Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 109 of 210
Found at i:36831442 original size:31 final size:29
Alignment explanation
Indices: 36831390--36831447 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
36831380 AATTTGACTC
*
36831390 TTTTTTAAAAGATTGATAGTTAAATTTTT
1 TTTTTTAAAAGATTGAAAGTTAAATTTTT
*
36831419 TTTTTTTAAAGATTGAGAAAGTTAAATTT
1 TTTTTTAAAAGATT--GAAAGTTAAATTT
36831448 AACTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
31 12 0.48
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (29 bp):
TTTTTTAAAAGATTGAAAGTTAAATTTTT
Found at i:36837869 original size:14 final size:15
Alignment explanation
Indices: 36837849--36837890 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 15
36837839 ACTTAAAACA
36837849 ATATTTTAATTTTAT
1 ATATTTTAATTTTAT
36837864 -TATTTT-A-TTTAT
1 ATATTTTAATTTTAT
36837876 ATATTTTAAATTTTA
1 ATATTTT-AATTTTA
36837891 AGGATGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 5 0.22
13 7 0.30
14 6 0.26
15 1 0.04
16 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATTTTAATTTTAT
Found at i:36839357 original size:11 final size:11
Alignment explanation
Indices: 36839341--36839386 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
36839331 CCATTTTCTA
36839341 AATAAAATAAT
1 AATAAAATAAT
*
36839352 AAT-AAATATCT
1 AATAAAATA-AT
36839363 AAGTAAAATAAT
1 AA-TAAAATAAT
36839375 AATAAAATAAT
1 AATAAAATAAT
36839386 A
1 A
36839387 TTTAACTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 5 0.17
11 16 0.53
12 4 0.13
13 5 0.17
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:36839369 original size:23 final size:23
Alignment explanation
Indices: 36839337--36839380 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
36839327 TCTACCATTT
36839337 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
*
36839360 TCTAAGTAAAATAATAATAAA
1 TCTAAATAAAATAATAATAAA
36839381 ATAATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:36839762 original size:3 final size:3
Alignment explanation
Indices: 36839754--36839800 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
36839744 CTACTTCTTA
* *
36839754 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ACC AAC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
36839801 TATTATTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.36, C:0.34, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:36848588 original size:15 final size:15
Alignment explanation
Indices: 36848556--36848595 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
36848546 GGAAACCCTG
36848556 AAAATCAAATCTCTA
1 AAAATCAAATCTCTA
*
36848571 AAAAT-AAATCTTTA
1 AAAATCAAATCTCTA
36848585 AAAATCGAAAT
1 AAAATC-AAAT
36848596 TCAAAACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 13 0.59
15 5 0.23
16 4 0.18
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (15 bp):
AAAATCAAATCTCTA
Found at i:36857742 original size:29 final size:30
Alignment explanation
Indices: 36857708--36857767 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36857698 GCCCTCGACT
*
36857708 CTAAATTTTT-CAAAATTATAATTTTGCCC
1 CTAAATTTTTGCAAAATTACAATTTTGCCC
* *
36857737 CTAAATTTTTGCATAATTACATTTTTGCCC
1 CTAAATTTTTGCAAAATTACAATTTTGCCC
36857767 C
1 C
36857768 AATGCCCTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (30 bp):
CTAAATTTTTGCAAAATTACAATTTTGCCC
Found at i:36864750 original size:124 final size:123
Alignment explanation
Indices: 36864598--36865007 Score: 597
Period size: 124 Copynumber: 3.3 Consensus size: 123
36864588 ATTTATTAAG
* *
36864598 GAAATCGCTCCCACGTGGACGCGTTTTTGATACAATAGGTCCTGAGAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAATAGGTCCTGA-AAAATAATTTCGAGTTGAC
* * *
36864663 GTTACTGAGCAAATAATATAAAAACGATTCAAGCAGGATGCTTTATTAGAAGAATTTCT
65 GTTTCTGAGCAAATAATATAAAAACGCTTCAAGCAGGATGCTTTATTAGAAGAATTTTT
* * * * *
36864722 GAAATCGCTCCCACGTGAACGTGCTTTTGCTACAGTAGGTCCTAAAAAAATAATTTCGAGTTGAT
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAATAGGTCCT-GAAAAATAATTTCGAGTTGAC
* *
36864787 GTTTCTGAGCAAATAGCATA-AAAAATGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
65 GTTTCTGAGCAAATA--ATATAAAAACGCTTCAAGCAGGATGCTTTATTAGAAGAATTTTT
* * * *
36864847 GAAATTGCTCCCACGTGGATGCGCTTTTGCTACAGTAGGTCCTGAAAAATAATTTTGAGTTGACG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAATAGGTCCTGAAAAATAATTTCGAGTTGACG
* * *
36864912 TTTCTAAGCAAATAGTATAAAAACGCTTCAAGCAAGATGCTTTATTAGAAGAATTTTT
66 TTTCTGAGCAAATAATATAAAAACGCTTCAAGCAGGATGCTTTATTAGAAGAATTTTT
*
36864970 GAAATCGCTCACACGTGGACGCGCTTTTGCTACAATAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAATAG
36865008 CATGTTTGGG
Statistics
Matches: 254, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
122 2 0.01
123 71 0.28
124 102 0.40
125 76 0.30
126 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (123 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAATAGGTCCTGAAAAATAATTTCGAGTTGACG
TTTCTGAGCAAATAATATAAAAACGCTTCAAGCAGGATGCTTTATTAGAAGAATTTTT
Found at i:36872665 original size:124 final size:124
Alignment explanation
Indices: 36872524--36872773 Score: 491
Period size: 124 Copynumber: 2.0 Consensus size: 124
36872514 AAAATCATGA
36872524 AAACCTTATCGTAAAAAAATCTATGAGAAAATATATTAATTTTCTTATTCAACAGATTCATAATA
1 AAACCTTATCGTAAAAAAATCTATGAGAAAATATATTAATTTTCTTATTCAACAGATTCATAATA
36872589 ACTAATTAATTTAGTTCAATTTTCGAACTTAATTATTTAATTATAATTAATTAAATAAT
66 ACTAATTAATTTAGTTCAATTTTCGAACTTAATTATTTAATTATAATTAATTAAATAAT
*
36872648 AAACTTTATCGTAAAAAAATCTATGAGAAAATATATTAATTTTCTTATTCAACAGATTCATAATA
1 AAACCTTATCGTAAAAAAATCTATGAGAAAATATATTAATTTTCTTATTCAACAGATTCATAATA
36872713 ACTAATTAATTTAGTTCAATTTTCGAACTTAATTATTTAATTATAATTAATTAAATAAT
66 ACTAATTAATTTAGTTCAATTTTCGAACTTAATTATTTAATTATAATTAATTAAATAAT
36872772 AA
1 AA
36872774 TTCGAAAACC
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 125 1.00
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (124 bp):
AAACCTTATCGTAAAAAAATCTATGAGAAAATATATTAATTTTCTTATTCAACAGATTCATAATA
ACTAATTAATTTAGTTCAATTTTCGAACTTAATTATTTAATTATAATTAATTAAATAAT
Found at i:36888080 original size:13 final size:13
Alignment explanation
Indices: 36888062--36888090 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
36888052 TCATTCACAC
36888062 ATAATGCATTGTT
1 ATAATGCATTGTT
36888075 ATAATGCATTGTT
1 ATAATGCATTGTT
36888088 ATA
1 ATA
36888091 GGTGTTTCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (13 bp):
ATAATGCATTGTT
Found at i:36893307 original size:3 final size:3
Alignment explanation
Indices: 36893299--36893394 Score: 111
Period size: 3 Copynumber: 31.0 Consensus size: 3
36893289 GAACCTTAAA
* *
36893299 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT AAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
36893348 TCAAA AAT AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT
1 T--AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36893395 AAATTCAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
3 77 0.96
4 2 0.03
5 1 0.01
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:36893382 original size:51 final size:51
Alignment explanation
Indices: 36893306--36893408 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
36893296 AAATATTATT
36893306 ATTATTATTATTATTATTATTATTATTATTATCATTATAAATTCAAAAATA
1 ATTATTATTATTATTATTATTATTATTATTATCATTATAAATTCAAAAATA
36893357 ATTATTATTATTATTATTATTATTATTATTATCATTATAAATTCAAAAATA
1 ATTATTATTATTATTATTATTATTATTATTATCATTATAAATTCAAAAATA
36893408 A
1 A
36893409 ATAAAAGACG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (51 bp):
ATTATTATTATTATTATTATTATTATTATTATCATTATAAATTCAAAAATA
Found at i:36894924 original size:36 final size:36
Alignment explanation
Indices: 36894871--36895012 Score: 137
Period size: 36 Copynumber: 4.0 Consensus size: 36
36894861 CCAGAGAAGA
* *
36894871 AAGAGGAACCAAAGAAAGAAGGTGAAGCCAAAAAAG
1 AAGATGAACAAAAGAAAGAAGGTGAAGCCAAAAAAG
* * * *
36894907 AGGATGAACAAAAGAAAGAAGGTGAACCCAAGAAGG
1 AAGATGAACAAAAGAAAGAAGGTGAAGCCAAAAAAG
*
36894943 AAGATGAACAAAAGAAAG-A--TGAAGCCAAAAAGG
1 AAGATGAACAAAAGAAAGAAGGTGAAGCCAAAAAAG
* *** * * *
36894976 AAGAAGAAGGTAAGAAAGAAGATGAAACCAAGAAAG
1 AAGATGAACAAAAGAAAGAAGGTGAAGCCAAAAAAG
36895012 A
1 A
36895013 TGGTGAGAAG
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
33 26 0.30
34 1 0.01
35 1 0.01
36 59 0.68
ACGTcount: A:0.58, C:0.09, G:0.27, T:0.05
Consensus pattern (36 bp):
AAGATGAACAAAAGAAAGAAGGTGAAGCCAAAAAAG
Found at i:36894963 original size:15 final size:15
Alignment explanation
Indices: 36894909--36894965 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 15
36894899 CAAAAAAGAG
36894909 GATGAACAAAAGAAA
1 GATGAACAAAAGAAA
*
36894924 GAAGGTGAACCCAAGAAGGAA
1 G-A--TGAA--CAA-AAGAAA
36894945 GATGAACAAAAGAAA
1 GATGAACAAAAGAAA
36894960 GATGAA
1 GATGAA
36894966 GCCAAAAAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 12 0.35
16 4 0.12
18 8 0.24
20 4 0.12
21 6 0.18
ACGTcount: A:0.58, C:0.09, G:0.26, T:0.07
Consensus pattern (15 bp):
GATGAACAAAAGAAA
Found at i:36894974 original size:18 final size:19
Alignment explanation
Indices: 36894867--36895012 Score: 73
Period size: 18 Copynumber: 8.2 Consensus size: 19
36894857 AGAACCAGAG
*
36894867 AAGAAAGAGGAA-CCAAAGA
1 AAGAAAGATGAAGCC-AAGA
* *
36894886 AAG-AAGGTGAAGCCAAAA
1 AAGAAAGATGAAGCCAAGA
* *
36894904 AAG-AGGATGAA-CAAAAGA
1 AAGAAAGATGAAGC-CAAGA
* *
36894922 AAG-AAGGTGAACCCAAG-
1 AAGAAAGATGAAGCCAAGA
*
36894939 AAGGAAGATGAA--C-A-A
1 AAGAAAGATGAAGCCAAGA
36894954 AAGAAAGATGAAGCCAA-A
1 AAGAAAGATGAAGCCAAGA
* * **
36894972 AAGGAAGAAGAAGGTAAGA
1 AAGAAAGATGAAGCCAAGA
*
36894991 AAG-AAGATGAAACCAAGA
1 AAGAAAGATGAAGCCAAGA
36895009 AAGA
1 AAGA
36895013 TGGTGAGAAG
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
15 12 0.12
16 1 0.01
17 5 0.05
18 69 0.71
19 10 0.10
ACGTcount: A:0.59, C:0.09, G:0.27, T:0.05
Consensus pattern (19 bp):
AAGAAAGATGAAGCCAAGA
Found at i:36898590 original size:15 final size:15
Alignment explanation
Indices: 36898543--36898600 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
36898533 GCCCAAGTAT
* *
36898543 TAAAACTAAAATATA
1 TAAAAATAAAATAAA
*
36898558 TAAAAA-ATATATATAA
1 TAAAAATA-AAATA-AA
*
36898574 TAATAATAAAATAAA
1 TAAAAATAAAATAAA
36898589 TAAAAATAAAAT
1 TAAAAATAAAAT
36898601 GTCCAGTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
14 1 0.03
15 22 0.65
16 10 0.29
17 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAAAATAAAATAAA
Found at i:36898596 original size:18 final size:19
Alignment explanation
Indices: 36898557--36898599 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
36898547 ACTAAAATAT
*
36898557 ATAAAAAATATATATAATA
1 ATAAAAAATATATATAAAA
36898576 ATAATAAAATA-A-ATAAAA
1 ATAA-AAAATATATATAAAA
36898594 ATAAAA
1 ATAAAA
36898600 TGTCCAGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 2 0.09
18 9 0.41
19 5 0.23
20 6 0.27
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAAATATATATAAAA
Found at i:36907472 original size:27 final size:29
Alignment explanation
Indices: 36907442--36907514 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 29
36907432 AATCAAAATC
*
36907442 AAAATTAAAATCAAAAAG-AAAAAAGA-A
1 AAAATTAAAGTCAAAAAGCAAAAAAGAGA
*
36907469 AAAATCAAAGTC-AAAAGCAAAAAAGAGA
1 AAAATTAAAGTCAAAAAGCAAAAAAGAGA
36907497 AATCAATTAAAGTCAAAA
1 AA--AATTAAAGTCAAAA
36907515 TAAAAATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 5 0.13
27 18 0.47
28 3 0.08
30 9 0.24
31 3 0.08
ACGTcount: A:0.70, C:0.08, G:0.10, T:0.12
Consensus pattern (29 bp):
AAAATTAAAGTCAAAAAGCAAAAAAGAGA
Found at i:36908442 original size:7 final size:7
Alignment explanation
Indices: 36908430--36908470 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
36908420 AAAAAAAGGG
36908430 ATGAAAA
1 ATGAAAA
36908437 ATGAAAA
1 ATGAAAA
36908444 ATG-AAA
1 ATGAAAA
36908450 ATGAAAA
1 ATGAAAA
36908457 ATGAAAA
1 ATGAAAA
36908464 ATGAAAA
1 ATGAAAA
36908471 GTAATGACGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Found at i:36908450 original size:13 final size:14
Alignment explanation
Indices: 36908430--36908470 Score: 75
Period size: 13 Copynumber: 3.0 Consensus size: 14
36908420 AAAAAAAGGG
36908430 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
36908444 ATG-AAAATGAAAA
1 ATGAAAAATGAAAA
36908457 ATGAAAAATGAAAA
1 ATGAAAAATGAAAA
36908471 GTAATGACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
ATGAAAAATGAAAA
Found at i:36908453 original size:20 final size:20
Alignment explanation
Indices: 36908430--36908470 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36908420 AAAAAAAGGG
36908430 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
36908450 ATGAAAAATGAAAAATGAAA
1 ATGAAAAATGAAAAATGAAA
36908470 A
1 A
36908471 GTAATGACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
ATGAAAAATGAAAAATGAAA
Found at i:36909881 original size:44 final size:44
Alignment explanation
Indices: 36909701--36909885 Score: 142
Period size: 44 Copynumber: 4.2 Consensus size: 44
36909691 AATATTGTAG
36909701 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
* * * * * ** *
36909745 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAGGCCACCGA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAAATTAAAGACGGCAA
* * * * * ** * ** * *
36909789 GTCTTGTCTCCCTGAGCAGCAGCGGAGCAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
36909833 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
36909877 ATCTTATCT
1 ATCTTATCT
36909886 TTCCAAGATA
Statistics
Matches: 99, Mismatches: 36, Indels: 12
0.67 0.24 0.08
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 81 0.82
45 6 0.06
46 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAA
Found at i:36909933 original size:132 final size:131
Alignment explanation
Indices: 36909694--36910411 Score: 906
Period size: 131 Copynumber: 5.5 Consensus size: 131
36909684 ATCGGTGAAT
* * ** *
36909694 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAAATCTTATCTTTCCA
1 ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCA
* * * * * * * * **
36909759 AGATAGT-GGGAAGCAGATTTAGGCCACCGAGTCTTGTCTCCCTGAGCAGCAGCGGAGCAGGTT-
66 AG-GAGTAGGGAAACAGATTTAGGCCA-CAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTG
36909822 GAA
129 GAA
* * ** *
36909825 GATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTAAAGACGGCAAATCTTATCTTTCC
1 -ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCC
* * *
36909890 AAGATAGT-GGGAAGCAGATTTAGGCCACCGAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTT
65 AAG-GAGTAGGGAAACAGATTTAGGCCA-CAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTT
36909954 GGAA
128 GGAA
* * * * *
36909958 ATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATTGAAGACGGCGAATTTTAT-ATTCAC
1 ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTC-C
* *
36910022 TAGGAGTAGGGAAACAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGG
65 AAGGAGTAGGGAAACAGATTTAGGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGG
36910087 AA
130 AA
* * * * * *
36910089 ATTGCAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGGTCGAAGACAGTGAATCTTATCTTCCCC
1 ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCA
*
36910154 AGGAGTAGGGAAACAAATTT-GAGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGG
66 AGGAGTAGGGAAACAGATTTAG-GCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGG
36910218 AA
130 AA
* * * * *
36910220 ATTGCAGATCTTTTCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCT
1 ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCA
* * *
36910285 AGGAGTAGGGAAACAGATTTAAGCCACAAGTCATATGTCCCTGACCAGCAGTGAAATAGGTTGGA
66 AGGAGTAGGGAAACAGATTTAGGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGA
36910350 A
131 A
* * *
36910351 ATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGACGAATCTTATCTT
1 ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT
36910412 CAAGTGTAAG
Statistics
Matches: 530, Mismatches: 50, Indels: 13
0.89 0.08 0.02
Matches are distributed among these distances:
131 333 0.63
132 194 0.37
133 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (131 bp):
ATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCA
AGGAGTAGGGAAACAGATTTAGGCCACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGA
A
Found at i:36912452 original size:18 final size:17
Alignment explanation
Indices: 36912437--36912470 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36912427 ACATAATAAC
36912437 ATTTTTACATATAATACA
1 ATTTTT-CATATAATACA
36912455 ATTTTTCATAT-ATACA
1 ATTTTTCATATAATACA
36912471 TAAATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTTTCATATAATACA
Found at i:36912464 original size:17 final size:17
Alignment explanation
Indices: 36912424--36912470 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 17
36912414 CTATCAAATA
36912424 TTTACATA-ATA-ACATT
1 TTTACATATATACA-ATT
36912440 TTTACATATAATACAATT
1 TTTACATAT-ATACAATT
36912458 TTT-CATATATACA
1 TTTACATATATACA
36912471 TAAATTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 13 0.46
17 5 0.18
18 9 0.32
19 1 0.04
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTACATATATACAATT
Found at i:36912476 original size:19 final size:17
Alignment explanation
Indices: 36912429--36912466 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
36912419 AAATATTTAC
36912429 ATAATAACATTTTTACAT
1 ATAATAA-ATTTTTACAT
36912447 ATAATACAATTTTT-CAT
1 ATAATA-AATTTTTACAT
36912464 ATA
1 ATA
36912467 TACATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 12 0.63
19 1 0.05
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAATAAATTTTTACAT
Found at i:36916176 original size:2 final size:2
Alignment explanation
Indices: 36916169--36916237 Score: 122
Period size: 2 Copynumber: 35.0 Consensus size: 2
36916159 AGTTAATAAA
*
36916169 AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG A-
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
36916210 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
36916238 CAGGCAATGA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 63 0.98
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:36917491 original size:57 final size:57
Alignment explanation
Indices: 36917403--36917666 Score: 262
Period size: 57 Copynumber: 4.8 Consensus size: 57
36917393 TGGTAATGAA
** * *
36917403 GGTGTTGAAATTGCTGGCAGTAAAAGTGGTGAGGGTGTTGAAGGTTTAAATGAGAAG
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAG
* * *
36917460 GGTGTTGAGGTTGCTGGCAGTGAAGGTGGTGAAGGT-TT--AGG------TGGGGAG
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAG
* * **
36917508 GGTGTTGAGGTTGTTGGCAGTAAAGGTGGT-ACGAGTGTTGAAGGTGAAAAT-GGAGAG
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGA-GGGTGTTGAAGGTTTAAATGGGA-AG
* * ** *
36917565 TGTGCTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAGGTGGGGAG
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAG
* * *
36917622 GGTGTTGAGGTTGCTGGCAATGAAGGTGGTGAGGGTGGTGAAGGT
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGT
36917667 GGTAAGGGTG
Statistics
Matches: 168, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
47 1 0.01
48 35 0.21
49 2 0.01
51 3 0.02
54 3 0.02
56 4 0.02
57 117 0.70
58 3 0.02
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (57 bp):
GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAAATGGGAAG
Found at i:36917512 original size:48 final size:48
Alignment explanation
Indices: 36917431--36917653 Score: 151
Period size: 48 Copynumber: 4.3 Consensus size: 48
36917421 AGTAAAAGTG
* * ** * *
36917431 GTGAGGGTGTTGAAGGTTTAAATGAGAAGGGTGTTGAGGTTGCTGGCA
1 GTGAAGGTGGTGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGCTGGCA
*
36917479 GTGAAGGTGGTGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGTTGGCA
1 GTGAAGGTGGTGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGCTGGCA
* * * *
36917527 GTAAAGGTGGT-ACGAGTGTTGAAGGTGAAAATGGAGAGTGTGCTGAGGTTGCTGGCA
1 GTGAAGGTGGTGA--AG-GTT-TAGGTG-----GG-GAGGGTGTTGAGGTTGCTGGCA
*
36917584 GTAAAGGTGGTGAGGGTGTTGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGCTGGCA
1 GTGAA---GGT----G-G-TGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGCTGGCA
*
36917641 ATGAAGGTGGTGA
1 GTGAAGGTGGTGA
36917654 GGGTGGTGAA
Statistics
Matches: 138, Mismatches: 17, Indels: 40
0.71 0.09 0.21
Matches are distributed among these distances:
47 1 0.01
48 54 0.39
49 3 0.02
50 4 0.03
51 5 0.04
54 3 0.02
56 2 0.01
57 47 0.34
58 2 0.01
60 3 0.02
63 5 0.04
64 4 0.03
65 3 0.02
66 1 0.01
67 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (48 bp):
GTGAAGGTGGTGAAGGTTTAGGTGGGGAGGGTGTTGAGGTTGCTGGCA
Found at i:36917585 original size:105 final size:109
Alignment explanation
Indices: 36917403--36917667 Score: 299
Period size: 105 Copynumber: 2.4 Consensus size: 109
36917393 TGGTAATGAA
** * * ** *
36917403 GGTGTTGAAATTGCTGGCAGTAAAAGTGGTGAGGGTGTTGAAGGTTTAAATGAGAAGGGTGTTGA
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGAGTGTTGAAGGTGAAAATGAGAAGGGTGCTGA
*
36917468 GGTTGCTGGCAGTGAA-GGT-G-G-TGAAGGTTTAGGTGGGGAG
66 GGTTGCTGGCAGTAAAGGGTGGTGTTGAAGGTTTAGGTGGGGAG
* *
36917508 GGTGTTGAGGTTGTTGGCAGTAAAGGTGGT-ACGAGTGTTGAAGGTGAAAATG-GAGAGTGTGCT
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGA-GAGTGTTGAAGGTGAAAATGAGA-AGGGTGCT
36917571 GAGGTTGCTGGCAGTAAAGGTGGTGAGGGTGTTGAAGGTTTAGGTGGGGAG
64 GAGGTTGCTGGCAGTAAA-G-GGT---GGTGTTGAAGGTTTAGGTGGGGAG
* * * *
36917622 GGTGTTGAGGTTGCTGGCAATGAAGGTGGTGAGGGTGGTGAAGGTG
1 GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGAGTGTTGAAGGTG
36917668 GTAAGGGTGT
Statistics
Matches: 133, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
104 3 0.02
105 66 0.50
108 3 0.02
112 1 0.01
113 1 0.01
114 58 0.44
115 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (109 bp):
GGTGTTGAGGTTGCTGGCAGTAAAGGTGGTGAGAGTGTTGAAGGTGAAAATGAGAAGGGTGCTGA
GGTTGCTGGCAGTAAAGGGTGGTGTTGAAGGTTTAGGTGGGGAG
Found at i:36917615 original size:24 final size:23
Alignment explanation
Indices: 36917588--36917633 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
36917578 CTGGCAGTAA
*
36917588 AGGTGGTGAGGGTGTTGAAGGTTT
1 AGGTGGGGAGGGTGTTG-AGGTTT
36917612 AGGTGGGGAGGGTGTTGAGGTT
1 AGGTGGGGAGGGTGTTGAGGTT
36917634 GCTGGCAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.30
Consensus pattern (23 bp):
AGGTGGGGAGGGTGTTGAGGTTT
Found at i:36917665 original size:18 final size:18
Alignment explanation
Indices: 36917642--36917684 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
36917632 TTGCTGGCAA
*
36917642 TGAAGGTGGTGAGGGTGG
1 TGAAGGTGGTAAGGGTGG
*
36917660 TGAAGGTGGTAAGGGTGT
1 TGAAGGTGGTAAGGGTGG
36917678 TGAAGGT
1 TGAAGGT
36917685 TTAGATGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.53, T:0.26
Consensus pattern (18 bp):
TGAAGGTGGTAAGGGTGG
Found at i:36920605 original size:29 final size:30
Alignment explanation
Indices: 36920573--36920632 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
36920563 AAGATATATA
*
36920573 TAAATATTATATGTATA-TAATTAT-TTATT
1 TAAATAGTA-ATGTATATTAATTATATTATT
* *
36920602 TAAATGGTAATTTATATTAATTATATTATT
1 TAAATAGTAATGTATATTAATTATATTATT
36920632 T
1 T
36920633 TATTATGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.23
29 14 0.54
30 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (30 bp):
TAAATAGTAATGTATATTAATTATATTATT
Found at i:36920761 original size:4 final size:4
Alignment explanation
Indices: 36920752--36920829 Score: 95
Period size: 4 Copynumber: 19.0 Consensus size: 4
36920742 AGTAAAAGAT
* * *
36920752 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATT- ATATC ATGA GATAA ATTTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT-TA ATTA -ATTA A-TTA
36920802 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
36920830 TATCTTGAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
3 2 0.03
4 56 0.85
5 8 0.12
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (4 bp):
ATTA
Found at i:36920804 original size:46 final size:46
Alignment explanation
Indices: 36920753--36920840 Score: 167
Period size: 46 Copynumber: 1.9 Consensus size: 46
36920743 GTAAAAGATA
36920753 TTAATTAATTAATTAATTAATTAATTAATTATATCATGAGATAAAT
1 TTAATTAATTAATTAATTAATTAATTAATTATATCATGAGATAAAT
*
36920799 TTAATTAATTAATTAATTAATTAATTAATTATATCTTGAGAT
1 TTAATTAATTAATTAATTAATTAATTAATTATATCATGAGAT
36920841 TTTTATTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (46 bp):
TTAATTAATTAATTAATTAATTAATTAATTATATCATGAGATAAAT
Found at i:36925333 original size:4 final size:4
Alignment explanation
Indices: 36925324--36925353 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
36925314 GTATCCATTT
36925324 TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
36925354 GACTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:36925451 original size:5 final size:5
Alignment explanation
Indices: 36925441--36925468 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
36925431 ATACATAGAC
36925441 TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
36925469 ACTCTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:36927919 original size:31 final size:31
Alignment explanation
Indices: 36927884--36927944 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
36927874 TATATATAGG
* *
36927884 TTAAATT-ATAATTTTGGTCCTTTTACAATAT
1 TTAAATTCA-AATTTTAGTCCTTATACAATAT
36927915 TTAAATTCAAATTTTAGTCCTTATACAATA
1 TTAAATTCAAATTTTAGTCCTTATACAATA
36927945 ATTTGGTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (31 bp):
TTAAATTCAAATTTTAGTCCTTATACAATAT
Found at i:36933030 original size:13 final size:13
Alignment explanation
Indices: 36933012--36933037 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36933002 CTTTGCTCGA
36933012 CTTTGAACATATT
1 CTTTGAACATATT
36933025 CTTTGAACATATT
1 CTTTGAACATATT
36933038 TGAGATCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
CTTTGAACATATT
Found at i:36934881 original size:11 final size:11
Alignment explanation
Indices: 36934867--36934891 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36934857 AATCATTCTT
36934867 AAAAAAAATTA
1 AAAAAAAATTA
36934878 AAAAAAAATTA
1 AAAAAAAATTA
36934889 AAA
1 AAA
36934892 TTCTAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAAATTA
Found at i:36935373 original size:21 final size:19
Alignment explanation
Indices: 36935322--36935403 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 19
36935312 ATATATTCCT
36935322 TTTTTTTTTGAAAGATTTCTTA
1 TTTTTTTTT-AAA-ATTT-TTA
*
36935344 TATTTTTTTAACAATTTTTA
1 TTTTTTTTTAA-AATTTTTA
*
36935364 TTTTTATTTTCAAAATTTTAA
1 TTTTT-TTTT-AAAATTTTTA
*
36935385 GGTTTTTTTTAAAATTTTT
1 -TTTTTTTTTAAAATTTTT
36935404 TTAAGAATGA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 15 0.29
21 21 0.41
22 15 0.29
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTTTTTTAAAATTTTTA
Found at i:36943113 original size:24 final size:25
Alignment explanation
Indices: 36943086--36943134 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
36943076 TAAATTTTAT
*
36943086 AAATAATTAATATTTA-ATTGCTTA
1 AAATAATTAAAATTTATATTGCTTA
* *
36943110 AAATATTTAAAATTTATATTTCTTA
1 AAATAATTAAAATTTATATTGCTTA
36943135 TATTAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (25 bp):
AAATAATTAAAATTTATATTGCTTA
Found at i:36945019 original size:79 final size:80
Alignment explanation
Indices: 36944913--36945072 Score: 313
Period size: 79 Copynumber: 2.0 Consensus size: 80
36944903 TAAAAAAATT
36944913 ACTTAAAAATACTATATAAAATATTAAAAACCAATGAACTAAATATTAAAATGGAAAATTGTTAA
1 ACTTAAAAATACTATATAAAATATTAAAAACCAATGAACTAAATATTAAAATGGAAAATTGTTAA
36944978 TTAAGTGCTTATAAG
66 TTAAGTGCTTATAAG
36944993 ACTTAAAAATA-TATATAAAATATTAAAAACCAATGAACTAAATATTAAAATGGAAAATTGTTAA
1 ACTTAAAAATACTATATAAAATATTAAAAACCAATGAACTAAATATTAAAATGGAAAATTGTTAA
36945057 TTAAGTGCTTATAAG
66 TTAAGTGCTTATAAG
36945072 A
1 A
36945073 TTATTAAATT
Statistics
Matches: 80, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 69 0.86
80 11 0.14
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (80 bp):
ACTTAAAAATACTATATAAAATATTAAAAACCAATGAACTAAATATTAAAATGGAAAATTGTTAA
TTAAGTGCTTATAAG
Found at i:36945920 original size:11 final size:11
Alignment explanation
Indices: 36945906--36945945 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
36945896 TGTTTTCTCC
*
36945906 CTATTTTGCTA
1 CTATTTTACTA
36945917 CTATTTTACTA
1 CTATTTTACTA
* *
36945928 TTATGTTACTA
1 CTATTTTACTA
36945939 CTATTTT
1 CTATTTT
36945946 GTTGTTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.05, T:0.57
Consensus pattern (11 bp):
CTATTTTACTA
Found at i:36950397 original size:21 final size:22
Alignment explanation
Indices: 36950359--36950406 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
36950349 AAAGCAAAAT
36950359 GAAAATAAAATTAAAAATATA-
1 GAAAATAAAATTAAAAATATAG
* ** *
36950380 GAAAATTAAATTTTAAATGTAG
1 GAAAATAAAATTAAAAATATAG
36950402 GAAAA
1 GAAAA
36950407 ATTTAAGGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.27
Consensus pattern (22 bp):
GAAAATAAAATTAAAAATATAG
Found at i:36958676 original size:124 final size:124
Alignment explanation
Indices: 36958455--36958831 Score: 594
Period size: 124 Copynumber: 3.0 Consensus size: 124
36958445 TTAGGGTTTT
* ** *
36958455 TAGGTCTTGGAAGAAAT-AATTTCGAGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAG
1 TAGGTCATGGAAGAAATAAATTT--TTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAG
* * *
36958519 CAGGATGCTATTTGAGAAGAATTTGTGAAATCGCACCCTCATGGACGTGCTTTTGCTACAG
64 CAGGATGCTATTTGAGAAGAATTTGTAAAATCGCACCCTCGTGGACGCGCTTTTGCTACAG
*
36958580 TAGGTCATGGAAGAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGTTTCTAGCA
1 TAGGTCATGGAAGAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* *
36958645 GGATGTTATTTGAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTAAAATCGCACCCTCGTGGACGCGCTTTTGCTACAG
* *
36958704 TCGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
* *
36958769 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCTCCCTCGTAGACGCGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGT-AAAATCGCACCCTCGTGGACGCGCTTTTGCTACAG
36958829 TAG
1 TAG
36958832 CATGTTTGGG
Statistics
Matches: 233, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
124 177 0.76
125 51 0.22
126 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (124 bp):
TAGGTCATGGAAGAAATAAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTAAAATCGCACCCTCGTGGACGCGCTTTTGCTACAG
Found at i:36959924 original size:19 final size:19
Alignment explanation
Indices: 36959900--36959938 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36959890 TAGTTTTATT
36959900 GGTGCTTTGAAACAACATA
1 GGTGCTTTGAAACAACATA
*
36959919 GGTGCTTTGAAATAACATA
1 GGTGCTTTGAAACAACATA
36959938 G
1 G
36959939 CATCAAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (19 bp):
GGTGCTTTGAAACAACATA
Found at i:36962230 original size:28 final size:24
Alignment explanation
Indices: 36962103--36962267 Score: 147
Period size: 23 Copynumber: 7.2 Consensus size: 24
36962093 AGTAAAATTA
*
36962103 TTAATTTAGTTTAGG-GTTTTTAA-
1 TTAA-TTAGGTTAGGAGTTTTTAAG
36962126 TTAAATTAGGTTAGG-GTTTTTAAG
1 TT-AATTAGGTTAGGAGTTTTTAAG
* *
36962150 TTTA-GAGGGTTAGG-GTTTTTAAG
1 TTAATTA-GGTTAGGAGTTTTTAAG
* *
36962173 -T--TTAGGGTTTATGA-TTTTTAAT
1 TTAATTA-GG-TTAGGAGTTTTTAAG
*
36962195 TTAATTAGGTTAGG-GTTTTTAAT
1 TTAATTAGGTTAGGAGTTTTTAAG
36962218 TTAATTAGGTTA-GAGTTTTTAAG
1 TTAATTAGGTTAGGAGTTTTTAAG
36962241 TTAATTAGGTTAGG-GTTTTTAAG
1 TTAATTAGGTTAGGAGTTTTTAAG
36962264 TTAA
1 TTAA
36962268 GGGNNNNNNN
Statistics
Matches: 122, Mismatches: 8, Indels: 24
0.79 0.05 0.16
Matches are distributed among these distances:
21 4 0.03
22 14 0.11
23 94 0.77
24 7 0.06
25 3 0.02
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (24 bp):
TTAATTAGGTTAGGAGTTTTTAAG
Found at i:36962258 original size:91 final size:92
Alignment explanation
Indices: 36962103--36962270 Score: 259
Period size: 91 Copynumber: 1.8 Consensus size: 92
36962093 AGTAAAATTA
* * *
36962103 TTAATTTAGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAAGTTTAGAGGGTTAGGGTTT
1 TTAATTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTAAGAGGGTTAGGGTTT
*
36962168 TTAAGTTTAGGGTTTATGATTTTTAAT
66 TTAAGTTAAGGGTTTATGATTTTTAAT
* *
36962195 TTAA-TTAGGTTAGGGTTTTTAATTTAATTAGGTTAGAGTTTTTAAGTTAATTA-GGTTAGGGTT
1 TTAATTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTAA-GAGGGTTAGGGTT
36962258 TTTAAGTTAAGGG
65 TTTAAGTTAAGGG
36962271 NNNNNNNNNN
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
91 64 0.93
92 5 0.07
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.49
Consensus pattern (92 bp):
TTAATTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTTTTAAGTTAAGAGGGTTAGGGTTT
TTAAGTTAAGGGTTTATGATTTTTAAT
Found at i:36962358 original size:23 final size:23
Alignment explanation
Indices: 36962326--36962752 Score: 418
Period size: 23 Copynumber: 18.8 Consensus size: 23
36962316 NNNNNNNNNT
*
36962326 GTTAGAGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962349 GTTAAGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962372 GTTAGGGTTTTTAAGTTT-A--GG
1 GTTAGGGTTTTTAA-TTTAATTAG
*
36962393 GTTTAGGG-TTTTAATTAAATTAG
1 G-TTAGGGTTTTTAATTTAATTAG
36962416 GTTAGGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962439 TTTAGGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962462 GTTAGGGTTTTTAAGTTT-A--GG
1 GTTAGGGTTTTTAA-TTTAATTAG
*
36962483 GTTCAGGGTTTTAAATTTAATTAG
1 GTT-AGGGTTTTTAATTTAATTAG
* *
36962507 GTTATGATTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962530 GTTAGGGTTTTTAAGTTT-A--GG
1 GTTAGGGTTTTTAA-TTTAATTAG
* *
36962551 GTTTACGGTTTTTAATTAAATTAG
1 G-TTAGGGTTTTTAATTTAATTAG
* *
36962575 ATTAGGGTTTTTAAGTTT-A--GG
1 GTTAGGGTTTTTAA-TTTAATTAG
* * *
36962596 GTTTAGGATTTTTAATTAAATTAA
1 G-TTAGGGTTTTTAATTTAATTAG
36962620 GTTAGGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962643 GTTAGGGTTTTTAAGTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAG
* ***
36962666 GTTAGGGTTTTTAAGTTAAGGGG
1 GTTAGGGTTTTTAATTTAATTAG
*
36962689 GTTAGGGTTTTTAAGTTT-A--GG
1 GTTAGGGTTTTTAA-TTTAATTAG
* * *
36962710 GTTTAAGGTTTTTAAGTAAATTAG
1 G-TTAGGGTTTTTAATTTAATTAG
36962734 GTTAGGGTTTTTAATTTAA
1 GTTAGGGTTTTTAATTTAA
36962753 AGGTATTAAT
Statistics
Matches: 333, Mismatches: 45, Indels: 52
0.77 0.10 0.12
Matches are distributed among these distances:
20 2 0.01
21 27 0.08
22 62 0.19
23 221 0.66
24 21 0.06
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.49
Consensus pattern (23 bp):
GTTAGGGTTTTTAATTTAATTAG
Found at i:36962443 original size:45 final size:45
Alignment explanation
Indices: 36962326--36962752 Score: 324
Period size: 45 Copynumber: 9.4 Consensus size: 45
36962316 NNNNNNNNNT
* * * *
36962326 GTTAGAGTTTTTAATTTAATTAGGTTAAGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTA-GTTTAGGGTTTTAATTAAATTAG
**
36962372 GTTAGGGTTTTTAAGTTT-A-GGGTTTAGGGTTTTAATTAAATTAG
1 GTTAGGGTTTTTAA-TTTAATTAGTTTAGGGTTTTAATTAAATTAG
*
36962416 GTTAGGGTTTTTAATTTAATTAGTTTAGGGTTTTTAATTTAATTAG
1 GTTAGGGTTTTTAATTTAATTAGTTTAGGG-TTTTAATTAAATTAG
** * *
36962462 GTTAGGGTTTTTAAGTTT-A-GGGTTCAGGGTTTTAAATTTAATTAG
1 GTTAGGGTTTTTAA-TTTAATTAGTTTAGGGTTTT-AATTAAATTAG
* * * *
36962507 GTTATGATTTTTAATTTAATTAGGTTAGGG-TTT--TTAAGTTTAGG
1 GTTAGGGTTTTTAATTTAATTAGTTTAGGGTTTTAATTAA-ATTA-G
* * * *
36962551 GTTTACGGTTTTTAATTAAATTAGATTAGGG-TTT--TTAAGTTTAGG
1 G-TTAGGGTTTTTAATTTAATTAGTTTAGGGTTTTAATTAA-ATTA-G
* * *
36962596 GTTTAGGATTTTTAATTAAATTAAG-TTAGGGTTTTTAATTTAATTAG
1 G-TTAGGGTTTTTAATTTAATT-AGTTTAGGG-TTTTAATTAAATTAG
* * ***
36962643 GTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT-AAGGGG
1 GTTAGGGTTTTTAATTTAATTAGTTTAGGG-TTTTAA-TTAAATTAG
** * *
36962689 GTTAGGGTTTTTAAGTTT-A-GGGTTTAAGGTTTTTAAGTAAATTAG
1 GTTAGGGTTTTTAA-TTTAATTAGTTT-AGGGTTTTAATTAAATTAG
36962734 GTTAGGGTTTTTAATTTAA
1 GTTAGGGTTTTTAATTTAA
36962753 AGGTATTAAT
Statistics
Matches: 316, Mismatches: 43, Indels: 45
0.78 0.11 0.11
Matches are distributed among these distances:
42 3 0.01
43 6 0.02
44 48 0.15
45 136 0.43
46 102 0.32
47 15 0.05
48 3 0.01
49 3 0.01
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.49
Consensus pattern (45 bp):
GTTAGGGTTTTTAATTTAATTAGTTTAGGGTTTTAATTAAATTAG
Found at i:36962473 original size:113 final size:109
Alignment explanation
Indices: 36962327--36962752 Score: 419
Period size: 113 Copynumber: 3.7 Consensus size: 109
36962317 NNNNNNNNTG
* * * *
36962327 TTAGAGTTTTTAATTTAATTAGGTTAAGGTTTTTAA-TTTAATTAGGTTAGGGTTTTTAAGTTTA
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GGGTTAGGGTTTTTAAATTTA
*
36962391 GGGTTTAGGGTTTTAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGT
63 -GG-TTAGGGTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGT
36962440 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTTCAGGG-TTTTAAATTTAAT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTT-AGGGTTTTTAAA--T--T
** **
36962504 TAGGTTATGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A-GGGT
61 TAGGTTA-GGGTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAATTAGT
* * * * *
36962553 TTACGGTTTTTAATTAAATTAGATTAGGGTTTTTAAGTTTAGGGTTTAGGATTTTTAATTAAATT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-TTAGGGTTTTT-A--AATTT
* * *
36962618 AAGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGG
62 AGGTTAGGG-TTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGT
* *** * *
36962667 TTAGGGTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAGTTTAGGGTTTAAGGTTTTTAAGTAAATT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-TTAGGGTTTTT-A--AATTT
36962732 AGGTTAGGGTTTTTAATTTAA
62 AGGTTAGGG-TTTTAATTTAA
36962753 AGGTATTAAT
Statistics
Matches: 265, Mismatches: 32, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
111 10 0.04
112 7 0.03
113 122 0.46
114 117 0.44
115 7 0.03
117 2 0.01
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (109 bp):
TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTTAGGGTTAGGGTTTTTAAATTTAGGT
TAGGGTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGT
Found at i:36962504 original size:68 final size:67
Alignment explanation
Indices: 36962348--36962751 Score: 393
Period size: 68 Copynumber: 6.0 Consensus size: 67
36962338 AATTTAATTA
* *
36962348 GGTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT-A--GGGTTTAGGGTTTTAATTA
1 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGG-TTT--TTA
*
36962410 A-ATTA-
61 AGTTTAG
*
36962415 GGTTAGGGTTTTTAATTTAATTAGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT
1 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT
36962480 AG
66 AG
* * *
36962482 GGTTCAGGGTTTTAAATTTAATTAGGTTATGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTT
1 GGTT-AGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTT
36962547 TAG
65 TAG
* * * * * *
36962550 GGTTTACGGTTTTTAATTAAATTAGATTAGGGTTTTTAAGTTT-A--GGGTTTAGGATTTTTAAT
1 GG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAG
36962612 TAAATTA-
63 T---TTAG
* * *
36962619 AGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTA
1 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT
36962684 AGGG
66 A--G
* * * *
36962688 GGTTAGGGTTTTTAAGTTT-A--GGGTTTAAGGTTTTTAAGTAAATTAGGTTAGGGTTTTTAA-T
1 GGTTAGGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGT
36962749 TTA
64 TTA
36962752 AAGGTATTAA
Statistics
Matches: 286, Mismatches: 31, Indels: 40
0.80 0.09 0.11
Matches are distributed among these distances:
65 4 0.01
66 10 0.03
67 64 0.22
68 164 0.57
69 36 0.13
70 8 0.03
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.49
Consensus pattern (67 bp):
GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTT
AG
Found at i:36962825 original size:25 final size:25
Alignment explanation
Indices: 36962795--36962842 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
36962785 TATCAAAAAT
36962795 TTCTATTTTATTAAATCAAATAAAC
1 TTCTATTTTATTAAATCAAATAAAC
*
36962820 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTAAATCAAATAA
36962843 TATCAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTAAATCAAATAAAC
Found at i:36963794 original size:7 final size:7
Alignment explanation
Indices: 36963784--36963808 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36963774 TTATATACAT
36963784 AATACTA
1 AATACTA
36963791 AATACTA
1 AATACTA
36963798 AATACTA
1 AATACTA
36963805 AATA
1 AATA
36963809 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:36964016 original size:20 final size:20
Alignment explanation
Indices: 36963979--36964016 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36963969 TTTATTTTTA
*
36963979 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
36963999 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
36964017 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:36971001 original size:3 final size:3
Alignment explanation
Indices: 36970993--36971020 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
36970983 GATTTAGTCC
36970993 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
36971021 GCTTTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:36975195 original size:6 final size:6
Alignment explanation
Indices: 36975186--36975242 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
36975176 AAGAAAAAGA
* * * * *
36975186 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATG AAAA-- AAATTA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
36975232 AAAATC AAAAT
1 AAAATC AAAAT
36975243 AATAAAAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
4 3 0.07
6 40 0.93
ACGTcount: A:0.68, C:0.09, G:0.05, T:0.18
Consensus pattern (6 bp):
AAAATC
Found at i:36975241 original size:16 final size:15
Alignment explanation
Indices: 36975210--36975257 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
36975200 AATCAAAGTC
* *
36975210 AAAATGAAAATGAAA
1 AAAATAAAAATCAAA
36975225 AAAATTAAAAATCAAA
1 AAAA-TAAAAATCAAA
* *
36975241 ATAATAAAAAACAAA
1 AAAATAAAAATCAAA
36975256 AA
1 AA
36975258 GAAGAAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (15 bp):
AAAATAAAAATCAAA
Found at i:36976250 original size:7 final size:7
Alignment explanation
Indices: 36976238--36976296 Score: 95
Period size: 7 Copynumber: 8.7 Consensus size: 7
36976228 TAAATTAAAT
36976238 AAATGAA
1 AAATGAA
36976245 AAATGAA
1 AAATGAA
36976252 AAATG-A
1 AAATGAA
36976258 AAATGAA
1 AAATGAA
36976265 AAATGAA
1 AAATGAA
36976272 AAATGAA
1 AAATGAA
36976279 AAATG-A
1 AAATGAA
*
36976285 AACTGAA
1 AAATGAA
36976292 AAATG
1 AAATG
36976297 GAGAGGCTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 11 0.23
7 37 0.77
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (7 bp):
AAATGAA
Found at i:36976263 original size:20 final size:21
Alignment explanation
Indices: 36976238--36976296 Score: 95
Period size: 20 Copynumber: 2.9 Consensus size: 21
36976228 TAAATTAAAT
36976238 AAATGAAAAATGAAAAATG-A
1 AAATGAAAAATGAAAAATGAA
36976258 AAATGAAAAATGAAAAATGAA
1 AAATGAAAAATGAAAAATGAA
*
36976279 AAATG-AAACTGAAAAATG
1 AAATGAAAAATGAAAAATG
36976297 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (21 bp):
AAATGAAAAATGAAAAATGAA
Found at i:36976268 original size:27 final size:27
Alignment explanation
Indices: 36976238--36976296 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
36976228 TAAATTAAAT
36976238 AAATGAAAAATGAAAAATGAAAATGAA
1 AAATGAAAAATGAAAAATGAAAATGAA
*
36976265 AAATGAAAAATGAAAAATGAAACTGAA
1 AAATGAAAAATGAAAAATGAAAATGAA
36976292 AAATG
1 AAATG
36976297 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (27 bp):
AAATGAAAAATGAAAAATGAAAATGAA
Found at i:36977675 original size:87 final size:87
Alignment explanation
Indices: 36977511--36977687 Score: 264
Period size: 87 Copynumber: 2.0 Consensus size: 87
36977501 CAGATAAGTA
* * * *
36977511 AAGATAGCAGATCTGGCCTTCCTGCATTGACAACGAAGCAGATTGAAAACAAAGCCTTGTCTCTA
1 AAGATAGCAGATCTGGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* *
36977576 TCGGTTATAGTGGAGCTGATTG
66 TCGGTTACAGTGGAGCAGATTG
* *
36977598 AAGATAGCAGATCTTGCCTTCCTGCATTAACAACGGAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTGGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* *
36977663 TTGGTTGCAGTGGAGCAGATTG
66 TCGGTTACAGTGGAGCAGATTG
36977685 AAG
1 AAG
36977688 CCAGAGATCT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (87 bp):
AAGATAGCAGATCTGGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
TCGGTTACAGTGGAGCAGATTG
Found at i:36978074 original size:44 final size:44
Alignment explanation
Indices: 36977877--36978853 Score: 336
Period size: 44 Copynumber: 22.7 Consensus size: 44
36977867 NNNNNNNNNN
* * **
36977877 GTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATGA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT-A
* * * * * * *
36977921 ATGATCTTATCTCGCTGA-AGTTACAGTAGAGTAGATCGCA-CCA
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTA
* * * ** * *
36977964 G--GTCTTATTTCCCTGAGATTGCAGTGGAACAGACTGAAG-AA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* * * *
36978005 TTTCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA
1 -GT-A-ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* * **
36978052 GTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATGA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT-A
* * * * * * *
36978096 ATGATCTTATCTCGCTGA-AGTTACAGTAGAGTAGATCGCA-CCA
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTA
* ** * * * *
36978139 G--GTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAG-TC
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
** **
36978180 GATAATCTTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 G-TAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCT-A
* * * * * * * *
36978225 ATGATCTCATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-A
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTA
* * ** **
36978268 G--ATCTTATCTCCTTGAGGTTACAGTGGAGTAGACCGAA-AAA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* * *
36978309 TTTCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTG-A---A
1 -GT-A-ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* *
36978352 G---TCTTATCTCCCTGAGATTACAGCGTAGTAGATTGAAGCTA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* * **
36978393 GTAATCCTATCTCTCTGA-AGTTACAGTGGAGTAGATT-AAAATAA
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCT-A
* * * * * * * *
36978437 ATGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGTATC-A
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
*
36978480 G--GTC--ATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* *** **
36978520 GTAATCCTATCTCCCTGAGATTACAGTGGAACGGATT-AAAATAA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT-A
* * * * * * * * *
36978564 ATGATCTTATCTCTC-AAAAGTTACAGTAGAGTAGATCGTATC-A
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTA
* * * *
36978607 G--GTCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* ** **
36978649 GTAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAAA
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCT--A
* * * ** * * *
36978694 G-GATCTCATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATC-A
1 GTAATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTA
* * *** *
36978736 G--GTCTTATCTCCCTGAGATTACAGTGGAGCAGACCAAAG-AA
1 GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* * *
36978777 TTTCAGATCTTATCTCCCTGAGATTATAATGGAGTAGATTGAAGCTA
1 -GT-A-ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
* *
36978824 GTAATCCTATCTCCCTCAGATTACAGTGGA
1 GTAATCTTATCTCCCTGAGATTACAGTGGA
36978854 ACGGATTAAA
Statistics
Matches: 674, Mismatches: 195, Indels: 128
0.68 0.20 0.13
Matches are distributed among these distances:
37 30 0.04
38 1 0.00
39 28 0.04
40 2 0.00
41 138 0.20
42 11 0.02
43 27 0.04
44 327 0.49
45 11 0.02
46 97 0.14
47 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
GTAATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTA
Found at i:36978161 original size:85 final size:85
Alignment explanation
Indices: 36977884--36978923 Score: 349
Period size: 85 Copynumber: 12.1 Consensus size: 85
36977874 NNNGTAATCC
** *
36977884 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAATGATCTTATCTCGCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGTA
36977949 GAGTAGATCGCACCAGGTCT
66 GAGTAGATCGCACCAGGTCT
* * * * ** *
36977969 TATTTCCCTGAGATTGCAGTGGAACAGACTGAAGAATTTCA-GGTCTTATCTCCCTG-AGATTAC
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TGAATGATCTTATCTCCCTGAAG-TTAC
** * * * * * *
36978032 AGCGGAGCAGATTGAAGCTAGTAATCC
62 AGTAGAGTAGATCGCA-CCAG--GTCT
** *
36978059 TATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAATGATCTTATCTCGCTGAAGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGTA
36978124 GAGTAGATCGCACCAGGTCT
66 GAGTAGATCGCACCAGGTCT
** * * *
36978144 TATCTCCCTGAGATTACAACGGAGCAAATTAAAGTCG-ATAATCTTATCTCCCTGAAGTTACAGT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-GAATGATCTTATCTCCCTGAAGTTACAGT
* ** *** ** *
36978208 GGAGCGGATTAAAATAAATGATCT
65 AGAGTAGA-TCGCA-CCA-GGTCT
* * * * *** * * *
36978232 CATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCAT-CA-GATCTTATCTCCTTGAGGTTACAGT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGT
* * * * *
36978293 GGAGTAGACCGAAAAATTTCAGATCT
65 AGAGTAGATCG---CA--CCAGGTCT
*
36978319 TATCTCCCTGAGGTTACAGTGGAGCAGA-T----TGAA-G-TCTTATCTCCCTG-AGATTACAG-
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAG-TTACAGT
* * * * * *
36978375 CGTAGTAGATTGAAGCTAGTAATCC
65 AG-AGTAGATCGCA-CCAG--GTCT
* * * * *
36978400 TATCTCTCTGA-AGTTACAGTGGAGTAGATTAAAATAAATGATCTTATCTCTCTGAGGTTACAGT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGT
* *
36978464 AGAGTAGATCGTATCAGGTC-
65 AGAGTAGATCGCACCAGGTCT
* ** * * *
36978484 -ATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT-AGTAATCCTATCTCCCTG-AGATTACAG
1 TATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATGAATGATCTTATCTCCCTGAAG-TTACAG
* *** *** ** *
36978546 TGGAACGGATTAAAATAAATGATCT
64 TAGAGTAGA-TCGCA-CCA-GGTCT
* * * * * *** * *
36978571 TATCTCTC-AAAAGTTACAGTAGAGTAGA-TCGTAT-CA-GGTCTTATCTCCCTG-AGATTACAG
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAG-TTACAG
** * * * * * * *
36978631 CGGAGCAAATTGAAGCTAGTAATCC
64 TAGAGTAGATCGCA-CCAG--GTCT
* * * * * *
36978656 TATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGC
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGT
*
36978720 AGAGTAGATCGCATCAGGTCT
65 AGAGTAGATCGCACCAGGTCT
**
36978741 TATCTCCCTGAGATTACAGTGGAGCAGA-CCAAA-GAATTTCAGATCTTATCTCCCTG-AGATTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAA--T--GATCTTATCTCCCTGAAG-TTA
* * * * * * * *
36978803 TAATGGAGTAGATTGAAGCTAGTAATCC
61 CAGTAGAGTAGATCGCA-CCAG--GTCT
* * * * * * *
36978831 TATCTCCCTCAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGTA
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGTA
*** *
36978896 GAGTAGATCGTTTCAGATCT
66 GAGTAGATCGCACCAGGTCT
36978916 TATCTCCC
1 TATCTCCC
36978924 AAAGTGGAGC
Statistics
Matches: 694, Mismatches: 198, Indels: 126
0.68 0.19 0.12
Matches are distributed among these distances:
79 2 0.00
80 2 0.00
81 27 0.04
82 4 0.01
83 80 0.12
84 15 0.02
85 203 0.29
86 23 0.03
87 107 0.15
88 164 0.24
89 10 0.01
90 52 0.07
91 3 0.00
92 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (85 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATGAATGATCTTATCTCCCTGAAGTTACAGTA
GAGTAGATCGCACCAGGTCT
Found at i:36978186 original size:129 final size:129
Alignment explanation
Indices: 36978008--36978290 Score: 417
Period size: 129 Copynumber: 2.2 Consensus size: 129
36977998 TGAAGAATTT
* * * *
36978008 CAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTG-AGA
1 CAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGCGAGTAATCCTATCTCCCTGAAG-
* * *
36978072 TTACAGTGGAGTGGATTAAAATGAATGATCTTATCTCGCTGAAGTTACAGTAGAGTAGATCGCAC
65 TTACAGTGGAGCGGATTAAAATAAATGATCTCATCTCGCTGAAGTTACAGTAGAGTAGATCGCAC
*
36978137 CAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGTCGA-TAATCTTATCTCCCTGAAG
1 CAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAG-CGAGTAATCCTATCTCCCTGAAG
* *
36978201 TTACAGTGGAGCGGATTAAAATAAATGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
65 TTACAGTGGAGCGGATTAAAATAAATGATCTCATCTCGCTGAAGTTACAGTAGAGTAGATCGCAC
* * *
36978266 CAGATCTTATCTCCTTGAGGTTACA
1 CAGGTCTTATCTCCCTGAGATTACA
36978291 GTGGAGTAGA
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
129 135 0.97
130 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
CAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGCGAGTAATCCTATCTCCCTGAAGT
TACAGTGGAGCGGATTAAAATAAATGATCTCATCTCGCTGAAGTTACAGTAGAGTAGATCGCAC
Found at i:36978366 original size:37 final size:37
Alignment explanation
Indices: 36978316--36978389 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
36978306 AAATTTCAGA
* *
36978316 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* *
36978353 TCTTATCTCCCTGAGATTACAGCGTAGTAGATTGAAG
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
36978390 CTAGTAATCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (37 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
Found at i:36978370 original size:212 final size:213
Alignment explanation
Indices: 36978060--36978510 Score: 574
Period size: 212 Copynumber: 2.1 Consensus size: 213
36978050 TAGTAATCCT
* ** ** *
36978060 ATCTCCCTGAGATTACAGTGGAGTGGA--TTAAAA-TGAATGATCTTATCTCGCTGAAGTTACAG
1 ATCTCCCTGAGATTACAGTGGAGTAGACCGAAAAATTTCA-GATCTTATCTCCCTGAAGTTACAG
*
36978122 TAGAGTAGATCGCACCAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGTCGA-TAAT
65 TAGAGCAGATCGCA-CAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAG-CGAGTAAT
* *
36978186 CTTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAATGATCTCATCTCTCTGAAGTTACAG
128 CCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAATGATCTCATCTCTCTGAAGTTACAG
36978251 TAGAGTAGATCGCATCAGATC
193 TAGAGTAGATCGCATCAGATC
* * *
36978272 TTATCTCCTTGAGGTTACAGTGGAGTAGACCGAAAAATTTCAGATCTTATCTCCCTGAGGTTACA
1 --ATCTCCCTGAGATTACAGTGGAGTAGACCGAAAAATTTCAGATCTTATCTCCCTGAAGTTACA
* * * * * * * *
36978337 GTGGAGCAGATTG-A-A-GTCTTATCTCCCTGAGATTACAGCGTAGTAGATTGAAGCTAGTAATC
64 GTAGAGCAGATCGCACAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGCGAGTAATC
* * * *
36978399 CTATCTCTCTGAAGTTACAGTGGAGTAGATTAAAATAAATGATCTTATCTCTCTGAGGTTACAGT
129 CTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAATGATCTCATCTCTCTGAAGTTACAGT
* *
36978464 AGAGTAGATCGTATCAGGTC
194 AGAGTAGATCGCATCAGATC
36978484 ATCTCCCTGAGATTACAGTGGAGTAGA
1 ATCTCCCTGAGATTACAGTGGAGTAGA
36978511 TTGAAGCTAG
Statistics
Matches: 205, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
210 25 0.12
211 2 0.01
212 115 0.56
213 1 0.00
214 24 0.12
215 1 0.00
216 35 0.17
217 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (213 bp):
ATCTCCCTGAGATTACAGTGGAGTAGACCGAAAAATTTCAGATCTTATCTCCCTGAAGTTACAGT
AGAGCAGATCGCACAGGTCTTATCTCCCTGAGATTACAACGGAGCAAATTAAAGCGAGTAATCCT
ATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAATGATCTCATCTCTCTGAAGTTACAGTAG
AGTAGATCGCATCAGATC
Found at i:36978676 original size:129 final size:129
Alignment explanation
Indices: 36978314--36978768 Score: 654
Period size: 129 Copynumber: 3.6 Consensus size: 129
36978304 AAAAATTTCA
* * * * *
36978314 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTG-A--A-GTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
* * * **
36978375 CGTAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTTACAGTGGAGTAGATTAAAATAAAT
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAT
*
36978439 GATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGTATCAGGTC--ATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
* * *
36978502 TGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTG-AGATTACAGTGGAACGGATTAAAATAAAT
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAG-TTACAGTGGAGCGGATTAAAATAAAT
**
36978566 GATCTTATCTCTCAAAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
* *
36978631 CGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAT
* * *
36978695 GATCTCATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
*
36978760 TGGAGCAGA
66 CGGAGCAGA
36978769 CCAAAGAATT
Statistics
Matches: 297, Mismatches: 25, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
125 32 0.11
126 3 0.01
127 115 0.39
128 1 0.00
129 144 0.48
130 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (129 bp):
GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAT
Found at i:36978820 original size:175 final size:175
Alignment explanation
Indices: 36978604--36978923 Score: 498
Period size: 175 Copynumber: 1.8 Consensus size: 175
36978594 GTAGATCGTA
* *
36978604 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAAG
1 TCAGATCTTATCTCCCTGAGATTACAACGGAGCAAATTGAAGCTAGTAATCCTATCTCCCT-AAG
*
36978669 -TTACAGTGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
65 ATTACAGTGGAACGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
*
36978733 TCAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATT
130 TCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATT
* * * * *
36978779 TCAGATCTTATCTCCCTGAGATTATAATGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTCAGA
1 TCAGATCTTATCTCCCTGAGATTACAACGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTAAGA
* * * **
36978844 TTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGTTT
66 TTACAGTGGAACGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
36978909 CAGATCTTATCTCCC
131 CAGATCTTATCTCCC
36978924 AAAGTGGAGC
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
174 2 0.02
175 128 0.98
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAACGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTAAGA
TTACAGTGGAACGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
CAGATCTTATCTCCCTGAGATTACAGTGGAGCAGACCAAAGAATT
Found at i:36979840 original size:21 final size:21
Alignment explanation
Indices: 36979797--36979838 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
36979787 TATTTCATTC
36979797 TATTTTTCATTAATCTATTTT
1 TATTTTTCATTAATCTATTTT
* *
36979818 TATTTTT-ATTTATTTATTTT
1 TATTTTTCATTAATCTATTTT
36979838 T
1 T
36979839 TACTTCTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (21 bp):
TATTTTTCATTAATCTATTTT
Found at i:36979875 original size:14 final size:14
Alignment explanation
Indices: 36979856--36979890 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36979846 GTTTGTTCTA
*
36979856 ATATATATGTGTAT
1 ATATATATATGTAT
36979870 ATATATATATGTAT
1 ATATATATATGTAT
*
36979884 GTATATA
1 ATATATA
36979891 CGCATAGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (14 bp):
ATATATATATGTAT
Found at i:36991877 original size:17 final size:18
Alignment explanation
Indices: 36991857--36991900 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
36991847 AATTGTTTTT
36991857 AAAATATAAAAAATTCAAA
1 AAAATATAAAAAATT-AAA
* *
36991876 AAAGTATAAAATATT-AA
1 AAAATATAAAAAATTAAA
36991893 AAAATATA
1 AAAATATA
36991901 TTTTTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
19 13 0.59
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AAAATATAAAAAATTAAA
Found at i:36991885 original size:19 final size:17
Alignment explanation
Indices: 36991857--36991900 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
36991847 AATTGTTTTT
36991857 AAAATATAAAAAATTCAA
1 AAAATATAAAAAATT-AA
*
36991875 AAAAGTATAAAATATTAA
1 AAAA-TATAAAAAATTAA
36991893 AAAATATA
1 AAAATATA
36991901 TTTTTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 10 0.42
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAATATAAAAAATTAA
Found at i:36993918 original size:25 final size:25
Alignment explanation
Indices: 36993874--36993939 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
36993864 TTCATGATAC
* *
36993874 ATATCATCTTTT--ATTGTTTCTTCA
1 ATATCATCTTTTACATT-TTCCGTCA
36993898 TATATCATCTTTTACATTTTCCGTCA
1 -ATATCATCTTTTACATTTTCCGTCA
*
36993924 AT-TCATCCTTTACATT
1 ATATCATCTTTTACATT
36993940 CGTAGTGCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 13 0.36
25 14 0.39
26 6 0.17
27 3 0.08
ACGTcount: A:0.23, C:0.21, G:0.03, T:0.53
Consensus pattern (25 bp):
ATATCATCTTTTACATTTTCCGTCA
Found at i:36993990 original size:33 final size:32
Alignment explanation
Indices: 36993945--36994105 Score: 124
Period size: 33 Copynumber: 4.8 Consensus size: 32
36993935 ACATTCGTAG
* *
36993945 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAGAA
* *
36993978 TGCCATAGCCCAGCTATGGTCTTACATATAAACA
1 TGCCATAGCCCAGCTATGGTCTTACAT-CAGA-A
** * * * * * * *
36994012 CTATCATGGTCCAACCATGGTCTTACGTTCATAG
1 -TGCCATAGCCCAGCTATGGTCTTAC-ATCAGAA
* **
36994046 TGCCATAACCCAATTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAGAA
36994079 TGCCATAGCCCAGCTATGGTCTTACAT
1 TGCCATAGCCCAGCTATGGTCTTACAT
36994106 ATAAACACTA
Statistics
Matches: 96, Mismatches: 27, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
32 6 0.06
33 66 0.69
34 2 0.02
35 21 0.22
36 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (32 bp):
TGCCATAGCCCAGCTATGGTCTTACATCAGAA
Found at i:36994117 original size:101 final size:101
Alignment explanation
Indices: 36993933--36994236 Score: 511
Period size: 101 Copynumber: 3.0 Consensus size: 101
36993923 AATTCATCCT
* * *
36993933 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
36993998 CTTACATATAAACACTATCATGGTCCAACCATGGTC
66 CTTACATATAAACACTATCATGGTCCAACCATGGTC
36994034 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
36994099 CTTACATATAAACACTATCATGGTCCAACCATGGTC
66 CTTACATATAAACACTATCATGGTCCAACCATGGTC
* * *
36994135 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTTTCATTAAAATGCCATA-CCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
* * **
36994199 CTTACATTTAAACATTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACACTATCATGGTCCAACCATGGTC
36994235 TT
1 TT
36994237 CTCCGTCAAT
Statistics
Matches: 193, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
100 46 0.24
101 147 0.76
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
CTTACATATAAACACTATCATGGTCCAACCATGGTC
Found at i:36997911 original size:12 final size:12
Alignment explanation
Indices: 36997894--36997926 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
36997884 TGAAGTTCGA
36997894 ATATGTATATAT
1 ATATGTATATAT
*
36997906 ATATGTATATCT
1 ATATGTATATAT
36997918 AT-TGTATAT
1 ATATGTATAT
36997927 TTGATGAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 7 0.35
12 13 0.65
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (12 bp):
ATATGTATATAT
Found at i:36998029 original size:114 final size:113
Alignment explanation
Indices: 36997785--36997996 Score: 363
Period size: 114 Copynumber: 1.8 Consensus size: 113
36997775 NNNNNNNNNN
36997785 TATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATT
1 TATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATT
*
36997850 AGTTAAGTATGAATGTTATATATATACACATAAATGAAGTTCGAATATG
66 AGTTAAGTATGAATATTATATATATACACATAAATGAAGTTCGAATA-G
36997899 TATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATT
1 TATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATT
*
36997964 AGTTAAGTATTGAA-ATTAGTTATATATGCACAT
66 AGTTAAGTA-TGAATATTA--TATATATACACAT
36997997 GTGTGAGGTT
Statistics
Matches: 93, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
114 77 0.83
115 4 0.04
116 12 0.13
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.42
Consensus pattern (113 bp):
TATATATATATGTATATCTATTGTATATTTGATGAGCTATAATTAAAAGTATATGAATTGAAATT
AGTTAAGTATGAATATTATATATATACACATAAATGAAGTTCGAATAG
Found at i:36998388 original size:41 final size:41
Alignment explanation
Indices: 36998334--36998483 Score: 219
Period size: 41 Copynumber: 3.7 Consensus size: 41
36998324 TTTCGGACTT
*
36998334 TAAGTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
* *
36998375 TAAGCCTAGCAGGCTAAGTGCCGGTTATCTGAATCCGGTTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
* * * *
36998416 TAAACCTAGCAGGCTAAGTGTCGGTGATCTGAATTAGGCTA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
* *
36998457 TAAGCTTAGCAGGCTAAATGCCGGTGA
1 TAAGCCTAGCAGGCTAAGTGCCGGTGA
36998484 ATATGTTAAA
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 96 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (41 bp):
TAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTA
Found at i:37002298 original size:25 final size:25
Alignment explanation
Indices: 37002264--37002315 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
37002254 TGTAATTAGA
*
37002264 AACCCTTTCTCTAGTTGACCTTTTT
1 AACCCTTTCTCTAGTGGACCTTTTT
37002289 AACCCTTTCTCTAGTGGACCTTTTT
1 AACCCTTTCTCTAGTGGACCTTTTT
37002314 AA
1 AA
37002316 TGACATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.27, G:0.10, T:0.44
Consensus pattern (25 bp):
AACCCTTTCTCTAGTGGACCTTTTT
Found at i:37007420 original size:18 final size:18
Alignment explanation
Indices: 37007394--37007436 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
37007384 ACAAATTTGT
*
37007394 TATTTGAGTTATTCGAAC
1 TATTCGAGTTATTCGAAC
* *
37007412 TATTCGAGTTATTTGAGC
1 TATTCGAGTTATTCGAAC
37007430 TATTCGA
1 TATTCGA
37007437 ATTGTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.44
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAC
Found at i:37008092 original size:2 final size:2
Alignment explanation
Indices: 37008085--37008110 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37008075 CATCCTATCA
37008085 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
37008111 GCATAGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37013040 original size:14 final size:13
Alignment explanation
Indices: 37013010--37013044 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
37013000 TTTTTAATTC
37013010 AATAATAATAAAAA
1 AATAA-AATAAAAA
37013024 AATAAAATAAAATA
1 AATAAAATAAAA-A
37013038 AATAAAA
1 AATAAAA
37013045 AATTAGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAATAAAAA
Found at i:37013941 original size:17 final size:17
Alignment explanation
Indices: 37013919--37013954 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
37013909 TTCTGTGATG
* *
37013919 TTTTCATGTTTGTTTTT
1 TTTTCATATTCGTTTTT
37013936 TTTTCATATTCGTTTTT
1 TTTTCATATTCGTTTTT
37013953 TT
1 TT
37013955 AATGATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75
Consensus pattern (17 bp):
TTTTCATATTCGTTTTT
Found at i:37056079 original size:44 final size:44
Alignment explanation
Indices: 37056029--37056148 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 44
37056019 ATCGCAGCAG
*
37056029 GTCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAGAAAACAA
1 GTCTTATCTCCTTGAAGTTGCAGAGGAGCAGACTGAGAAAACAA
* ** * *
37056073 GTCTTATCCCCTTGAAGTCACAGTAGG-GCAGACTGAGGAAGCAA
1 GTCTTATCTCCTTGAAGTTGCAG-AGGAGCAGACTGAGAAAACAA
* ** * *
37056117 ATCTTATCTCCCAGAGGTTGCAGTGGAGCAGA
1 GTCTTATCTCCTTGAAGTTGCAGAGGAGCAGA
37056149 TTGAAGTCGA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
43 2 0.03
44 56 0.93
45 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (44 bp):
GTCTTATCTCCTTGAAGTTGCAGAGGAGCAGACTGAGAAAACAA
Found at i:37056213 original size:44 final size:45
Alignment explanation
Indices: 37056117--37056234 Score: 116
Period size: 44 Copynumber: 2.7 Consensus size: 45
37056107 GAGGAAGCAA
* *
37056117 ATCTTATCTCCCAGAGGTTGCAGTGGAGCAGATTGAAGTCGATAG
1 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAG
* * * * *
37056162 -TCCTATCTCCCTGAGGTTGTAGTGGAGCGGGTT-AACGT-AATGG
1 ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAA-GTCAATAG
* * *
37056205 ATCTTATCTCTCTGAAGTTGCAGTAGAGCA
1 ATCTTATCTCCCTGAGGTTGCAGTGGAGCA
37056235 AATCGCATCA
Statistics
Matches: 58, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
43 5 0.09
44 53 0.91
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAG
Found at i:37057866 original size:9 final size:9
Alignment explanation
Indices: 37057836--37057860 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37057826 TTTATTATCC
37057836 TTATTATTG
1 TTATTATTG
37057845 TTATTATTG
1 TTATTATTG
37057854 TTATTAT
1 TTATTAT
37057861 GATTATCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:37060336 original size:12 final size:12
Alignment explanation
Indices: 37060304--37060338 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37060294 ATAATTAGTG
37060304 ATAAAAATAATA
1 ATAAAAATAATA
**
37060316 ATAGCAATAATA
1 ATAAAAATAATA
37060328 ATAAAAATAAT
1 ATAAAAATAAT
37060339 TAAACTGTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:37061890 original size:50 final size:50
Alignment explanation
Indices: 37061806--37062231 Score: 364
Period size: 50 Copynumber: 8.5 Consensus size: 50
37061796 TTTAGAAAGT
*
37061806 AAGATTCGCCATTGTGGCTTTAATCATTTT-AACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATC-TTTTGAACTGCAATGTCGGGGAAGC
* *
37061856 ACGATTCGCTGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* * * ** * * * *
37061906 ATGATTCACCGATGTGGCTTTAATCTGCT-ACACTGC-ATCGCCTGGGAGGT
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGA-ACTGCAAT-GTCGGGGAAGC
** * * *
37061956 AAGATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGCCGGGGAAAC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* * * ** * * *
37062006 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGC-ATCGCCTGGGGGA-T
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAAT-GTC-GGGGAAGC
* *
37062056 AAGATTCGCTGTTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* ** * ** * *
37062106 AAGATTCACCAATGTGGCTTTAATCTGTTCCACTGC-ATCG-CATGGGGGA-T
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAAT-GTC--GGGGAAGC
** *
37062156 AAGATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
* *
37062206 AAGATTCACCGATGTGGCTTTAATCT
1 AAGATTCGCCGTTGTGGCTTTAATCT
37062232 GTTCCACTGC
Statistics
Matches: 292, Mismatches: 69, Indels: 30
0.75 0.18 0.08
Matches are distributed among these distances:
49 22 0.08
50 252 0.86
51 18 0.06
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGC
Found at i:37061981 original size:100 final size:100
Alignment explanation
Indices: 37061858--37062261 Score: 684
Period size: 100 Copynumber: 4.0 Consensus size: 100
37061848 GGGGAAGCAC
* * *
37061858 GATTCGCTGTTGTGGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCATGATTCACCGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
* *
37061923 CTTTAATCTGCTACACTGCATCGCCTGGGAGG-TAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGG-GGATAA
* *
37061958 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGCCGGGGAAACAAGATTCACCGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
37062023 CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
* *
37062058 GATTCGCTGTTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCAATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
*
37062123 CTTTAATCTGTTCCACTGCATCGCATGGGGGATAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
37062158 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
1 GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
* *
37062223 CTTTAATCTGTTCCACTGCATTGCCTGAGGGATAA
66 CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
37062258 GATT
1 GATT
37062262 TGCTTCTTCG
Statistics
Matches: 286, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
99 2 0.01
100 284 0.99
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (100 bp):
GATTCGCTATTGTAGCTTTAATCTTTTGAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
CTTTAATCTGTTCCACTGCATCGCCTGGGGGATAA
Found at i:37062456 original size:44 final size:44
Alignment explanation
Indices: 37062367--37062456 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
37062357 ATCTGTTCCA
* * *
37062367 CTGTAATCTCAGGGAAATAGGATAACCGGCTTCAATCTACTCCG
1 CTGTAATCTCAGGGAAATAAGATAACCAGCTTCAATCTACCCCG
* * * * *
37062411 CTGTAATCTCAGGGAGATAAGATATCTAGCTTCGATCTGCCCCG
1 CTGTAATCTCAGGGAAATAAGATAACCAGCTTCAATCTACCCCG
37062455 CT
1 CT
37062457 ACTGCTTAGG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (44 bp):
CTGTAATCTCAGGGAAATAAGATAACCAGCTTCAATCTACCCCG
Found at i:37062746 original size:88 final size:88
Alignment explanation
Indices: 37062657--37062964 Score: 444
Period size: 87 Copynumber: 3.5 Consensus size: 88
37062647 ACTTGTAATC
* * * *
37062657 TTCGATCTGCTTCACTGTCGATGCAGGAAGGCAATATCTGCTATCTTCAACCTA-CTCCACTGCA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTAGCTCCACTGCA
* * *
37062721 ACTGAGGGAGGCAAGGC-TGGTAT
66 ACCGATGGAGGCAAGGCTTTGT-T
* *
37062744 CTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTGCTATCTTTAACC-AGCTCCACTGC
1 -TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTAGCTCCACTGC
37062808 AACCGATGGAGGCAAGGCTTTGTT
65 AACCGATGGAGGCAAGGCTTTGTT
* *
37062832 TTCGATCTGCTCCGCTATCAATGCAGGAAGGCAAGATCTGCTATCTTTAA-CTAGCTCCACTGCA
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTAGCTCCACTGCA
37062896 ACCGATGGAGGCAAGGCTTTGTT
66 ACCGATGGAGGCAAGGCTTTGTT
** *
37062919 TTCGATCTGCTTCGCTGTCAATGCAGGCGGGCAAGATTTGCTATCT
1 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCT
37062965 CCACTGATCT
Statistics
Matches: 199, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
86 1 0.01
87 123 0.62
88 72 0.36
89 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.28
Consensus pattern (88 bp):
TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCTAGCTCCACTGCA
ACCGATGGAGGCAAGGCTTTGTT
Found at i:37062821 original size:44 final size:44
Alignment explanation
Indices: 37062773--37062910 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
37062763 CAGTGTAGGA
37062773 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
* * ** * * * * *
37062817 AGGCAAGGCTTTG-T-T-TTCGATCTGCTCCGCTATCAA-TGCA-GG
1 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACT-GCAACCG-ATGG
*
37062859 AAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
37062904 AGGCAAG
1 AGGCAAG
37062911 GCTTTGTTTT
Statistics
Matches: 66, Mismatches: 19, Indels: 18
0.64 0.18 0.17
Matches are distributed among these distances:
42 18 0.27
43 12 0.18
44 19 0.29
45 17 0.26
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
Found at i:37064128 original size:7 final size:7
Alignment explanation
Indices: 37064116--37064163 Score: 80
Period size: 7 Copynumber: 7.0 Consensus size: 7
37064106 TTAGCCTCTC
37064116 CATTTTT
1 CATTTTT
37064123 CATTTTT
1 CATTTTT
37064130 CATTTTT
1 CATTTTT
*
37064137 CA-TTCT
1 CATTTTT
37064143 CATTTTT
1 CATTTTT
37064150 CATTTTT
1 CATTTTT
37064157 CATTTTT
1 CATTTTT
37064164 TTTGACTCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 5 0.13
7 33 0.87
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:37064147 original size:20 final size:20
Alignment explanation
Indices: 37064122--37064160 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37064112 TCTCCATTTT
37064122 TCATTTTTCATTTTTCATTC
1 TCATTTTTCATTTTTCATTC
37064142 TCATTTTTCATTTTTCATT
1 TCATTTTTCATTTTTCATT
37064161 TTTTTTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (20 bp):
TCATTTTTCATTTTTCATTC
Found at i:37065755 original size:17 final size:17
Alignment explanation
Indices: 37065630--37065757 Score: 78
Period size: 19 Copynumber: 7.2 Consensus size: 17
37065620 GACACGAAGA
*
37065630 TTTTGAAACACGAGAATAT
1 TTTTAAAACACGA-AAT-T
* ** *
37065649 TTTCAAAATGCGAAAAT
1 TTTTAAAACACGAAATT
* *
37065666 TTTTGAAACACG-AGTT
1 TTTTAAAACACGAAATT
** *
37065682 TTTTTTAACACGAAAAT
1 TTTTAAAACACGAAATT
37065699 TTTTAAAACACGAAAAATT
1 TTTTAAAACACG--AAATT
* *
37065718 TTTGAAAACGCGAAATTTT
1 TTTTAAAACACGAAA--TT
*
37065737 TTTTAAAACACGAGATT
1 TTTTAAAACACGAAATT
37065754 TTTT
1 TTTT
37065758 TTGAAAGCGC
Statistics
Matches: 81, Mismatches: 23, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
16 12 0.15
17 30 0.37
18 2 0.02
19 37 0.46
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (17 bp):
TTTTAAAACACGAAATT
Found at i:37065804 original size:18 final size:18
Alignment explanation
Indices: 37065630--37065817 Score: 91
Period size: 17 Copynumber: 10.2 Consensus size: 18
37065620 GACACGAAGA
*
37065630 TTTTG-AAACACGAGAATA
1 TTTTGAAAACACGA-AATT
* ** *
37065648 TTTTCAAAATGCGAAAAT
1 TTTTGAAAACACGAAATT
*
37065666 TTTTG-AAACACG-AGTT
1 TTTTGAAAACACGAAATT
** *
37065682 TTTT-TTAACACGAAAAT
1 TTTTGAAAACACGAAATT
*
37065699 TTTT-AAAACACGAAAAAT
1 TTTTGAAAACACG-AAATT
*
37065717 TTTTGAAAACGCGAAATTT
1 TTTTGAAAACACGAAA-TT
* *
37065736 TTTTTAAAACACGAGATTTT
1 TTTTGAAAACACGA-A-ATT
* * *
37065756 TTTTGAAAGCGCAAAAATTT
1 TTTTGAAAACAC-GAAA-TT
*
37065776 TTGAATTGAAAACACGAGATT
1 TT---TTGAAAACACGAAATT
37065797 TTTTG-AAACACGAAATT
1 TTTTGAAAACACGAAATT
37065814 TTTT
1 TTTT
37065818 TTTAAAGGCG
Statistics
Matches: 127, Mismatches: 30, Indels: 27
0.69 0.16 0.15
Matches are distributed among these distances:
16 12 0.09
17 32 0.25
18 25 0.20
19 26 0.20
20 17 0.13
21 5 0.04
22 2 0.02
23 8 0.06
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (18 bp):
TTTTGAAAACACGAAATT
Found at i:37065813 original size:39 final size:37
Alignment explanation
Indices: 37065630--37065818 Score: 124
Period size: 36 Copynumber: 5.1 Consensus size: 37
37065620 GACACGAAGA
* ** * *
37065630 TTTTG-AAACACGAGAATATTTTCAAAATGCGAAA-AT
1 TTTTGAAAACACGAG-ATTTTTTTGAAACGCGAAATTT
* * *
37065666 TTTTG-AAACACGAG-TTTTTTT-TAACACGAAA-AT
1 TTTTGAAAACACGAGATTTTTTTGAAACGCGAAATTT
* **
37065699 TTTT-AAAACACGAAAAATTTTTGAAAACGCGAAATTT
1 TTTTGAAAACACGAGATTTTTTTG-AAACGCGAAATTT
* *
37065736 TTTTTAAAACACGAGATTTTTTTTGAAAGCGCAAAAATTT
1 TTTTGAAAACACGAGA-TTTTTTTGAAA-CGC-GAAATTT
*
37065776 TTGAATTGAAAACACGAGA-TTTTTTGAAACACGAAATTT
1 TT---TTGAAAACACGAGATTTTTTTGAAACGCGAAATTT
37065815 TTTT
1 TTTT
37065819 TTAAAGGCGA
Statistics
Matches: 123, Mismatches: 18, Indels: 24
0.75 0.11 0.15
Matches are distributed among these distances:
33 21 0.17
34 10 0.08
36 24 0.20
37 5 0.04
38 13 0.11
39 17 0.14
40 10 0.08
41 10 0.08
43 13 0.11
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (37 bp):
TTTTGAAAACACGAGATTTTTTTGAAACGCGAAATTT
Found at i:37065818 original size:18 final size:18
Alignment explanation
Indices: 37065665--37065818 Score: 91
Period size: 19 Copynumber: 8.3 Consensus size: 18
37065655 AATGCGAAAA
*
37065665 TTTTTGAAACACG-AGTT
1 TTTTTGAAACACGAAATT
* *
37065682 TTTTT-TAACACGAAA-A
1 TTTTTGAAACACGAAATT
* **
37065698 TTTTTAAAACACGAAAAA
1 TTTTTGAAACACGAAATT
*
37065716 TTTTTGAAAACGCGAAATTT
1 TTTTTG-AAACACGAAA-TT
* *
37065736 TTTTTAAAACACGAGATTT
1 TTTTTGAAACACGA-AATT
* *
37065755 TTTTTGAAAGCGCAAAAATT
1 TTTTTGAAA-CAC-GAAATT
*
37065775 TTTGAATTGAAAACACGAGA-T
1 TTT---TTG-AAACACGAAATT
37065796 TTTTTGAAACACGAAATT
1 TTTTTGAAACACGAAATT
37065814 TTTTT
1 TTTTT
37065819 TTAAAGGCGA
Statistics
Matches: 105, Mismatches: 19, Indels: 25
0.70 0.13 0.17
Matches are distributed among these distances:
16 11 0.10
17 24 0.23
18 15 0.14
19 26 0.25
20 14 0.13
21 5 0.05
22 2 0.02
23 5 0.05
24 3 0.03
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (18 bp):
TTTTTGAAACACGAAATT
Found at i:37066737 original size:27 final size:29
Alignment explanation
Indices: 37066703--37066765 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 29
37066693 TTTCCCCTTT
37066703 TTCTTTTTTATTCTTTGC-T-CTTTTTTC
1 TTCTTTTTTATTCTTTGCTTGCTTTTTTC
* *
37066730 TTCTTTTTTCTTTTTTGCTTGCTTTTTTC
1 TTCTTTTTTATTCTTTGCTTGCTTTTTTC
37066759 TT-TTTTT
1 TTCTTTTT
37066766 CTTGCCTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 16 0.50
28 6 0.19
29 10 0.31
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.78
Consensus pattern (29 bp):
TTCTTTTTTATTCTTTGCTTGCTTTTTTC
Found at i:37066745 original size:19 final size:19
Alignment explanation
Indices: 37066700--37066770 Score: 78
Period size: 17 Copynumber: 3.9 Consensus size: 19
37066690 CCCTTTCCCC
*
37066700 TTTTTCTTTTTT-ATT-CT
1 TTTTTCTTTTTTGCTTGCT
**
37066717 TTGCTCTTTTTT-CTT-CT
1 TTTTTCTTTTTTGCTTGCT
37066734 TTTTTCTTTTTTGCTTGCT
1 TTTTTCTTTTTTGCTTGCT
*
37066753 TTTTTCTTTTTTTCTTGC
1 TTTTTCTTTTTTGCTTGC
37066771 CTCTTGGTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 24 0.52
18 3 0.07
19 19 0.41
ACGTcount: A:0.01, C:0.17, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTTCTTTTTTGCTTGCT
Found at i:37067223 original size:31 final size:32
Alignment explanation
Indices: 37067175--37067241 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 32
37067165 ATGTAATTAC
*
37067175 AAAATATTAGGGGGTCAAAATGTAAATTTAGA
1 AAAAAATTAGGGGGTCAAAATGTAAATTTAGA
* *
37067207 AAAAAATTA-GGGGTCAAAATGTAATTTTTGA
1 AAAAAATTAGGGGGTCAAAATGTAAATTTAGA
37067238 AAAA
1 AAAA
37067242 TTCGAGGGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 24 0.75
32 8 0.25
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.28
Consensus pattern (32 bp):
AAAAAATTAGGGGGTCAAAATGTAAATTTAGA
Found at i:37068158 original size:76 final size:76
Alignment explanation
Indices: 37067515--37068814 Score: 1569
Period size: 76 Copynumber: 16.9 Consensus size: 76
37067505 CGACATGTGC
* *
37067515 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG---AAAAACATAAATTTAAAAG
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AA-
* * *
37067577 AAATACCTCGGCATGG
61 AAATACCTCAGCGTGA
* *
37067593 TCCGAGGCTCAACTCACCTCTCGTAATATGAGTTTTGATTTTTG---AAAAACATAAATTTAAAA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAG--TTGATTTTTGAAAAAAAACAGAAA-TT--AA
* * *
37067655 GAAATACCTCGGCATGG
61 -AAATACCTCAGCGTGA
* * *
37067672 TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG---AAAAACATAAATTTAAAAG
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AA-
* * *
37067734 AAATACCTCGGCATGG
61 AAATACCTCAGCGTGA
* * * *
37067750 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTG---AAAAACATAAATTTAAAAG
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AA-
* *
37067811 AAATACCTCGGCATGA
61 AAATACCTCAGCGTGA
* * * * * *
37067827 TCCAAGGCTCAACTTAACTCTCGCAATATGAGTTGATTTTTG---AAAAACATAAATTTAAAAGA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAA-TTAAAA-A
*
37067889 TACCTCAGTATGTGA
64 TACCTCAG--CGTGA
* *
37067904 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AAAAACAGAAATTTAAAAGA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAA-TT--AA-A
*
37067966 AATACCTCGGCATGTG-
62 AATACCTCAGC--GTGA
* * ****
37067982 TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATTTAAAA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGAAAAAAAACAGAAA-TT---A
37068047 AAAATACCTCAGCGTGA
60 AAAATACCTCAGCGTGA
*
37068064 CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068129 CCTCAGCGTGA
66 CCTCAGCGTGA
*
37068140 CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068205 CCTCAGCGTGA
66 CCTCAGCGTGA
*
37068216 CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068281 CCTCAGCGTGA
66 CCTCAGCGTGA
* * *
37068292 CCCGAAGCTCAACTCACATCTCGTACTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068357 CCTCAGCGTGA
66 CCTCAGCGTGA
* *
37068368 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAATAGAAATTTAAAAAA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAA-TT-AAAAA
* *
37068433 TACCTTAGTGTGA
64 TACCTCAGCGTGA
*
37068446 CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068511 CCTCAGCGTGA
66 CCTCAGCGTGA
* * *
37068522 CCCGAAGCTCAACTCACATCTCGTACTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068587 CCTCAGCGTGA
66 CCTCAGCGTGA
* * *
37068598 CCCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATTTTTGAAAAAAAACAGCAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068663 CCTCAGCGTGA
66 CCTCAGCGTGA
* * *
37068674 CCCGAGGCTCAACTCACCTCTCGTACTATGAGTTGATTTTTGAAAAACAACAGAAATTAAAAATG
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
*
37068739 CCTCAACGTGA
66 CCTCAGCGTGA
*
37068750 CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
1 CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
37068815 TTTCTTGAAA
Statistics
Matches: 1138, Mismatches: 63, Indels: 44
0.91 0.05 0.04
Matches are distributed among these distances:
74 2 0.00
75 10 0.01
76 586 0.51
77 153 0.13
78 208 0.18
79 87 0.08
80 27 0.02
81 3 0.00
82 33 0.03
83 25 0.02
84 4 0.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (76 bp):
CCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATA
CCTCAGCGTGA
Found at i:37068487 original size:382 final size:381
Alignment explanation
Indices: 37067438--37068812 Score: 1644
Period size: 382 Copynumber: 3.6 Consensus size: 381
37067428 CTCGGCGTGC
* * * * * * **
37067438 GACCCGAAGCTAAACTCACCTCT-TTGATTATGAGTTGATCTTCGAAAAACAAAAATCGAAAATA
1 GACCCGAGGCTCAACTCACCTCTCGT-ATTATGAGTTGATTTTTGAAAAACAGAAATTAAAAATA
* *
37067502 CCTC-GACATGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAT
65 CCTCAGAC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAG
* * ** *
37067566 AAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCTCGTAATATGAGTTTTGA
127 AAATTT-AAAGAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG--TTGA
* * * **
37067631 TTTTTG---AAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCCGAGGCTCAACTCACCTCT
189 TTTTTGAAAAAAAACAGAAATTTAAAA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCT
* * * * * ** *
37067693 CGCAATATGAGTTGATTTTTTG---AAAAACATAAATTTAAAAGAAATACCTCGGCATGGTCTGA
253 CGTATTATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AA-AAATACCTCAGCGTGACCCGA
* *
37067755 GGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTG---AAAAACATAAATTTAAAAGAAATA
313 GGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGAAAAAAAACAGAAA-TT--AA-AAATA
* *
37067816 CCTCGGCAT
373 CCTCAGCGT
* * * * * * *
37067825 GATCCAAGGCTCAACTTAACTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTTAAAAGAT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAGAAA-TTAAAA-AT
* *
37067890 ACCTCAGTATGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGA
64 ACCTCAG-ACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGA
* *
37067955 AATTTAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
128 AATTT-AAAGAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
****
37068019 TTTTTTTTTGAAAAACAGAAATTTAAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTC
189 -TTTTTGAAAAAAAACAGAAATTT-AAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTC
37068084 TCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCT
252 TCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCT
*
37068149 CAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGT
317 CAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGT
37068214 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG---AAAAACAGAAATTAAAAA
* * * *
37068279 TACCTCAG-CGTGACCCGAAGCTCAACTCACATCTCGTACTATGAGTTGATTTTTGAAAAAAAAC
63 TACCTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG---AAAAAC
37068343 AGAAA-TT-AA-AAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
125 AGAAATTTAAAGAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
37068405 TTTTGAAAAAAAATAGAAATTT-AAAAAATACCTTAGTGTGACCCGAGGCTCAACTCACCTCTCG
190 TTTTGAAAAAAAACAGAAATTTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCG
*
37068469 TATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAAGCTCAA
255 TATTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAA
* *
37068534 CTCACATCTCGTACTATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGT
320 CTCACCTCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGT
* *
37068596 GACCCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATTTTTGAAAAAAAACAGCAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG---AAAAACAGAAATTAAAAA
* *
37068661 TACCTCAG-CGTGACCCGAGGCTCAACTCACCTCTCGTACTATGAGTTGATTTTTGAAAAACAAC
63 TACCTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAA-AAC
* * * *
37068725 AGAAA-TT-AA-AAATGCCTCAACGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGAT
125 AGAAATTTAAAGAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
37068787 TTTTGAAAAAAAACAGAAA-TTAAAAA
190 TTTTGAAAAAAAACAGAAATTTAAAAA
37068813 TATTTCTTGA
Statistics
Matches: 886, Mismatches: 73, Indels: 63
0.87 0.07 0.06
Matches are distributed among these distances:
381 7 0.01
382 363 0.41
384 18 0.02
385 3 0.00
386 35 0.04
387 57 0.06
388 83 0.09
389 131 0.15
390 65 0.07
391 27 0.03
392 71 0.08
393 16 0.02
394 10 0.01
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (381 bp):
GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAGAAATTAAAAATAC
CTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAT
TTAAAGAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAAAAACAGAAATTTAAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTAT
GAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACC
TCTCGTAATATGAGTTGATTTTTGAAAAAAAACAGAAATTAAAAATACCTCAGCGT
Found at i:37069679 original size:6 final size:6
Alignment explanation
Indices: 37069664--37069751 Score: 85
Period size: 6 Copynumber: 14.8 Consensus size: 6
37069654 ATCTTGATTT
* * *
37069664 TTTTTC TTTTTG TTTTT- TCTTT- TTTCTG TTTTTG TTTTTG TTTGTT-
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTT-TTG
*
37069710 TTTTTG TGTTTG TTGTTT- TTTTTG TTTGTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TT-TTTG TTTTTG TTT-TTG TTTTTG TTTTT
37069752 TTAAGGCATA
Statistics
Matches: 69, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
5 12 0.17
6 46 0.67
7 11 0.16
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (6 bp):
TTTTTG
Found at i:37069680 original size:7 final size:7
Alignment explanation
Indices: 37069670--37069752 Score: 64
Period size: 7 Copynumber: 11.7 Consensus size: 7
37069660 ATTTTTTTTC
37069670 TTTTTGT
1 TTTTTGT
*
37069677 TTTTTCT
1 TTTTTGT
*
37069684 TTTTTCT
1 TTTTTGT
37069691 GTTTTTG-
1 -TTTTTGT
37069698 TTTTTGT
1 TTTTTGT
37069705 TTGTTT-T
1 TT-TTTGT
*
37069712 TTTGTGT
1 TTTTTGT
*
37069719 TTGTTGT
1 TTTTTGT
37069726 TTTTT-T
1 TTTTTGT
*
37069732 TGTTTGTT
1 TTTTTG-T
37069740 GTTTTTGT
1 -TTTTTGT
37069748 TTTTT
1 TTTTT
37069753 TAAGGCATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
6 13 0.21
7 33 0.54
8 10 0.16
9 5 0.08
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (7 bp):
TTTTTGT
Found at i:37069680 original size:16 final size:15
Alignment explanation
Indices: 37069661--37069753 Score: 87
Period size: 16 Copynumber: 5.8 Consensus size: 15
37069651 TTCATCTTGA
*
37069661 TTTTTTTTCTTTTTG
1 TTTTTTTTTTTTTTG
*
37069676 TTTTTTCTTTTTTCTG
1 TTTTTT-TTTTTTTTG
*
37069692 TTTTTGTTTTTGTTTG
1 TTTTT-TTTTTTTTTG
*
37069708 TTTTTTTGTGTTTGTTG
1 TTTTTTT-T-TTTTTTG
*
37069725 TTTTTTTTGTTTGTTG
1 TTTTTTTT-TTTTTTG
37069741 TTTTTGTTTTTTT
1 TTTTT-TTTTTTT
37069754 AAGGCATAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
15 8 0.12
16 42 0.64
17 16 0.24
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:37075475 original size:17 final size:17
Alignment explanation
Indices: 37075455--37075552 Score: 65
Period size: 18 Copynumber: 5.5 Consensus size: 17
37075445 AATGTGAAAA
*
37075455 TTTTTGAAACACGAGTT
1 TTTTTGAAACACGAATT
* **
37075472 TTTTT-TAACACGAAAA
1 TTTTTGAAACACGAATT
* **
37075488 TTTTTAAAACACGAAAAA
1 TTTTTGAAACACG-AATT
37075506 TTTTTGAAA-ACGCAAAATTT
1 TTTTTGAAACACG---AA-TT
37075526 TTTTTGAAACACGAGATT
1 TTTTTGAAACACGA-ATT
37075544 TTTTTGAAA
1 TTTTTGAAA
37075553 GTGCGAAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
16 12 0.18
17 14 0.21
18 24 0.36
19 4 0.06
20 9 0.14
21 3 0.05
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (17 bp):
TTTTTGAAACACGAATT
Found at i:37075510 original size:19 final size:19
Alignment explanation
Indices: 37075478--37075539 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
37075468 AGTTTTTTTT
37075478 AACACG-AAAA-TTTTTAA
1 AACACGAAAAATTTTTTAA
*
37075495 AACACGAAAAATTTTTGAA
1 AACACGAAAAATTTTTTAA
* * *
37075514 AACGC-AAAATTTTTTTTGA
1 AACACGAAAA-ATTTTTTAA
37075533 AACACGA
1 AACACGA
37075540 GATTTTTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
19 20 0.57
20 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (19 bp):
AACACGAAAAATTTTTTAA
Found at i:37075510 original size:33 final size:34
Alignment explanation
Indices: 37075450--37075527 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 34
37075440 TTCAAAATGT
* *** * *
37075450 GAAAATTTTTGAAACACG-AGTTTTTTTTAACAC
1 GAAAATTTTTAAAACACGAAAAATTTTTGAAAAC
37075483 GAAAATTTTTAAAACACGAAAAATTTTTGAAAAC
1 GAAAATTTTTAAAACACGAAAAATTTTTGAAAAC
37075517 GCAAAATTTTT
1 G-AAAATTTTT
37075528 TTTGAAACAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 17 0.46
34 11 0.30
35 9 0.24
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (34 bp):
GAAAATTTTTAAAACACGAAAAATTTTTGAAAAC
Found at i:37075539 original size:38 final size:39
Alignment explanation
Indices: 37075488--37075566 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 39
37075478 AACACGAAAA
37075488 TTTTTAAAACACGAAAAATTTTTGAAAACGC-AAAATTT
1 TTTTTAAAACACGAAAAATTTTTGAAAACGCGAAAATTT
* * ** **
37075526 TTTTTGAAACACGAGATTTTTTTGAAAGTGCGAAAATTT
1 TTTTTAAAACACGAAAAATTTTTGAAAACGCGAAAATTT
37075565 TT
1 TT
37075567 GAATTGAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 25 0.74
39 9 0.26
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.39
Consensus pattern (39 bp):
TTTTTAAAACACGAAAAATTTTTGAAAACGCGAAAATTT
Found at i:37075549 original size:18 final size:18
Alignment explanation
Indices: 37075455--37075608 Score: 93
Period size: 17 Copynumber: 8.3 Consensus size: 18
37075445 AATGTGAAAA
*
37075455 TTTTTGAAACACG-AGTT
1 TTTTTGAAACACGAAATT
* *
37075472 TTTTT-TAACACGAAA-A
1 TTTTTGAAACACGAAATT
* **
37075488 TTTTTAAAACACGAAAAA
1 TTTTTGAAACACGAAATT
37075506 TTTTTGAAA-ACGCAAAATTT
1 TTTTTGAAACACG--AAA-TT
*
37075526 TTTTTGAAACACGAGATT
1 TTTTTGAAACACGAAATT
**
37075544 TTTTTGAAAGTGCGAAAATT
1 TTTTTGAAA-CACG-AAATT
*
37075564 TTTGAATTGAAAACACGAGA-T
1 TTT---TTG-AAACACGAAATT
37075585 TTTTTGAAACACGAAATGT
1 TTTTTGAAACACGAAAT-T
37075604 TTTTT
1 TTTTT
37075609 AAAGGCGTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
16 11 0.10
17 27 0.25
18 23 0.21
19 13 0.12
20 16 0.15
21 7 0.07
22 2 0.02
23 5 0.05
24 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (18 bp):
TTTTTGAAACACGAAATT
Found at i:37075813 original size:18 final size:19
Alignment explanation
Indices: 37075792--37075839 Score: 73
Period size: 18 Copynumber: 2.6 Consensus size: 19
37075782 GTCTTCGGTT
*
37075792 TTTTTTTCTT-CTTTTTTC
1 TTTTTTGCTTGCTTTTTTC
37075810 TTTTTTGCTTGCTTTTTTC
1 TTTTTTGCTTGCTTTTTTC
37075829 TTTTTT-CTTGC
1 TTTTTTGCTTGC
37075840 CTCTTGGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.77
Consensus pattern (19 bp):
TTTTTTGCTTGCTTTTTTC
Found at i:37076875 original size:54 final size:54
Alignment explanation
Indices: 37076784--37076890 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
37076774 AACATATGCC
* *
37076784 TCGCTCAAAAGGAAAATCTGGGTCTGTAGCAGAGTCATTCACGTAATTGATATT
1 TCGCCCAAAAGGAAAATCTGAGTCTGTAGCAGAGTCATTCACGTAATTGATATT
* * * * *
37076838 TCGCCCAATAGGAAAATTTGAGTCTGTAGCAGCGTCATTCATGTGATTGATAT
1 TCGCCCAAAAGGAAAATCTGAGTCTGTAGCAGAGTCATTCACGTAATTGATAT
37076891 CTGGAGACCC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (54 bp):
TCGCCCAAAAGGAAAATCTGAGTCTGTAGCAGAGTCATTCACGTAATTGATATT
Found at i:37081293 original size:12 final size:12
Alignment explanation
Indices: 37081214--37081295 Score: 62
Period size: 12 Copynumber: 7.0 Consensus size: 12
37081204 CATATAAATA
*
37081214 AATAGAAATAA-
1 AATAAAAATAAT
*
37081225 AATCAAATATAAT
1 AAT-AAAAATAAT
* *
37081238 AATAAGAACAAT
1 AATAAAAATAAT
*
37081250 AAT--AAATAGT
1 AATAAAAATAAT
*
37081260 GATAAAAATAAT
1 AATAAAAATAAT
**
37081272 AATAGCAATAAT
1 AATAAAAATAAT
37081284 AATAAAAATAAT
1 AATAAAAATAAT
37081296 TAAATGGTTA
Statistics
Matches: 52, Mismatches: 15, Indels: 7
0.70 0.20 0.09
Matches are distributed among these distances:
10 6 0.12
11 3 0.06
12 40 0.77
13 3 0.06
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.24
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:37086301 original size:4 final size:4
Alignment explanation
Indices: 37086265--37086359 Score: 61
Period size: 4 Copynumber: 23.8 Consensus size: 4
37086255 AAAGGAATTA
* * * * * *
37086265 AAAT AAAA AAAT GAAT GAAT GAAT -AAT ATAT AAAT AAAT AAGT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
37086312 AAGT AAGT AAAT GAAT AAAAT AAA- AGGAAT -AAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT -AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAA
37086360 AGGAAACAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
3 7 0.09
4 62 0.84
5 5 0.07
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:37088060 original size:51 final size:51
Alignment explanation
Indices: 37087979--37088083 Score: 138
Period size: 51 Copynumber: 2.1 Consensus size: 51
37087969 AGAGATAAGG
* * *
37087979 CTTGTAGTTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCAA
1 CTTGTAGCTTTAATCTGCTCCAATGCAACTTCAGAGAAATAAGATTTGCAA
* * * * *
37088030 CTTGTAGCTTTAATCTGTTCCAATGTAACTTTAGGGAAATAAGATTTGTAA
1 CTTGTAGCTTTAATCTGCTCCAATGCAACTTCAGAGAAATAAGATTTGCAA
37088081 CTT
1 CTT
37088084 TAATTTGCTC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (51 bp):
CTTGTAGCTTTAATCTGCTCCAATGCAACTTCAGAGAAATAAGATTTGCAA
Found at i:37088191 original size:44 final size:44
Alignment explanation
Indices: 37087873--37088348 Score: 323
Period size: 44 Copynumber: 10.5 Consensus size: 44
37087863 TCTAACCCAT
* ** * *
37087873 TGCAACTTTAGGGAGATAAGATTCATAGCTTCAATCTGCTCTAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
* * * * * * *
37087917 TACGATTTTAGAGAGATAA-A-GT-TCGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
* ** ** *
37087958 TGCAACTTTAAAGAGATAAGGCTTGTAGTTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
* * *
37088002 TGCAACTTCAGAGAGATAAGATTTGCAACTTGTAGCTTTAATCTGTTCCAA
1 TGCAACTTCAGGGAGATAAGA--T-----TTGTAGCTTTAATCTGCTCCAC
* * * * * *
37088053 TGTAACTTTAGGGAAATAAGATTTGTAACTTTAATTTGCTCTGA-
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTC-CAC
* * * * *
37088097 TGTAACTTTAAGGAGATAAGATTTGTGACTAGTAGCTTTAATATGTTCCAC
1 TGCAACTTCAGGGAGATAAGA--T-T---T-GTAGCTTTAATCTGCTCCAC
* * *
37088148 TGCAACTTCAGGAAAATAAGATTCGTAGCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
* * * *
37088192 TACAACTTTAGGGAGATAAGATTTTTTATCTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGA-TTTGTAGCTTTAATCTGCTCCAC
* ** *
37088237 T-CTAACTTCAGGGAGATAAGATTTGCTATCTTCGATCTGCTTCAC
1 TGC-AACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCAC
* * **
37088282 TGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTACTCTGC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
*
37088326 TGCAACTTCAGGGGGATAAGATT
1 TGCAACTTCAGGGAGATAAGATT
37088349 CGCTACGGTG
Statistics
Matches: 342, Mismatches: 67, Indels: 46
0.75 0.15 0.10
Matches are distributed among these distances:
41 31 0.09
43 2 0.01
44 157 0.46
45 78 0.23
46 2 0.01
47 1 0.00
48 1 0.00
49 2 0.01
50 2 0.01
51 66 0.19
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
Found at i:37088199 original size:95 final size:94
Alignment explanation
Indices: 37087941--37088308 Score: 338
Period size: 95 Copynumber: 3.9 Consensus size: 94
37087931 GATAAAGTTC
* * ** * ** *
37087941 GCTTTAATCTGCTCCACTGCAACTTTAAAGAGATAAGGCTTGTAGTTTTAATCTGCTCCACTGCA
1 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
* **
37088006 AC-TTCAGAGAGATAAGATTTGCAACTTGTA
66 ACTTTAAG-GAGATAAGATTTGTGAC-TGTA
* * * * * * *
37088036 GCTTTAATCTGTTCCAATGTAACTTTAGGGAAATAAGATTTGTAACTTTAATTTGCTCTGA-TGT
1 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTC-CACTGC
37088100 AACTTTAAGGAGATAAGATTTGTGACTAGTA
65 AACTTTAAGGAGATAAGATTTGTGACT-GTA
* * * *
37088131 GCTTTAATATGTTCCACTGCAACTTCAGGAAAATAAGATTCGTAGCTTTAATCTGCTCCACTACA
1 GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
*
37088196 ACTTTAGGGAGATAAGATTT-T---T-TA
66 ACTTTAAGGAGATAAGATTTGTGACTGTA
* * * * ** *
37088220 TCTTTAATCTGCTCCACT-CTAACTTCAGGGAGATAAGATTTGCTATCTTCGATCTGCTTCACTG
1 GCTTTAATCTGTTCCACTGC-AACTTCAGGGAAATAAGATTTG-TAGCTTTAATCTGCTCCACTG
* *
37088284 CAACTTCAGGGAGATAAGATTTGTG
64 CAACTTTAAGGAGATAAGATTTGTG
37088309 GCTTTAATCT
Statistics
Matches: 225, Mismatches: 40, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
88 1 0.00
89 36 0.16
90 37 0.16
91 2 0.01
94 3 0.01
95 141 0.63
96 5 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (94 bp):
GCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
ACTTTAAGGAGATAAGATTTGTGACTGTA
Done.