at i:36297539 original size:31 final size:29
Alignment explanation
Indices: 36297489--36297582 Score: 109
Period size: 31 Copynumber: 3.1 Consensus size: 29
36297479 GACCAAATTT
36297489 AAAAAATTCATAGTTGGGTGACCAAAAAAG
1 AAAAAA-TCATAGTTGGGTGACCAAAAAAG
* *
36297519 AAACAAATCCATTGTTGGGTGACCAATATAA-
1 AAA-AAAT-CATAGTTGGGTGACCAA-AAAAG
* *
36297550 AAAAAATCATAGTTGAGTGACTAAAAAAG
1 AAAAAATCATAGTTGGGTGACCAAAAAAG
36297579 AAAA
1 AAAA
36297583 TGACCCATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
28 3 0.06
29 18 0.33
30 8 0.15
31 22 0.41
32 3 0.06
ACGTcount: A:0.51, C:0.11, G:0.17, T:0.21
Consensus pattern (29 bp):
AAAAAATCATAGTTGGGTGACCAAAAAAG
Found at i:36297600 original size:60 final size:59
Alignment explanation
Indices: 36297471--36297600 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 59
36297461 TAATCTTGTT
* * * *
36297471 TAGTTGGTGACCAAATTTAAAAAATTCATAGTTGGGTGACCAAAAAAGAAACAAATCCA
1 TAGTTGGTGACCAAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAGAAACAAACCCA
* * *
36297530 TTGTTGGGTGACC-AATATAAAAAAAATCATAGTTGAGTGACTAAAAAAGAAA-ATGACCCA
1 TAGTT-GGTGACCAAAT-TAAAAAAAATCATAGTTGAGTGACCAAAAAAGAAACA-AACCCA
36297590 TAGTTAGGTGA
1 TAGTT-GGTGA
36297601 GCTTATGGGT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 8 0.14
60 51 0.86
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.25
Consensus pattern (59 bp):
TAGTTGGTGACCAAATTAAAAAAAATCATAGTTGAGTGACCAAAAAAGAAACAAACCCA
Found at i:36307091 original size:20 final size:20
Alignment explanation
Indices: 36307066--36307105 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36307056 GTCAAATTTG
36307066 AGGACTAAATGATATTTTAT
1 AGGACTAAATGATATTTTAT
36307086 AGGACTAAATGATATTTTAT
1 AGGACTAAATGATATTTTAT
36307106 TCTTATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (20 bp):
AGGACTAAATGATATTTTAT
Found at i:36307869 original size:28 final size:31
Alignment explanation
Indices: 36307819--36307884 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 31
36307809 AGTCTATATC
* * *
36307819 TTTATAATTATTAAATGATTAAATTA-AA-T
1 TTTATAATTATTAAAGGAATAAAGTACAATT
36307848 TTTATAATT-TTAAAGGAATAAAGTACAATT
1 TTTATAATTATTAAAGGAATAAAGTACAATT
36307878 TTTATAA
1 TTTATAA
36307885 CCAGACCCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 13 0.41
29 11 0.34
30 8 0.25
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (31 bp):
TTTATAATTATTAAAGGAATAAAGTACAATT
Found at i:36312953 original size:25 final size:25
Alignment explanation
Indices: 36312881--36313049 Score: 98
Period size: 24 Copynumber: 6.8 Consensus size: 25
36312871 GCAGCTCTTA
* *
36312881 TGAGCGTCCCGTTATATGACTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTTCG
* *
36312907 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCG-TTAATGGCTCTTCG
* **
36312933 TGAGCTTCCTGTTAATGGCTCCCCG
1 TGAGCTTCCCGTTAATGGCTCTTCG
* * * * *
36312958 -GAGCTACCCGAT-ATAGCTC-ACT
1 TGAGCTTCCCGTTAATGGCTCTTCG
* * *
36312980 TGAACTTCCCGATATATGGCTATTCG
1 TGAGCTTCCCGTTA-ATGGCTCTTCG
*
36313006 -GAGCTTCCCATTAATGGCTCTT--
1 TGAGCTTCCCGTTAATGGCTCTTCG
* *
36313028 TAGAGCTACCCGTTATTGGCTC
1 T-GAGCTTCCCGTTAATGGCTC
36313050 ACATGAGCTT
Statistics
Matches: 108, Mismatches: 28, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
22 1 0.01
23 16 0.15
24 34 0.31
25 25 0.23
26 29 0.27
27 3 0.03
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTTCG
Found at i:36315841 original size:18 final size:18
Alignment explanation
Indices: 36315820--36315881 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
36315810 AAAAATTTAA
*
36315820 AAAAAATATGAAATTATT
1 AAAAAATATAAAATTATT
* *
36315838 AAAAAGTATAAAAATATAT
1 AAAAAATATAAAATTAT-T
* ** *
36315857 AAAAAAAATTTAATTTTT
1 AAAAAATATAAAATTATT
36315875 AAAAAAT
1 AAAAAAT
36315882 TAATTGTTAA
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
18 21 0.64
19 12 0.36
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (18 bp):
AAAAAATATAAAATTATT
Found at i:36315884 original size:15 final size:16
Alignment explanation
Indices: 36315859--36315891 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
36315849 AAATATATAA
*
36315859 AAAAAATTTAATTTTT
1 AAAAAATTTAATTGTT
36315875 AAAAAA-TTAATTGTT
1 AAAAAATTTAATTGTT
36315890 AA
1 AA
36315892 TGTGGTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAAAAATTTAATTGTT
Found at i:36319258 original size:15 final size:14
Alignment explanation
Indices: 36319209--36319259 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
36319199 CTAAAATTTA
*
36319209 ATAAATAAAAATAT
1 ATAAATTAAAATAT
36319223 ATAGAATTATTAAATAT
1 ATA-AATTA--AAATAT
36319240 -TAAATTAAAATAAT
1 ATAAATTAAAAT-AT
36319254 ATAAAT
1 ATAAAT
36319260 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.13
14 5 0.16
15 14 0.45
16 2 0.06
17 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:36322025 original size:64 final size:64
Alignment explanation
Indices: 36321940--36322110 Score: 236
Period size: 64 Copynumber: 2.7 Consensus size: 64
36321930 TATCGGGATG
* * * *
36321940 CTCATAAAGAGTTGCGGTATGTCAGCAATACATGTAGGATCAACACCGATCATATAACAGGACA
1 CTCACAAAGAGCTGCGGTATGTCAGCAACACATGCAGGATCAACACCGATCATATAACAGGACA
* * * *
36322004 CTCACAAAGAGCTGCGGTATGTCCGCAACACATGCAGGATCAATACCGATTATATAACAGGACG
1 CTCACAAAGAGCTGCGGTATGTCAGCAACACATGCAGGATCAACACCGATCATATAACAGGACA
* *
36322068 CTCACAAAGAGCTACGGTATGTTCA-AAACACATGCAGGATCAA
1 CTCACAAAGAGCTGCGGTATG-TCAGCAACACATGCAGGATCAA
36322111 TACCAATCGG
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
64 93 0.98
65 2 0.02
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (64 bp):
CTCACAAAGAGCTGCGGTATGTCAGCAACACATGCAGGATCAACACCGATCATATAACAGGACA
Found at i:36323751 original size:82 final size:81
Alignment explanation
Indices: 36323643--36323885 Score: 317
Period size: 82 Copynumber: 3.0 Consensus size: 81
36323633 TTCTTCGTAC
* * * *
36323643 TTTTGGAATTTAATTCCCTTACATTTATTTTAAGGAATTTAGCCTTTTTACTTTTTGAATTTGAA
1 TTTTAGAATTCAATCCCCTTACATTTATTTTAAGGAATTTAGCCTTTTTA-TTTTTGGATTTGAA
36323708 AATACAAATTCAATTAT
65 AATACAAATTCAATTAT
* * *
36323725 TTTTAGAATTCAATCCCCTTATATTTATTTTAAGGAATTTAGTCTCTTTATTTTTTGGATTTGAA
1 TTTTAGAATTCAATCCCCTTACATTTATTTTAAGGAATTTAGCCTTTTTA-TTTTTGGATTTGAA
36323790 AATACAAATTCAATTAT
65 AATACAAATTCAATTAT
* * * * * *
36323807 TTTTAGAATTCAATCTCCTTACATTT-TTTCAAGGAATTCAACCGTTTTATTTCTCGGATTTGAA
1 TTTTAGAATTCAATCCCCTTACATTTATTTTAAGGAATTTAGCCTTTTTATTT-TTGGATTTGAA
* *
36323871 ATTAGAAATTCAATT
65 AATACAAATTCAATT
36323886 GTTAACACAA
Statistics
Matches: 141, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
80 3 0.02
81 40 0.28
82 98 0.70
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.47
Consensus pattern (81 bp):
TTTTAGAATTCAATCCCCTTACATTTATTTTAAGGAATTTAGCCTTTTTATTTTTGGATTTGAAA
ATACAAATTCAATTAT
Found at i:36327521 original size:18 final size:17
Alignment explanation
Indices: 36327498--36327546 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
36327488 TTTTTTTTAA
*
36327498 TATTTATCATTATATCAT
1 TATTTATTATTATAT-AT
36327516 TATTTATTATTATTATAT
1 TATTTATTATTA-TATAT
36327534 TATTTATTATTAT
1 TATTTATTATTAT
36327547 GGTTATTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.03
18 25 0.86
19 3 0.10
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTATTATTATATAT
Found at i:36327530 original size:21 final size:21
Alignment explanation
Indices: 36327501--36327563 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
36327491 TTTTTAATAT
36327501 TTATCATTATATCATTATTTA
1 TTATCATTATATCATTATTTA
* *
36327522 TTATTATTATATTATT-TATTA
1 TTATCATTATATCATTAT-TTA
**
36327543 TTATGGTTATTATCATTATTT
1 TTATCATTA-TATCATTATTT
36327564 CTATATTCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.03
21 24 0.71
22 8 0.24
23 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TTATCATTATATCATTATTTA
Found at i:36327534 original size:15 final size:15
Alignment explanation
Indices: 36327497--36327561 Score: 51
Period size: 15 Copynumber: 4.1 Consensus size: 15
36327487 ATTTTTTTTA
*
36327497 ATATTTATCATTATAT
1 ATATTTATTATTAT-T
36327513 CATTATTTATTATTATT
1 -A-TATTTATTATTATT
36327530 ATA-TTATTTATTATT
1 ATATTTA-TTATTATT
** *
36327545 ATGGTTATTATCATT
1 ATATTTATTATTATT
36327560 AT
1 AT
36327562 TTCTATATTC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.07
15 21 0.50
16 4 0.10
17 2 0.05
18 12 0.29
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (15 bp):
ATATTTATTATTATT
Found at i:36327560 original size:18 final size:17
Alignment explanation
Indices: 36327501--36327562 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 17
36327491 TTTTTAATAT
36327501 TTATCATTA-TATCATTA
1 TTATCATTATTAT-ATTA
*
36327518 TTTATTATTATTATATTA
1 -TTATCATTATTATATTA
*
36327536 TT-T-ATTATTATGGTTA
1 TTATCATTATTAT-ATTA
36327552 TTATCATTATT
1 TTATCATTATT
36327563 TCTATATTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 8 0.21
16 6 0.16
17 3 0.08
18 18 0.47
19 3 0.08
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (17 bp):
TTATCATTATTATATTA
Found at i:36327679 original size:25 final size:24
Alignment explanation
Indices: 36327595--36327679 Score: 102
Period size: 25 Copynumber: 3.5 Consensus size: 24
36327585 TTTTTGCATA
*
36327595 ATATATACATATATGCATTTTTTT
1 ATATATATATATATGCATTTTTTT
* *
36327619 -TCATATAGTACATATGCATATTTTT
1 AT-ATATA-TATATATGCATTTTTTT
36327644 ATATATAATATATATGCATTTTTTT
1 ATATAT-ATATATATGCATTTTTTT
36327669 A-ATATATATAT
1 ATATATATATAT
36327680 TTTTAAGCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
23 7 0.13
24 9 0.17
25 34 0.65
26 2 0.04
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (24 bp):
ATATATATATATATGCATTTTTTT
Found at i:36327681 original size:17 final size:18
Alignment explanation
Indices: 36327649--36327683 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
36327639 TTTTTATATA
36327649 TAATATATATGCATTTTTT
1 TAATATATAT-CATTTTTT
36327668 TAATATATAT-ATTTTT
1 TAATATATATCATTTTT
36327684 AAGCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
TAATATATATCATTTTTT
Found at i:36327739 original size:10 final size:10
Alignment explanation
Indices: 36327724--36327762 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
36327714 TTCATACGTT
36327724 TTTTTATATA
1 TTTTTATATA
36327734 TTTTTATATA
1 TTTTTATATA
*
36327744 TTTTTA-AAA
1 TTTTTATATA
*
36327753 CTTTTATATA
1 TTTTTATATA
36327763 CTTTATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTTTATATA
Found at i:36328963 original size:18 final size:19
Alignment explanation
Indices: 36328923--36328964 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
36328913 TGAAAAAAGT
* *
36328923 ATATTTTTTATTAATTTAT
1 ATATTTTTAATTAATTTAA
*
36328942 ATATTTTTAATT-TTTTAA
1 ATATTTTTAATTAATTTAA
36328960 ATATT
1 ATATT
36328965 AAAATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
ATATTTTTAATTAATTTAA
Found at i:36334287 original size:2 final size:2
Alignment explanation
Indices: 36334282--36334306 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36334272 TAAAACAGAA
36334282 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36334307 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36334494 original size:2 final size:2
Alignment explanation
Indices: 36334487--36334516 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36334477 AAAGACCAGA
*
36334487 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36334517 GAAAGGACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36340234 original size:10 final size:10
Alignment explanation
Indices: 36340196--36340243 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
36340186 TTAATGGGTT
36340196 TTTATATT-A
1 TTTATATTAA
36340205 -TT-TATTAA
1 TTTATATTAA
*
36340213 TTTAT-CTAA
1 TTTATATTAA
36340222 TTTATATTAA
1 TTTATATTAA
*
36340232 TTTATATAAA
1 TTTATATTAA
36340242 TT
1 TT
36340244 GATTGAATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
7 4 0.12
8 3 0.09
9 10 0.31
10 15 0.47
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTATATTAA
Found at i:36340622 original size:25 final size:24
Alignment explanation
Indices: 36340574--36340631 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
36340564 ATTTTAGAAT
*
36340574 TTTTTTTTAATTTTAAAGAGTTTAA
1 TTTTTTATAATTTTAAAGAGTTT-A
*
36340599 TTTTTTATAATTTTGAAA-ATTTTA
1 TTTTTTATAATTTT-AAAGAGTTTA
36340623 TGTTTTTAT
1 T-TTTTTAT
36340632 TTAAAATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.07
25 24 0.83
26 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (24 bp):
TTTTTTATAATTTTAAAGAGTTTA
Found at i:36341944 original size:40 final size:42
Alignment explanation
Indices: 36341881--36341962 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 42
36341871 TTTAATCAAA
***
36341881 TTTAAAAAATAATTTTCACA-TTTT-AAATAAAAATATAAAT
1 TTTAAAAAATAAAAATCACATTTTTAAAATAAAAATATAAAT
* *
36341921 TTTAAAAAATAAAAATCATATTTTTTAAAATAAAATTATAAA
1 TTTAAAAAATAAAAATCACA-TTTTTAAAATAAAAATATAAA
36341963 AAGATAAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
40 16 0.47
42 4 0.12
43 14 0.41
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (42 bp):
TTTAAAAAATAAAAATCACATTTTTAAAATAAAAATATAAAT
Found at i:36341946 original size:23 final size:22
Alignment explanation
Indices: 36341905--36341962 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
36341895 TTCACATTTT
36341905 AAATAAAAATATAAATTTTAAA
1 AAATAAAAATATAAATTTTAAA
**
36341927 AAATAAAAATCAT--ATTTTTTA
1 AAATAAAAAT-ATAAATTTTAAA
*
36341948 AAATAAAATTATAAA
1 AAATAAAAATATAAA
36341963 AAGATAAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 2 0.07
21 15 0.50
22 11 0.37
23 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATAAAAATATAAATTTTAAA
Found at i:36342779 original size:15 final size:14
Alignment explanation
Indices: 36342759--36342811 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 14
36342749 AACTGAAGTC
36342759 TTAATTTATTTTATA
1 TTAATTT-TTTTATA
36342774 TTAA-TTTTTTATA
1 TTAATTTTTTTATA
36342787 --AATATATTTTTATA
1 TTAAT-T-TTTTTATA
36342801 -TAATTTTTTTA
1 TTAATTTTTTTA
36342812 CCTATCAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
11 2 0.06
13 14 0.41
14 11 0.32
15 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTAATTTTTTTATA
Found at i:36349053 original size:2 final size:2
Alignment explanation
Indices: 36349046--36349110 Score: 114
Period size: 2 Copynumber: 33.0 Consensus size: 2
36349036 AATATGTACT
36349046 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A- AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
36349087 AC AC AC AC AC AC AC AC AC AT AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC
36349111 TTCATTCCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 59 0.98
ACGTcount: A:0.51, C:0.48, G:0.00, T:0.02
Consensus pattern (2 bp):
AC
Found at i:36355433 original size:951 final size:951
Alignment explanation
Indices: 36353936--36355838 Score: 3788
Period size: 951 Copynumber: 2.0 Consensus size: 951
36353926 TTTCTTATAT
36353936 TATGTTTGGTAATATAAATTATAATTAAAAAGTTAAATATTTATATTTTTAAAAATATTAATTAC
1 TATGTTTGGTAATATAAATTATAATTAAAAAGTTAAATATTTATATTTTTAAAAATATTAATTAC
36354001 TATAAAAAAAGTATTCGTATGATACAAATAATTTTTAAACAAGTAACAAAAATAAAAATCGAATT
66 TATAAAAAAAGTATTCGTATGATACAAATAATTTTTAAACAAGTAACAAAAATAAAAATCGAATT
36354066 TTCGTATGTATTATGTTAGTTTTAAAAAGTAGTTGATTTGCGATTACAAATAAAAATAATAAGAA
131 TTCGTATGTATTATGTTAGTTTTAAAAAGTAGTTGATTTGCGATTACAAATAAAAATAATAAGAA
36354131 AAATAAACATCATATGTAATTTTATCTAATTGTTCTCTTACTGTCTTACATATTTGTTGAGTTAT
196 AAATAAACATCATATGTAATTTTATCTAATTGTTCTCTTACTGTCTTACATATTTGTTGAGTTAT
36354196 TCTCTCTTTAATATTTAACATATACTTCTTATTTTTATATGTTGGTCATTGACCGAATTTATCAT
261 TCTCTCTTTAATATTTAACATATACTTCTTATTTTTATATGTTGGTCATTGACCGAATTTATCAT
36354261 CACCTAAACTTGAATCTGCATAATTAAGATTATCAATATCTCTTTCTTCCTTGTGCTTTTCAAAA
326 CACCTAAACTTGAATCTGCATAATTAAGATTATCAATATCTCTTTCTTCCTTGTGCTTTTCAAAA
36354326 TATGGATCATCTCAATTCCACCTACAATTCAAGTTATGAAATATGCAACATGATAGTACGATCCA
391 TATGGATCATCTCAATTCCACCTACAATTCAAGTTATGAAATATGCAACATGATAGTACGATCCA
36354391 ATTTTCTTTTTTTTTTTTATGTTATACTGAGGTGACATTAATATGAAAATTATTTTCTTAGAACA
456 ATTTTCTTTTTTTTTTTTATGTTATACTGAGGTGACATTAATATGAAAATTATTTTCTTAGAACA
36354456 ATAAATATCTTCTCAACCACATTTCGAAGTTTTGAATATCTCAAATTAAAGAATTTGCAAGCTGT
521 ATAAATATCTTCTCAACCACATTTCGAAGTTTTGAATATCTCAAATTAAAGAATTTGCAAGCTGT
36354521 CAATGGTACTTGTGTCTAGCATCATTCTCTCAAATGATATCATACCCCACGATATGGTGTAATAA
586 CAATGGTACTTGTGTCTAGCATCATTCTCTCAAATGATATCATACCCCACGATATGGTGTAATAA
36354586 AGTCTTTTGTATTTACATCAATAGTATCATCCTTATAATATTATGTTTACAGTTCAAAGTGTCTA
651 AGTCTTTTGTATTTACATCAATAGTATCATCCTTATAATATTATGTTTACAGTTCAAAGTGTCTA
36354651 TAGCCAATGGCGTATCTAGGGGGGCTGGTAGGGGCCCCGACCCCCATAAAATGGAAAACTATTCA
716 TAGCCAATGGCGTATCTAGGGGGGCTGGTAGGGGCCCCGACCCCCATAAAATGGAAAACTATTCA
36354716 TTTAGGCCATTTAGAAATTTTAAAATTTTAAATTAGTAAAGATAAAAATACACTTTGTCCCATCC
781 TTTAGGCCATTTAGAAATTTTAAAATTTTAAATTAGTAAAGATAAAAATACACTTTGTCCCATCC
36354781 TAAAAATGCTAAAAATTTAATTTAATCATTTAAAAATTATAAAGATATAAGTTTAAAAATTACAA
846 TAAAAATGCTAAAAATTTAATTTAATCATTTAAAAATTATAAAGATATAAGTTTAAAAATTACAA
*
36354846 TTTAATTTTGCCCCCTTAAAAAAAATTTTTGGCTTCACCCC
911 TTTAATTTTGCCCCATTAAAAAAAATTTTTGGCTTCACCCC
36354887 TATGTTTGGTAATATAAATTATAATTAAAAAGTTAAATATTTATATTTTTAAAAATATTAATTAC
1 TATGTTTGGTAATATAAATTATAATTAAAAAGTTAAATATTTATATTTTTAAAAATATTAATTAC
36354952 TATAAAAAAAGTATTCGTATGATACAAATAATTTTTAAACAAGTAACAAAAATAAAAATCGAATT
66 TATAAAAAAAGTATTCGTATGATACAAATAATTTTTAAACAAGTAACAAAAATAAAAATCGAATT
36355017 TTCGTATGTATTATGTTAGTTTTAAAAAGTAGTTGATTTGCGATTACAAATAAAAATAATAAGAA
131 TTCGTATGTATTATGTTAGTTTTAAAAAGTAGTTGATTTGCGATTACAAATAAAAATAATAAGAA
36355082 AAATAAACATCATATGTAATTTTATCTAATTGTTCTCTTACTGTCTTACATATTTGTTGAGTTAT
196 AAATAAACATCATATGTAATTTTATCTAATTGTTCTCTTACTGTCTTACATATTTGTTGAGTTAT
36355147 TCTCTCTTTAATATTTAACATATACTTCTTATTTTTATATGTTGGTCATTGACCGAATTTATCAT
261 TCTCTCTTTAATATTTAACATATACTTCTTATTTTTATATGTTGGTCATTGACCGAATTTATCAT
36355212 CACCTAAACTTGAATCTGCATAATTAAGATTATCAATATCTCTTTCTTCCTTGTGCTTTTCAAAA
326 CACCTAAACTTGAATCTGCATAATTAAGATTATCAATATCTCTTTCTTCCTTGTGCTTTTCAAAA
36355277 TATGGATCATCTCAATTCCACCTACAATTCAAGTTATGAAATATGCAACATGATAGTACGATCCA
391 TATGGATCATCTCAATTCCACCTACAATTCAAGTTATGAAATATGCAACATGATAGTACGATCCA
36355342 ATTTTCTTTTTTTTTTTTATGTTATACTGAGGTGACATTAATATGAAAATTATTTTCTTAGAACA
456 ATTTTCTTTTTTTTTTTTATGTTATACTGAGGTGACATTAATATGAAAATTATTTTCTTAGAACA
36355407 ATAAATATCTTCTCAACCACATTTCGAAGTTTTGAATATCTCAAATTAAAGAATTTGCAAGCTGT
521 ATAAATATCTTCTCAACCACATTTCGAAGTTTTGAATATCTCAAATTAAAGAATTTGCAAGCTGT
36355472 CAATGGTACTTGTGTCTAGCATCATTCTCTCAAATGATATCATACCCCACGATATGGTGTAATAA
586 CAATGGTACTTGTGTCTAGCATCATTCTCTCAAATGATATCATACCCCACGATATGGTGTAATAA
36355537 AGTCTTTTGTATTTACATCAATAGTATCATCCTTATAATATTATGTTTACAGTTCAAAGTGTCTA
651 AGTCTTTTGTATTTACATCAATAGTATCATCCTTATAATATTATGTTTACAGTTCAAAGTGTCTA
36355602 TAGCCAATGGCGTATCTAGGGGGGCTGGTAGGGGCCCCGACCCCCATAAAATGGAAAACTATTCA
716 TAGCCAATGGCGTATCTAGGGGGGCTGGTAGGGGCCCCGACCCCCATAAAATGGAAAACTATTCA
36355667 TTTAGGCCATTTAGAAATTTTAAAATTTTAAATTAGTAAAGATAAAAATACACTTTGTCCCATCC
781 TTTAGGCCATTTAGAAATTTTAAAATTTTAAATTAGTAAAGATAAAAATACACTTTGTCCCATCC
36355732 TAAAAATGCTAAAAATTTAATTTAATCATTTAAAAATTATAAAGATATAAGTTTAAAAATTACAA
846 TAAAAATGCTAAAAATTTAATTTAATCATTTAAAAATTATAAAGATATAAGTTTAAAAATTACAA
*
36355797 TTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCC
911 TTTAATTTTGCCCCATTAAAAAAAATTTTTGGCTTCACCCC
36355838 T
1 T
36355839 GTCTATAGCT
Statistics
Matches: 950, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
951 950 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (951 bp):
TATGTTTGGTAATATAAATTATAATTAAAAAGTTAAATATTTATATTTTTAAAAATATTAATTAC
TATAAAAAAAGTATTCGTATGATACAAATAATTTTTAAACAAGTAACAAAAATAAAAATCGAATT
TTCGTATGTATTATGTTAGTTTTAAAAAGTAGTTGATTTGCGATTACAAATAAAAATAATAAGAA
AAATAAACATCATATGTAATTTTATCTAATTGTTCTCTTACTGTCTTACATATTTGTTGAGTTAT
TCTCTCTTTAATATTTAACATATACTTCTTATTTTTATATGTTGGTCATTGACCGAATTTATCAT
CACCTAAACTTGAATCTGCATAATTAAGATTATCAATATCTCTTTCTTCCTTGTGCTTTTCAAAA
TATGGATCATCTCAATTCCACCTACAATTCAAGTTATGAAATATGCAACATGATAGTACGATCCA
ATTTTCTTTTTTTTTTTTATGTTATACTGAGGTGACATTAATATGAAAATTATTTTCTTAGAACA
ATAAATATCTTCTCAACCACATTTCGAAGTTTTGAATATCTCAAATTAAAGAATTTGCAAGCTGT
CAATGGTACTTGTGTCTAGCATCATTCTCTCAAATGATATCATACCCCACGATATGGTGTAATAA
AGTCTTTTGTATTTACATCAATAGTATCATCCTTATAATATTATGTTTACAGTTCAAAGTGTCTA
TAGCCAATGGCGTATCTAGGGGGGCTGGTAGGGGCCCCGACCCCCATAAAATGGAAAACTATTCA
TTTAGGCCATTTAGAAATTTTAAAATTTTAAATTAGTAAAGATAAAAATACACTTTGTCCCATCC
TAAAAATGCTAAAAATTTAATTTAATCATTTAAAAATTATAAAGATATAAGTTTAAAAATTACAA
TTTAATTTTGCCCCATTAAAAAAAATTTTTGGCTTCACCCC
Found at i:36357267 original size:784 final size:782
Alignment explanation
Indices: 36355783--36357350 Score: 2862
Period size: 784 Copynumber: 2.0 Consensus size: 782
36355773 AAGATATAAG
36355783 TTTAAAAATTACAATTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCCTGTCTATAGC
1 TTTAAAAATTACAATTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCCTGTCTATAGC
36355848 TTTAACTATAAAAATTATACAAACTTATTTGAAGAAAAAATTATGTTATATACCTTTTTATAATA
66 TTTAACTATAAAAATTATACAAACTTATTTGAAGAAAAAATTATGTTATATACCTTTTTATAATA
36355913 GGTAAATAAAGTAAAAAATAATATAAATTTTATAATATATAACCTTTATAAAAGAATTTATAAAT
131 GGTAAATAAAGTAAAAAATAATATAAATTTTATAATATATAACCTTTATAAAAGAATTTATAAAT
36355978 TTTCTAATAACTTTCATTACACTTCTTAAAAATAATATAATTTTTTCCATAACTTTAAAATTTTA
196 TTTCTAATAACTTTCATTACACTTCTTAAAAATAATATAATTTTTTCCATAACTTTAAAATTTTA
36356043 TTTTTTATAAATAAGTTATGATAAAATAAACTATAATGTTTTTTTATGAATAAGTATATTACTTT
261 TTTTTTATAAATAAGTTATGATAAAATAAACTATAATGTTTTTTTATGAATAAGTATATTACTTT
* **
36356108 TATAATATATAGCATGAACACATAAATAAGTTATGTCCATACTTTTTCACCGTAAGTTTTTATAA
326 TATAATATATAGCATGAACACATAAATAAGTTATGTCCATAC-TTTTCACCATAACCTTTTATAA
* * * * ** * *
36356173 ATAAATATATTATAATATTTTTATAATATGTAAATTATTATTTATGCTAAACTTTTTTTTATCAT
390 ATAAATATATTATAACATTTTTATAACATGTAAATTATTATTTAGGCCAAACTTTAATTTAGCAG
36356238 ACCTTTAGAAATTTTTTAGAATTTAAATAATATAATTTTCATAACCATTTCAAACACTTACACGT
455 A-CTTTAGAAATTTTTTAGAATTTAAATAATATAATTTTCATAACCATTTCAAACACTTACACGT
36356303 GTTCTTGCTTATAATATAATTTTTATAACTTGTATAAAAATAATTTAAAAAAAAATAGATTTAAG
519 GTTCTTGCTTATAATATAATTTTTATAACTTGTATAAAAATAATTTAAAAAAAAATAGATTTAAG
36356368 TGTAATTACTTGCGTAATTATTCTAATTCTCACTCTCTCCTAAGAAATGAAGAGTATAATTACAC
584 TGTAATTACTTGCGTAATTATTCTAATTCTCACTCTCTCCTAAGAAATGAAGAGTATAATTACAC
36356433 CCAATCCAGTGAGACCCACCAATTACAATGATTACCCAAGTATGACACCATTGTGTAATTACAAG
649 CCAATCCAGTGAGACCCACCAATTACAATGATTACCCAAGTATGACACCATTGTGTAATTACAAG
36356498 CAATTACACCTAAATATTACTAGGTGGTTTTCCAAACACTACCTAGGTTAAAAAATGACATTAGG
714 CAATTACACCTAAATATTACTAGGTGGTTTTCCAAACACTACCTAGGTTAAAAAATGACATTAGG
36356563 TAAA
779 TAAA
36356567 TTTAAAAATTACAATTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCCTGTCTATAGC
1 TTTAAAAATTACAATTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCCTGTCTATAGC
36356632 TTTAACTATAAAAATTATACAAACTTATTTGAAGAAAAAATTATGTTATATACCTTTTTATAATA
66 TTTAACTATAAAAATTATACAAACTTATTTGAAGAAAAAATTATGTTATATACCTTTTTATAATA
36356697 GGTAAATAAAGTAAAAAATAATATAAATTTTATAATATATAACCTTTATAAAAGAATTTATAAAT
131 GGTAAATAAAGTAAAAAATAATATAAATTTTATAATATATAACCTTTATAAAAGAATTTATAAAT
36356762 TTTCTAATAACTTTCATTACACTTCTTAAAAATAATATAATTTTTTCCATAACTTTAAAATTTTA
196 TTTCTAATAACTTTCATTACACTTCTTAAAAATAATATAATTTTTTCCATAACTTTAAAATTTTA
36356827 TTTTTTATAAATAAGTTATGATAAAATAAACTATAATGTTTTTTTATGAATAAGTATATTACTTT
261 TTTTTTATAAATAAGTTATGATAAAATAAACTATAATGTTTTTTTATGAATAAGTATATTACTTT
* *
36356892 TATAATATATAGCATGAACACATAAATAAGTTATGTCCATA-TTTT-GCCATACCCTTTTATAAA
326 TATAATATATAGCATGAACACATAAATAAGTTATGTCCATACTTTTCACCATAACCTTTTATAAA
36356955 TAAATATATTATAACATTTTTATAACATGTAAA-TATT-TTT-GGCCATAACTTTAGAAAATTT-
391 TAAATATATTATAACATTTTTATAACATGTAAATTATTATTTAGGCCA-AACTTT----AATTTA
*
36357016 GCAGGA-TTTAAATAATATTTTTTAGAATTTAAATAATATAATTTTCATAACCATTTCAAACACT
451 GCA-GACTTT--AGAA-ATTTTTTAGAATTTAAATAATATAATTTTCATAACCATTTCAAACACT
36357080 TACACGTGTTCTTGCTTATAATATAATTTTTATAACTTGTATAAAAATAATTTAAAAAAAAATAG
512 TACACGTGTTCTTGCTTATAATATAATTTTTATAACTTGTATAAAAATAATTTAAAAAAAAATAG
36357145 ATTTAAGTGTAATTACTTGCGTAATTATTCTAATTCTCACTCTCTCCTAAGAAATGAAGAGTATA
577 ATTTAAGTGTAATTACTTGCGTAATTATTCTAATTCTCACTCTCTCCTAAGAAATGAAGAGTATA
36357210 ATTACACCCAATCCAGTGAGACCCACCAATTACAATGATTACCCAAGTATGACACCATTGTGTAA
642 ATTACACCCAATCCAGTGAGACCCACCAATTACAATGATTACCCAAGTATGACACCATTGTGTAA
36357275 TTACAAGCAATTACACCTAAATATTACTAGGTGGTTTTCCAAACACTACCTAGGTTAAAAAATGA
707 TTACAAGCAATTACACCTAAATATTACTAGGTGGTTTTCCAAACACTACCTAGGTTAAAAAATGA
36357340 CATTAGGTAAA
772 CATTAGGTAAA
36357351 AGGAAATTAA
Statistics
Matches: 761, Mismatches: 14, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
778 3 0.00
779 9 0.01
780 4 0.01
781 47 0.06
782 6 0.01
783 7 0.01
784 685 0.90
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (782 bp):
TTTAAAAATTACAATTTAATTTTGCCCCATTAAAAAGAATTTTTGGCTTCACCCCTGTCTATAGC
TTTAACTATAAAAATTATACAAACTTATTTGAAGAAAAAATTATGTTATATACCTTTTTATAATA
GGTAAATAAAGTAAAAAATAATATAAATTTTATAATATATAACCTTTATAAAAGAATTTATAAAT
TTTCTAATAACTTTCATTACACTTCTTAAAAATAATATAATTTTTTCCATAACTTTAAAATTTTA
TTTTTTATAAATAAGTTATGATAAAATAAACTATAATGTTTTTTTATGAATAAGTATATTACTTT
TATAATATATAGCATGAACACATAAATAAGTTATGTCCATACTTTTCACCATAACCTTTTATAAA
TAAATATATTATAACATTTTTATAACATGTAAATTATTATTTAGGCCAAACTTTAATTTAGCAGA
CTTTAGAAATTTTTTAGAATTTAAATAATATAATTTTCATAACCATTTCAAACACTTACACGTGT
TCTTGCTTATAATATAATTTTTATAACTTGTATAAAAATAATTTAAAAAAAAATAGATTTAAGTG
TAATTACTTGCGTAATTATTCTAATTCTCACTCTCTCCTAAGAAATGAAGAGTATAATTACACCC
AATCCAGTGAGACCCACCAATTACAATGATTACCCAAGTATGACACCATTGTGTAATTACAAGCA
ATTACACCTAAATATTACTAGGTGGTTTTCCAAACACTACCTAGGTTAAAAAATGACATTAGGTA
AA
Found at i:36358139 original size:119 final size:119
Alignment explanation
Indices: 36358006--36358244 Score: 462
Period size: 119 Copynumber: 2.0 Consensus size: 119
36357996 AAAAAATTAT
36358006 AAAAAATAATTTTAATAATTTTAAAA-TTTTTAAAAATTAATTAAATGCTAATATGTCATCCACG
1 AAAAAATAATTTTAATAATTTTAAAATTTTTTAAAAATT-ATTAAATGCTAATATGTCATCCACG
36358070 TGACAATCCCCGTTTATACCATATCAATCAATTTGGAAGTAATGCAAATTCAAAA
65 TGACAATCCCCGTTTATACCATATCAATCAATTTGGAAGTAATGCAAATTCAAAA
36358125 AAAAAATAATTTTAATAATTTTAAAATTTTTTAAAAATTATTAAATGCTAATATGTCATCCACGT
1 AAAAAATAATTTTAATAATTTTAAAATTTTTTAAAAATTATTAAATGCTAATATGTCATCCACGT
36358190 GACAATCCCCGTTTATACCATATCAATCAATTTGGAAGTAATGCAAATTCAAAA
66 GACAATCCCCGTTTATACCATATCAATCAATTTGGAAGTAATGCAAATTCAAAA
36358244 A
1 A
36358245 CTAAAAAAGA
Statistics
Matches: 119, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
119 107 0.90
120 12 0.10
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (119 bp):
AAAAAATAATTTTAATAATTTTAAAATTTTTTAAAAATTATTAAATGCTAATATGTCATCCACGT
GACAATCCCCGTTTATACCATATCAATCAATTTGGAAGTAATGCAAATTCAAAA
Found at i:36363550 original size:9 final size:9
Alignment explanation
Indices: 36363519--36363552 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
36363509 TTATTTGTAC
*
36363519 TTTTTTAGA
1 TTTTTTAAA
*
36363528 TTTTATAAA
1 TTTTTTAAA
36363537 TTTTTTAAA
1 TTTTTTAAA
36363546 TTTTTTA
1 TTTTTTA
36363553 GGAAATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:36371070 original size:20 final size:20
Alignment explanation
Indices: 36371045--36371107 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
36371035 TATTTAATAA
36371045 TAAAAATCTAGCTATTTTAC
1 TAAAAATCTAGCTATTTTAC
* * *
36371065 TAAAAA--AAGATACATTT--
1 TAAAAATCTAGCTA-TTTTAC
36371082 TAAAAATCTAGCTATTTTAC
1 TAAAAATCTAGCTATTTTAC
36371102 TAAAAA
1 TAAAAA
36371108 AAGATATATT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 6 0.19
18 7 0.22
19 7 0.22
20 12 0.38
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (20 bp):
TAAAAATCTAGCTATTTTAC
Found at i:36371095 original size:37 final size:37
Alignment explanation
Indices: 36371045--36371122 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
36371035 TATTTAATAA
36371045 TAAAAATCTAGCTATTTTACTAAAAAAAGATACATTT
1 TAAAAATCTAGCTATTTTACTAAAAAAAGATACATTT
*
36371082 TAAAAATCTAGCTATTTTACTAAAAAAAGATATATTT
1 TAAAAATCTAGCTATTTTACTAAAAAAAGATACATTT
36371119 TAAA
1 TAAA
36371123 TAAGGTATCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (37 bp):
TAAAAATCTAGCTATTTTACTAAAAAAAGATACATTT
Found at i:36371117 original size:20 final size:20
Alignment explanation
Indices: 36371057--36371120 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
36371047 AAAATCTAGC
36371057 TATTTTACTAAAAAAAGATA
1 TATTTTACTAAAAAAAGATA
* ** *
36371077 CATTTTA--AAAATCTAG--C
1 TATTTTACTAAAA-AAAGATA
36371094 TATTTTACTAAAAAAAGATA
1 TATTTTACTAAAAAAAGATA
36371114 TATTTTA
1 TATTTTA
36371121 AATAAGGTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 6 0.19
20 13 0.42
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (20 bp):
TATTTTACTAAAAAAAGATA
Found at i:36371550 original size:28 final size:29
Alignment explanation
Indices: 36371499--36371553 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
36371489 TTTTTTAAAG
* * *
36371499 TTATTTTTACTATTTTAAATATAAAATAT
1 TTATTTCTACTATTTAAAAAATAAAATAT
36371528 TTATTTCTAC-ATTTAAAAAATAAAAT
1 TTATTTCTACTATTTAAAAAATAAAAT
36371554 TAATCAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 14 0.61
29 9 0.39
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (29 bp):
TTATTTCTACTATTTAAAAAATAAAATAT
Found at i:36374858 original size:60 final size:60
Alignment explanation
Indices: 36374785--36374911 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
36374775 TAATCAACTA
* * * * *
36374785 AACTATTAGTAAATT-TCTTATCTAGTCATCTAATTATGAAAATTTACAAAATGGTCATCC
1 AACTATTAGTAAATTCT-TTATCTAGTCACCTAACTATGAAAAGTTACAAAATCGTCACCC
* * *
36374845 AACTATTAGTAAATTCTTTTTTTGGTCACCTAACTATGAAAAGTTACAAAATCGTCACCC
1 AACTATTAGTAAATTCTTTATCTAGTCACCTAACTATGAAAAGTTACAAAATCGTCACCC
*
36374905 AATTATT
1 AACTATT
36374912 CAATTTTGTC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 56 0.98
61 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (60 bp):
AACTATTAGTAAATTCTTTATCTAGTCACCTAACTATGAAAAGTTACAAAATCGTCACCC
Found at i:36375165 original size:61 final size:60
Alignment explanation
Indices: 36375091--36375225 Score: 175
Period size: 61 Copynumber: 2.2 Consensus size: 60
36375081 GACAAAATTG
*
36375091 AATAGTTTA-GTGACCATTTTGTAACTTTTCATG-GTTGGGTAACCAAATAAAGAAATTTACT
1 AATAG-TTAGGTGACCATTTTGTAACTTCTCA-GAGTTGGGTAACCAAA-AAAGAAATTTACT
* * *
36375152 AATAGTTAGGTGACCATTTTGTAGCTTCTCAGAGTTGGGTGACCAAAGAAGAAATTTACT
1 AATAGTTAGGTGACCATTTTGTAACTTCTCAGAGTTGGGTAACCAAAAAAGAAATTTACT
* *
36375212 AATATTTGGGTGAC
1 AATAGTTAGGTGAC
36375226 TACTAGTGTG
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
60 28 0.42
61 38 0.58
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (60 bp):
AATAGTTAGGTGACCATTTTGTAACTTCTCAGAGTTGGGTAACCAAAAAAGAAATTTACT
Found at i:36381096 original size:15 final size:16
Alignment explanation
Indices: 36381076--36381106 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36381066 CATAATCTAT
36381076 TAAAAAC-AATAAAAA
1 TAAAAACAAATAAAAA
36381091 TAAAAACAAATAAAAA
1 TAAAAACAAATAAAAA
36381107 AATTGCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
TAAAAACAAATAAAAA
Found at i:36381863 original size:31 final size:32
Alignment explanation
Indices: 36381828--36381888 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
36381818 ATTACTTAAT
36381828 TATTC-AAAAGTTTTCATTTAAGTCATTGAAC
1 TATTCGAAAAGTTTTCATTTAAGTCATTGAAC
** * *
36381859 TATTCGAAATTTTTTTATTTAAGTCGTTGA
1 TATTCGAAAAGTTTTCATTTAAGTCATTGA
36381889 TTTGTTAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 5 0.20
32 20 0.80
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.48
Consensus pattern (32 bp):
TATTCGAAAAGTTTTCATTTAAGTCATTGAAC
Found at i:36398206 original size:22 final size:22
Alignment explanation
Indices: 36398174--36398215 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
36398164 CTATCAAGGA
36398174 TGTCACAACACCAAAGCTTGGG
1 TGTCACAACACCAAAGCTTGGG
* **
36398196 TGTCACGACACGGAAGCTTG
1 TGTCACAACACCAAAGCTTG
36398216 ACGAGGTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (22 bp):
TGTCACAACACCAAAGCTTGGG
Found at i:36400638 original size:19 final size:19
Alignment explanation
Indices: 36400614--36400690 Score: 100
Period size: 19 Copynumber: 4.1 Consensus size: 19
36400604 AATTTTTGAG
36400614 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
36400633 GATATGTAATCCTAGATAT
1 GATATGCAATCTTAGATAT
*
36400652 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
36400671 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36400690 G
1 G
36400691 CAATCTTAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36400651 original size:33 final size:32
Alignment explanation
Indices: 36400614--36400707 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 32
36400604 AATTTTTGAG
36400614 GATATGCAATCTTAGATATGATATGTAATCCTA
1 GATATGCAATCTTAGATAT-ATATGTAATCCTA
* *
36400647 GATATAATATGCAATCTTAGATATAATATATAATCTTA
1 G-----ATATGCAATCTTAGATAT-ATATGTAATCCTA
36400685 GATATGCAATCTTAGA-ATATATG
1 GATATGCAATCTTAGATATATATG
36400708 ATTTTGTAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
31 4 0.08
32 2 0.04
33 16 0.31
38 30 0.58
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (32 bp):
GATATGCAATCTTAGATATATATGTAATCCTA
Found at i:36400657 original size:38 final size:38
Alignment explanation
Indices: 36400615--36400689 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
36400605 ATTTTTGAGG
* *
36400615 ATATGCAATCTTAGATATGATATGTAATCCTAGATATA
1 ATATGCAATCTTAGATATAATATATAATCCTAGATATA
*
36400653 ATATGCAATCTTAGATATAATATATAATCTTAGATAT
1 ATATGCAATCTTAGATATAATATATAATCCTAGATAT
36400690 GCAATCTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (38 bp):
ATATGCAATCTTAGATATAATATATAATCCTAGATATA
Found at i:36407744 original size:44 final size:44
Alignment explanation
Indices: 36406669--36407724 Score: 1686
Period size: 44 Copynumber: 24.0 Consensus size: 44
36406659 ATCAGTAAAA
*
36406669 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAA
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36406713 ACAGTAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAA
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36406757 ACAGTAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAA
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36406801 ACAGTAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36406845 ATAGCAGACCTTGCCTCCCTCGGTAGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36406889 ACAGGAGACCTTGCCTCCCTCGATGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36406933 ACAAG-AGACCTTGCCTCCCTCGATTGTAGTGGAGCTGGTTGAAG
1 AC-AGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36406977 ACAGCAGACCTTGCCCCCCTCGGTGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* * *
36407021 ACAACAGACCTTGCCTCCCTCGATGGTAGTGGAGCTAGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407065 ACAGGAGACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407109 ACAGCAGACCTTGCCTCCCTCGATAGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407153 ACAGCAGACCTTACCTCCCTCGATGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36407197 ACAGCAGACCTTGCCTCCCTCGGTAGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407241 ACAGCAGACCTTGCCTCCCTCGATGGTAGTGAAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36407285 ACAGCAGACCTTGCCTCCCTCGATGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407329 ACATG-AGACATTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAA
1 ACA-GCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36407373 ACAGTAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36407417 ACAGCAGACCTTGCCTCCCTCGATGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407461 ACAGGAGACCTTGCCTCCCTCGATGGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* * *
36407505 ACAGGAGACATTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407549 ACAGTAGACCTTGCCTCCCTCGGTAGTAGTGGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
*
36407593 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTAGAGCTGGTTGAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407637 ACAGCAGACCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTAAAG
1 ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
* *
36407681 ACAGCA-AGCCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAG
1 ACAGCAGA-CCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
36407725 CCACCAAGCC
Statistics
Matches: 951, Mismatches: 56, Indels: 10
0.94 0.06 0.01
Matches are distributed among these distances:
43 4 0.00
44 944 0.99
45 3 0.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (44 bp):
ACAGCAGACCTTGCCTCCCTCGGTGGTAGTGGAGCTGGTTGAAG
Found at i:36408718 original size:19 final size:19
Alignment explanation
Indices: 36408694--36408782 Score: 133
Period size: 19 Copynumber: 4.6 Consensus size: 19
36408684 AATTTTTGAG
36408694 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36408713 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
36408732 GATATGCAATCTCTTAGATAT
1 GATATGCAA--TCTTAGATAT
**
36408753 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36408772 GATATGCAATC
1 GATATGCAATC
36408783 GGGAGAAGGT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
19 46 0.74
21 16 0.26
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36408754 original size:40 final size:40
Alignment explanation
Indices: 36408694--36408782 Score: 137
Period size: 40 Copynumber: 2.3 Consensus size: 40
36408684 AATTTTTGAG
*
36408694 GATATGCAA--TCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTCTTAGATATGATATACAATCCTAGATAT
* *
36408732 GATATGCAATCTCTTAGATATGATATATAATCTTAGATAT
1 GATATGCAATCTCTTAGATATGATATACAATCCTAGATAT
36408772 GATATGCAATC
1 GATATGCAATC
36408783 GGGAGAAGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 9 0.20
40 37 0.80
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (40 bp):
GATATGCAATCTCTTAGATATGATATACAATCCTAGATAT
Found at i:36414830 original size:7 final size:7
Alignment explanation
Indices: 36414818--36414842 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36414808 TTATAAAAAT
36414818 ATATAAA
1 ATATAAA
36414825 ATATAAA
1 ATATAAA
36414832 ATATAAA
1 ATATAAA
36414839 ATAT
1 ATAT
36414843 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:36418070 original size:21 final size:23
Alignment explanation
Indices: 36418046--36418088 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
36418036 AAATCTATTC
*
36418046 AAAATTTTTAAAA-AT-TAAAAA
1 AAAACTTTTAAAATATATAAAAA
36418067 AAAACTTTTAAAATATATAAAA
1 AAAACTTTTAAAATATATAAAA
36418089 GTATCCCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 2 0.11
23 5 0.26
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAACTTTTAAAATATATAAAAA
Found at i:36427834 original size:6 final size:6
Alignment explanation
Indices: 36427825--36427858 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
36427815 TGGTTTTATT
* *
36427825 TTTTTA TTTTTA TTTTTA TTGTTA TCTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
36427859 CTCTCCTGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:36429129 original size:97 final size:97
Alignment explanation
Indices: 36429017--36429534 Score: 288
Period size: 97 Copynumber: 5.3 Consensus size: 97
36429007 TTTATATCGT
* * *
36429017 ATAAAATTAAATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
1 ATAAAAATAATTATATTATAAAATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
36429082 AGTAGTAAAAGTCATATATATATAATTAGTAA
66 AGTAGTAAAAGTCATATATATATAATTAGTAA
* ** * * * *
36429114 ATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACTAATTATATATAT-ATGACTTTT
1 ATAAAAATAATTATATTATAAAATATAA--A----TA-TTA--AAAAATACATATCAAGTCGTTT
* * * * * *
36429178 ACTACTATTAA-A-TA-CAAACGAC-T-TGATATGT-ATT--T-T
57 -GTA-T-TTAATAGTAGTAAAAGTCATAT-ATATATAATTAGTAA
* * * * *
36429214 TTAATATTTA-TATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
1 ATAAAAATAATTATATTATAAAATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
36429278 AGTAGTAAAAGTCATATATATATAATTAGTAA
66 AGTAGTAAAAGTCATATATATATAATTAGTAA
* ** * * * *
36429310 ATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACTAATTATATATAT-ATGACTTTT
1 ATAAAAATAATTATATTATAAAATATAA--A----TA-TTA--AAAAATACATATCAAGTCGTTT
* * * * * *
36429374 ACTACTATTAA-A-TA-CAAACGAC-T-TGATATGT-ATT--T-T
57 -GTA-T-TTAATAGTAGTAAAAGTCATAT-ATATATAATTAGTAA
* * * * *
36429410 TTAATATTTA-TATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
1 ATAAAAATAATTATATTATAAAATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
36429474 AGTAGTAAAAGTCATATATATATAATTAGTAA
66 AGTAGTAAAAGTCATATATATATAATTAGTAA
*
36429506 ATAAAAATAATTATATTTTAAAATATAAA
1 ATAAAAATAATTATATTATAAAATATAAA
36429535 AAGAATTGAC
Statistics
Matches: 297, Mismatches: 76, Indels: 96
0.63 0.16 0.20
Matches are distributed among these distances:
88 8 0.03
89 4 0.01
90 26 0.09
91 22 0.07
92 18 0.06
93 12 0.04
95 2 0.01
96 12 0.04
97 57 0.19
99 32 0.11
100 12 0.04
101 2 0.01
103 12 0.04
104 18 0.06
105 22 0.07
106 26 0.09
107 4 0.01
108 8 0.03
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.43
Consensus pattern (97 bp):
ATAAAAATAATTATATTATAAAATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAAT
AGTAGTAAAAGTCATATATATATAATTAGTAA
Found at i:36429135 original size:17 final size:17
Alignment explanation
Indices: 36429115--36429150 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
36429105 AATTAGTAAA
36429115 TAAAA-ATAATTATATTT
1 TAAAATATAATTAT-TTT
36429132 TAAAATATAATTATTTT
1 TAAAATATAATTATTTT
36429149 TA
1 TA
36429151 TTTACTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATATAATTATTTT
Found at i:36429331 original size:17 final size:17
Alignment explanation
Indices: 36429311--36429346 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
36429301 AATTAGTAAA
36429311 TAAAA-ATAATTATATTT
1 TAAAATATAATTAT-TTT
36429328 TAAAATATAATTATTTT
1 TAAAATATAATTATTTT
36429345 TA
1 TA
36429347 TTTACTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATATAATTATTTT
Found at i:36429361 original size:196 final size:196
Alignment explanation
Indices: 36429027--36429533 Score: 1014
Period size: 196 Copynumber: 2.6 Consensus size: 196
36429017 ATAAAATTAA
36429027 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
1 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
36429092 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACT
66 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACT
36429157 AATTATATATATATGACTTTTACTACTATTAAATACAAACGACTTGATATGTATTTTTTAATATT
131 AATTATATATATATGACTTTTACTACTATTAAATACAAACGACTTGATATGTATTTTTTAATATT
36429222 T
196 T
36429223 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
1 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
36429288 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACT
66 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACT
36429353 AATTATATATATATGACTTTTACTACTATTAAATACAAACGACTTGATATGTATTTTTTAATATT
131 AATTATATATATATGACTTTTACTACTATTAAATACAAACGACTTGATATGTATTTTTTAATATT
36429418 T
196 T
36429419 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
1 ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
36429484 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAA
66 GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAA
36429534 AAAGAATTGA
Statistics
Matches: 311, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 311 1.00
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (196 bp):
ATATATTATAATATATAAATATTAAAAAATACATATCAAGTCGTTTGTATTTAATAGTAGTAAAA
GTCATATATATATAATTAGTAAATAAAAATAATTATATTTTAAAATATAATTATTTTTATTTACT
AATTATATATATATGACTTTTACTACTATTAAATACAAACGACTTGATATGTATTTTTTAATATT
T
Found at i:36430518 original size:62 final size:63
Alignment explanation
Indices: 36430435--36430559 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 63
36430425 AATTAATTAA
36430435 AAAAATAAAATTAATTGAACATATAAAATACAAAAAGAATATCATATCATCTGTCACATGTCG
1 AAAAATAAAATTAATTGAACATATAAAATACAAAAAGAATATCATATCATCTGTCACATGTCG
36430498 AAAAATAAAA-TAATTGAACATATAAAATACAAAAAGAATATCATATCATCTGTCACATGTCG
1 AAAAATAAAATTAATTGAACATATAAAATACAAAAAGAATATCATATCATCTGTCACATGTCG
36430560 GCCATACATT
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 52 0.84
63 10 0.16
ACGTcount: A:0.53, C:0.13, G:0.08, T:0.26
Consensus pattern (63 bp):
AAAAATAAAATTAATTGAACATATAAAATACAAAAAGAATATCATATCATCTGTCACATGTCG
Found at i:36439200 original size:21 final size:21
Alignment explanation
Indices: 36439174--36439229 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
36439164 AACAGCGGTG
36439174 GCGGTGAGATTA-ATTACTGTA
1 GCGGTGAGATTAGA-TACTGTA
36439195 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
36439216 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
36439230 AACAGTGGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:36448531 original size:12 final size:12
Alignment explanation
Indices: 36448516--36448540 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36448506 CTAAGAAAAT
36448516 ATTTGTATTAGG
1 ATTTGTATTAGG
36448528 ATTTGTATTAGG
1 ATTTGTATTAGG
36448540 A
1 A
36448541 GTCAGATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (12 bp):
ATTTGTATTAGG
Found at i:36453849 original size:21 final size:21
Alignment explanation
Indices: 36453808--36453849 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
36453798 ATAATTTTGT
*
36453808 AATGCTAACTATTTCGATTAA
1 AATGCTAACTATTTAGATTAA
36453829 AATGCTAACATATTTAG-TTAA
1 AATGCTAAC-TATTTAGATTAA
36453850 TCATTTAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (21 bp):
AATGCTAACTATTTAGATTAA
Found at i:36456295 original size:16 final size:16
Alignment explanation
Indices: 36456265--36456301 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
36456255 TGACATTATA
36456265 CATTC-ATGCAAATAT
1 CATTCAATGCAAATAT
*
36456280 CATTCAATGTAAATAT
1 CATTCAATGCAAATAT
36456296 CATTCA
1 CATTCA
36456302 TACACATCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (16 bp):
CATTCAATGCAAATAT
Found at i:36456569 original size:89 final size:89
Alignment explanation
Indices: 36456466--36456868 Score: 444
Period size: 89 Copynumber: 4.5 Consensus size: 89
36456456 ATTAAAACCA
* * *
36456466 CAGATCTTGTCTTCCTGAGTTTGCTGCGAAGCAGATCGAATACACCAGCCTCGCATCCCTGATCT
1 CAGATCTTGTCTTCCTGAGTTTGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCCCTGATCT
*
36456531 TGCTGCAGAGCAGACTGAAGATAG
66 TGCAGCAGAGCAGACTGAAGATAG
* * * *
36456555 CAGATCTTGTCTTCCTGAGTTTGCAACAAAGCAGATCGAATACACCAACCTCGCCTCCCTGAGT-
1 CAGATCTTGTCTTCCTGAGTTTGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCCCTGA-TC
* *
36456619 TTACAGCGGAGCAGACTGAAGATAG
65 TTGCAGCAGAGCAGACTGAAGATAG
* * *
36456644 CAGATCTTGTCTTCCTGTA-TTAGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGC
1 CAGATCTTGTCTTCCTG-AGTTTGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCCCTGATC
36456708 TTGCAGCAGAGCAGACTGAAGATAG
65 TTGCAGCAGAGCAGACTGAAGATAG
* * * * * * *
36456733 CA-AACATTGCCTTCCT--GTACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTTCTTG-
1 CAGATC-TTGTCTTCCTGAGT-TTG-CAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCCCTGA
*
36456794 TAC-TGACAGCGGAGCAGACTGAAGATAG
63 T-CTTG-CAGCAGAGCAGACTGAAGATAG
* * * * *
36456822 CAGATCTTGCCTTCCTGTA-CTGGCAGTGAAACAGATCGAAGACACCA
1 CAGATCTTGTCTTCCTG-AGTTTGCAGCGAAGCAGATCGAAGACACCA
36456869 TAGTTTGCAG
Statistics
Matches: 266, Mismatches: 35, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
87 1 0.00
88 5 0.02
89 255 0.96
90 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (89 bp):
CAGATCTTGTCTTCCTGAGTTTGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCCCTGATCT
TGCAGCAGAGCAGACTGAAGATAG
Found at i:36456617 original size:44 final size:44
Alignment explanation
Indices: 36456479--36456620 Score: 126
Period size: 44 Copynumber: 3.2 Consensus size: 44
36456469 ATCTTGTCTT
* * *
36456479 CCTGAGTTTGCTGCGAAGCAGATCGAATACACCAGCCTCGCATC
1 CCTGAGTTTGCTGCAAAGCAGATCGAATACACCAACCTCGCCTC
* * * * * * * *
36456523 CCTGA-TCTTGCTGCAGAGCAGA-CTGAAGATAGCAGATCTTGTCTT
1 CCTGAGT-TTGCTGCAAAGCAGATC-GAATACACCA-ACCTCGCCTC
**
36456568 CCTGAGTTTGCAACAAAGCAGATCGAATACACCAACCTCGCCTC
1 CCTGAGTTTGCTGCAAAGCAGATCGAATACACCAACCTCGCCTC
36456612 CCTGAGTTT
1 CCTGAGTTT
36456621 ACAGCGGAGC
Statistics
Matches: 72, Mismatches: 21, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
43 2 0.03
44 40 0.56
45 28 0.39
46 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (44 bp):
CCTGAGTTTGCTGCAAAGCAGATCGAATACACCAACCTCGCCTC
Found at i:36456722 original size:44 final size:44
Alignment explanation
Indices: 36456495--36456722 Score: 110
Period size: 44 Copynumber: 5.1 Consensus size: 44
36456485 TTTGCTGCGA
* * * * *
36456495 AGCAGATCGAATACACCAGCCTCGCATCCCTGATCTTGCTGCAG
1 AGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCTTGCAGCAG
* * * * * * * *
36456539 AGCAGA-CTGAAGATAGCAGATCTTGTCT-TCCTGAGTTTGCAACAA
1 AGCAGATC-GAAGACACCAG-CCTCGCCTCT-CTGAGCTTGCAGCAG
* * * * * *
36456584 AGCAGATCGAATACACCAACCTCGCCTCCCTGAGTTTACAGCGG
1 AGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCTTGCAGCAG
* * * * *
36456628 AGCAGA-CTGAAGATAGCAGATCTTGTCT-TCCTGTA--TTAGCAGC-G
1 AGCAGATC-GAAGACACCAG-CCTCGCCTCT-CTG-AGCTT-GCAGCAG
36456672 AAGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCTTGCAGCAG
1 -AGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCTTGCAGCAG
36456717 AGCAGA
1 AGCAGA
36456723 CTGAAGATAG
Statistics
Matches: 129, Mismatches: 39, Indels: 32
0.64 0.19 0.16
Matches are distributed among these distances:
43 3 0.02
44 65 0.50
45 58 0.45
46 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (44 bp):
AGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCTTGCAGCAG
Found at i:36456767 original size:178 final size:177
Alignment explanation
Indices: 36456466--36456868 Score: 499
Period size: 178 Copynumber: 2.3 Consensus size: 177
36456456 ATTAAAACCA
* * * *
36456466 CAGATCTTGTCTTCCTG-AGTTTGCTGCGAAGCAGATCGAATACACCAGCCTCGCATCCCTGATC
1 CAGATCTTGTCTTCCTGTA-TTAGCAGCGAAGCAGATCGAAGACACCAGCCTCGCATCCCTGAGC
* * * * *
36456530 TTGCTGCAGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGAGTTTGCAACAAAGCAGATCGAA
65 TTGCAGCAGAGCAGACTGAAGATAGCAGAACTTGCCTTCCTGAG-CTGCAACAAAGCAGATCAAA
* * *
36456595 TACACCAACCTCGCCTCCCTG-AGTTTACAGCGGAGCAGACTGAAGATAG
129 GACACCAACCTCGCCTCCCTGTA-CTGACAGCGGAGCAGACTGAAGATAG
* *
36456644 CAGATCTTGTCTTCCTGTATTAGCAGCGAAGCAGATCGAAGACACCAGCCTCGCCTCTCTGAGCT
1 CAGATCTTGTCTTCCTGTATTAGCAGCGAAGCAGATCGAAGACACCAGCCTCGCATCCCTGAGCT
* *
36456709 TGCAGCAGAGCAGACTGAAGATAGCA-AACATTGCCTTCCTGTA-CTGACAGCGAAGCAGATCAA
66 TGCAGCAGAGCAGACTGAAGATAGCAGAAC-TTGCCTTCCTG-AGCTG-CAACAAAGCAGATCAA
* * * *
36456772 AGACACCAGCCTTGCCTTCTTGTACTGACAGCGGAGCAGACTGAAGATAG
128 AGACACCAACCTCGCCTCCCTGTACTGACAGCGGAGCAGACTGAAGATAG
* * * * *
36456822 CAGATCTTGCCTTCCTGTACTGGCAGTGAAACAGATCGAAGACACCA
1 CAGATCTTGTCTTCCTGTATTAGCAGCGAAGCAGATCGAAGACACCA
36456869 TAGTTTGCAG
Statistics
Matches: 195, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
177 4 0.02
178 188 0.96
179 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (177 bp):
CAGATCTTGTCTTCCTGTATTAGCAGCGAAGCAGATCGAAGACACCAGCCTCGCATCCCTGAGCT
TGCAGCAGAGCAGACTGAAGATAGCAGAACTTGCCTTCCTGAGCTGCAACAAAGCAGATCAAAGA
CACCAACCTCGCCTCCCTGTACTGACAGCGGAGCAGACTGAAGATAG
Found at i:36456788 original size:44 final size:45
Alignment explanation
Indices: 36456583--36456868 Score: 182
Period size: 45 Copynumber: 6.4 Consensus size: 45
36456573 GTTTGCAACA
* * * * *
36456583 AAGCAGATCGAATACACCA-ACCTCGCCTCCCTG-AGTTTACAGCG
1 AAGCAGATCGAAGACACCAGACCTTGCCTTCCTGTA-CTGACAGCG
* * * * * *
36456627 GAGCAGA-CTGAAGATAGCAGATCTTGTCTTCCTGTA-TTAGCAGCG
1 AAGCAGATC-GAAGACACCAGACCTTGCCTTCCTGTACTGA-CAGCG
*
36456672 AAGCAGATCGAAGACACCAG-CCTCGCC-TCTCTG-AGCTTG-CAGC-
1 AAGCAGATCGAAGACACCAGACCTTGCCTTC-CTGTA-C-TGACAGCG
* * * *
36456715 AGAGCAGA-CTGAAGATAGCAAACATTGCCTTCCTGTACTGACAGCG
1 A-AGCAGATC-GAAGACACCAGACCTTGCCTTCCTGTACTGACAGCG
* *
36456761 AAGCAGATCAAAGACACCAG-CCTTGCCTTCTTGTACTGACAGCG
1 AAGCAGATCGAAGACACCAGACCTTGCCTTCCTGTACTGACAGCG
* * * * * *
36456805 GAGCAGA-CTGAAGATAGCAGATCTTGCCTTCCTGTACTGGCAGTG
1 AAGCAGATC-GAAGACACCAGACCTTGCCTTCCTGTACTGACAGCG
*
36456850 AAACAGATCGAAGACACCA
1 AAGCAGATCGAAGACACCA
36456869 TAGTTTGCAG
Statistics
Matches: 184, Mismatches: 38, Indels: 39
0.70 0.15 0.15
Matches are distributed among these distances:
43 7 0.04
44 79 0.43
45 89 0.48
46 9 0.05
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (45 bp):
AAGCAGATCGAAGACACCAGACCTTGCCTTCCTGTACTGACAGCG
Found at i:36457101 original size:44 final size:43
Alignment explanation
Indices: 36457004--36457110 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
36456994 TTTTATCTCT
* * *
36457004 CTGAAGTTGCAGTAGAGCAGGTTGAAGTAGCAAACCTTACCCC
1 CTGAAGTTGCAGTGGAGCAAGTTGAAGTAGCAAACCTAACCCC
* * * *
36457047 CATGACGTTGCGGTGGGGCAAGTTGAAGATA-CAAATCCTAACTCC
1 C-TGAAGTTGCAGTGGAGCAAGTTGAAG-TAGCAAA-CCTAACCCC
36457092 CTGAAGTTGCAGTGGAGCA
1 CTGAAGTTGCAGTGGAGCA
36457111 GATTAAAACT
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.02
44 40 0.78
45 10 0.20
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.21
Consensus pattern (43 bp):
CTGAAGTTGCAGTGGAGCAAGTTGAAGTAGCAAACCTAACCCC
Found at i:36457689 original size:22 final size:22
Alignment explanation
Indices: 36457649--36457691 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36457639 AAACCCTAAG
* *
36457649 GCGCCGCATGCCAAGACCACCA
1 GCGCCGCACGCCAACACCACCA
*
36457671 GCGCCGCACGCCACCACCACC
1 GCGCCGCACGCCAACACCACC
36457692 GCTCACCTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.53, G:0.21, T:0.02
Consensus pattern (22 bp):
GCGCCGCACGCCAACACCACCA
Found at i:36461500 original size:83 final size:81
Alignment explanation
Indices: 36461342--36461500 Score: 219
Period size: 83 Copynumber: 1.9 Consensus size: 81
36461332 AACATCTTCT
*
36461342 GTTATAACACATAACAATGCCATATATATAGACACATAAGTATTTGCAATTCATCTTTGCTTAAC
1 GTTATAACACATAACAATGCCATATATATAGACACATAAGTATTTGCAATTCATCTTTGCTTAAA
* *
36461407 CTATCGTGCAACCTCC
66 CTACCATGCAACCTCC
* * * * * *
36461423 GTTATAACGCGTAACAATGCCATATATATATACACTGATAAGTATTTGTACTTCATTTTTGCTTA
1 GTTATAACACATAACAATGCCATATATATAGACAC--ATAAGTATTTGCAATTCATCTTTGCTTA
36461488 AACTACCATGCAA
64 AACTACCATGCAA
36461501 TCTTAGCATC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
81 32 0.48
83 35 0.52
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.34
Consensus pattern (81 bp):
GTTATAACACATAACAATGCCATATATATAGACACATAAGTATTTGCAATTCATCTTTGCTTAAA
CTACCATGCAACCTCC
Found at i:36462918 original size:29 final size:28
Alignment explanation
Indices: 36462875--36462946 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 28
36462865 GTTTTTTTTT
*
36462875 TGTCACCAAACTATGAAAAGTTACAAAA
1 TGTCACCCAACTATGAAAAGTTACAAAA
36462903 TAGTCACCCAACTATGAAAAGTTACAAAA
1 T-GTCACCCAACTATGAAAAGTTACAAAA
*
36462932 TGATTACCCAACTAT
1 TG-TCACCCAACTAT
36462947 TTAATTTTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 2 0.05
29 38 0.95
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.24
Consensus pattern (28 bp):
TGTCACCCAACTATGAAAAGTTACAAAA
Found at i:36465217 original size:15 final size:15
Alignment explanation
Indices: 36465199--36465228 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36465189 TCTAAGTTTG
*
36465199 TTTTGATTTTTTTAT
1 TTTTGAATTTTTTAT
36465214 TTTTGAATTTTTTAT
1 TTTTGAATTTTTTAT
36465229 AATTTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (15 bp):
TTTTGAATTTTTTAT
Found at i:36465234 original size:17 final size:17
Alignment explanation
Indices: 36465199--36465245 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
36465189 TCTAAGTTTG
*
36465199 TTTTG-ATTTTTT-TAT
1 TTTTGAATTTTTTATAA
36465214 TTTTGAATTTTTTATAA
1 TTTTGAATTTTTTATAA
* *
36465231 TTTTAAATTATTTAT
1 TTTTGAATTTTTTAT
36465246 TGAGACGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 5 0.19
16 7 0.26
17 15 0.56
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (17 bp):
TTTTGAATTTTTTATAA
Found at i:36473411 original size:2 final size:2
Alignment explanation
Indices: 36473404--36473435 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
36473394 TAATATAAGT
36473404 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36473436 AAGCTTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36476993 original size:2 final size:2
Alignment explanation
Indices: 36476988--36477024 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
36476978 GTCTTTTGTT
36476988 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36477025 CTTAGAGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:36488706 original size:31 final size:31
Alignment explanation
Indices: 36488668--36488727 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
36488658 CTATCTCAGC
36488668 ATCAACTCCAAGCAGCCTCACACCGATATGG
1 ATCAACTCCAAGCAGCCTCACACCGATATGG
36488699 ATCAACTCCAAGCAGCCTCACACCGATAT
1 ATCAACTCCAAGCAGCCTCACACCGATAT
36488728 AGCTAAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.37, G:0.13, T:0.17
Consensus pattern (31 bp):
ATCAACTCCAAGCAGCCTCACACCGATATGG
Found at i:36491734 original size:87 final size:90
Alignment explanation
Indices: 36491574--36491756 Score: 255
Period size: 94 Copynumber: 2.0 Consensus size: 90
36491564 GAGAAAAAAA
** *
36491574 CTATTTGAATTTTGATTTGTAAATTCATAACATTTAAAGTTGTTTCATGAACAAACAAAAAAAAC
1 CTATTTGAATTTTGATTCATAAAGTCATAACATTTAAAGTTGTTTCATG-A-AAAC-AAAAAAAC
36491639 TAAACTGTAGAAGAGAAGGAGAAGGAAAG
63 -AAACTGTAGAAGAGAAGGAGAAGGAAAG
* *
36491668 CTATTTGGATTTTGATTCATAAAGTCATAACATTTAAAGTTGTTTCATG-AATC-AAAAAA-AAA
1 CTATTTGAATTTTGATTCATAAAGTCATAACATTTAAAGTTGTTTCATGAAAACAAAAAAACAAA
*
36491730 CTGTAGAAGAGAAGGGGAAGGAAAG
66 CTGTAGAAGAGAAGGAGAAGGAAAG
36491755 CT
1 CT
36491757 TTCGGTGCAA
Statistics
Matches: 83, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
87 29 0.35
89 6 0.07
91 3 0.04
94 45 0.54
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.29
Consensus pattern (90 bp):
CTATTTGAATTTTGATTCATAAAGTCATAACATTTAAAGTTGTTTCATGAAAACAAAAAAACAAA
CTGTAGAAGAGAAGGAGAAGGAAAG
Found at i:36493204 original size:19 final size:21
Alignment explanation
Indices: 36493180--36493221 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 21
36493170 TTGAAATGTG
36493180 TTAAATTAA-AA-TAGATAAT
1 TTAAATTAACAACTAGATAAT
36493199 TTAAATTAATCAACTAGATAAT
1 TTAAATTAA-CAACTAGATAAT
36493221 T
1 T
36493222 GGAAATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
21 2 0.10
22 9 0.45
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
TTAAATTAACAACTAGATAAT
Found at i:36502055 original size:45 final size:45
Alignment explanation
Indices: 36502003--36502626 Score: 723
Period size: 45 Copynumber: 13.9 Consensus size: 45
36501993 AAAACAACAA
* * * * *
36502003 ATCTTGTC-TCCTTGTATTGGCAGCAAAATAGATCAAAAACAGCAG
1 ATCTTGTCTTCC-TATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * * * *
36502048 ATATTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAA-ACAACAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATC-AAAGATAGCAG
* * * **
36502093 ATCTTGTCTTCCTGTATTGACAGAGAAGTAGATCGAAA-ATAATAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATC-AAAGATAGCAG
* * * * *
36502138 ATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGTTAACAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* *
36502183 ATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * * * *
36502228 ATCTTGTTTTCCTATATTGGTAGCGAAGTAGATCAAAGGTAACAT
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
*
36502273 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * * *
36502318 ATATTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * * * * *
36502363 ATCTTGTCTTCTTGTATTGGCAGTGAAGTAGGTCAAAGATAACAT
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * *
36502408 ATCTTGTCTTCCTATACTAGCAGCAAAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * * * *
36502453 ATCTTGTCTTCCTATATTGGTAGCCAAGCAGATCGAAGATAACAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * *
36502498 ATCTTGTCTTCCTATATCGGCAGCGAAATAGATCAAAGATAGTAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
*
36502543 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAATATAGCAG
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
* * *
36502588 ATCTGGGCTTCCTATATTGGCAGCGAAGTAGATCGAAGA
1 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGA
36502627 CTGAAGTAAC
Statistics
Matches: 493, Mismatches: 83, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
44 2 0.00
45 485 0.98
46 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (45 bp):
ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCAAAGATAGCAG
Found at i:36502801 original size:44 final size:44
Alignment explanation
Indices: 36502729--36502838 Score: 148
Period size: 44 Copynumber: 2.5 Consensus size: 44
36502719 ATCCAGTCTC
* * ** * *
36502729 ATCTCCCCGAGGTTGCAGTAGAGCAGATTGAATAAGCCAATCTT
1 ATCTCCCTGAGGTTGCAGTGGAAAAGATTGAAGAAACCAATCTT
*
36502773 ATCTCTCTGAGGTTGCAGTGGAAAAGATTGAAGAAACCAATCTT
1 ATCTCCCTGAGGTTGCAGTGGAAAAGATTGAAGAAACCAATCTT
*
36502817 ATCTCCCTGAAGTTGCAGTGGA
1 ATCTCCCTGAGGTTGCAGTGGA
36502839 GTGGATCAGA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTCCCTGAGGTTGCAGTGGAAAAGATTGAAGAAACCAATCTT
Found at i:36503421 original size:22 final size:23
Alignment explanation
Indices: 36503393--36503437 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
36503383 ATGCAATCTT
36503393 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
36503415 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
36503438 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:36505244 original size:61 final size:58
Alignment explanation
Indices: 36505162--36505292 Score: 156
Period size: 61 Copynumber: 2.2 Consensus size: 58
36505152 TTTCAATAAG
* * * *
36505162 ATTATTATTAAATATATTTTAATAAAAATAATAAGAAATAATTTAATCATATT-TTAACATA
1 ATTATTATTAAATAAAATTTAAT-AAAATAAT---AAATAATTTAATAACATTCTTAACATA
* * *
36505223 ATTATTATTACATAAAATTTAATAAAATAATATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATAAAATTTAATAAAATAATAAATAATTTAATAACATTCTTAACATA
36505281 ATTATTATTAAA
1 ATTATTATTAAA
36505293 ATATGAATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 15 0.25
58 18 0.30
60 8 0.13
61 20 0.33
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAATAAAATTTAATAAAATAATAAATAATTTAATAACATTCTTAACATA
Done.