Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr8 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 70076365 ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32 Warning! 3341059 characters in sequence are not A, C, G, or T File 111 of 210 Found at i:37393064 original size:86 final size:87 Alignment explanation
Indices: 37392957--37393118 Score: 220 Period size: 87 Copynumber: 1.9 Consensus size: 87 37392947 GTTACAAGTC * * * * 37392957 TTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGAT-AGCGAATCTTATCT-CTCTGAAGTTGC 1 TTATCTCCCTAAAGTTACAGTGGAACAGACTAAAAATAAGCCAATCTTATCTCCT-TGAAGTTGC * 37393020 AGTAGAGCAGATCATATCAAACT 65 AGTAGAACAGATCATATCAAACT * ** 37393043 TTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAATAAGCCAATCTTATCTCCTTGAAGTTGCA 1 TTATCTCCCTAAAGTTACAGTGGAACAGACTAAAAATAAGCCAATCTTATCTCCTTGAAGTTGCA * 37393108 GTGGAACAGAT 66 GTAGAACAGAT 37393119 TAAAGACAAG Statistics Matches: 65, Mismatches: 9, Indels: 3 0.84 0.12 0.04 Matches are distributed among these distances: 86 31 0.48 87 32 0.49 88 2 0.03 ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28 Consensus pattern (87 bp): TTATCTCCCTAAAGTTACAGTGGAACAGACTAAAAATAAGCCAATCTTATCTCCTTGAAGTTGCA GTAGAACAGATCATATCAAACT Found at i:37393156 original size:49 final size:47 Alignment explanation
Indices: 37392913--37393493 Score: 397 Period size: 49 Copynumber: 12.7 Consensus size: 47 37392903 ATAGCAAACA * * * * * 37392913 TTATCTCCCTGAAGTTGTAGTGGAGTAGGTT---GA-AGTTACAAGTC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAG-CACAAATC * * * * * * 37392957 TTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAG--CGAATC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * * * * * 37393002 TTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATATCA-AACT- 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * * * * 37393043 TTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAATAAGC-C-AATC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-CAGCACAAATC * * 37393089 TTATCTCCTTGAAGTTGCAGTGGAACAGATTAAAGACAAGCTACAAATC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-AGC-ACAAATC ** * * 37393138 TTATCTCATTGAAGTTGCAGTGGAGTAGATTAAAG-C--CACAAACC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * * * * * * * 37393182 TTTTCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAATA-AACCAATC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * 37393228 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGTTACAAAT- 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACA-G-CACAAATC * 37393276 TTCATCTCCCTGAAGTTACAGTGGAGCAGATTAAAG-C--CACAAA-C 1 TT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * * 37393320 TTTATCTCCCCGAAGTTGCATTGGAGCAGATTAAAGACGGGCTACAAATC 1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-AGC-ACAAATC * * * * 37393370 TTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGACGGGCTACAAATC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAC-AGC-ACAAATC * * * 37393419 TTATCTCTCTAAAGTTGCAGTGGAGTAGATTAAAG-C--CACAAA-C 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC * * 37393462 TTTATCTCCTTGAAGTTGCAGTGGAGTAGATT 1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT 37393494 GAAGTTATTA Statistics Matches: 432, Mismatches: 73, Indels: 64 0.76 0.13 0.11 Matches are distributed among these distances: 41 27 0.06 42 3 0.01 43 1 0.00 44 127 0.29 45 37 0.09 46 73 0.17 47 2 0.00 48 9 0.02 49 152 0.35 50 1 0.00 ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28 Consensus pattern (47 bp): TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACAGCACAAATC Found at i:37393202 original size:139 final size:138 Alignment explanation
Indices: 37392955--37393486 Score: 614 Period size: 139 Copynumber: 3.9 Consensus size: 138 37392945 AAGTTACAAG * * * * * 37392955 TCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATA-G---CGAATCTTATCTCTCTGAAG 1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAATCTTATCTCT-TGAAG * * * * * 37393016 TTGCAGTAGAGCAGATCATA---TCAAACTTTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAA 65 TTGCAGTGGAGTAGATTAAAGCCACAAACTTTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAA 37393078 ATAAGCCAA 130 ATAAGCCAA * * * * 37393087 TCTTATCTCCTTGAAGTTGCAGTGGAACAGATTAAAGACAAGCTACAAATCTTATCTCATTGAAG 1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAATCTTATCTC-TTGAAG 37393152 TTGCAGTGGAGTAGATTAAAGCCACAAACCTTT-TCTCCCTAAAGTTGCAGTGGAACAGGTTAAA 65 TTGCAGTGGAGTAGATTAAAGCCACAAA-CTTTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAA * 37393216 AATAAACCAA 129 AATAAGCCAA * * 37393226 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGTTACAAAT-TTCATCTCCCTGAA 1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAATCTT-ATCT-CTTGAA * * ** * * * 37393290 GTTACAGTGGAGCAGATTAAAGCCACAAACTTTATCTCCCCGAAGTTGCATTGGAGCAGATTAAA 64 GTTGCAGTGGAGTAGATTAAAGCCACAAACTTTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAA * *** 37393355 GACGGGCTACAAA 129 AATAAGC--C-AA * * * * 37393368 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGACGGGCTACAAATCTTATCTCTCTAAAG 1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAATCTTATCTCT-TGAAG * * 37393433 TTGCAGTGGAGTAGATTAAAGCCACAAACTTTATCTCCTTGAAGTTGCAGTGGA 65 TTGCAGTGGAGTAGATTAAAGCCACAAACTTTATCTCCCTAAAGTTGCAGTGGA 37393487 GTAGATTGAA Statistics Matches: 340, Mismatches: 43, Indels: 24 0.84 0.11 0.06 Matches are distributed among these distances: 132 33 0.10 133 1 0.00 136 33 0.10 137 1 0.00 138 6 0.02 139 152 0.45 140 5 0.01 141 2 0.01 142 105 0.31 143 2 0.01 ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27 Consensus pattern (138 bp): TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAATCTTATCTCTTGAAGT TGCAGTGGAGTAGATTAAAGCCACAAACTTTATCTCCCTAAAGTTGCAGTGGAACAGGTTAAAAA TAAGCCAA Found at i:37393487 original size:93 final size:90 Alignment explanation
Indices: 37392913--37393540 Score: 369 Period size: 93 Copynumber: 6.9 Consensus size: 90 37392903 ATAGCAAACA * * * * * * * 37392913 TTATCTCCCTGAAGTTGTAGTGGAGTAGGTT--G-AAGTTACAAGTCTTATCTCCCTAAAGTTAC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATCTTATCTCCCTGAAGTTGC * * ** * 37392975 AGTGGAGCAGACTGAAGATAGCGAAT 66 AGTGGAGCAGATTAAAGCCA-CAAAT * * * * * 37393001 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--CATA--T-CAAA-CTTTATCTCCCTAAAGTT 1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATC-TTATCTCCCTGAAGTT * * *** * 37393059 GCAGTGGAACAGGTTAAAAATAAGCCAAT 64 GCAGTGGAGCAGATT-AAAGCCA-CAAAT * * ** 37393088 CTTATCTCCTTGAAGTTGCAGTGGAACAGATTAAAGACAAGCTACAAATCTTATCTCATTGAAGT 1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGA-AAGCTACAAATCTTATCTCCCTGAAGT * 37393153 TGCAGTGGAGTAGATTAAAGCCACAAACCT 63 TGCAGTGGAGCAGATTAAAGCCACAAA--T * * * *** * 37393183 TT-TCTCCCTAAAGTTGCAGTGGAACAGGTTAA-AAATAAACCAATCTTATCTCCCTGAAGTTGC 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATCTTATCTCCCTGAAGTTGC ** 37393246 AGTGGAGCAGATTGAAGACAGGTTACAAAT 66 AGTGGAGCAGATT--A-A-A-GCCACAAAT * * * 37393276 TTCATCTCCCTGAAGTTACAGTGGAGCAGATT---AAAGCCACAAA-CTTTATCTCCCCGAAGTT 1 TT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATC-TTATCTCCCTGAAGTT * 37393337 GCATTGGAGCAGATTAAAGACGGGCTACAAAT 64 GCAGTGGAGCAGATTAAAG-C---C-ACAAAT * * ** * * 37393369 CTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGACGGGCTACAAATCTTATCTCTCTAAAGT 1 -TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGA-AAGCTACAAATCTTATCTCCCTGAAGT * 37393434 TGCAGTGGAGTAGATTAAAGCCACAAACT 63 TGCAGTGGAGCAGATTAAAGCCACAAA-T * * * ** * * * 37393463 TTATCTCCTTGAAGTTGCAGTGGAGTAGATT--G-AAGTTATTAATCCTATCTCCCTAAAGTTGT 1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATCTTATCTCCCTGAAGTTGC 37393525 AGTGGAGC-GAGTTAAA 66 AGTGGAGCAGA-TTAAA 37393541 ATGATGAATC Statistics Matches: 422, Mismatches: 81, Indels: 73 0.73 0.14 0.13 Matches are distributed among these distances: 85 1 0.00 86 30 0.07 87 37 0.09 88 37 0.09 89 26 0.06 90 38 0.09 91 3 0.01 92 5 0.01 93 132 0.31 94 12 0.03 95 60 0.14 96 1 0.00 97 2 0.00 98 37 0.09 99 1 0.00 ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28 Consensus pattern (90 bp): TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGAAAGCTACAAATCTTATCTCCCTGAAGTTGC AGTGGAGCAGATTAAAGCCACAAAT Found at i:37393866 original size:23 final size:23 Alignment explanation
Indices: 37393827--37393880 Score: 65 Period size: 23 Copynumber: 2.3 Consensus size: 23 37393817 CGGGCCCAAG * 37393827 ACCAAATACAAATAATAAATAAA 1 ACCAAATAAAAATAATAAATAAA * 37393850 ACCAAA-AAAAATAAATAAATAAG 1 ACCAAATAAAAAT-AATAAATAAA * 37393873 TCCAAATA 1 ACCAAATA 37393881 TCAAAAGTCC Statistics Matches: 26, Mismatches: 3, Indels: 3 0.81 0.09 0.09 Matches are distributed among these distances: 22 5 0.19 23 20 0.77 24 1 0.04 ACGTcount: A:0.69, C:0.13, G:0.02, T:0.17 Consensus pattern (23 bp): ACCAAATAAAAATAATAAATAAA Found at i:37395178 original size:4 final size:4 Alignment explanation
Indices: 37395157--37395208 Score: 61 Period size: 4 Copynumber: 13.0 Consensus size: 4 37395147 CATCATTCCT * * * 37395157 TTTA TTTTA TTCA TTTA TTTA TTTA TATA -TTA TTTA TTCA TTTA TTTA 1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA 37395205 TTTA 1 TTTA 37395209 CTATCTTAAT Statistics Matches: 40, Mismatches: 6, Indels: 3 0.82 0.12 0.06 Matches are distributed among these distances: 3 2 0.05 4 34 0.85 5 4 0.10 ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69 Consensus pattern (4 bp): TTTA Found at i:37395191 original size:15 final size:16 Alignment explanation
Indices: 37395169--37395208 Score: 55 Period size: 15 Copynumber: 2.6 Consensus size: 16 37395159 TATTTTATTC * 37395169 ATTTATTTATTTATAT 1 ATTTATTTATTCATAT * 37395185 A-TTATTTATTCATTT 1 ATTTATTTATTCATAT 37395200 ATTTATTTA 1 ATTTATTTA 37395209 CTATCTTAAT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 15 13 0.62 16 8 0.38 ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68 Consensus pattern (16 bp): ATTTATTTATTCATAT Found at i:37400077 original size:11 final size:12 Alignment explanation
Indices: 37400049--37400082 Score: 52 Period size: 11 Copynumber: 2.8 Consensus size: 12 37400039 GCCCAAACGT 37400049 CGAAATTTTTGAA 1 CGAAATTTTT-AA 37400062 CGAAATTTTT-A 1 CGAAATTTTTAA 37400073 CGAAATTTTT 1 CGAAATTTTT 37400083 CCGTAAAATT Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 11 11 0.52 13 10 0.48 ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44 Consensus pattern (12 bp): CGAAATTTTTAA Found at i:37412423 original size:29 final size:31 Alignment explanation
Indices: 37412367--37412430 Score: 96 Period size: 30 Copynumber: 2.1 Consensus size: 31 37412357 AACCTCTAAA ** 37412367 GGGACCTTATAACAAATTTTATTAGTTT-TG 1 GGGACCTTATAACAAATTTTACCAGTTTCTG 37412397 GGGACCTTATAAC-AATTTTACCAGTTTCTG 1 GGGACCTTATAACAAATTTTACCAGTTTCTG 37412427 GGGA 1 GGGA 37412431 TTTAATCGTT Statistics Matches: 31, Mismatches: 2, Indels: 2 0.89 0.06 0.06 Matches are distributed among these distances: 29 12 0.39 30 19 0.61 ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38 Consensus pattern (31 bp): GGGACCTTATAACAAATTTTACCAGTTTCTG Found at i:37414980 original size:15 final size:15 Alignment explanation
Indices: 37414960--37415011 Score: 50 Period size: 15 Copynumber: 3.2 Consensus size: 15 37414950 ACTACAAAAC 37414960 ATTTATTATTAATAT 1 ATTTATTATTAATAT * 37414975 ATTTATAATTGTAATAAAT 1 ATTTATTA-T-TAAT--AT * 37414994 ATTTATTATTAAAAT 1 ATTTATTATTAATAT 37415009 ATT 1 ATT 37415012 AATTTTGAAT Statistics Matches: 30, Mismatches: 3, Indels: 8 0.73 0.07 0.20 Matches are distributed among these distances: 15 12 0.40 16 1 0.03 17 7 0.23 18 1 0.03 19 9 0.30 ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54 Consensus pattern (15 bp): ATTTATTATTAATAT Found at i:37417073 original size:285 final size:286 Alignment explanation
Indices: 37416552--37417125 Score: 1141 Period size: 285 Copynumber: 2.0 Consensus size: 286 37416542 AAAATATTTA 37416552 AAAATAAAATAAAAGAAAAAATATAATTAATGTGATAAACTTGATTTGATAATTTACTTGCTTAA 1 AAAATAAAATAAAAGAAAAAATATAATTAATGTGATAAACTTGATTTGATAATTTACTTGCTTAA 37416617 GGCTTCAAATTTATCATTGAGGATCTTTTAAAAAATATATAATTTAGCATTTGTTTATATATTTT 66 GGCTTCAAATTTATCATTGAGGATCTTTTAAAAAATATATAATTTAGCATTTGTTTATATATTTT 37416682 TAAAATTTTTAGTAATTTTGAATTTTTTGAATATATATTTATAAAATTTTGGAAAGTATATTTTA 131 TAAAATTTTTAGTAATTTTGAATTTTTTGAATATATATTTATAAAATTTTGGAAAGTATATTTTA 37416747 TAAATATCTCAAAATTTTGACGAATAATTTGAATTTTCTGTAATTTTTTTGAGAGAAAAATTTAC 196 TAAATATCTCAAAATTTTGACGAATAATTTGAATTTTCTGTAATTTTTTTGAGAGAAAAATTTAC 37416812 ACATTTTTAAAACTGTTAGGAATCTG 261 ACATTTTTAAAACTGTTAGGAATCTG 37416838 AAAATAAAAT-AAAGAAAAAATATAATTAATGTGATAAACTTGATTTGATAATTTACTTGCTTAA 1 AAAATAAAATAAAAGAAAAAATATAATTAATGTGATAAACTTGATTTGATAATTTACTTGCTTAA 37416902 GGCTTCAAATTTATCATTGAGGATCTTTTAAAAAATATATAATTTAGCATTTGTTTATATATTTT 66 GGCTTCAAATTTATCATTGAGGATCTTTTAAAAAATATATAATTTAGCATTTGTTTATATATTTT 37416967 TAAAATTTTTAGTAATTTTGAATTTTTTGAATATATATTTATAAAATTTTGGAAAGTATATTTTA 131 TAAAATTTTTAGTAATTTTGAATTTTTTGAATATATATTTATAAAATTTTGGAAAGTATATTTTA 37417032 TAAATATCTCAAAATTTTGACGAATAATTTGAATTTTCTGTAATTTTTTTGAGAGAAAAATTTAC 196 TAAATATCTCAAAATTTTGACGAATAATTTGAATTTTCTGTAATTTTTTTGAGAGAAAAATTTAC 37417097 ACATTTTTAAAACTGTTAGGAATCTG 261 ACATTTTTAAAACTGTTAGGAATCTG 37417123 AAA 1 AAA 37417126 GAGTATTTAC Statistics Matches: 288, Mismatches: 0, Indels: 1 1.00 0.00 0.00 Matches are distributed among these distances: 285 278 0.97 286 10 0.03 ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44 Consensus pattern (286 bp): AAAATAAAATAAAAGAAAAAATATAATTAATGTGATAAACTTGATTTGATAATTTACTTGCTTAA GGCTTCAAATTTATCATTGAGGATCTTTTAAAAAATATATAATTTAGCATTTGTTTATATATTTT TAAAATTTTTAGTAATTTTGAATTTTTTGAATATATATTTATAAAATTTTGGAAAGTATATTTTA TAAATATCTCAAAATTTTGACGAATAATTTGAATTTTCTGTAATTTTTTTGAGAGAAAAATTTAC ACATTTTTAAAACTGTTAGGAATCTG Found at i:37423892 original size:33 final size:33 Alignment explanation
Indices: 37423810--37423892 Score: 87 Period size: 33 Copynumber: 2.5 Consensus size: 33 37423800 TGGCCTTGTC ** * * 37423810 ATGGTCTTACATTTGTAGTGCCATAACCCAGTT 1 ATGGTCTTACATTTAAAATGCCATAACCCAGCT * * * 37423843 ATGATCTTTTCA-TTAAAATGCCATAGCCCAGCT 1 ATGGTC-TTACATTTAAAATGCCATAACCCAGCT 37423876 ATGGTCTTACATTTAAA 1 ATGGTCTTACATTTAAA 37423893 CATTGTCATG Statistics Matches: 39, Mismatches: 9, Indels: 4 0.75 0.17 0.08 Matches are distributed among these distances: 32 4 0.10 33 31 0.79 34 4 0.10 ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36 Consensus pattern (33 bp): ATGGTCTTACATTTAAAATGCCATAACCCAGCT Found at i:37430580 original size:18 final size:17 Alignment explanation
Indices: 37430557--37430599 Score: 52 Period size: 16 Copynumber: 2.5 Consensus size: 17 37430547 GATTAAGGGT 37430557 AAAATTGGAAATGAAATA 1 AAAATTGGAAAT-AAATA * * 37430575 AAAATT-AAAATAGATA 1 AAAATTGGAAATAAATA 37430591 AAAATTGGA 1 AAAATTGGA 37430600 TTTAATGGTT Statistics Matches: 21, Mismatches: 3, Indels: 3 0.78 0.11 0.11 Matches are distributed among these distances: 16 10 0.48 17 5 0.24 18 6 0.29 ACGTcount: A:0.63, C:0.00, G:0.14, T:0.23 Consensus pattern (17 bp): AAAATTGGAAATAAATA Found at i:37431447 original size:23 final size:23 Alignment explanation
Indices: 37431417--37431529 Score: 136 Period size: 23 Copynumber: 4.7 Consensus size: 23 37431407 ATCATTCTTG 37431417 GTAAAGGATGAATTGACGAAAAT 1 GTAAAGGATGAATTGACGAAAAT * 37431440 GTAAAGGATGAATTAACGGAAAAT 1 GTAAAGGATGAATTGAC-GAAAAT * * * * 37431464 GTAAAAGAGGAACTAACGAAAAAATT 1 GTAAAGGATGAATTGACG--AAAA-T * 37431490 GTAAAGGATGAATTGACGGAAAT 1 GTAAAGGATGAATTGACGAAAAT 37431513 GTAAAGGATGAATTGAC 1 GTAAAGGATGAATTGAC 37431530 AGTAAATTTT Statistics Matches: 77, Mismatches: 9, Indels: 8 0.82 0.10 0.09 Matches are distributed among these distances: 23 35 0.45 24 23 0.30 25 4 0.05 26 15 0.19 ACGTcount: A:0.49, C:0.05, G:0.26, T:0.20 Consensus pattern (23 bp): GTAAAGGATGAATTGACGAAAAT Found at i:37431488 original size:25 final size:24 Alignment explanation
Indices: 37431435--37431486 Score: 68 Period size: 24 Copynumber: 2.2 Consensus size: 24 37431425 TGAATTGACG * * * * 37431435 AAAATGTAAAGGATGAATTAACGG 1 AAAATGTAAAAGAGGAACTAACGA 37431459 AAAATGTAAAAGAGGAACTAACGA 1 AAAATGTAAAAGAGGAACTAACGA 37431483 AAAA 1 AAAA 37431487 ATTGTAAAGG Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15 Consensus pattern (24 bp): AAAATGTAAAAGAGGAACTAACGA Found at i:37435759 original size:100 final size:101 Alignment explanation
Indices: 37435621--37435823 Score: 399 Period size: 100 Copynumber: 2.0 Consensus size: 101 37435611 TTTTATAAAA 37435621 TTATAATATTTTAATTTTACGATATATGTTTAAGAATATAATTATATATTATTTTATTAATCTCG 1 TTATAATATTTTAATTTTACGATATATGTTTAAGAATATAATTATATATTATTTTATTAATCTCG 37435686 TTTAAATAATTTTAAAAAATATTGATGAAAGATAAT 66 TTTAAATAATTTTAAAAAATATTGATGAAAGATAAT 37435722 TTATAATATTTT-ATTTTACGATATATGTTTAAGAATATAATTATATATTATTTTATTAATCTCG 1 TTATAATATTTTAATTTTACGATATATGTTTAAGAATATAATTATATATTATTTTATTAATCTCG 37435786 TTTAAATAATTTTAAAAAATATTGATGAAAGATAAT 66 TTTAAATAATTTTAAAAAATATTGATGAAAGATAAT 37435822 TT 1 TT 37435824 CTTATACATT Statistics Matches: 102, Mismatches: 0, Indels: 1 0.99 0.00 0.01 Matches are distributed among these distances: 100 90 0.88 101 12 0.12 ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48 Consensus pattern (101 bp): TTATAATATTTTAATTTTACGATATATGTTTAAGAATATAATTATATATTATTTTATTAATCTCG TTTAAATAATTTTAAAAAATATTGATGAAAGATAAT Found at i:37441530 original size:26 final size:26 Alignment explanation
Indices: 37441476--37441571 Score: 79 Period size: 26 Copynumber: 3.8 Consensus size: 26 37441466 AACCTCGTTA * * 37441476 ACAAATTTATTCA-TTTGTTTTGTAG 1 ACAAATTTATTCATTTTTTTTTGCAG * * 37441501 ACAATTTTATTCATTTTTTTTTGCAT 1 ACAAATTTATTCATTTTTTTTTGCAG * * * * * 37441527 ACAAGTTTACTCGTTTTTTTTTGTAC 1 ACAAATTTATTCATTTTTTTTTGCAG * * 37441553 A-AAATTTGTTCATTCTTTT 1 ACAAATTTATTCATTTTTTT 37441572 ATATACCTCA Statistics Matches: 56, Mismatches: 14, Indels: 2 0.78 0.19 0.03 Matches are distributed among these distances: 25 25 0.45 26 31 0.55 ACGTcount: A:0.24, C:0.11, G:0.08, T:0.56 Consensus pattern (26 bp): ACAAATTTATTCATTTTTTTTTGCAG Found at i:37441843 original size:23 final size:23 Alignment explanation
Indices: 37441794--37441837 Score: 63 Period size: 22 Copynumber: 2.0 Consensus size: 23 37441784 ACAAATTTTC * 37441794 ATTTTAATAAATTACCTTTAAAA 1 ATTTTAATAAATTACCATTAAAA * 37441817 ATTTTAA-AAATTATCATTAAA 1 ATTTTAATAAATTACCATTAAA 37441838 TTATTTATAT Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 22 12 0.63 23 7 0.37 ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43 Consensus pattern (23 bp): ATTTTAATAAATTACCATTAAAA Found at i:37444277 original size:24 final size:24 Alignment explanation
Indices: 37444250--37444296 Score: 94 Period size: 24 Copynumber: 2.0 Consensus size: 24 37444240 TGAACACACA 37444250 AATTTTACTATAATGGAAAAAGAT 1 AATTTTACTATAATGGAAAAAGAT 37444274 AATTTTACTATAATGGAAAAAGA 1 AATTTTACTATAATGGAAAAAGA 37444297 ATGAAGAGTA Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 23 1.00 ACGTcount: A:0.51, C:0.04, G:0.13, T:0.32 Consensus pattern (24 bp): AATTTTACTATAATGGAAAAAGAT Found at i:37449662 original size:44 final size:44 Alignment explanation
Indices: 37449599--37449747 Score: 158 Period size: 44 Copynumber: 3.4 Consensus size: 44 37449589 TCATTCCAAC * * * * 37449599 CCACTGCAATTTCAAAGGTATAGGATTTGTTGCTTCAATCTACT 1 CCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCAATCTGCT * * * * 37449643 CCACTACAACTTCAGAGGTATAGGGTTTGCCA-CTTCAATTTGCT 1 CCACTGCAACTTCAGAGGTATAGGATTTG-TAGCTTCAATCTGCT * ** * 37449687 CCACTGCAACTTCAGGAAG-ATAATATTAGTAGCTTCAATCTGCT 1 CCACTGCAACTTCA-GAGGTATAGGATTTGTAGCTTCAATCTGCT 37449731 CCACTGCAACTTCAGAG 1 CCACTGCAACTTCAGAG 37449748 AGATAAGATC Statistics Matches: 85, Mismatches: 17, Indels: 7 0.78 0.16 0.06 Matches are distributed among these distances: 43 3 0.04 44 79 0.93 45 3 0.04 ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31 Consensus pattern (44 bp): CCACTGCAACTTCAGAGGTATAGGATTTGTAGCTTCAATCTGCT Found at i:37449811 original size:75 final size:75 Alignment explanation
Indices: 37449686--37449831 Score: 204 Period size: 75 Copynumber: 1.9 Consensus size: 75 37449676 TTCAATTTGC * * 37449686 TCCACTGCAACTTCAGGAAGATAATATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGAGAGA 1 TCCACTGCAACTTCAGGAAGATAAGATTAGTAGCTTCAATATGCTCCACTGCAACTTCAGAGAGA 37449751 TAAGATCCGT 66 TAAGATCCGT * * * * * * 37449761 TCCACTGCAAGTTCAGG-GGAATAAGATTTGTATCTTCAATATGCTTCACTGCAACTTTAGAGAG 1 TCCACTGCAACTTCAGGAAG-ATAAGATTAGTAGCTTCAATATGCTCCACTGCAACTTCAGAGAG 37449825 ATAAGAT 65 ATAAGAT 37449832 TTGTAACTTG Statistics Matches: 62, Mismatches: 8, Indels: 2 0.86 0.11 0.03 Matches are distributed among these distances: 74 1 0.02 75 61 0.98 ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29 Consensus pattern (75 bp): TCCACTGCAACTTCAGGAAGATAAGATTAGTAGCTTCAATATGCTCCACTGCAACTTCAGAGAGA TAAGATCCGT Found at i:37449829 original size:44 final size:44 Alignment explanation
Indices: 37449763--37450338 Score: 420 Period size: 44 Copynumber: 12.7 Consensus size: 44 37449753 AGATCCGTTC * * * 37449763 CACTGCAAGTTCAG-GGGAATAAGATTTGTATCTTCAATATGCTT 1 CACTGCAACTTCAGAGAG-ATAAGATTTGTATCTTCAATCTGCTT * * * * 37449807 CACTGCAACTTTAGAGAGATAAGATTTGTAACTTGTAGCCTTAATCCGTTT 1 CACTGCAACTTCAGAGAGATAAGATTTGTATC-T-T---C--AATCTGCTT * * * * * 37449858 CACTGCAACTTTAG-GAAAATAAGATTCGTATCTTCAATCCGCTC 1 CACTGCAACTTCAGAG-AGATAAGATTTGTATCTTCAATCTGCTT * * * 37449902 CACTGCAACTTCAGAGAGTTAAGATTTCTATCTTGTAGCTTTAATTTG-TT 1 CACTGCAACTTCAGAGAGATAAGATTTGTATC-T-T--C---AATCTGCTT * * * 37449952 CCACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGATC 1 -CACTGCAACTTCAGAGAGATAAGATTTG-TATCTTCAATCTGCTT * * * 37449998 CACTGCAACTTCA-AGGAGATAAGATTCAT-TATCTTTAATTTGCTC 1 CACTGCAACTTCAGA-GAGATAAGATT--TGTATCTTCAATCTGCTT * * 37450043 CACTGCAAC-TCTAGGGAGATAAGATTTGTAGCTTCAATCTGC-T 1 CACTGCAACTTC-AGAGAGATAAGATTTGTATCTTCAATCTGCTT * * ** * * 37450086 CTACTGCAACTTCAGTGAGATACGATTCACTATATTCAATCTGCTC 1 C-ACTGCAACTTCAGAGAGATAAGATT-TGTATCTTCAATCTGCTT * * * 37450132 CACTGTAACTTCAGGGAGATAAGATTTGTGA-CTTTAATCTGC-T 1 CACTGCAACTTCAGAGAGATAAGATTTGT-ATCTTCAATCTGCTT * * 37450175 CTATTGCAACTTCAGAAAGATAAGATTTGCTATCTTCAATCTGC-T 1 C-ACTGCAACTTCAGAGAGATAAGATTTG-TATCTTCAATCTGCTT * ** * * 37450220 CAACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTACTT 1 C-ACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAATCTGCTT * * * 37450265 CACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTAC-T 1 CACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAATCTGCTT 37450308 CTACTGCAA-TGTCAGAGAGATAAGATTTGTA 1 C-ACTGCAACT-TCAGAGAGATAAGATTTGTA 37450339 ACTTGTAGCT Statistics Matches: 429, Mismatches: 66, Indels: 74 0.75 0.12 0.13 Matches are distributed among these distances: 43 6 0.01 44 199 0.46 45 143 0.33 46 5 0.01 47 1 0.00 48 2 0.00 49 2 0.00 50 4 0.01 51 63 0.15 52 4 0.01 ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34 Consensus pattern (44 bp): CACTGCAACTTCAGAGAGATAAGATTTGTATCTTCAATCTGCTT Found at i:37449865 original size:51 final size:51 Alignment explanation
Indices: 37449807--37449987 Score: 189 Period size: 51 Copynumber: 3.7 Consensus size: 51 37449797 CAATATGCTT * * 37449807 CACTGCAACTTTAGAGAGATAAGATTTGTAACTTGTAGCCTTAATCCGTTT 1 CACTGCAACTTTAGAGAGATAAGATTTGTATCTTGTAGCCTTAATCCGTTC * * * 37449858 CACTGCAACTTTAG-GAAAATAAGATTCGTATC-T-T---C--AATCCGCTC 1 CACTGCAACTTTAGAG-AGATAAGATTTGTATCTTGTAGCCTTAATCCGTTC * * * * ** 37449902 CACTGCAACTTCAGAGAGTTAAGATTTCTATCTTGTAGCTTTAATTTGTTC 1 CACTGCAACTTTAGAGAGATAAGATTTGTATCTTGTAGCCTTAATCCGTTC 37449953 CACTGCAACTTTAGAGAGATAAGATTTGCTATCTT 1 CACTGCAACTTTAGAGAGATAAGATTTG-TATCTT 37449988 CAATCTGATC Statistics Matches: 103, Mismatches: 17, Indels: 19 0.74 0.12 0.14 Matches are distributed among these distances: 44 32 0.31 45 2 0.02 46 2 0.02 49 1 0.01 50 2 0.02 51 58 0.56 52 6 0.06 ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35 Consensus pattern (51 bp): CACTGCAACTTTAGAGAGATAAGATTTGTATCTTGTAGCCTTAATCCGTTC Found at i:37450017 original size:45 final size:45 Alignment explanation
Indices: 37449761--37450477 Score: 389 Period size: 44 Copynumber: 15.7 Consensus size: 45 37449751 TAAGATCCGT * * * 37449761 TCCACTGCAAGTTC-AGGGGAATAAGATTTG-TATCTTCAATATGC 1 TCCACTGCAACTTCAAGGAG-ATAAGATTTGCTATCTTCAATCTGC * * * * * 37449805 TTCACTGCAACTT-TAGAGAGATAAGATTTG-TAACTTGTAGCCTTAATCCGT 1 TCCACTGCAACTTCAAG-GAGATAAGATTTGCTATC-T-T---C--AATCTGC * * * * * 37449856 TTCACTGCAACTT-TAGGAAAATAAGATTCG-TATCTTCAATCCGC 1 TCCACTGCAACTTCAAGG-AGATAAGATTTGCTATCTTCAATCTGC * * * 37449900 TCCACTGCAACTTC-AGAGAGTTAAGATTT-CTATCTTGTAGCTTTAATTTGT 1 TCCACTGCAACTTCAAG-GAGATAAGATTTGCTATC-T-T--C---AATCTGC * * 37449951 TCCACTGCAACTT-TAGAGAGATAAGATTTGCTATCTTCAATCTGA 1 TCCACTGCAACTTCAAG-GAGATAAGATTTGCTATCTTCAATCTGC *** * * 37449996 TCCACTGCAACTTCAAGGAGATAAGATTCATTATCTTTAATTTGC 1 TCCACTGCAACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGC * * 37450041 TCCACTGCAAC-TCTAGGGAGATAAGATTTG-TAGCTTCAATCTGC 1 TCCACTGCAACTTC-AAGGAGATAAGATTTGCTATCTTCAATCTGC * * ** * 37450085 TCTACTGCAACTTC-AGTGAGATACGATTCACTATATTCAATCTGC 1 TCCACTGCAACTTCAAG-GAGATAAGATTTGCTATCTTCAATCTGC * * * 37450130 TCCACTGTAACTTCAGGGAGATAAGATTTG-TGA-CTTTAATCTGC 1 TCCACTGCAACTTCAAGGAGATAAGATTTGCT-ATCTTCAATCTGC * * * 37450174 TCTATTGCAACTTC-AGAAAGATAAGATTTGCTATCTTCAATCTGC 1 TCCACTGCAACTTCAAG-GAGATAAGATTTGCTATCTTCAATCTGC * * ** * * 37450219 TCAACTGCAACTTCAGGGAGATAAGATTTG-TGGCTTTAATCTAC 1 TCCACTGCAACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGC * * * * 37450263 TTCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTAC 1 TCCACTGCAACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGC * * * * * 37450307 TCTACTGCAA-TGTC-AGAGAGATAAGATTTGTAACTTGTAGCTTTAATTTGT 1 TCCACTGCAACT-TCAAG-GAGATAAGATTTG---C---TATCTTCAATCTGC * * * * * * 37450358 TCCACTGTAACTTTAGGGTA-ATAGGATTTGCTATTTTCAATATGC 1 TCCACTGCAACTTCAAGG-AGATAAGATTTGCTATCTTCAATCTGC ** * ** 37450403 TCCACTGCAACTTC-AGGAAGATAAGATTTG-TGGCTTTAATCTAT 1 TCCACTGCAACTTCAAGG-AGATAAGATTTGCTATCTTCAATCTGC * * * * 37450447 TCAATTGCAACTTTAGGGAGATAAGATTTGC 1 TCCACTGCAACTTCAAGGAGATAAGATTTGC 37450478 CACGATGACT Statistics Matches: 523, Mismatches: 102, Indels: 95 0.73 0.14 0.13 Matches are distributed among these distances: 43 4 0.01 44 230 0.44 45 173 0.33 46 7 0.01 48 3 0.01 49 2 0.00 50 3 0.01 51 93 0.18 52 8 0.02 ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35 Consensus pattern (45 bp): TCCACTGCAACTTCAAGGAGATAAGATTTGCTATCTTCAATCTGC Found at i:37450124 original size:134 final size:133 Alignment explanation
Indices: 37449934--37450338 Score: 386 Period size: 134 Copynumber: 3.0 Consensus size: 133 37449924 GATTTCTATC * * * * * ** * 37449934 TTGTAGCTTTAATTTGTTCCACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGATCC 1 TTGTAGCTTCAATCTGCTCAACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCC * * ** 37449999 ACTGCAACTTCAAGGAGATAAGATTCATTATCTTTAATTTGCTCCACTGCAAC-TCTAGGGAGAT 66 ACTGCAACTTCAAGGAGATAAGATTCATGA-CTTTAATCTGCTCCACTGCAACTTC-AGAAAGAT 37450063 AAGAT 129 AAGAT * * * * 37450068 TTGTAGCTTCAATCTGCTCTACTGCAACTTCAGTGAGATACGATTCACTATATTCAATCTGCTCC 1 TTGTAGCTTCAATCTGCTCAACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCC * * ** * * 37450133 ACTGTAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCTATTGCAACTTCAGAAAGATAA 66 ACTGCAACTTCAAGGAGATAAGATTCATGACTTTAATCTGCTCCACTGCAACTTCAGAAAGATAA 37450198 GAT 131 GAT * * ** *** * 37450201 TTGCTATCTTCAATCTGCTCAACTGCAACTTCAGGGAGATAAGATT-TGTGGCTTTAATCT-ACT 1 TTG-TAGCTTCAATCTGCTCAACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGA-T * * ** * * * * * 37450264 TCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTACTCTACTGCAA-TGTCAGAGAGA 64 CCACTGCAACTTCAAGGAGATAAGATTCATGACTTTAATCTGCTCCACTGCAACT-TCAGAAAGA 37450328 TAAGAT 128 TAAGAT 37450334 TTGTA 1 TTGTA 37450339 ACTTGTAGCT Statistics Matches: 228, Mismatches: 39, Indels: 10 0.82 0.14 0.04 Matches are distributed among these distances: 132 3 0.01 133 106 0.46 134 119 0.52 ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34 Consensus pattern (133 bp): TTGTAGCTTCAATCTGCTCAACTGCAACTTCAGAGAGATAAGATTCACTATATTCAATCTGATCC ACTGCAACTTCAAGGAGATAAGATTCATGACTTTAATCTGCTCCACTGCAACTTCAGAAAGATAA GAT Found at i:37450131 original size:89 final size:89 Alignment explanation
Indices: 37449761--37450474 Score: 451 Period size: 89 Copynumber: 7.8 Consensus size: 89 37449751 TAAGATCCGT * * * * 37449761 TCCACTGCAAGTTCAGGG-GAATAAGATTTGTATCTTCAATATGCT-TCACTGCAACTTTAGAGA 1 TCCACTGCAACTTCAGGGAG-ATAAGATTTGTAGCTTCAATCTGCTCT-ACTGCAACTTCAGAGA * * * * 37449824 GATAAGATTTGTAACTTGTAGCCTT-AATCCGT 64 GATAAGA--T-TCAC-TATA---TTCAATCTGC * * * * * * * * * 37449856 TTCACTGCAACTTTAGGAAAATAAGATTCGTATCTTCAATCCGCTCCACTGCAACTTCAGAGAGT 1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGA * * * * 37449921 TAAGATTTCTATCTTGTAGCTTTAATTTGT 66 TAAGA-TTC-A-C-TATA--TTCAATCTGC * * * * * 37449951 TCCACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCTGATCCACTGCAACTTCA-AGGA 1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCTACTGCAACTTCAGA-GA * * * * 37450015 GATAAGATTCATTATCTTTAATTTGC 64 GATAAGATTCACTATATTCAATCTGC * 37450041 TCCACTGCAAC-TCTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGTGAG 1 TCCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAG * 37450105 ATACGATTCACTATATTCAATCTGC 65 ATAAGATTCACTATATTCAATCTGC * * * * 37450130 TCCACTGTAACTTCAGGGAGATAAGATTTGT-GACTTTAATCTGCTCTATTGCAACTTCAGAAAG 1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAG-CTTCAATCTGCTCTACTGCAACTTCAGAGAG ** * 37450194 ATAAGATTTGCTATCTTCAATCTGC 65 ATAAGATTCACTATATTCAATCTGC * * * * * 37450219 TCAACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTACT-TCACTGCAACTTCAGGGAG 1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCT-ACTGCAACTTCAGAGAG ** * 37450283 ATAAGATT-TGTA-ACTTCAATCTAC 65 ATAAGATTCACTATA-TTCAATCTGC * * * * * * * 37450307 TCTACTGCAA-TGTCAGAGAGATAAGATTTGTAACTTGTAGCTTTAATTTGTTCCACTGTAACTT 1 TCCACTGCAACT-TCAGGGAGATAAGA----T---TTGTAGCTTCAATCTGCTCTACTGCAACTT * * * ** * * 37450371 TAGGGTA-ATAGGATTTGCTATTTTCAATATGC 58 CAGAG-AGATAAGATTCACTATATTCAATCTGC * * * ** * * * * 37450403 TCCACTGCAACTTCAGGAAGATAAGATTTGTGGCTTTAATCTATTCAATTGCAACTTTAGGGAGA 1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGA 37450468 TAAGATT 66 TAAGATT 37450475 TGCCACGATG Statistics Matches: 509, Mismatches: 82, Indels: 62 0.78 0.13 0.09 Matches are distributed among these distances: 87 1 0.00 88 36 0.07 89 223 0.44 90 38 0.07 92 4 0.01 93 1 0.00 94 7 0.01 95 131 0.26 96 67 0.13 97 1 0.00 ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35 Consensus pattern (89 bp): TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAGAGA TAAGATTCACTATATTCAATCTGC Found at i:37450418 original size:184 final size:178 Alignment explanation
Indices: 37449951--37450476 Score: 530 Period size: 184 Copynumber: 2.9 Consensus size: 178 37449941 TTTAATTTGT * * * * 37449951 TCCACTGCAACTTTAGAGAGATAAGATTTGCT-ATCTTCAATCTGATCCACTGCAACTTCA-AGG 1 TCCACTGCAACTTCAGAGAGATAAGATTTG-TGA-CTTTAATCTGCTCCACTGCAACTTCAGA-A *** * * * * 37450014 AGATAAGATTCATTATCTTTAATTTGCTCCACTGCAAC-TCTAGGGAGATAAGATTTGTAGCTTC 63 AGATAAGATTTGCTATCTTCAATATGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTGGCTTT * * * * ** * 37450078 AATCTGC-TCTACTGCAACTTCAGTGAGATACGATTCACTATATTCAATCTGC 127 AATCTACTTCAACTGCAACTTCAGGGAGATAAGATT-TGTATATTCAATCTAC * * * * 37450130 TCCACTGTAACTTCAGGGAGATAAGATTTGTGACTTTAATCTGCTCTATTGCAACTTCAGAAAGA 1 TCCACTGCAACTTCAGAGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCAGAAAGA * * 37450195 TAAGATTTGCTATCTTCAATCTGCTCAACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATC 66 TAAGATTTGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATC 37450260 TACTTC-ACTGCAACTTCAGGGAGATAAGATTTGTA-ACTTCAATCTAC 131 TACTTCAACTGCAACTTCAGGGAGATAAGATTTGTATA-TTCAATCTAC * * * * 37450307 TCTACTGCAA-TGTCAGAGAGATAAGATTTGTAACTTGTAGCTTTAATTTGTTCCACTGTAACTT 1 TCCACTGCAACT-TCAGAGAGATAAGATTTG-----TG-A-CTTTAATCTGCTCCACTGCAACTT * ** * * * 37450371 TAGGGTA-ATAGGATTTGCTATTTTCAATATGCTCCACTGCAACTTCAGGAAGATAAGATTTGTG 58 CA-GAAAGATAAGATTTGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTG * * 37450435 GCTTTAATCTA-TTCAATTGCAACTTTAGGGAGATAAGATTTG 122 GCTTTAATCTACTTCAACTGCAACTTCAGGGAGATAAGATTTG 37450477 CCACGATGAC Statistics Matches: 292, Mismatches: 40, Indels: 25 0.82 0.11 0.07 Matches are distributed among these distances: 176 2 0.01 177 36 0.12 178 105 0.36 179 33 0.11 182 2 0.01 183 4 0.01 184 108 0.37 185 2 0.01 ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34 Consensus pattern (178 bp): TCCACTGCAACTTCAGAGAGATAAGATTTGTGACTTTAATCTGCTCCACTGCAACTTCAGAAAGA TAAGATTTGCTATCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATC TACTTCAACTGCAACTTCAGGGAGATAAGATTTGTATATTCAATCTAC Found at i:37451792 original size:15 final size:15 Alignment explanation
Indices: 37451772--37451801 Score: 60 Period size: 15 Copynumber: 2.0 Consensus size: 15 37451762 AGCAGAAAGT 37451772 GATATCATCAAACTC 1 GATATCATCAAACTC 37451787 GATATCATCAAACTC 1 GATATCATCAAACTC 37451802 CTCAATTAAC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27 Consensus pattern (15 bp): GATATCATCAAACTC Found at i:37456357 original size:49 final size:49 Alignment explanation
Indices: 37456297--37456431 Score: 207 Period size: 49 Copynumber: 2.8 Consensus size: 49 37456287 AAGTTATATG * * * * 37456297 TGATTCCGTGTAAGACCATAGCTGGGCTATGGCATTGGTATATGTTATA 1 TGATTACGTGTAAGACCATAGATGGGCTATGACATCGGTATATGTTATA * 37456346 TGATTACGTGTAAGACCATAGATGGGCTATGACATCGGTATATGTTATG 1 TGATTACGTGTAAGACCATAGATGGGCTATGACATCGGTATATGTTATA * * 37456395 TGATTACGTGTAAGACCATAGTTGGACTATGACATCG 1 TGATTACGTGTAAGACCATAGATGGGCTATGACATCG 37456432 AGAAAATAAG Statistics Matches: 79, Mismatches: 7, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 49 79 1.00 ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33 Consensus pattern (49 bp): TGATTACGTGTAAGACCATAGATGGGCTATGACATCGGTATATGTTATA Found at i:37462669 original size:11 final size:11 Alignment explanation
Indices: 37462653--37462677 Score: 50 Period size: 11 Copynumber: 2.3 Consensus size: 11 37462643 TAATAGATTC 37462653 AAAGAAAAATA 1 AAAGAAAAATA 37462664 AAAGAAAAATA 1 AAAGAAAAATA 37462675 AAA 1 AAA 37462678 AAGGATCACC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 14 1.00 ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08 Consensus pattern (11 bp): AAAGAAAAATA Found at i:37465594 original size:2 final size:2 Alignment explanation
Indices: 37465549--37465581 Score: 66 Period size: 2 Copynumber: 16.5 Consensus size: 2 37465539 TAACTGCATG 37465549 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 37465582 ATGTGTGTAT Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:37474802 original size:31 final size:31 Alignment explanation
Indices: 37474743--37474802 Score: 75 Period size: 31 Copynumber: 1.9 Consensus size: 31 37474733 ACATTCCAAT * * * 37474743 GACTTAGATAAAAACTTTTAAATGGTTTAAC 1 GACTTAAATAAAAACTTTCAAATAGTTTAAC * * 37474774 GACTTAAATGAAAACTTTCGAATAGTTTA 1 GACTTAAATAAAAACTTTCAAATAGTTTA 37474803 GTGACCGTTT Statistics Matches: 24, Mismatches: 5, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 31 24 1.00 ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35 Consensus pattern (31 bp): GACTTAAATAAAAACTTTCAAATAGTTTAAC Found at i:37483594 original size:69 final size:71 Alignment explanation
Indices: 37483458--37483594 Score: 167 Period size: 69 Copynumber: 2.0 Consensus size: 71 37483448 TTGGTCCTTT * * * 37483458 ATTTCATTTTTTACAATTTAGGCCTCCTAATTTCCATTTAAATTTCGATTTACTCCTTTTTATAT 1 ATTTCATTTTTTACAATTTAGGCCTCCTAATTTCCATTTAAATTTCGATTTAATCATTTTTACAT 37483523 TTATTC 66 TTATTC * * 37483529 ATTT-ATTTTGTTATAATTTAGG-CT-CTCAATTT-CATTTTAATTTCGATTTAATCATTTATT- 1 ATTTCATTTT-TTACAATTTAGGCCTCCT-AATTTCCATTTAAATTTCGATTTAATCATTT-TTA 37483589 CATTTA 63 CATTTA 37483595 ATTTCAACCT Statistics Matches: 58, Mismatches: 5, Indels: 8 0.82 0.07 0.11 Matches are distributed among these distances: 69 29 0.50 70 14 0.24 71 15 0.26 ACGTcount: A:0.26, C:0.15, G:0.05, T:0.55 Consensus pattern (71 bp): ATTTCATTTTTTACAATTTAGGCCTCCTAATTTCCATTTAAATTTCGATTTAATCATTTTTACAT TTATTC Found at i:37487551 original size:19 final size:19 Alignment explanation
Indices: 37487515--37487567 Score: 65 Period size: 19 Copynumber: 2.8 Consensus size: 19 37487505 TGCCTCTTTT 37487515 TGCATT-CATTTCATTCATCA 1 TGCATTACATTTCA-TCAT-A 37487535 -GCATTACATTTCATCATA 1 TGCATTACATTTCATCATA * 37487553 TGCATTAAATTTCAT 1 TGCATTACATTTCAT 37487568 AAGAAGACCT Statistics Matches: 30, Mismatches: 1, Indels: 5 0.83 0.03 0.14 Matches are distributed among these distances: 18 1 0.03 19 22 0.73 20 7 0.23 ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43 Consensus pattern (19 bp): TGCATTACATTTCATCATA Found at i:37493831 original size:10 final size:10 Alignment explanation
Indices: 37493813--37493846 Score: 50 Period size: 10 Copynumber: 3.4 Consensus size: 10 37493803 AATTAAAATG 37493813 AGCTCAAACA 1 AGCTCAAACA * * 37493823 AGCTGAAACG 1 AGCTCAAACA 37493833 AGCTCAAACA 1 AGCTCAAACA 37493843 AGCT 1 AGCT 37493847 TATTTGAGCT Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 10 20 1.00 ACGTcount: A:0.44, C:0.26, G:0.18, T:0.12 Consensus pattern (10 bp): AGCTCAAACA Found at i:37493856 original size:20 final size:20 Alignment explanation
Indices: 37493808--37493846 Score: 69 Period size: 20 Copynumber: 1.9 Consensus size: 20 37493798 GAATAAATTA 37493808 AAATGAGCTCAAACAAGCTG 1 AAATGAGCTCAAACAAGCTG * 37493828 AAACGAGCTCAAACAAGCT 1 AAATGAGCTCAAACAAGCT 37493847 TATTTGAGCT Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 18 1.00 ACGTcount: A:0.46, C:0.23, G:0.18, T:0.13 Consensus pattern (20 bp): AAATGAGCTCAAACAAGCTG Found at i:37497178 original size:44 final size:45 Alignment explanation
Indices: 37497107--37497758 Score: 356 Period size: 44 Copynumber: 14.6 Consensus size: 45 37497097 TTGAATATAG * 37497107 CAAATCTTATCTCCCTGAAGATGCAGTGGAGCAAGA-TGAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * * * * * 37497151 CAAATCTCATATCCCTAAAGTTACAGTGGATCGA-ATTAAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * 37497195 CAAATGTTATCTCCCTGAAGTTGCAGTGGAG-AATATTGGAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * * * ** 37497239 CAAATATTATTTCTCTGAAGTTGTAATGGA-TTAGATTGAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * 37497283 CAAATCTTATTTCCCTGAAGTTGGAGTGGAGC-AGATTGAAGATA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * * * 37497327 GTAAACCTTATCCCCCTGAAGTTGCAGTGGAGC-AGATTAAAGATA 1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * 37497372 GCAAATCTTATCTCCCT-AGAGTTGTAGAT-GAG-TAGATTGAAGCTA 1 -CAAATCTTATCTCCCTGA-AGTTGCAG-TGGAGCAAGATTGAAGCTA * * * * 37497417 CAAATCTTATCTCCCTAAAGTTGCAGTGGA-AAAAATTAAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * *** * * 37497461 CAAGTCTTATTTTATTGAAATTGCAGTGGAGCAA-ATT-AAGGCCA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-GCTA * ** * * * 37497505 CGAATCTTATCTCTTTAAAGTTGCAGTAGAGCAA-ATTAAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * * * * * * * ** 37497549 CTAGTCTTATTTCCTTAAAATTACAGAGGGGCAA-ATT-AAGACCG 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAG-CTA ** * * * * 37497593 CAAATCTTATCTCTTTGAAGTTGTAGTAGAGC-AGATTAAAACTACAAACTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGA-T-----T-GAAGCTA * * * * 37497644 CAAATCTTATCTCCCTGAAGTTGCAGTAGAAC-ATATTAAAGCTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA * * * * * 37497688 CAAGTCTTATCTCTCT-AGAGTTGTAGTGGAG-TAGATTGAAACTA 1 CAAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAAGATTGAAGCTA * * 37497732 -AAATTCCTATAC-CTCTGAAGTTGCAGT 1 CAAA-TCTTAT-CTCCCTGAAGTTGCAGT 37497759 AGGTTAGAAT Statistics Matches: 471, Mismatches: 108, Indels: 58 0.74 0.17 0.09 Matches are distributed among these distances: 43 12 0.03 44 342 0.73 45 81 0.17 46 1 0.00 50 2 0.00 51 31 0.07 52 2 0.00 ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30 Consensus pattern (45 bp): CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAGCTA Found at i:37497672 original size:51 final size:51 Alignment explanation
Indices: 37497593--37497690 Score: 142 Period size: 51 Copynumber: 1.9 Consensus size: 51 37497583 ATTAAGACCG ** * * 37497593 CAAATCTTATCTCTTTGAAGTTGTAGTAGAGCAGATTAAAACTACAAACTA 1 CAAATCTTATCTCCCTGAAGTTGCAGTAGAACAGATTAAAACTACAAACTA * * 37497644 CAAATCTTATCTCCCTGAAGTTGCAGTAGAACATATTAAAGCTACAA 1 CAAATCTTATCTCCCTGAAGTTGCAGTAGAACAGATTAAAACTACAA 37497691 GTCTTATCTC Statistics Matches: 41, Mismatches: 6, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 51 41 1.00 ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30 Consensus pattern (51 bp): CAAATCTTATCTCCCTGAAGTTGCAGTAGAACAGATTAAAACTACAAACTA Found at i:37515533 original size:29 final size:30 Alignment explanation
Indices: 37515501--37515589 Score: 99 Period size: 31 Copynumber: 3.0 Consensus size: 30 37515491 TTGATTTAAT * 37515501 GTGCAATTGTATACATG-AACTGTAATTTG 1 GTGCAATTGTATACATGAAACTCTAATTTG * * 37515530 GTGCAATTATACACATGAAACTCTAATTTTG 1 GTGCAATTGTATACATGAAACTCTAA-TTTG * * * * 37515561 GTTCAAATGTATACTTGAAACTTTAATTT 1 GTGCAATTGTATACATGAAACTCTAATTT 37515590 TAATTTAGTC Statistics Matches: 49, Mismatches: 9, Indels: 3 0.80 0.15 0.05 Matches are distributed among these distances: 29 15 0.31 30 10 0.20 31 24 0.49 ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39 Consensus pattern (30 bp): GTGCAATTGTATACATGAAACTCTAATTTG Found at i:37515776 original size:29 final size:30 Alignment explanation
Indices: 37515733--37515813 Score: 101 Period size: 29 Copynumber: 2.7 Consensus size: 30 37515723 CAATTGGGTC * 37515733 AAATCAAAATTTCATGTATAAAATTGCACA- 1 AAATC-AAAGTTCATGTATAAAATTGCACAT * 37515763 AAATCAAAGTTCATGTATACAATTGCACATT 1 AAATCAAAGTTCATGTATAAAATTGCACA-T * * 37515794 AATTCATAGTTCATGTATAA 1 AAATCAAAGTTCATGTATAA 37515814 TTTTGATATT Statistics Matches: 44, Mismatches: 5, Indels: 3 0.85 0.10 0.06 Matches are distributed among these distances: 29 22 0.50 30 5 0.11 31 17 0.39 ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33 Consensus pattern (30 bp): AAATCAAAGTTCATGTATAAAATTGCACAT Found at i:37521253 original size:6 final size:7 Alignment explanation
Indices: 37521226--37521250 Score: 50 Period size: 7 Copynumber: 3.6 Consensus size: 7 37521216 AAAAAAATGT 37521226 AAAAAGA 1 AAAAAGA 37521233 AAAAAGA 1 AAAAAGA 37521240 AAAAAGA 1 AAAAAGA 37521247 AAAA 1 AAAA 37521251 GAAGAGAAGC Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (7 bp): AAAAAGA Found at i:37522043 original size:16 final size:18 Alignment explanation
Indices: 37522009--37522047 Score: 55 Period size: 16 Copynumber: 2.3 Consensus size: 18 37521999 CGTATAATAA * 37522009 TAAATTTAATTTTTCGTT 1 TAAATTTAATTTTTAGTT 37522027 TAAATTT-A-TTTTAGTT 1 TAAATTTAATTTTTAGTT 37522043 TAAAT 1 TAAAT 37522048 CAAGATAATT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 16 12 0.60 17 1 0.05 18 7 0.35 ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59 Consensus pattern (18 bp): TAAATTTAATTTTTAGTT Found at i:37522155 original size:24 final size:23 Alignment explanation
Indices: 37522127--37522178 Score: 68 Period size: 24 Copynumber: 2.2 Consensus size: 23 37522117 TATGCATTTT 37522127 TTATAATTACCTTTGTAATTGTAA 1 TTATAATTACCTTTGTAATT-TAA * * 37522151 TTATAATTGCGTTTGTAATTTAA 1 TTATAATTACCTTTGTAATTTAA * 37522174 ATATA 1 TTATA 37522179 TATCAAATTA Statistics Matches: 25, Mismatches: 3, Indels: 1 0.86 0.10 0.03 Matches are distributed among these distances: 23 7 0.28 24 18 0.72 ACGTcount: A:0.35, C:0.06, G:0.10, T:0.50 Consensus pattern (23 bp): TTATAATTACCTTTGTAATTTAA Found at i:37522433 original size:18 final size:17 Alignment explanation
Indices: 37522410--37522444 Score: 52 Period size: 18 Copynumber: 2.0 Consensus size: 17 37522400 AATAAAATAA * 37522410 AATATAAATTTATAAATT 1 AATATAAAATTA-AAATT 37522428 AATATAAAATTAAAATT 1 AATATAAAATTAAAATT 37522445 TCTTTTGGTG Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 5 0.31 18 11 0.69 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (17 bp): AATATAAAATTAAAATT Found at i:37536982 original size:9 final size:9 Alignment explanation
Indices: 37536959--37536988 Score: 53 Period size: 9 Copynumber: 3.4 Consensus size: 9 37536949 ATTTCTATTT 37536959 TATTAAAAA 1 TATTAAAAA 37536968 TA-TAAAAA 1 TATTAAAAA 37536976 TATTAAAAA 1 TATTAAAAA 37536985 TATT 1 TATT 37536989 GTCTTATTAA Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 8 8 0.40 9 12 0.60 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (9 bp): TATTAAAAA Found at i:37537052 original size:55 final size:55 Alignment explanation
Indices: 37536953--37537075 Score: 151 Period size: 55 Copynumber: 2.2 Consensus size: 55 37536943 TGCATTATTT **** 37536953 CTATTTTATTAAAAATATAAAAATATTAAAAATATTGTCTTATTAAAAAGAACTC 1 CTATTTTATTAAAAATATAAAAATATTAAAAATATTAAAATATTAAAAAGAACTC * * 37537008 CTATTTTATTAAAAATAT-AAAATA-TAAATTACTATTAAAATATTAAAAAGAACTT 1 CTATTTTATTAAAAATATAAAAATATTAAA--AATATTAAAATATTAAAAAGAACTC * 37537063 TTATTTTATTAAA 1 CTATTTTATTAAA 37537076 TGAAATAATA Statistics Matches: 59, Mismatches: 7, Indels: 4 0.84 0.10 0.06 Matches are distributed among these distances: 53 4 0.07 54 6 0.10 55 49 0.83 ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41 Consensus pattern (55 bp): CTATTTTATTAAAAATATAAAAATATTAAAAATATTAAAATATTAAAAAGAACTC Found at i:37537112 original size:93 final size:93 Alignment explanation
Indices: 37537015--37537208 Score: 316 Period size: 93 Copynumber: 2.1 Consensus size: 93 37537005 CTCCTATTTT * * 37537015 ATTAAAAATATAAAATATAAATTACTATTAAAATATTAAAAAGAACTTTTATTTTATTAAATGAA 1 ATTAAAAATATAAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA * * 37537080 ATAATATAAAAATAGTGTGTACAAATAA 66 ACAATATAAAAACAGTGTGTACAAATAA * 37537108 ATTAAAAATATAAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATTAA 1 ATTAAAAATATAAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA * * * 37537173 ACAATATAAAAACATTTTGTACAAATAT 66 ACAATATAAAAACAGTGTGTACAAATAA 37537201 ATTAAAAA 1 ATTAAAAA 37537209 ATATCAATGT Statistics Matches: 93, Mismatches: 8, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 93 93 1.00 ACGTcount: A:0.57, C:0.05, G:0.03, T:0.36 Consensus pattern (93 bp): ATTAAAAATATAAAAAATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGAA ACAATATAAAAACAGTGTGTACAAATAA Found at i:37537611 original size:18 final size:18 Alignment explanation
Indices: 37537571--37537614 Score: 70 Period size: 18 Copynumber: 2.4 Consensus size: 18 37537561 GGACTGGGAA * 37537571 AAGGATACATATAAGGGT 1 AAGGATACATATAAGGGC * 37537589 TAGGATACATATAAGGGC 1 AAGGATACATATAAGGGC 37537607 AAGGATAC 1 AAGGATAC 37537615 GCACCTGGCA Statistics Matches: 23, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 23 1.00 ACGTcount: A:0.43, C:0.09, G:0.27, T:0.20 Consensus pattern (18 bp): AAGGATACATATAAGGGC Found at i:37540339 original size:15 final size:16 Alignment explanation
Indices: 37540316--37540349 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 16 37540306 TTTTACTTAT 37540316 ATAATTTTAATATAAA 1 ATAATTTTAATATAAA * 37540332 ATAA-TTTAATATTAA 1 ATAATTTTAATATAAA 37540347 ATA 1 ATA 37540350 TAATACGGTG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 15 13 0.76 16 4 0.24 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (16 bp): ATAATTTTAATATAAA Found at i:37541762 original size:14 final size:14 Alignment explanation
Indices: 37541739--37541769 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 37541729 TTTTGCGTTC * 37541739 TTAGTTAATTTAGA 1 TTAGTAAATTTAGA 37541753 TTAGTAAATTTAGA 1 TTAGTAAATTTAGA 37541767 TTA 1 TTA 37541770 AAAACAATCA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48 Consensus pattern (14 bp): TTAGTAAATTTAGA Found at i:37546046 original size:15 final size:14 Alignment explanation
Indices: 37545997--37546037 Score: 55 Period size: 15 Copynumber: 2.8 Consensus size: 14 37545987 AGCATTCTCG 37545997 TTATTTTCTATTTTA 1 TTATTTT-TATTTTA * 37546012 TTATTGTTATTATTA 1 TTATTTTTATT-TTA 37546027 TTATTTTTATT 1 TTATTTTTATT 37546038 CTTTTTATTA Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 14 4 0.17 15 19 0.83 ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73 Consensus pattern (14 bp): TTATTTTTATTTTA Found at i:37547649 original size:4 final size:5 Alignment explanation
Indices: 37547627--37547665 Score: 53 Period size: 5 Copynumber: 7.6 Consensus size: 5 37547617 ATTGAGTCCA 37547627 TTTAT TTTAT TTTAT TTTA- TTTAT GTTTAT TGTTAT TTT 1 TTTAT TTTAT TTTAT TTTAT TTTAT -TTTAT T-TTAT TTT 37547666 CTTAGACTTA Statistics Matches: 31, Mismatches: 0, Indels: 6 0.84 0.00 0.16 Matches are distributed among these distances: 4 4 0.13 5 17 0.55 6 10 0.32 ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77 Consensus pattern (5 bp): TTTAT Found at i:37553236 original size:14 final size:14 Alignment explanation
Indices: 37553213--37553247 Score: 54 Period size: 14 Copynumber: 2.6 Consensus size: 14 37553203 GGATTATTGA 37553213 AATT-TTTTAAAAC 1 AATTATTTTAAAAC 37553226 AATTATTTTAAAAC 1 AATTATTTTAAAAC * 37553240 ATTTATTT 1 AATTATTT 37553248 AGTTTAGTAG Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 13 4 0.20 14 16 0.80 ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51 Consensus pattern (14 bp): AATTATTTTAAAAC Found at i:37555349 original size:403 final size:403 Alignment explanation
Indices: 37554602--37555407 Score: 1612 Period size: 403 Copynumber: 2.0 Consensus size: 403 37554592 ATAGTTTGAA 37554602 ACCTTTTAAGGGACTAATCTGATCAAAACATAAAATTTTAGGTCAAAACTATAAATTCTGAGTTA 1 ACCTTTTAAGGGACTAATCTGATCAAAACATAAAATTTTAGGTCAAAACTATAAATTCTGAGTTA 37554667 CAAGGACACATGGCCGTGTAACCTTGTGAGAAATTGTAGTCATGTGGCATTCGAAACTACAACCT 66 CAAGGACACATGGCCGTGTAACCTTGTGAGAAATTGTAGTCATGTGGCATTCGAAACTACAACCT 37554732 ATAGAGGTGACACGGCCGTGTGGCAGGCAGTGTGAGAAGAAAAAACCTAGAGTTTATGGAGGGAC 131 ATAGAGGTGACACGGCCGTGTGGCAGGCAGTGTGAGAAGAAAAAACCTAGAGTTTATGGAGGGAC 37554797 ATGACCGTGTATGGTAGTCGTGTTGTCCACACGGGTGGCCCACACACTCGTGTGGCTAACCGTGT 196 ATGACCGTGTATGGTAGTCGTGTTGTCCACACGGGTGGCCCACACACTCGTGTGGCTAACCGTGT 37554862 GGTCTGACCTAGGCTCAATTTTGCCTCGATTTTCTCATAAAATAACACACACCTGACTTCTGGGA 261 GGTCTGACCTAGGCTCAATTTTGCCTCGATTTTCTCATAAAATAACACACACCTGACTTCTGGGA 37554927 TCCTGAACATCGTTCCTTGTGCCTAGATCTGATATGGGGTAGTTGGAATGGTTCCTTCAAATAAT 326 TCCTGAACATCGTTCCTTGTGCCTAGATCTGATATGGGGTAGTTGGAATGGTTCCTTCAAATAAT 37554992 AATTTTCAAGATT 391 AATTTTCAAGATT 37555005 ACCTTTTAAGGGACTAATCTGATCAAAACATAAAATTTTAGGTCAAAACTATAAATTCTGAGTTA 1 ACCTTTTAAGGGACTAATCTGATCAAAACATAAAATTTTAGGTCAAAACTATAAATTCTGAGTTA 37555070 CAAGGACACATGGCCGTGTAACCTTGTGAGAAATTGTAGTCATGTGGCATTCGAAACTACAACCT 66 CAAGGACACATGGCCGTGTAACCTTGTGAGAAATTGTAGTCATGTGGCATTCGAAACTACAACCT 37555135 ATAGAGGTGACACGGCCGTGTGGCAGGCAGTGTGAGAAGAAAAAACCTAGAGTTTATGGAGGGAC 131 ATAGAGGTGACACGGCCGTGTGGCAGGCAGTGTGAGAAGAAAAAACCTAGAGTTTATGGAGGGAC 37555200 ATGACCGTGTATGGTAGTCGTGTTGTCCACACGGGTGGCCCACACACTCGTGTGGCTAACCGTGT 196 ATGACCGTGTATGGTAGTCGTGTTGTCCACACGGGTGGCCCACACACTCGTGTGGCTAACCGTGT 37555265 GGTCTGACCTAGGCTCAATTTTGCCTCGATTTTCTCATAAAATAACACACACCTGACTTCTGGGA 261 GGTCTGACCTAGGCTCAATTTTGCCTCGATTTTCTCATAAAATAACACACACCTGACTTCTGGGA 37555330 TCCTGAACATCGTTCCTTGTGCCTAGATCTGATATGGGGTAGTTGGAATGGTTCCTTCAAATAAT 326 TCCTGAACATCGTTCCTTGTGCCTAGATCTGATATGGGGTAGTTGGAATGGTTCCTTCAAATAAT 37555395 AATTTTCAAGATT 391 AATTTTCAAGATT 37555408 TCTCAAAATT Statistics Matches: 403, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 403 403 1.00 ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28 Consensus pattern (403 bp): ACCTTTTAAGGGACTAATCTGATCAAAACATAAAATTTTAGGTCAAAACTATAAATTCTGAGTTA CAAGGACACATGGCCGTGTAACCTTGTGAGAAATTGTAGTCATGTGGCATTCGAAACTACAACCT ATAGAGGTGACACGGCCGTGTGGCAGGCAGTGTGAGAAGAAAAAACCTAGAGTTTATGGAGGGAC ATGACCGTGTATGGTAGTCGTGTTGTCCACACGGGTGGCCCACACACTCGTGTGGCTAACCGTGT GGTCTGACCTAGGCTCAATTTTGCCTCGATTTTCTCATAAAATAACACACACCTGACTTCTGGGA TCCTGAACATCGTTCCTTGTGCCTAGATCTGATATGGGGTAGTTGGAATGGTTCCTTCAAATAAT AATTTTCAAGATT Found at i:37557582 original size:15 final size:16 Alignment explanation
Indices: 37557553--37557582 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 37557543 ATTTAGCCAT 37557553 TTTTATTTTTATTGTA 1 TTTTATTTTTATTGTA 37557569 TTTTATTTTT-TTGT 1 TTTTATTTTTATTGT 37557583 TTTCAAATTT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 4 0.29 16 10 0.71 ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80 Consensus pattern (16 bp): TTTTATTTTTATTGTA Found at i:37561440 original size:6 final size:6 Alignment explanation
Indices: 37561429--37561473 Score: 63 Period size: 6 Copynumber: 7.5 Consensus size: 6 37561419 AGTCCATTTG * * * 37561429 TTTTAT TTTTAT TTTTAT TTTTAT TTTCAT GTTTAT TATTAT TTT 1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT 37561474 CTTAGACTTA Statistics Matches: 33, Mismatches: 6, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 6 33 1.00 ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78 Consensus pattern (6 bp): TTTTAT Found at i:37566688 original size:34 final size:30 Alignment explanation
Indices: 37566643--37566714 Score: 99 Period size: 30 Copynumber: 2.3 Consensus size: 30 37566633 ATCACTCCAA 37566643 CACTCCAATCTCATATTTTTTTTCCTCCTAAAAT 1 CACTCCAATCTCATA----TTTTCCTCCTAAAAT * 37566677 CACTCCTATCTCATATTTTCCTCCTAAAAT 1 CACTCCAATCTCATATTTTCCTCCTAAAAT 37566707 CACTCCAA 1 CACTCCAA 37566715 CACTCCCCCA Statistics Matches: 36, Mismatches: 2, Indels: 4 0.86 0.05 0.10 Matches are distributed among these distances: 30 22 0.61 34 14 0.39 ACGTcount: A:0.28, C:0.33, G:0.00, T:0.39 Consensus pattern (30 bp): CACTCCAATCTCATATTTTCCTCCTAAAAT Found at i:37568514 original size:93 final size:93 Alignment explanation
Indices: 37568400--37568594 Score: 329 Period size: 93 Copynumber: 2.1 Consensus size: 93 37568390 ACTTCTATTT * 37568400 TATTAAAAATATAAAATATAAATTACTATTAAAATATTAAACACAACTTTTATTTTATTAAATGA 1 TATTAAAAATATAAAATATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGA * 37568465 AATAATATAAAAACAGTGTGTACAAATA 66 AATAATATAAAAACAGTGTGTAAAAATA * 37568493 TATTAAAAATATATAAA-ATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTGTTAAATG 1 TATTAAAAATATA-AAATATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATG * * 37568557 AAATAATATAAAAACATTTTGTAAAAATA 65 AAATAATATAAAAACAGTGTGTAAAAATA 37568586 TATTAAAAA 1 TATTAAAAA 37568595 AATCAATGTT Statistics Matches: 96, Mismatches: 5, Indels: 2 0.93 0.05 0.02 Matches are distributed among these distances: 93 93 0.97 94 3 0.03 ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36 Consensus pattern (93 bp): TATTAAAAATATAAAATATAAATTACTATTAAAATATTAAAAACAACTTTTATTTTATTAAATGA AATAATATAAAAACAGTGTGTAAAAATA Found at i:37568787 original size:24 final size:24 Alignment explanation
Indices: 37568737--37568793 Score: 71 Period size: 24 Copynumber: 2.4 Consensus size: 24 37568727 AATAAAGGAT * * 37568737 GCGGAGGTGTTTGCATCACCTACG 1 GCGGAGGTGTTTGAATCACCTAAG 37568761 GCGGAGGTGTTTGAATC-CCATAAG 1 GCGGAGGTGTTTGAATCACC-TAAG * 37568785 GCGGTGGTG 1 GCGGAGGTG 37568794 ATTGGTAATG Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 23 2 0.07 24 27 0.93 ACGTcount: A:0.18, C:0.19, G:0.39, T:0.25 Consensus pattern (24 bp): GCGGAGGTGTTTGAATCACCTAAG Found at i:37568975 original size:18 final size:18 Alignment explanation
Indices: 37568935--37568977 Score: 50 Period size: 18 Copynumber: 2.4 Consensus size: 18 37568925 AGACTGGGAA * * * 37568935 AAGGAAACATATAAGGGT 1 AAGGATACATATAAGAGC * 37568953 TAGGATACATATAAGAGC 1 AAGGATACATATAAGAGC 37568971 AAGGATA 1 AAGGATA 37568978 TGCACCTGGC Statistics Matches: 20, Mismatches: 5, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 18 20 1.00 ACGTcount: A:0.49, C:0.07, G:0.26, T:0.19 Consensus pattern (18 bp): AAGGATACATATAAGAGC Found at i:37573611 original size:11 final size:11 Alignment explanation
Indices: 37573566--37573612 Score: 58 Period size: 11 Copynumber: 4.2 Consensus size: 11 37573556 AGAGAGCTTT 37573566 GAGAAATTTAGA 1 GAGAAATTT-GA 37573578 GAGAAATTTGA 1 GAGAAATTTGA * * 37573589 CAGAAAATTGA 1 GAGAAATTTGA * 37573600 GAGAAACTTGA 1 GAGAAATTTGA 37573611 GA 1 GA 37573613 AATAATGTGT Statistics Matches: 31, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 11 22 0.71 12 9 0.29 ACGTcount: A:0.49, C:0.04, G:0.26, T:0.21 Consensus pattern (11 bp): GAGAAATTTGA Found at i:37575268 original size:14 final size:14 Alignment explanation
Indices: 37575245--37575275 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 37575235 TGTTGCGTTC * 37575245 TTAGTTAATTTAGA 1 TTAGTAAATTTAGA 37575259 TTAGTAAATTTAGA 1 TTAGTAAATTTAGA 37575273 TTA 1 TTA 37575276 AAAACAATCA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48 Consensus pattern (14 bp): TTAGTAAATTTAGA Found at i:37581391 original size:14 final size:14 Alignment explanation
Indices: 37581368--37581398 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 37581358 TGTTGCATTC * 37581368 TTAGTTAATTTAGA 1 TTAGTAAATTTAGA 37581382 TTAGTAAATTTAGA 1 TTAGTAAATTTAGA 37581396 TTA 1 TTA 37581399 AAAACAATCA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48 Consensus pattern (14 bp): TTAGTAAATTTAGA Found at i:37582228 original size:9 final size:9 Alignment explanation
Indices: 37582214--37582239 Score: 52 Period size: 9 Copynumber: 2.9 Consensus size: 9 37582204 AATGATAAAT 37582214 ACACGTCCA 1 ACACGTCCA 37582223 ACACGTCCA 1 ACACGTCCA 37582232 ACACGTCC 1 ACACGTCC 37582240 TACATTTTTT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.31, C:0.46, G:0.12, T:0.12 Consensus pattern (9 bp): ACACGTCCA Found at i:37582642 original size:147 final size:148 Alignment explanation
Indices: 37582467--37582770 Score: 558 Period size: 147 Copynumber: 2.1 Consensus size: 148 37582457 AAAAATACAT 37582467 AAAAATTTCTAAAAAATCCACATCAGTACTGAAGTATGTCTAAATTGCAACACAGGTTGCCACAA 1 AAAAATTTCT-AAAAATCCACATCAGTACTGAAGTATGTCTAAATTGCAACACAGGTTGCCACAA 37582532 TTTTGTACGTCTAATTTTCTACAATAATTA-AAGAAATTAATTTTTAAATCAAATAAAATTGAGA 65 TTTTGTACGTCTAATTTTCTACAATAATTATAA-AAATTAATTTTTAAATCAAATAAAATTGAGA 37582596 GCATAAATAAATTTAAATTA 129 GCATAAATAAATTTAAATTA 37582616 AAAAATTTCT-AAAATCCACATCAGTACTGAAGTATGTCTAAATTGCAACACAGGTTGCCACAAT 1 AAAAATTTCTAAAAATCCACATCAGTACTGAAGTATGTCTAAATTGCAACACAGGTTGCCACAAT * 37582680 TTTGTACGTCTAATTTTCTACAATAATTATAAAGATTAATTTTTAAATCAAATAAAATTGAGAGC 66 TTTGTACGTCTAATTTTCTACAATAATTATAAAAATTAATTTTTAAATCAAATAAAATTGAGAGC 37582745 ATAAATAAATTTAAATTA 131 ATAAATAAATTTAAATTA * 37582763 AAAGATTT 1 AAAAATTT 37582771 TAATTTATCA Statistics Matches: 152, Mismatches: 2, Indels: 4 0.96 0.01 0.03 Matches are distributed among these distances: 147 140 0.92 148 2 0.01 149 10 0.07 ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34 Consensus pattern (148 bp): AAAAATTTCTAAAAATCCACATCAGTACTGAAGTATGTCTAAATTGCAACACAGGTTGCCACAAT TTTGTACGTCTAATTTTCTACAATAATTATAAAAATTAATTTTTAAATCAAATAAAATTGAGAGC ATAAATAAATTTAAATTA Found at i:37582829 original size:15 final size:16 Alignment explanation
Indices: 37582806--37582839 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 16 37582796 TTTTACTTAT 37582806 ATAATTTTAATATAAA 1 ATAATTTTAATATAAA * 37582822 ATAA-TTTAATATTAA 1 ATAATTTTAATATAAA 37582837 ATA 1 ATA 37582840 TAATACGGTG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 15 13 0.76 16 4 0.24 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (16 bp): ATAATTTTAATATAAA Found at i:37585210 original size:14 final size:14 Alignment explanation
Indices: 37585187--37585217 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 37585177 TGTTGCATTC * 37585187 TTAGTTAATTTAGA 1 TTAGTAAATTTAGA 37585201 TTAGTAAATTTAGA 1 TTAGTAAATTTAGA 37585215 TTA 1 TTA 37585218 AAAACAATCA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48 Consensus pattern (14 bp): TTAGTAAATTTAGA Found at i:37586047 original size:9 final size:9 Alignment explanation
Indices: 37586033--37586058 Score: 52 Period size: 9 Copynumber: 2.9 Consensus size: 9 37586023 AATGATAAAT 37586033 ACACGTCCA 1 ACACGTCCA 37586042 ACACGTCCA 1 ACACGTCCA 37586051 ACACGTCC 1 ACACGTCC 37586059 TACATTTTTT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.31, C:0.46, G:0.12, T:0.12 Consensus pattern (9 bp): ACACGTCCA Found at i:37586501 original size:15 final size:16 Alignment explanation
Indices: 37586478--37586511 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 16 37586468 TTTTACTTAT 37586478 ATAATTTTAATATAAA 1 ATAATTTTAATATAAA * 37586494 ATAA-TTTAATATTAA 1 ATAATTTTAATATAAA 37586509 ATA 1 ATA 37586512 TAATACGGTG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 15 13 0.76 16 4 0.24 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (16 bp): ATAATTTTAATATAAA Found at i:37590224 original size:16 final size:18 Alignment explanation
Indices: 37590193--37590231 Score: 64 Period size: 16 Copynumber: 2.3 Consensus size: 18 37590183 TGTATAATAA 37590193 TAAATTTAATTTTTAGTT 1 TAAATTTAATTTTTAGTT 37590211 TAAATTT-A-TTTTAGTT 1 TAAATTTAATTTTTAGTT 37590227 TAAAT 1 TAAAT 37590232 CAAGATAATT Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 16 13 0.62 17 1 0.05 18 7 0.33 ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59 Consensus pattern (18 bp): TAAATTTAATTTTTAGTT Found at i:37591307 original size:26 final size:27 Alignment explanation
Indices: 37591278--37591344 Score: 84 Period size: 26 Copynumber: 2.6 Consensus size: 27 37591268 AGTAAAGCTG * * 37591278 CCAGTAACAGTA-ACGTAGCAAGGCTA 1 CCAGTAACAGTATACGTAGCAAAGCCA * * 37591304 CCAGTAACAGTATATGTGGCAAAGCCA 1 CCAGTAACAGTATACGTAGCAAAGCCA 37591331 CCAGT-ACAGTATAC 1 CCAGTAACAGTATAC 37591345 TTCCCCTATA Statistics Matches: 35, Mismatches: 5, Indels: 2 0.83 0.12 0.05 Matches are distributed among these distances: 26 20 0.57 27 15 0.43 ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18 Consensus pattern (27 bp): CCAGTAACAGTATACGTAGCAAAGCCA Found at i:37591523 original size:27 final size:27 Alignment explanation
Indices: 37591507--37591713 Score: 247 Period size: 27 Copynumber: 7.7 Consensus size: 27 37591497 TACCTTATAG 37591507 GGGTATTTCGGTCATTTTACCCTTCG- 1 GGGTATTTCGGTCATTTTACCCTTCGA 37591533 GGAGTATTTCGGTCATTTTACCCTTCGA 1 GG-GTATTTCGGTCATTTTACCCTTCGA * ** * * 37591561 GGGCATTTCTCTCATTATACCCTTCAA 1 GGGTATTTCGGTCATTTTACCCTTCGA * ** 37591588 GGGAATTTTAGTCATTTTACCCTTCG- 1 GGGTATTTCGGTCATTTTACCCTTCGA ** * 37591614 GAGGTATTTCGACCATTTTACCCTTTGA 1 G-GGTATTTCGGTCATTTTACCCTTCGA 37591642 GGGTATTTCGGTCATTTTACCCTTCGA 1 GGGTATTTCGGTCATTTTACCCTTCGA * ** * 37591669 GGGCATTTCAATCATTTTACCCTTTGA 1 GGGTATTTCGGTCATTTTACCCTTCGA 37591696 GGGTATTTCGGTCATTTT 1 GGGTATTTCGGTCATTTT 37591714 TCCCACGAAT Statistics Matches: 150, Mismatches: 27, Indels: 7 0.82 0.15 0.04 Matches are distributed among these distances: 26 3 0.02 27 144 0.96 28 3 0.02 ACGTcount: A:0.18, C:0.22, G:0.19, T:0.41 Consensus pattern (27 bp): GGGTATTTCGGTCATTTTACCCTTCGA Found at i:37592618 original size:17 final size:17 Alignment explanation
Indices: 37592585--37592618 Score: 50 Period size: 17 Copynumber: 2.0 Consensus size: 17 37592575 TAAATAATAA * * 37592585 AATATAAATTTATAATT 1 AATATAAAATTAAAATT 37592602 AATATAAAATTAAAATT 1 AATATAAAATTAAAATT 37592619 TCTTTTGGTG Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (17 bp): AATATAAAATTAAAATT Found at i:37592914 original size:14 final size:14 Alignment explanation
Indices: 37592895--37592925 Score: 62 Period size: 14 Copynumber: 2.2 Consensus size: 14 37592885 TATCGAAATT 37592895 TTTTAAAACATTTA 1 TTTTAAAACATTTA 37592909 TTTTAAAACATTTA 1 TTTTAAAACATTTA 37592923 TTT 1 TTT 37592926 AGTTTAGTAT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 17 1.00 ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55 Consensus pattern (14 bp): TTTTAAAACATTTA Found at i:37596700 original size:15 final size:16 Alignment explanation
Indices: 37596677--37596710 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 16 37596667 TTTTACTTAT 37596677 ATAATTTTAATATAAA 1 ATAATTTTAATATAAA * 37596693 ATAA-TTTAATATTAA 1 ATAATTTTAATATAAA 37596708 ATA 1 ATA 37596711 TAATACGGTG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 15 13 0.76 16 4 0.24 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (16 bp): ATAATTTTAATATAAA Found at i:37604456 original size:15 final size:16 Alignment explanation
Indices: 37604433--37604466 Score: 52 Period size: 15 Copynumber: 2.2 Consensus size: 16 37604423 TTTTACTTAT 37604433 ATAATTTTAATATAAA 1 ATAATTTTAATATAAA * 37604449 ATAA-TTTAATATTAA 1 ATAATTTTAATATAAA 37604464 ATA 1 ATA 37604467 TAATACGGTG Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 15 13 0.76 16 4 0.24 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (16 bp): ATAATTTTAATATAAA Found at i:37605864 original size:14 final size:14 Alignment explanation
Indices: 37605841--37605871 Score: 53 Period size: 14 Copynumber: 2.2 Consensus size: 14 37605831 TATTGCGTTC * 37605841 TTAGTTAATTTAGA 1 TTAGTAAATTTAGA 37605855 TTAGTAAATTTAGA 1 TTAGTAAATTTAGA 37605869 TTA 1 TTA 37605872 AAAACAATCA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 14 16 1.00 ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48 Consensus pattern (14 bp): TTAGTAAATTTAGA Found at i:37607391 original size:27 final size:27 Alignment explanation
Indices: 37607349--37607437 Score: 108 Period size: 27 Copynumber: 3.3 Consensus size: 27 37607339 TGCGAATCAT * 37607349 GGTAAAATGATTGAATTACCCCCGAAG 1 GGTAAAATGATCGAATTACCCCCGAAG * 37607376 GGTAAAATGATCGAATTACCCCCGAAT 1 GGTAAAATGATCGAATTACCCCCGAAG *** * 37607403 TACAAAATGA-CAGAATTACCCTCGAAG 1 GGTAAAATGATC-GAATTACCCCCGAAG 37607430 GGTAAAAT 1 GGTAAAAT 37607438 AACTGTTATA Statistics Matches: 51, Mismatches: 10, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 26 1 0.02 27 50 0.98 ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21 Consensus pattern (27 bp): GGTAAAATGATCGAATTACCCCCGAAG Found at i:37607662 original size:26 final size:26 Alignment explanation
Indices: 37607606--37607682 Score: 82 Period size: 26 Copynumber: 2.9 Consensus size: 26 37607596 ACTGGTGGCT * * * * 37607606 TTGCCACATATACTGTTACTGGAAGCT 1 TTGCTACAT-TACTATTACTGGCAGCA * 37607633 TTGCTACATTACTATTACTAGCAGCA 1 TTGCTACATTACTATTACTGGCAGCA * * 37607659 TTGCTGCATCACTATTACTGGCAG 1 TTGCTACATTACTATTACTGGCAG 37607683 TTTGCTGCGA Statistics Matches: 42, Mismatches: 8, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 26 34 0.81 27 8 0.19 ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34 Consensus pattern (26 bp): TTGCTACATTACTATTACTGGCAGCA Found at i:37608614 original size:24 final size:24 Alignment explanation
Indices: 37608565--37608614 Score: 59 Period size: 24 Copynumber: 2.1 Consensus size: 24 37608555 AATTTAGCCA * 37608565 TTTGTTTTTATTGTATTTTATTTT 1 TTTGTTTTTATTGTATTTTATGTT 37608589 TTTGTTTTTAGTT-TAATTTT-TGTT 1 TTTGTTTTTA-TTGT-ATTTTATGTT 37608613 TT 1 TT 37608615 CTAATTTTTT Statistics Matches: 23, Mismatches: 1, Indels: 4 0.82 0.04 0.14 Matches are distributed among these distances: 24 16 0.70 25 7 0.30 ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78 Consensus pattern (24 bp): TTTGTTTTTATTGTATTTTATGTT Found at i:37614055 original size:20 final size:20 Alignment explanation
Indices: 37614030--37614075 Score: 58 Period size: 20 Copynumber: 2.3 Consensus size: 20 37614020 GAGCATTTCA * 37614030 TATTATTCATTTTAAATCT-T 1 TATTATTCACTTTAAAT-TGT * 37614050 TATTATTTACTTTAAATTGT 1 TATTATTCACTTTAAATTGT 37614070 TATTAT 1 TATTAT 37614076 GTGATTTTAT Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 19 1 0.04 20 22 0.96 ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61 Consensus pattern (20 bp): TATTATTCACTTTAAATTGT Found at i:37620114 original size:22 final size:22 Alignment explanation
Indices: 37620089--37620138 Score: 64 Period size: 22 Copynumber: 2.3 Consensus size: 22 37620079 CGCCTGTACG * 37620089 TGATTTGCACTACGATGCCTAC 1 TGATCTGCACTACGATGCCTAC * * 37620111 TGATCTGCATTACGGTGCCTAC 1 TGATCTGCACTACGATGCCTAC * 37620133 TAATCT 1 TGATCT 37620139 ACATTTTGCT Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 22 24 1.00 ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34 Consensus pattern (22 bp): TGATCTGCACTACGATGCCTAC Found at i:37620143 original size:22 final size:22 Alignment explanation
Indices: 37620099--37620143 Score: 63 Period size: 22 Copynumber: 2.0 Consensus size: 22 37620089 TGATTTGCAC * * 37620099 TACGATGCCTACTGATCTGCAT 1 TACGATGCCTACTAATCTACAT * 37620121 TACGGTGCCTACTAATCTACAT 1 TACGATGCCTACTAATCTACAT 37620143 T 1 T 37620144 TTGCTTCCTA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 22 20 1.00 ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33 Consensus pattern (22 bp): TACGATGCCTACTAATCTACAT Found at i:37620603 original size:3 final size:3 Alignment explanation
Indices: 37620595--37620673 Score: 151 Period size: 3 Copynumber: 26.7 Consensus size: 3 37620585 AATCAAACAC 37620595 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA 37620643 ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA AT 1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT 37620674 TGGTAGCATA Statistics Matches: 75, Mismatches: 0, Indels: 2 0.97 0.00 0.03 Matches are distributed among these distances: 2 2 0.03 3 73 0.97 ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34 Consensus pattern (3 bp): ATA Found at i:37621681 original size:2 final size:2 Alignment explanation
Indices: 37621676--37621707 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 37621666 GAATTTTCAC 37621676 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 37621708 GAAGAATTAA Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:37624236 original size:18 final size:17 Alignment explanation
Indices: 37624196--37624238 Score: 52 Period size: 18 Copynumber: 2.4 Consensus size: 17 37624186 GTTTAAGGTG 37624196 TAATTAATTTAAAATTT 1 TAATTAATTTAAAATTT 37624213 TCAATTAA-TTAAATATATT 1 T-AATTAATTTAAA-AT-TT 37624232 TAATTAA 1 TAATTAA 37624239 AAATCTATTC Statistics Matches: 23, Mismatches: 0, Indels: 5 0.82 0.00 0.18 Matches are distributed among these distances: 17 6 0.26 18 14 0.61 19 3 0.13 ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49 Consensus pattern (17 bp): TAATTAATTTAAAATTT Found at i:37629819 original size:21 final size:22 Alignment explanation
Indices: 37629790--37629830 Score: 66 Period size: 21 Copynumber: 1.9 Consensus size: 22 37629780 ATTTTGGCGT 37629790 GGATCAAATTAT-TCAAAATAA 1 GGATCAAATTATGTCAAAATAA * 37629811 GGATGAAATTATGTCAAAAT 1 GGATCAAATTATGTCAAAAT 37629831 GAAGTACATG Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 21 11 0.61 22 7 0.39 ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29 Consensus pattern (22 bp): GGATCAAATTATGTCAAAATAA Found at i:37634555 original size:19 final size:20 Alignment explanation
Indices: 37634531--37634574 Score: 63 Period size: 19 Copynumber: 2.2 Consensus size: 20 37634521 ATTGAACTTG * 37634531 AAAATTGGACCCGAG-ATCA 1 AAAATTGAACCCGAGAATCA * 37634550 AAAATTGAACTCGAGAATCA 1 AAAATTGAACCCGAGAATCA 37634570 AAAAT 1 AAAAT 37634575 CGAGATCAAA Statistics Matches: 22, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 19 13 0.59 20 9 0.41 ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18 Consensus pattern (20 bp): AAAATTGAACCCGAGAATCA Found at i:37636208 original size:21 final size:21 Alignment explanation
Indices: 37636184--37636225 Score: 59 Period size: 21 Copynumber: 2.0 Consensus size: 21 37636174 CCTAGCGCCG * 37636184 CACCCTA-CCTAGCCGCCACCA 1 CACCCTAGCCT-GCCACCACCA 37636205 CACCCTAGCCTGCCACCACCA 1 CACCCTAGCCTGCCACCACCA 37636226 ACTACTCTGC Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 21 16 0.84 22 3 0.16 ACGTcount: A:0.24, C:0.57, G:0.10, T:0.10 Consensus pattern (21 bp): CACCCTAGCCTGCCACCACCA Found at i:37637379 original size:40 final size:40 Alignment explanation
Indices: 37637335--37637473 Score: 138 Period size: 40 Copynumber: 3.4 Consensus size: 40 37637325 TATTTAAAAA * 37637335 ATTATTGTTTATATTCTTTTTATTTGTGTATATTTTCATC 1 ATTATTTTTTATATTCTTTTTATTTGTGTATATTTTCATC * * * * * * ** 37637375 ATTATTTTTTATTTTCTAAGTATATTTCT-CATATACTTCAAAA 1 ATTATTTTTTATATTCT--TTTTATTTGTGTATAT-TTTC-ATC 37637418 ATTA-TTTTTATATTCTTTTTATTTGTGTATATTTTCATC 1 ATTATTTTTTATATTCTTTTTATTTGTGTATATTTTCATC * 37637457 ATTATTTTTTATTTTCT 1 ATTATTTTTTATATTCT 37637474 AAGTATATTT Statistics Matches: 75, Mismatches: 18, Indels: 12 0.71 0.17 0.11 Matches are distributed among these distances: 39 5 0.07 40 36 0.48 41 8 0.11 42 21 0.28 43 5 0.07 ACGTcount: A:0.24, C:0.09, G:0.04, T:0.63 Consensus pattern (40 bp): ATTATTTTTTATATTCTTTTTATTTGTGTATATTTTCATC Found at i:37637444 original size:82 final size:83 Alignment explanation
Indices: 37637316--37637497 Score: 339 Period size: 82 Copynumber: 2.2 Consensus size: 83 37637306 TTATTTATTC * * 37637316 TTTCTCATATATTTAAAAAATTATTGTTTATATTCTTTTTATTTGTGTATATTTTCATCATTATT 1 TTTCTCATATACTTCAAAAATTATTGTTTATATTCTTTTTATTTGTGTATATTTTCATCATTATT 37637381 TTTTATTTTCTAAGTATA 66 TTTTATTTTCTAAGTATA 37637399 TTTCTCATATACTTCAAAAATTATT-TTTATATTCTTTTTATTTGTGTATATTTTCATCATTATT 1 TTTCTCATATACTTCAAAAATTATTGTTTATATTCTTTTTATTTGTGTATATTTTCATCATTATT 37637463 TTTTATTTTCTAAGTATA 66 TTTTATTTTCTAAGTATA 37637481 TTTCTCATATACTTCAA 1 TTTCTCATATACTTCAA 37637498 TTTAATATTA Statistics Matches: 97, Mismatches: 2, Indels: 1 0.97 0.02 0.01 Matches are distributed among these distances: 82 74 0.76 83 23 0.24 ACGTcount: A:0.27, C:0.10, G:0.04, T:0.59 Consensus pattern (83 bp): TTTCTCATATACTTCAAAAATTATTGTTTATATTCTTTTTATTTGTGTATATTTTCATCATTATT TTTTATTTTCTAAGTATA Found at i:37644261 original size:18 final size:17 Alignment explanation
Indices: 37644233--37644267 Score: 52 Period size: 18 Copynumber: 2.0 Consensus size: 17 37644223 NNNNNNNAGA * 37644233 ATTTTATTAAATTATAT 1 ATTTTATTAAAATATAT 37644250 ATTTTAATTAAAATATAT 1 ATTTT-ATTAAAATATAT 37644268 TTAATAATAA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 17 5 0.31 18 11 0.69 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (17 bp): ATTTTATTAAAATATAT Found at i:37644524 original size:16 final size:16 Alignment explanation
Indices: 37644503--37644538 Score: 72 Period size: 16 Copynumber: 2.2 Consensus size: 16 37644493 GATTTGCTAT 37644503 TACACCTCTAATCCAA 1 TACACCTCTAATCCAA 37644519 TACACCTCTAATCCAA 1 TACACCTCTAATCCAA 37644535 TACA 1 TACA 37644539 GCGAACCAAA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 20 1.00 ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25 Consensus pattern (16 bp): TACACCTCTAATCCAA Found at i:37653809 original size:45 final size:43 Alignment explanation
Indices: 37653710--37654193 Score: 400 Period size: 45 Copynumber: 10.9 Consensus size: 43 37653700 TTATCATGAT * * * * * * 37653710 AAATCTTATCTCCCTAAAGTTGTAATGGAGCAAATT-AAAACCAC 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAC * * 37653754 AAATCTTATCTCATTGAAGTTACAGTGGAGCAGATTGAAGATAGC 1 AAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGATA-C * ** 37653799 AAATCTTATCTCTCTGAAGTTGCGGTGGAGCAGATTGAATTTAGC 1 AAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGATA-C * * * * 37653844 AAATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAG-TCAC 1 AAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGAT-AC * * * 37653888 AAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATT-AAAACCAC 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAC * 37653932 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAAGATAGC 1 AAATCTTATC-TCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-C * * 37653977 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCATATTGAAGATAAC 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AC * * * * * * 37654022 AAATCTTATCACTCTAAAATTGCTGTAGCGCAGATTGAAG-TCAC 1 AAATCTTATCTC-CTGAAGTTGCAGTGGAGCAGATTGAAGAT-AC * * * * 37654066 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGTTAC 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAAGATAC * * ** 37654110 AAATCTTATCTCCCTGAAGTTACAGTGGAGCAAGATTAAATCTAC 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGC-AGATTGAAGATAC * * * * * 37654155 AAGTCTTATCTCCCTAAAATTGCAGCGGAGTAGATTGAA 1 AAATCTTATCT-CCTGAAGTTGCAGTGGAGCAGATTGAA 37654194 AATAAATCCT Statistics Matches: 365, Mismatches: 59, Indels: 32 0.80 0.13 0.07 Matches are distributed among these distances: 43 3 0.01 44 168 0.46 45 193 0.53 46 1 0.00 ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29 Consensus pattern (43 bp): AAATCTTATCTCCTGAAGTTGCAGTGGAGCAGATTGAAGATAC Found at i:37653891 original size:89 final size:89 Alignment explanation
Indices: 37653710--37654410 Score: 446 Period size: 89 Copynumber: 7.8 Consensus size: 89 37653700 TTATCATGAT * * * *** * * * 37653710 AAATCTTATCTCCCTAAAGTTGTAATGGAGCAAATTAAAACCACAAATCTTATCTCAT-TGAAGT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATCAC-TCTAAAAT * * 37653774 TACAGTGGAGCAGATTGAAGATAGC 65 TGCAGTAGAGCAGATTGAAGATAGC * * * * * 37653799 AAATCTTATCTCTCTGAAGTTGCGGTGGAGCAGATTGAATTTAGCAAATCTTATCACTCTAAAAT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTA-CAAATCTTATCACTCTAAAAT 37653864 TGCAGTAGAGCAGATTGAAG-TCA-C 65 TGCAGTAGAGCAGATTGAAGAT-AGC * * *** * * * 37653888 AAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATC-TTCCTGAAGT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATCACT-CTAAAAT * * 37653952 TGCAGTGGAGCAAATTGAAGATAGC 65 TGCAGTAGAGCAGATTGAAGATAGC * * * 37653977 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCATATTGAAGATAACAAATCTTATCACTCTAAAAT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG-TTACAAATCTTATCACTCTAAAAT * * 37654042 TGCTGTAGCGCAGATTGAAG-TCA-C 65 TGCAGTAGAGCAGATTGAAGAT-AGC * * * * * 37654066 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATCACTCTAAAATT * * * ** 37654131 ACAGTGGAGCAAGATTAAATCTA-C 66 GCAGTAGAGC-AGATTGAAGATAGC * * * * * * * 37654155 AAGTCTTATCTCCCTAAAATTGCAGCGGAGTAGATTGAAA---ATAAATCCTAT-ACCTCTAAAG 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGTTACAAATCTTATCA-CTCTAAAA * * * * * 37654216 TTGTAGT-GGGTCGGATTAAATTTACCATAGC 64 TTGCAGTAGAG-CAGATT-GA---A-GATAGC * * * * * * 37654247 AAATCGTATCTCCCTAAAGTTGTAGTGGAACATATTAAAGATACAAGTTACAAATGTTATCTCTC 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-T-----TA-AAGTTACAAATCTTATCACTC * * * 37654312 T-AAATTGCAGTGGAGTAGATTGAAGCTA-C 59 TAAAATTGCAGTAGAGCAGATTGAAGATAGC * * * ** * * * 37654341 AAGTC-T-TCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACTACAAGTTTTAT-ACCCTTAAAAT 1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATCACTC-TAAAAT 37654403 TGCAGTAG 65 TGCAGTAG 37654411 GTTAAAATGA Statistics Matches: 476, Mismatches: 102, Indels: 71 0.73 0.16 0.11 Matches are distributed among these distances: 84 2 0.00 85 13 0.03 86 19 0.04 87 24 0.05 88 61 0.13 89 190 0.40 90 74 0.16 91 4 0.01 92 48 0.10 93 2 0.00 94 5 0.01 95 2 0.00 96 1 0.00 97 1 0.00 98 3 0.01 99 1 0.00 100 12 0.03 101 14 0.03 ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30 Consensus pattern (89 bp): AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTTATCACTCTAAAATT GCAGTAGAGCAGATTGAAGATAGC Found at i:37654027 original size:178 final size:178 Alignment explanation
Indices: 37653710--37654198 Score: 685 Period size: 178 Copynumber: 2.7 Consensus size: 178 37653700 TTATCATGAT * * * 37653710 AAATCTTATCTCCCTAAAGTTGTAATGGAGCAAATTAAAACCACAAATCTTATC-TCATTGAAGT 1 AAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATCTTC-CTGAAGT * * * * * 37653774 TACAGTGGAGCAGATTGAAGATAGCAAATCTTATCTCTCTGAAGTTGCGGTGGAGCAGATTGAAT 65 TACAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAA * * 37653839 TTAGCAAATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAGTCAC 130 ATAACAAATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAGTCAC * 37653888 AAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATCTTCCTGAAGTT 1 AAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATCTTCCTGAAGTT * * * 37653953 GCAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCATATTGAAGA 66 ACAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAA * * 37654018 TAACAAATCTTATCACTCTAAAATTGCTGTAGCGCAGATTGAAGTCAC 131 TAACAAATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAGTCAC * * *** * 37654066 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGTTACAAATCTTATCTCCCTGAAGTT 1 AAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATCTTCCTGAAGTT * ** * * * * 37654131 ACAGTGGAGCAAGATTAAATCTA-CAAGTCTTATCTCCCTAAAATTGCAGCGGAGTAGATTGAAA 66 ACAGTGGAGCAA-ATTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAA 37654195 ATAA 130 ATAA 37654199 ATCCTATACC Statistics Matches: 277, Mismatches: 32, Indels: 4 0.88 0.10 0.01 Matches are distributed among these distances: 178 268 0.97 179 9 0.03 ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29 Consensus pattern (178 bp): AAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAACCACAAATCTTATCTTCCTGAAGTT ACAGTGGAGCAAATTGAAGATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAAA TAACAAATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAGTCAC Found at i:37654742 original size:21 final size:21 Alignment explanation
Indices: 37654713--37654755 Score: 61 Period size: 21 Copynumber: 2.0 Consensus size: 21 37654703 AAAAAACTAG * 37654713 CGCCGCACCCTA-CCTAGCCAC 1 CGCCACACCCTAGCCTA-CCAC 37654734 CGCCACACCCTAGCCTACCAC 1 CGCCACACCCTAGCCTACCAC 37654755 C 1 C 37654756 ACTAATTGCT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 21 16 0.80 22 4 0.20 ACGTcount: A:0.21, C:0.58, G:0.12, T:0.09 Consensus pattern (21 bp): CGCCACACCCTAGCCTACCAC Found at i:37655848 original size:16 final size:16 Alignment explanation
Indices: 37655827--37655879 Score: 56 Period size: 16 Copynumber: 3.4 Consensus size: 16 37655817 CTTTATTAAA * 37655827 TTATTTGCTT-TTCTAT 1 TTATTTACTTATT-TAT 37655843 TTATTTACTTATTTAT 1 TTATTTACTTATTTAT * * 37655859 TTAATTATTTATTTA- 1 TTATTTACTTATTTAT 37655874 TTATTT 1 TTATTT 37655880 CTTTATTCTT Statistics Matches: 32, Mismatches: 4, Indels: 3 0.82 0.10 0.08 Matches are distributed among these distances: 15 5 0.16 16 25 0.78 17 2 0.06 ACGTcount: A:0.23, C:0.06, G:0.02, T:0.70 Consensus pattern (16 bp): TTATTTACTTATTTAT Found at i:37655849 original size:4 final size:4 Alignment explanation
Indices: 37655840--37655886 Score: 60 Period size: 4 Copynumber: 12.0 Consensus size: 4 37655830 TTTGCTTTTC * * * 37655840 TATT TATT TACT TATT TATT TAAT TATT TATT TA-T TATT TCTT TATT 1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT 37655887 CTTTCTCATA Statistics Matches: 36, Mismatches: 6, Indels: 2 0.82 0.14 0.05 Matches are distributed among these distances: 3 3 0.08 4 33 0.92 ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70 Consensus pattern (4 bp): TATT Found at i:37655855 original size:12 final size:11 Alignment explanation
Indices: 37655840--37655886 Score: 67 Period size: 12 Copynumber: 4.1 Consensus size: 11 37655830 TTTGCTTTTC 37655840 TATTTATTTACT 1 TATTTATTTA-T 37655852 TATTTATTTAAT 1 TATTTATTT-AT 37655864 TATTTATTTAT 1 TATTTATTTAT * 37655875 TATTTCTTTAT 1 TATTTATTTAT 37655886 T 1 T 37655887 CTTTCTCATA Statistics Matches: 33, Mismatches: 1, Indels: 3 0.89 0.03 0.08 Matches are distributed among these distances: 11 13 0.39 12 19 0.58 13 1 0.03 ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70 Consensus pattern (11 bp): TATTTATTTAT Found at i:37655891 original size:11 final size:11 Alignment explanation
Indices: 37655826--37655892 Score: 55 Period size: 12 Copynumber: 5.8 Consensus size: 11 37655816 TCTTTATTAA 37655826 ATTATTTGCTTT 1 ATTATTT-CTTT * 37655838 -TCTATTTATTT 1 AT-TATTTCTTT * 37655849 ACTTATTTATTT 1 A-TTATTTCTTT * 37655861 AATTATTTATTT 1 -ATTATTTCTTT 37655873 ATTATTTCTTT 1 ATTATTTCTTT * 37655884 ATTCTTTCT 1 ATTATTTCT 37655893 CATATATTTA Statistics Matches: 48, Mismatches: 3, Indels: 9 0.80 0.05 0.15 Matches are distributed among these distances: 11 22 0.46 12 24 0.50 13 2 0.04 ACGTcount: A:0.21, C:0.09, G:0.01, T:0.69 Consensus pattern (11 bp): ATTATTTCTTT Found at i:37660399 original size:25 final size:25 Alignment explanation
Indices: 37660371--37660420 Score: 64 Period size: 25 Copynumber: 2.0 Consensus size: 25 37660361 TATTCAATTC * * * 37660371 AATATTCATAATCAATATATTTCAT 1 AATATACAAAATCAATACATTTCAT * 37660396 AATATACAAAATCAATCCATTTCAT 1 AATATACAAAATCAATACATTTCAT 37660421 TTCAATTATG Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 25 21 1.00 ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38 Consensus pattern (25 bp): AATATACAAAATCAATACATTTCAT Found at i:37661816 original size:20 final size:20 Alignment explanation
Indices: 37661791--37661836 Score: 58 Period size: 20 Copynumber: 2.3 Consensus size: 20 37661781 TTTATAAATA * 37661791 TTTTAT-AATTTTGTATGTAC 1 TTTTATAAAATTT-TATGTAC * 37661811 TTTTATAAAATTTTATGTAT 1 TTTTATAAAATTTTATGTAC 37661831 TTTTAT 1 TTTTAT 37661837 CGAAAAAGAT Statistics Matches: 23, Mismatches: 2, Indels: 2 0.85 0.07 0.07 Matches are distributed among these distances: 20 18 0.78 21 5 0.22 ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63 Consensus pattern (20 bp): TTTTATAAAATTTTATGTAC Found at i:37667432 original size:33 final size:34 Alignment explanation
Indices: 37667382--37667457 Score: 120 Period size: 33 Copynumber: 2.3 Consensus size: 34 37667372 CTATTGTGAA * 37667382 AATTCAATT-AAACCATTTTGAAGTTTAAAGATC 1 AATTTAATTCAAACCATTTTGAAGTTTAAAGATC * 37667415 AATTTAATTCAAA-CATTTTGAAGTTTAAAGTTC 1 AATTTAATTCAAACCATTTTGAAGTTTAAAGATC 37667448 AATTTAATTC 1 AATTTAATTC 37667458 GACTGATCCT Statistics Matches: 40, Mismatches: 2, Indels: 2 0.91 0.05 0.05 Matches are distributed among these distances: 33 37 0.93 34 3 0.08 ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41 Consensus pattern (34 bp): AATTTAATTCAAACCATTTTGAAGTTTAAAGATC Found at i:37668025 original size:21 final size:21 Alignment explanation
Indices: 37667972--37668025 Score: 90 Period size: 21 Copynumber: 2.6 Consensus size: 21 37667962 ATATGGGCCG * * 37667972 GGTTCAAGCTTAAACATTTAA 1 GGTTCGAGCTTGAACATTTAA 37667993 GGTTCGAGCTTGAACATTTAA 1 GGTTCGAGCTTGAACATTTAA 37668014 GGTTCGAGCTTG 1 GGTTCGAGCTTG 37668026 GCCTAGCCCG Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 21 31 1.00 ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33 Consensus pattern (21 bp): GGTTCGAGCTTGAACATTTAA Found at i:37670348 original size:39 final size:39 Alignment explanation
Indices: 37670241--37670365 Score: 166 Period size: 40 Copynumber: 3.2 Consensus size: 39 37670231 AAAAAAGCCA 37670241 CTAAAAATCAAGCATTAGCGGCGTTTTTAGAAAAGCGCCG 1 CTAAAAATCAAGCATTAGCGGCGTTTTT-GAAAAGCGCCG ** * 37670281 CTAAAGGTCGAGCATTAGCGGCGCTTTTTGGAAAA-CGCCG 1 CTAAAAATCAAGCATTAGCGGCG-TTTTT-GAAAAGCGCCG 37670321 CTAAAAAT-AAGCATTAGCGGCGTTTTTTGAAAAGCGCCG 1 CTAAAAATCAAGCATTAGCGGCG-TTTTTGAAAAGCGCCG 37670360 C-AAAAA 1 CTAAAAA 37670366 GCCTAAGCCC Statistics Matches: 75, Mismatches: 8, Indels: 6 0.84 0.09 0.07 Matches are distributed among these distances: 38 10 0.13 39 24 0.32 40 31 0.41 41 10 0.13 ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22 Consensus pattern (39 bp): CTAAAAATCAAGCATTAGCGGCGTTTTTGAAAAGCGCCG Found at i:37670440 original size:28 final size:28 Alignment explanation
Indices: 37670387--37670441 Score: 94 Period size: 27 Copynumber: 2.0 Consensus size: 28 37670377 ACAACGTCGA 37670387 GTTTTGGGGGCCTTTAGCGGCGTTTTTG 1 GTTTTGGGGGCCTTTAGCGGCGTTTTTG * 37670415 GTTTTGGGGG-CTTTGGCGGCGTTTTTG 1 GTTTTGGGGGCCTTTAGCGGCGTTTTTG 37670442 AAGAAACGCC Statistics Matches: 26, Mismatches: 1, Indels: 1 0.93 0.04 0.04 Matches are distributed among these distances: 27 16 0.62 28 10 0.38 ACGTcount: A:0.02, C:0.13, G:0.42, T:0.44 Consensus pattern (28 bp): GTTTTGGGGGCCTTTAGCGGCGTTTTTG Found at i:37670487 original size:41 final size:41 Alignment explanation
Indices: 37670425--37670552 Score: 211 Period size: 41 Copynumber: 3.1 Consensus size: 41 37670415 GTTTTGGGGG * * 37670425 CTTTGGCGGCGTTTTTGAAGAAACGCCGCTAATGCTCGGGC 1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGC * 37670466 CTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCGGGC 1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGC * * 37670507 CTTTAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCAGGC 1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGC 37670548 CTTTA 1 CTTTA 37670553 ATTTGTAAAA Statistics Matches: 81, Mismatches: 6, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 41 81 1.00 ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28 Consensus pattern (41 bp): CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGC Found at i:37672510 original size:43 final size:43 Alignment explanation
Indices: 37672449--37673141 Score: 1334 Period size: 43 Copynumber: 16.1 Consensus size: 43 37672439 NNNNNNNNNN 37672449 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672492 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672535 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672578 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672621 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG * 37672664 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCT 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672707 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672750 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672793 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672836 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672879 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37672922 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG * 37672965 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCT 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37673008 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG * * 37673051 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGTAAAAGCACCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG * 37673094 CTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG-AAAGCGCCG 1 CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG 37673136 CTAAAG 1 CTAAAG 37673142 TTAGCGACGT Statistics Matches: 641, Mismatches: 9, Indels: 1 0.98 0.01 0.00 Matches are distributed among these distances: 42 14 0.02 43 627 0.98 ACGTcount: A:0.19, C:0.21, G:0.34, T:0.26 Consensus pattern (43 bp): CTAAAGGTCCTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG Found at i:37675559 original size:26 final size:25 Alignment explanation
Indices: 37675511--37675559 Score: 62 Period size: 26 Copynumber: 1.9 Consensus size: 25 37675501 AATAAACTGG * * 37675511 TTTTTTTATTAAAAATTTCATCTAT 1 TTTTTTTATTAAAAAATTAATCTAT * 37675536 TTTTTATTGTTAAAAAATTAATCT 1 TTTTT-TTATTAAAAAATTAATCT 37675560 TTATATATCG Statistics Matches: 20, Mismatches: 3, Indels: 1 0.83 0.12 0.04 Matches are distributed among these distances: 25 5 0.25 26 15 0.75 ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57 Consensus pattern (25 bp): TTTTTTTATTAAAAAATTAATCTAT Found at i:37684739 original size:31 final size:30 Alignment explanation
Indices: 37684696--37684806 Score: 91 Period size: 31 Copynumber: 3.6 Consensus size: 30 37684686 GAGCTTAATT * 37684696 AAAAATTTCAAAAAATTTCAAGGGAAAAATG 1 AAAATTTTC-AAAAATTTCAAGGGAAAAATG * * * 37684727 AAAATTTTCAAAAA-TT-ATAGGGAACCTACTT 1 AAAATTTTCAAAAATTTCA-AGGGAA--AAATG * * 37684758 AAAATTTTCTAAAATTTTCAAGGGAGAAATG 1 AAAATTTTC-AAAAATTTCAAGGGAAAAATG * * 37684789 AAAATTTTCCAAATTTTC 1 AAAATTTTCAAAAATTTC 37684807 CAAAATGCAA Statistics Matches: 64, Mismatches: 10, Indels: 13 0.74 0.11 0.15 Matches are distributed among these distances: 28 1 0.02 29 8 0.12 30 13 0.20 31 30 0.47 32 4 0.06 33 7 0.11 34 1 0.02 ACGTcount: A:0.48, C:0.10, G:0.11, T:0.32 Consensus pattern (30 bp): AAAATTTTCAAAAATTTCAAGGGAAAAATG Found at i:37686027 original size:94 final size:94 Alignment explanation
Indices: 37685919--37686108 Score: 292 Period size: 94 Copynumber: 2.0 Consensus size: 94 37685909 CGTACGTACG * * * 37685919 TATGTATGTATGTAAATTAAGGTTTCATAGATCCCATACATTTAGCATAATGT-TGTTGTCTCAT 1 TATGTATGTATGTAAATGAAGGTTTCATAGATCCAATACATTTAGCATAAT-TCTGTTGTCCCAT * 37685983 ACATTCTTGAGGTCTTATGCAAATTGCAAA 65 ACATTCTTGAGGTCTTATGCAAATTACAAA * * * 37686013 TATGTATGTATGTAAATGAAGGTTTCATAGGTCCAATACATTTAGTATAATTCTGTTTTCCCATA 1 TATGTATGTATGTAAATGAAGGTTTCATAGATCCAATACATTTAGCATAATTCTGTTGTCCCATA * 37686078 CATTCTTGAGGTCTTATGCAACTTACAAA 66 CATTCTTGAGGTCTTATGCAAATTACAAA 37686107 TA 1 TA 37686109 CTTTTAGATA Statistics Matches: 87, Mismatches: 8, Indels: 2 0.90 0.08 0.02 Matches are distributed among these distances: 93 1 0.01 94 86 0.99 ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39 Consensus pattern (94 bp): TATGTATGTATGTAAATGAAGGTTTCATAGATCCAATACATTTAGCATAATTCTGTTGTCCCATA CATTCTTGAGGTCTTATGCAAATTACAAA Found at i:37686326 original size:12 final size:11 Alignment explanation
Indices: 37686297--37686329 Score: 50 Period size: 12 Copynumber: 3.0 Consensus size: 11 37686287 AACTTGCAAA 37686297 TACT-TGTATG 1 TACTATGTATG 37686307 TACTATGTATG 1 TACTATGTATG 37686318 TATCTATGTATG 1 TA-CTATGTATG 37686330 CATGCATGCA Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 10 4 0.19 11 8 0.38 12 9 0.43 ACGTcount: A:0.24, C:0.09, G:0.18, T:0.48 Consensus pattern (11 bp): TACTATGTATG Found at i:37690499 original size:27 final size:27 Alignment explanation
Indices: 37690461--37690527 Score: 109 Period size: 27 Copynumber: 2.5 Consensus size: 27 37690451 TTTGGTTAAA 37690461 AATTAACCGAATT-ACACGAATTACCCG 1 AATTAACCGAATTAAC-CGAATTACCCG * 37690488 AATTAACTGAATTAACCGAATTACCCG 1 AATTAACCGAATTAACCGAATTACCCG 37690515 AATTAACCGAATT 1 AATTAACCGAATT 37690528 GAATCACTAC Statistics Matches: 37, Mismatches: 2, Indels: 2 0.90 0.05 0.05 Matches are distributed among these distances: 27 35 0.95 28 2 0.05 ACGTcount: A:0.42, C:0.22, G:0.10, T:0.25 Consensus pattern (27 bp): AATTAACCGAATTAACCGAATTACCCG Found at i:37690524 original size:9 final size:9 Alignment explanation
Indices: 37690461--37690527 Score: 91 Period size: 9 Copynumber: 7.4 Consensus size: 9 37690451 TTTGGTTAAA 37690461 AATTAACCG 1 AATTAACCG 37690470 AATT-ACACG 1 AATTAAC-CG * 37690479 AATTACCCG 1 AATTAACCG * 37690488 AATTAACTG 1 AATTAACCG 37690497 AATTAACCG 1 AATTAACCG * 37690506 AATTACCCG 1 AATTAACCG 37690515 AATTAACCG 1 AATTAACCG 37690524 AATT 1 AATT 37690528 GAATCACTAC Statistics Matches: 50, Mismatches: 6, Indels: 4 0.83 0.10 0.07 Matches are distributed among these distances: 8 2 0.04 9 47 0.94 10 1 0.02 ACGTcount: A:0.42, C:0.22, G:0.10, T:0.25 Consensus pattern (9 bp): AATTAACCG Found at i:37690650 original size:20 final size:20 Alignment explanation
Indices: 37690565--37690642 Score: 63 Period size: 20 Copynumber: 3.9 Consensus size: 20 37690555 ATAAATCTTT 37690565 GAATTTTATTTTTATTTATTA 1 GAATTTTATTTTTATTT-TTA * * 37690586 -AATTATT-TGTTTAGACTTTTA 1 GAATT-TTAT-TTT-TATTTTTA * * 37690607 GAA-TTTAGTTTTAGTTTTA 1 GAATTTTATTTTTATTTTTA 37690626 GAATTTTATTTTTATTT 1 GAATTTTATTTTTATTT 37690643 ATTAAATTGT Statistics Matches: 44, Mismatches: 7, Indels: 13 0.69 0.11 0.20 Matches are distributed among these distances: 19 9 0.20 20 21 0.48 21 9 0.20 22 5 0.11 ACGTcount: A:0.27, C:0.01, G:0.09, T:0.63 Consensus pattern (20 bp): GAATTTTATTTTTATTTTTA Found at i:37690690 original size:18 final size:18 Alignment explanation
Indices: 37690667--37690720 Score: 72 Period size: 18 Copynumber: 2.9 Consensus size: 18 37690657 AATTTTTATG 37690667 ATTGGGTTGGGTTGGGTA 1 ATTGGGTTGGGTTGGGTA * 37690685 ATTGGGTTGGGTTGGATA 1 ATTGGGTTGGGTTGGGTA * * 37690703 CTTGGGTTTGGATTGGGT 1 ATTGGG-TTGGGTTGGGT 37690721 TTAGGTGAAT Statistics Matches: 31, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 18 22 0.71 19 9 0.29 ACGTcount: A:0.11, C:0.02, G:0.46, T:0.41 Consensus pattern (18 bp): ATTGGGTTGGGTTGGGTA Found at i:37690783 original size:15 final size:17 Alignment explanation
Indices: 37690738--37690783 Score: 60 Period size: 17 Copynumber: 2.8 Consensus size: 17 37690728 AATAGTGGGC 37690738 CTATTTATATATTATAA 1 CTATTTATATATTATAA * 37690755 CTATTTATAGATTATAA 1 CTATTTATATATTATAA * 37690772 -T-TTTATTTATTA 1 CTATTTATATATTA 37690784 ATTTTTTTGA Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 15 9 0.35 16 1 0.04 17 16 0.62 ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57 Consensus pattern (17 bp): CTATTTATATATTATAA Found at i:37691482 original size:29 final size:30 Alignment explanation
Indices: 37691449--37691519 Score: 81 Period size: 29 Copynumber: 2.4 Consensus size: 30 37691439 CGTAGATTTG 37691449 GAATTTAGTTTCTATAATTTT-ATATTTTA 1 GAATTTAGTTTCTATAATTTTCATATTTTA ** * * 37691478 GAATTTAGACTCTTTACTTTTCATATTTTA 1 GAATTTAGTTTCTATAATTTTCATATTTTA * * 37691508 AAATTCAGTTTC 1 GAATTTAGTTTC 37691520 AATTGTTAAC Statistics Matches: 33, Mismatches: 8, Indels: 1 0.79 0.19 0.02 Matches are distributed among these distances: 29 17 0.52 30 16 0.48 ACGTcount: A:0.30, C:0.10, G:0.07, T:0.54 Consensus pattern (30 bp): GAATTTAGTTTCTATAATTTTCATATTTTA Found at i:37691978 original size:30 final size:30 Alignment explanation
Indices: 37691944--37692008 Score: 76 Period size: 30 Copynumber: 2.2 Consensus size: 30 37691934 TCGAATTGTG * 37691944 TAATTCATATTCGAGTTAAACCTAAAAACT 1 TAATTCATATTCGAGTTAAACCGAAAAACT ** * * * 37691974 TAATTTTTATTCGAGTTGATCCGAATAACT 1 TAATTCATATTCGAGTTAAACCGAAAAACT 37692004 TAATT 1 TAATT 37692009 AACTTAAATA Statistics Matches: 29, Mismatches: 6, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 30 29 1.00 ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40 Consensus pattern (30 bp): TAATTCATATTCGAGTTAAACCGAAAAACT Done.