Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 126 of 210
Found at i:42191065 original size:1 final size:1
Alignment explanation
Indices: 42191061--42191140 Score: 52
Period size: 1 Copynumber: 80.0 Consensus size: 1
42191051 TTCACTTTTT
* * * * * * * * *
42191061 AAAAAAGAAAAAAAGAAAAAAAAGAAAATAAAAAGAAAAAGAAAAAGAAAAAGAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
42191126 GAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAA
42191141 TAAGAGGCCA
Statistics
Matches: 55, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (1 bp):
A
Found at i:42191079 original size:6 final size:6
Alignment explanation
Indices: 42191062--42191140 Score: 87
Period size: 6 Copynumber: 13.8 Consensus size: 6
42191052 TCACTTTTTA
*
42191062 AAAAAG AAAAA- AAGAAA- AAAAAG -AAAAT AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
* *
42191108 AAAAAG -AAAAT AAAAA- AAGAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
42191141 TAAGAGGCCA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
5 17 0.27
6 46 0.73
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:42191093 original size:12 final size:11
Alignment explanation
Indices: 42191061--42191140 Score: 79
Period size: 11 Copynumber: 6.9 Consensus size: 11
42191051 TTCACTTTTT
*
42191061 AAAAAAGAAAAA
1 AAAAAA-AAAAG
42191073 AAGAAAAAAAAG
1 AA-AAAAAAAAG
*
42191085 AAAATAAAAAG
1 AAAAAAAAAAG
42191096 AAAAAGAAAAAG
1 AAAAA-AAAAAG
* *
42191108 AAAAAGAAAAT
1 AAAAAAAAAAG
*
42191119 AAAAAAAGAAG
1 AAAAAAAAAAG
42191130 AAAAAGAAAAA
1 AAAAA-AAAAA
42191141 TAAGAGGCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
11 29 0.52
12 23 0.41
13 4 0.07
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:42191095 original size:28 final size:29
Alignment explanation
Indices: 42191060--42191145 Score: 113
Period size: 31 Copynumber: 2.9 Consensus size: 29
42191050 CTTCACTTTT
42191060 TAAAAAAGAAAAAAAGAAAAAAAAGAAAA
1 TAAAAAAGAAAAAAAGAAAAAAAAGAAAA
42191089 T-AAAAAGAAAAAGAA-AAAGAAAAAGAAAA
1 TAAAAAAGAAAAA-AAGAAA-AAAAAGAAAA
*
42191118 TAAAAAAAGAAGAAAAAGAAAAATAAGA
1 T-AAAAAAGAA-AAAAAGAAAAAAAAGA
42191146 GGCCAAGGTG
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
28 14 0.28
29 14 0.28
31 16 0.32
32 6 0.12
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.05
Consensus pattern (29 bp):
TAAAAAAGAAAAAAAGAAAAAAAAGAAAA
Found at i:42191101 original size:34 final size:35
Alignment explanation
Indices: 42191062--42191145 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 35
42191052 TCACTTTTTA
42191062 AAAAAGAAAAA-AAGAAAAAAAAGAAAATAAA-AAG
1 AAAAAGAAAAAGAAGAAAAAAAAGAAAA-AAAGAAG
* *
42191096 AAAAAGAAAAAGAA-AAAGAAAATAAAAAAAGAAG
1 AAAAAGAAAAAGAAGAAAAAAAAGAAAAAAAGAAG
*
42191130 AAAAAGAAAAATAAGA
1 AAAAAGAAAAAGAAGA
42191146 GGCCAAGGTG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
33 3 0.07
34 38 0.86
35 3 0.07
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (35 bp):
AAAAAGAAAAAGAAGAAAAAAAAGAAAAAAAGAAG
Found at i:42192148 original size:44 final size:45
Alignment explanation
Indices: 42192066--42192170 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 45
42192056 TTAAACCACT
* * * * * *
42192066 AATCTTATCCCCCTGAAGTTGCACTGGGGCAGATTGAAGATA-C-
1 AATCTTATCTCCTTGAAGTTACACTGGAGCAAACTGAAGATAGCG
*
42192109 AAGTCTTATCTCCTTGAAGTTACAGTGGAGCAAACTGAAGATAGCG
1 AA-TCTTATCTCCTTGAAGTTACACTGGAGCAAACTGAAGATAGCG
*
42192155 AATCTTATTTCCTTGA
1 AATCTTATCTCCTTGA
42192171 TGTTGTAGTG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
43 2 0.04
44 33 0.65
45 14 0.27
46 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (45 bp):
AATCTTATCTCCTTGAAGTTACACTGGAGCAAACTGAAGATAGCG
Found at i:42192193 original size:45 final size:44
Alignment explanation
Indices: 42192068--42192193 Score: 110
Period size: 44 Copynumber: 2.8 Consensus size: 44
42192058 AAACCACTAA
* * * * **
42192068 TCTTATCCCCCTGAAGTTGCACTGGGGCAGATTGAAGATACAAG
1 TCTTATCTCCTTGAAGTTACAGTGGAACAGATTGAAGATACAAG
* * *
42192112 TCTTATCTCCTTGAAGTTACAGTGGAGCAAACTGAAGATAGCGAA-
1 TCTTATCTCCTTGAAGTTACAGTGGAACAGATTGAAGATA-C-AAG
* * **
42192157 TCTTATTTCCTTGATGTTGTAGTGGAACAGATTGAAG
1 TCTTATCTCCTTGAAGTTACAGTGGAACAGATTGAAG
42192194 CTATAAATTA
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
44 33 0.50
45 31 0.47
46 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCTTGAAGTTACAGTGGAACAGATTGAAGATACAAG
Found at i:42192272 original size:44 final size:43
Alignment explanation
Indices: 42192209--42193011 Score: 397
Period size: 44 Copynumber: 17.8 Consensus size: 43
42192199 AATTACAGAT
* * *
42192209 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGGAATAACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAATAACAAAC
* *** * * *
42192253 CTTATCTCCCTAAAGTTGCAACAGAGAAGGTTGAAGAT-ACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA-ATAACAAAC
* * * *
42192297 CTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATAAATTATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA---AT-AA-CA-A-AC
* * * *
42192348 CTTATCTCTCTGAAGTTGCAGTAGAGCA-G--ACCATATCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTA-AATAACAAAC
* * * **
42192389 CTTATATCTCTGAAATTGCAGTAAAGCAGGTTAAA-AACAAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAATAACAAA-C
* * * * * *
42192432 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGACAGGCTACGAAT
1 ---CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA-ATA----ACAAAC
* * ** **
42192484 CTTATCTCCCTAAAGTTGCAGTGGAGTATATTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAA-TAACAAAC
* * *
42192528 CTTATCTCTCTGAAGTTGTAGTAGAGCAGGTTTAAATAACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAATAACAAAC
* *
42192572 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAT-ACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA-ATAACAAAC
* * * * * *
42192616 CTTATCTCCTTGAAGTTACAGTGGAGCATGTTAAAGATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAATA-ACAAAC
* * * *
42192660 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAATC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAATAA-CAAAC
* * * * **
42192705 C-TATAC-CTCTGAAGTTGCAGTAGTTGCAGTGAGACAGTTCGAAATCACGAGT
1 CTTAT-CTCCCTGAAGTTGCAGT-G--G-AG-CAG---GTT--AAATAACAAAC
* ** *
42192757 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAA-ACCACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAATA--ACAAAC
* * **
42192801 CTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAA-TAACAAAC
* *
42192845 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAATAACAAAC
* * * * *
42192889 CCTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGAT-ACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA-ATAACAAAC
* * * *
42192933 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT-ACTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AA-ATAACAAAC
*
42192977 CGTATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAA
42193012 ATGATGAATG
Statistics
Matches: 594, Mismatches: 115, Indels: 102
0.73 0.14 0.13
Matches are distributed among these distances:
41 26 0.04
42 8 0.01
43 13 0.02
44 387 0.65
45 25 0.04
46 26 0.04
47 5 0.01
48 9 0.02
49 36 0.06
50 2 0.00
51 27 0.05
52 6 0.01
53 24 0.04
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAATAACAAAC
Found at i:42192884 original size:317 final size:316
Alignment explanation
Indices: 42192209--42193160 Score: 1228
Period size: 317 Copynumber: 3.0 Consensus size: 316
42192199 AATTACAGAT
* *
42192209 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGGAATAACAAACCTTATCTCCCTAAAGTTGCAA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
* *
42192274 CAGAGAAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCTATAA
66 TAGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG--AT--
* * * ** * * *
42192339 ATTATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACCATATCA--AA-CCTTATATCTCTG
127 A--CTA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACATGAATCC-TATACCTCTG
* ** * ** *
42192401 AAATTGCAGTA-AAGCAGGTTA-A-A-AAC-AAATCA--A-TCTTATCTCCCTAAAGTTGCAGTG
188 AAGTTGCAGTAGTTGCA-GTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTG
* * * * * *
42192458 GAGTAGATTGAAGACAGGCTACGAATCTTATCTCCCTAAAGTTGCAGTGGAGTATATTAAAGCCA
252 GAGTAGATT-AA-A-A--CCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA
42192523 CAAAC
312 CAAAC
* * *
42192528 CTTATCTCTCTGAAGTTGTAGTAGAGCAGGTTTAAATAACAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
* * * *
42192593 TGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTACAGTGGAGCATG-TTAAAGATACC
66 TAGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCA-GATTGAAGATACT
42192657 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGTTG
130 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAC-ATGAATCCTATACCTCTGAAGTTG
* *
42192722 CAGTAGTTGCAGTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGA
194 CAGTAGTTGCAGTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGA
*
42192787 CTAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
259 TTAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
*
42192845 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCCTATCTCCCTAAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
* *
42192910 TAGAGCAGGTTGAAGATACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTA
66 TAGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACTA
* * * * *
42192975 ATCGTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATGATGAATGCTATACCTCTAAAGTTGC
131 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CATGAATCCTATACCTCTGAAGTTGC
* *
42193040 AGTAGTTGCAGTGAGGCAGTTTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGAT
195 AGTAGTTGCAGTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGAT
* *
42193105 TAAAACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGCAGACT-AAGACCACAAA
260 TAAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CCACAAA
42193161 TCTCGTCCCC
Statistics
Matches: 560, Mismatches: 57, Indels: 34
0.86 0.09 0.05
Matches are distributed among these distances:
312 33 0.06
313 2 0.00
315 25 0.04
316 10 0.02
317 336 0.60
318 1 0.00
319 119 0.21
320 2 0.00
321 3 0.01
322 29 0.05
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (316 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATAACAAACCTTATCTCCCTAAAGTTGCAG
TAGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGATACTA
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACATGAATCCTATACCTCTGAAGTTGCA
GTAGTTGCAGTGAGACAGTTCGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATT
AAAACCACAAATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
Found at i:42192948 original size:229 final size:229
Alignment explanation
Indices: 42192528--42192954 Score: 511
Period size: 229 Copynumber: 1.9 Consensus size: 229
42192518 AGCCACAAAC
* ** * * *
42192528 CTTATCTCTCTGAAGTTGTAGTAGAGCAGGTTTAAATAACAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGTAGTAGAGCAGACTAAAACAACAAACCTTATCCCCCTGAAGTTGCAG
* * * * * * * *
42192593 TGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTACAGTGGAGCATGTTAAAGATACCA
66 TGGAGCAGATTAAAGACACAAACCTTATCTCCTTGAAGTTACAGTAGAGCAGGTTAAAGATACAA
* * * * ** *
42192658 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGTTGC
131 ACCCTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAACAACCAATCCTATACCCCTGAAGTTGC
42192723 AGTAGTTGCAGTGAGACAGTTCGAAATCACGAGT
196 AGTAGTTGCAGTGAGACAGTTCGAAATCACGAGT
* * *
42192757 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGTAGTAGAGCAGACTAAAACAACAAACCTTATCCCCCTGAAGTTGCAG
* * *
42192822 TGGAGCAGATTAAAGCCACAAACCTTATCT-CTCTGAAGTTGCAGTAGAGCAGGTTGAA-ATAAC
66 TGGAGCAGATTAAAGACACAAACCTTATCTCCT-TGAAGTTACAGTAGAGCAGGTTAAAGAT-AC
* * * *
42192885 AAACCCTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGA-TACCAATCTTAT-CTCCCTGAAG
129 AAACCCTATCTCCCTAAAGTTGCAGTAGAGCAGATT-AAAACAACCAATCCTATAC-CCCTGAAG
42192948 TTGCAGT
192 TTGCAGT
42192955 GGAGCAGATT
Statistics
Matches: 163, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
228 5 0.03
229 155 0.95
230 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (229 bp):
CTTATCTCCCTGAAGTTGTAGTAGAGCAGACTAAAACAACAAACCTTATCCCCCTGAAGTTGCAG
TGGAGCAGATTAAAGACACAAACCTTATCTCCTTGAAGTTACAGTAGAGCAGGTTAAAGATACAA
ACCCTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAACAACCAATCCTATACCCCTGAAGTTGC
AGTAGTTGCAGTGAGACAGTTCGAAATCACGAGT
Found at i:42192992 original size:273 final size:273
Alignment explanation
Indices: 42192478--42192998 Score: 699
Period size: 273 Copynumber: 1.9 Consensus size: 273
42192468 AAGACAGGCT
* * * * * *
42192478 ACGAATCTTATCTCCCTAAAGTTGCAGTGGAGTATATTAAAGCCACAAACCTTATCTCTCTGAAG
1 ACGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCACAAACCTTATCCCCCTGAAG
* * * *
42192543 TTGTAGTAGAGCAGGTTTAAATAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG
66 TTGCAGTAGAGCAGGATTAAACAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG
* * * * * * *
42192608 ATACCAATCTTATCTCCTTGAAGTTACAGTGGAGCATGTTAAAGATACCAATCTTATCTCCCTGA
131 ATACAAACCCTATCTCCCTAAAGTTACAGTAGAGCAGGTTAAAGATACCAATCTTATCTCCCTGA
*
42192673 AGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCTCTGAAGTTGCAGTAGTTGCAGTGAG
196 AGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCCCTGAAGTTGCAGTAGTTGCAGTGAG
42192738 ACAGTTCGAAATC
261 ACAGTTCGAAATC
* * * *
42192751 ACGAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAACCACAAATCTTATCCCCCTGAAG
1 ACGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCACAAACCTTATCCCCCTGAAG
* * *
42192816 TTGCAGTGGAGCA-GATTAAAGCCACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAA
66 TTGCAGTAGAGCAGGATTAAA-CAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAA
* *
42192880 -ATAACAAACCCTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGATACCAATCTTATCTCCCT
130 GAT-ACAAACCCTATCTCCCTAAAGTTACAGTAGAGCAGGTTAAAGATACCAATCTTATCTCCCT
* * * *
42192944 GAAGTTGCAGTGGAGCAGATTGAAGCTACT-AATCGTAT-CTCCCTGAAGTTGCAGT
194 GAAGTTGCAGTGGAGCAGATTAAAAC-AATGAATCCTATAC-CCCTGAAGTTGCAGT
42192999 GGAGCGGATT
Statistics
Matches: 213, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
272 9 0.04
273 202 0.95
274 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (273 bp):
ACGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCACAAACCTTATCCCCCTGAAG
TTGCAGTAGAGCAGGATTAAACAACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG
ATACAAACCCTATCTCCCTAAAGTTACAGTAGAGCAGGTTAAAGATACCAATCTTATCTCCCTGA
AGTTGCAGTGGAGCAGATTAAAACAATGAATCCTATACCCCTGAAGTTGCAGTAGTTGCAGTGAG
ACAGTTCGAAATC
Found at i:42193034 original size:132 final size:136
Alignment explanation
Indices: 42192798--42193146 Score: 372
Period size: 132 Copynumber: 2.6 Consensus size: 136
42192788 TAAAACCACA
* * *
42192798 AATCTTATCCCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATC-TATCTCCCTGAAGTTG
* *
42192863 CAGTAGAGCAGGTTGAAATAACAAACCCTATCTCCCTAAAGTTGC-AG-T-A-GA-GCAGGTTGA
65 CAGTGGAGCAGGTTAAAATAACAAACCCTATCTCCCTAAAGTTGCAAGTTCAGGAGGCAGGTTGA
42192923 AGAT-ACC
130 A-ATCACC
* * *
42192930 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACTAATCGTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATC-TATCTCCCTGAAGTTG
* ** ** *
42192995 CAGTGGAGC-GGATTAAAATGATGAATGCTATAC-CTCTAAAGTTGCAGTAGTTGCAGTGAGGCA
65 CAGTGGAGCAGG-TTAAAATAACAAACCCTAT-CTCCCTAAAGTTGCA--AGTT-CAG-GAGGCA
* *
42193058 GTTTGAAATCACG
124 GGTTGAAATCACC
* * * *
42193071 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAATCTCATCCCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATCT-ATCTCCCTGAAGTTG
42193136 CAGTGGAGCAG
65 CAGTGGAGCAG
42193147 ACTAAGACCA
Statistics
Matches: 179, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
131 2 0.01
132 90 0.50
133 1 0.01
135 2 0.01
136 1 0.01
138 1 0.01
140 5 0.03
141 76 0.42
142 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (136 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAATCTATCTCCCTGAAGTTGC
AGTGGAGCAGGTTAAAATAACAAACCCTATCTCCCTAAAGTTGCAAGTTCAGGAGGCAGGTTGAA
ATCACC
Found at i:42193049 original size:229 final size:229
Alignment explanation
Indices: 42192814--42193226 Score: 478
Period size: 229 Copynumber: 1.8 Consensus size: 229
42192804 ATCCCCCTGA
* *
42192814 AGTTGCAGTG-GAGCAGATT-AAAGCCACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTT
1 AGTTGCAGTGAG-GCAGATTGAAA-CCACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT
* * * ** * * *
42192877 GAAATAACAAACC-CTATCTCCCTAAAGTTGCAGTAGAGCAGGTTGAAGA-TACCAATCTTATCT
64 AAAACAACAAACCTC-ATCCCCCTAAAGTTGCAGTAGAGCAGACT-AAGACCACAAATCTCATC-
* *
42192940 CCCTGAAGTTG-CAGTGGAGCAGATTGAAGCTACTAA-TCGTATCTCCCTGAAGTTGCAGTGGAG
126 CCCTGAAGTTGTCAGTAGAGCAGACTGAAGCTA-TAAGTCGTATCTCCCTGAAGTTGCAGTGGAG
42193003 CGGATTAAAATGATGAATGCTATACCTCTAAAGTTGCAGT
190 CGGATTAAAATGATGAATGCTATACCTCTAAAGTTGCAGT
* * * ** * *
42193043 AGTTGCAGTGAGGCAGTTTGAAATCACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAA
1 AGTTGCAGTGAGGCAGATTGAAACCACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAA
* * * * *
42193108 AACCACAAATCTCATCCCCCTGAAGTTGCAGTGGAGCAGACTAAGACCACAAATCTCGTCCCCTG
66 AACAACAAACCTCATCCCCCTAAAGTTGCAGTAGAGCAGACTAAGACCACAAATCTCATCCCCTG
** * *
42193173 AAGTTGTGGGTAGAGTAGACTGAAGCTATAAGTCGTATCTCTCTGAAGTTGCAG
131 AAGTTGTCAGTAGAGCAGACTGAAGCTATAAGTCGTATCTCCCTGAAGTTGCAG
42193227 CGAAGTGAAT
Statistics
Matches: 150, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
228 18 0.12
229 127 0.85
230 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (229 bp):
AGTTGCAGTGAGGCAGATTGAAACCACAAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAA
AACAACAAACCTCATCCCCCTAAAGTTGCAGTAGAGCAGACTAAGACCACAAATCTCATCCCCTG
AAGTTGTCAGTAGAGCAGACTGAAGCTATAAGTCGTATCTCCCTGAAGTTGCAGTGGAGCGGATT
AAAATGATGAATGCTATACCTCTAAAGTTGCAGT
Found at i:42193129 original size:44 final size:43
Alignment explanation
Indices: 42193081--42193178 Score: 151
Period size: 44 Copynumber: 2.3 Consensus size: 43
42193071 AGTCTTATCT
* *
42193081 CCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAATCTCATCC
1 CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCAT-C
* *
42193125 CCCTGAAGTTGCAGTGGAGCAGACTAAGACCACAAATCTCGTC
1 CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCATC
42193168 CCCTGAAGTTG
1 CCCTGAAGTTG
42193179 TGGGTAGAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 12 0.24
44 38 0.76
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (43 bp):
CCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAATCTCATC
Found at i:42193193 original size:44 final size:44
Alignment explanation
Indices: 42193081--42193193 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
42193071 AGTCTTATCT
* *
42193081 CCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAATCTCATCC
1 CCCTGAAGTTGCAGTAGAGTAGACTAAAACCACAAATCTCATCC
* * * *
42193125 CCCTGAAGTTGCAGTGGAGCAGACTAAGACCACAAATCTCGT-C
1 CCCTGAAGTTGCAGTAGAGTAGACTAAAACCACAAATCTCATCC
**
42193168 CCCTGAAGTTGTGGGTAGAGTAGACT
1 CCCTGAAGTTG-CAGTAGAGTAGACT
42193194 GAAGCTATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 12 0.20
44 48 0.80
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTAGAGTAGACTAAAACCACAAATCTCATCC
Found at i:42195014 original size:41 final size:41
Alignment explanation
Indices: 42194956--42195064 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 41
42194946 CCTGATTGAA
* *
42194956 TTCACCGGCAATT-AGCCTGCTAGACTTAAAGTCCGAGTTAT
1 TTCACCGGC-ATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
* *
42194997 TTCACCGGCATTAAGCCTGCTGGACATAAAGTCCGAATTAC
1 TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
* * *
42195038 ATCACTGGCCTTAAGCCTGCTAGACTT
1 TTCACCGGCATTAAGCCTGCTAGACTT
42195065 TAAGCCTGAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 3 0.05
41 55 0.95
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (41 bp):
TTCACCGGCATTAAGCCTGCTAGACTTAAAGTCCGAATTAC
Found at i:42197411 original size:22 final size:24
Alignment explanation
Indices: 42197366--42197411 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
42197356 TCTTAAATTG
* *
42197366 TTTTATACAATATTTAATTGTTTA
1 TTTTATACAATATTTAAGTCTTTA
42197390 TTTT-TACAATA-TTAAGTCTTTA
1 TTTTATACAATATTTAAGTCTTTA
42197412 GCTTTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 7 0.35
24 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTATACAATATTTAAGTCTTTA
Found at i:42203287 original size:4 final size:4
Alignment explanation
Indices: 42203280--42203305 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
42203270 TATTTGAATG
42203280 ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT
42203306 TTAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:42213647 original size:29 final size:31
Alignment explanation
Indices: 42213575--42213650 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 31
42213565 AGTATAGAAA
* * *
42213575 TGGTCACTAAAGTATTGATTGTATTCTCTTT
1 TGGTCACTAAACTATTAATTGTATTCTATTT
* * *
42213606 TGGTTACTGAACTTTTAATT-T-TTCTATTT
1 TGGTCACTAAACTATTAATTGTATTCTATTT
42213635 TGGTCACTAAACTATT
1 TGGTCACTAAACTATT
42213651 CAAATTCAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 20 0.56
30 1 0.03
31 15 0.42
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (31 bp):
TGGTCACTAAACTATTAATTGTATTCTATTT
Found at i:42215655 original size:161 final size:163
Alignment explanation
Indices: 42215385--42215870 Score: 714
Period size: 164 Copynumber: 3.0 Consensus size: 163
42215375 CAATCATTGT
* * * * * *
42215385 GTTGTTGTATCTTAGGAGACAGTCGATCAATATTTCTCCGAGTACCTTAGGAGCGGCCGAATTTG
1 GTTGTTGTATCCTAGGAGACAGTCGACCAATGTTTCTCCAAGTACCTTAGAAGCGGTCGAATTTG
* *
42215450 T-TTCAAGGAAACTGTGTAAAACA-AGCCTCAACATCTAGTAAAACTCAATTCTTCTTTTAGATT
66 TCTT-AAGGAAACTGTGTAAAACAGA-CCTCAACATCTAATAAAACTCGATTCTTCTTTTAGATT
*
42215513 TTTGGTTTTCGTTATGTTATTTATTGGTTTTTCA-
129 TCTGGTTTTCGTTATGTTATTTATTGGTTTTTCAG
*
42215547 G-TGTTGTATCCTAGGAGACAGTCGACCAACGTTTCTCCAAGTACCTTAGAAGCGGTCGAATTTG
1 GTTGTTGTATCCTAGGAGACAGTCGACCAATGTTTCTCCAAGTACCTTAGAAGCGGTCGAATTTG
*
42215611 TCTTAAGGAAACTGTGTAAAACAGACCTCATCATCTAATAAAACTCGATTCTTCTTTTCA-ATTT
66 TCTTAAGGAAACTGTGTAAAACAGACCTCAACATCTAATAAAACTCGATTCTTCTTTT-AGATTT
42215675 CTGGTTTTCGTTATGTTATTTATTGGTTTTTCAG
130 CTGGTTTTCGTTATGTTATTTATTGGTTTTTCAG
*
42215709 TGTTGTTGTATCCTAGGAGACAGTCGACCAATGCTTCTCCAAGTACCTTAGGAA-CGGTCGAATT
1 -GTTGTTGTATCCTAGGAGACAGTCGACCAATGTTTCTCCAAGTACCTTA-GAAGCGGTCGAATT
* * *
42215773 TGTCTTAAGGAAACTGTGTAAAACAGGCCTCAACATCTAATAAAACTCGTTTCTTCTTTTTGATT
64 TGTCTTAAGGAAACTGTGTAAAACAGACCTCAACATCTAATAAAACTCGATTCTTCTTTTAGATT
* * * *
42215838 TCTAGTTTTTGTTATATTATTTATTAGTTTTTC
129 TCTGGTTTTCGTTATGTTATTTATTGGTTTTTC
42215871 GTATCTGATA
Statistics
Matches: 295, Mismatches: 21, Indels: 14
0.89 0.06 0.04
Matches are distributed among these distances:
161 142 0.48
162 5 0.02
163 1 0.00
164 144 0.49
165 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (163 bp):
GTTGTTGTATCCTAGGAGACAGTCGACCAATGTTTCTCCAAGTACCTTAGAAGCGGTCGAATTTG
TCTTAAGGAAACTGTGTAAAACAGACCTCAACATCTAATAAAACTCGATTCTTCTTTTAGATTTC
TGGTTTTCGTTATGTTATTTATTGGTTTTTCAG
Found at i:42215911 original size:5 final size:5
Alignment explanation
Indices: 42215895--42215923 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
42215885 AATATAAATT
42215895 ATTTA A-TTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA
42215924 TATATCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:42226750 original size:43 final size:43
Alignment explanation
Indices: 42226689--42226775 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
42226679 CAATGATGTA
* * **
42226689 CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTAC
1 CAAGATTTACTTGATTAAGAAAATACATTATATCTTTTATTAC
* *
42226732 CAAGATTTACTTGATTAAGAAAATACATTGTATGTTTTATTAC
1 CAAGATTTACTTGATTAAGAAAATACATTATATCTTTTATTAC
42226775 C
1 C
42226776 TTGCATATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
CAAGATTTACTTGATTAAGAAAATACATTATATCTTTTATTAC
Found at i:42226899 original size:35 final size:34
Alignment explanation
Indices: 42226860--42226925 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
42226850 TAATTGTGTT
*
42226860 ATTAATTTATTAT-TTTAAATTCTAAATTTAAATTC
1 ATTAATTT-TTATATTT-AATTCTAAAGTTAAATTC
*
42226895 ATTAATTTTTATATTTAATTTTAAAGTTAAA
1 ATTAATTTTTATATTTAATTCTAAAGTTAAA
42226926 ATTTTCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (34 bp):
ATTAATTTTTATATTTAATTCTAAAGTTAAATTC
Found at i:42226928 original size:35 final size:35
Alignment explanation
Indices: 42226860--42226928 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
42226850 TAATTGTGTT
*
42226860 ATTAATTTATTATTTTAAATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
*
42226895 ATTAATTT-TTATATTT-AATTTTAAAGTTAAAATT
1 ATTAATTTATTAT-TTTAAATTCTAAA-TTAAAATT
42226929 TTCATAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (35 bp):
ATTAATTTATTATTTTAAATTCTAAATTAAAATTC
Found at i:42227882 original size:26 final size:26
Alignment explanation
Indices: 42227860--42227927 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
42227850 TTGTAAATTC
* *
42227860 CAAATAATAAAAGTATTTTTAAATAT
1 CAAATAATAAAAATATTATTAAATAT
42227886 CAAATAATAAAAATATTATTAAATAT
1 CAAATAATAAAAATATTATTAAATAT
42227912 CAAATAATAATAAATA
1 CAAATAATAA-AAATA
42227928 AAAATAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 34 0.87
27 5 0.13
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (26 bp):
CAAATAATAAAAATATTATTAAATAT
Found at i:42228837 original size:40 final size:40
Alignment explanation
Indices: 42228762--42228837 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
42228752 TTAGTTTGAA
* **
42228762 ATAAATATTTAATTAGATAAACATAAATTTTAAAAACTAG
1 ATAAATATTTAATTAGATAAACAAAAATTAAAAAAACTAG
* *
42228802 ATAAATGTTTAATTAGATAAATAAAAATTAAAAAAA
1 ATAAATATTTAATTAGATAAACAAAAATTAAAAAAA
42228838 ATGTTAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (40 bp):
ATAAATATTTAATTAGATAAACAAAAATTAAAAAAACTAG
Found at i:42236582 original size:12 final size:12
Alignment explanation
Indices: 42236565--42236589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42236555 GGTGTTCATT
42236565 CGGTTAACCGAC
1 CGGTTAACCGAC
42236577 CGGTTAACCGAC
1 CGGTTAACCGAC
42236589 C
1 C
42236590 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:42236763 original size:9 final size:9
Alignment explanation
Indices: 42236749--42236811 Score: 81
Period size: 9 Copynumber: 6.9 Consensus size: 9
42236739 TTTGGTTAAA
42236749 AATTACCCG
1 AATTACCCG
42236758 AATTACCCG
1 AATTACCCG
42236767 AATTACCCG
1 AATTACCCG
*
42236776 AATTAACCG
1 AATTACCCG
**
42236785 AATTACCTAA
1 AATTACC-CG
*
42236795 AAATACCCG
1 AATTACCCG
42236804 AATTACCC
1 AATTACCC
42236812 AAAAATTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
9 39 0.87
10 6 0.13
ACGTcount: A:0.40, C:0.30, G:0.08, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:42237350 original size:56 final size:50
Alignment explanation
Indices: 42237275--42237470 Score: 171
Period size: 50 Copynumber: 3.8 Consensus size: 50
42237265 ACATTAGGGG
* * *
42237275 GATGAGA--TCCCATGTAAGACCATGTATGGGACATGGCATTAACATTATTGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACA-CA--GA
* *
42237326 GGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGACACAGA
1 -G--ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACACAGA
* *** *
42237379 GATGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACACAGA
* ** * * * *
42237429 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATT
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATT
42237471 GGCAGTATAG
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
50 77 0.64
52 2 0.02
53 2 0.02
54 6 0.05
55 1 0.01
56 33 0.27
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAACACAGA
Found at i:42237388 original size:50 final size:50
Alignment explanation
Indices: 42237330--42237461 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 50
42237320 TATTGAGGTT
* *
42237330 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGACACAGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGACACAGAG
* * * *
42237380 ATGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGACACAGAG
** * *
42237430 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGA
42237462 TATGACATTG
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGACACAGAG
Found at i:42237508 original size:49 final size:49
Alignment explanation
Indices: 42237329--42237514 Score: 164
Period size: 50 Copynumber: 3.8 Consensus size: 49
42237319 TTATTGAGGT
** * * * * *
42237329 TATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGACACAGA
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGACATGGGCAC-GA
* ** *
42237379 GATGAGAGGTCCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGAACTCCCAT-GTAAGACCATGTCTGGGACATGACATGGGCA-CGA
* * *
42237429 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGCA-G-
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGACATGGGCACGA
42237476 TAT-AGGAACCATCCCATGTAAGACCATGTCTGGGACATG
1 TATGA-GAA-C-TCCCATGTAAGACCATGTCTGGGACATG
42237515 CTTTGGCATG
Statistics
Matches: 116, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
46 1 0.01
47 6 0.05
48 2 0.02
49 26 0.22
50 79 0.68
51 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGACATGGGCACGA
Found at i:42238663 original size:123 final size:123
Alignment explanation
Indices: 42238444--42238776 Score: 612
Period size: 123 Copynumber: 2.7 Consensus size: 123
42238434 GTTTCTGATG
* * *
42238444 AAATAGTATAAAATCGCTTTTAGCAGGATGCTTTTTGAGAAGAATTTGTGAAATTACGGCCTCGT
1 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGGCCTCGT
42238509 GGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTACTTTTTTGACC
66 GGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTACTTTTTTGACC
42238567 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGGCCTCGT
1 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGGCCTCGT
42238632 GGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTACTTTTTTGACC
66 GGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTACTTTTTTGACC
*
42238690 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCGCGGCCTCGT
1 AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGGCCTCGT
* *
42238755 GGGCGCGCATTTGCTACAGTAG
66 GGACGCGCTTTTGCTACAGTAG
42238777 CATGTTTGGG
Statistics
Matches: 204, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
123 204 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (123 bp):
AAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCACGGCCTCGT
GGACGCGCTTTTGCTACAGTAGGTCATGTAAGAAATATTTTTTTTTACTTTTTTGACC
Found at i:42242142 original size:19 final size:19
Alignment explanation
Indices: 42242116--42242224 Score: 106
Period size: 19 Copynumber: 5.8 Consensus size: 19
42242106 ACTCAAATTA
42242116 TATAAAATTAT-AAATGGT
1 TATAAAATTATCAAATGGT
42242134 TAGTAAAATTATCAAAT--T
1 TA-TAAAATTATCAAATGGT
*
42242152 ATATAAAATTAT-TAATGGT
1 -TATAAAATTATCAAATGGT
*
42242171 TAGCAAAATTATCAAAT--T
1 TA-TAAAATTATCAAATGGT
42242189 ATATAAAATTAT-AAATGGT
1 -TATAAAATTATCAAATGGT
42242208 TACTAAAATTATCAAAT
1 TA-TAAAATTATCAAAT
42242225 TATATAAAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
17 7 0.09
18 25 0.33
19 32 0.43
20 11 0.15
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (19 bp):
TATAAAATTATCAAATGGT
Found at i:42242150 original size:37 final size:37
Alignment explanation
Indices: 42242108--42242235 Score: 229
Period size: 37 Copynumber: 3.5 Consensus size: 37
42242098 TTGTATTAAC
42242108 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
* *
42242145 TCAAATTATATAAAATTATTAATGGTTAGCAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
*
42242182 TCAAATTATATAAAATTATAAATGGTTACTAAAATTA
1 TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
42242219 TCAAATTATATAAAATT
1 TCAAATTATATAAAATT
42242236 GGGTTAGGGT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (37 bp):
TCAAATTATATAAAATTATAAATGGTTAGTAAAATTA
Found at i:42242271 original size:29 final size:29
Alignment explanation
Indices: 42242231--42242496 Score: 399
Period size: 29 Copynumber: 9.2 Consensus size: 29
42242221 AAATTATATA
*
42242231 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
42242260 AAGTTAAGTTAGAGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
42242289 AAGTTTGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
42242318 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* * *
42242347 AAGTTTGGATAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
* *
42242376 GAATT-GAGTTAAGGTTAGGGTTTTTAATT
1 AAATTAG-GTTAGGGTTAGGGTTTTTAATT
42242405 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
42242434 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
42242463 AAATTAGGTTAGGGTTAGGGTTTTTAATT
1 AAATTAGGTTAGGGTTAGGGTTTTTAATT
42242492 AAATT
1 AAATT
42242497 NNNNNNNNNN
Statistics
Matches: 215, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
28 1 0.00
29 213 0.99
30 1 0.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (29 bp):
AAATTAGGTTAGGGTTAGGGTTTTTAATT
Found at i:42245267 original size:22 final size:22
Alignment explanation
Indices: 42245242--42245297 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
42245232 AAATATGGAT
*
42245242 TTGAGAGAATTTCGGAAGGAAA
1 TTGAGAGAATTTCGGAAAGAAA
* *
42245264 TTGAGGGAATTTTGGAAAGAAA
1 TTGAGAGAATTTCGGAAAGAAA
42245286 TTGAGAGGAATT
1 TTGAGA-GAATT
42245298 GAGAGGAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 24 0.83
23 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.32, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTCGGAAAGAAA
Found at i:42245314 original size:12 final size:11
Alignment explanation
Indices: 42245282--42245314 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
42245272 ATTTTGGAAA
42245282 GAAATTGAGAG
1 GAAATTGAGAG
42245293 G-AATTGAGAG
1 GAAATTGAGAG
42245303 GAAATATGAGAG
1 GAAAT-TGAGAG
42245315 AGGATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.18
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:42265656 original size:20 final size:22
Alignment explanation
Indices: 42265617--42265657 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
42265607 TGATTTAATT
*
42265617 TATTAAATTTATTGAATTTAAC
1 TATTAAATTTATTAAATTTAAC
42265639 TATT-AATTT-TTAAATTTAA
1 TATTAAATTTATTAAATTTAA
42265658 TGTTAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAAATTTATTAAATTTAAC
Found at i:42266015 original size:16 final size:15
Alignment explanation
Indices: 42265977--42266007 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
42265967 GTATTACAAA
42265977 TATATTTAAATTTTC
1 TATATTTAAATTTTC
42265992 TATATTTAAATTTTC
1 TATATTTAAATTTTC
42266007 T
1 T
42266008 TTTATTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATATTTAAATTTTC
Found at i:42266081 original size:3 final size:3
Alignment explanation
Indices: 42266073--42266114 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
42266063 TTACCTAAAC
42266073 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
42266115 TTGTTGTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:42266867 original size:6 final size:6
Alignment explanation
Indices: 42266843--42266877 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
42266833 GATGAATGTT
42266843 ATTTATA ATTTTAA ATTTTA ATTTTA ATTTTA ATT
1 ATTT-TA ATTTT-A ATTTTA ATTTTA ATTTTA ATT
42266878 GGTATAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.63
7 10 0.37
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
ATTTTA
Found at i:42267136 original size:2 final size:2
Alignment explanation
Indices: 42267129--42267161 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
42267119 CTCACGCTTT
42267129 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42267162 GAGGGGGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:42269282 original size:23 final size:22
Alignment explanation
Indices: 42268551--42269292 Score: 192
Period size: 23 Copynumber: 31.9 Consensus size: 22
42268541 NACAGCACTT
* *
42268551 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42268576 ATACA-AAATTAGACAGCATTT
1 ATACACAAATTGGACAGCATAA
* *
42268597 ATTCACCAAAATTTGG-CAGCATAT
1 ATACA-C-AAA-TTGGACAGCATAA
* * *
42268621 ATATACAAATTTGAACAGCACT-T
1 ATACACAAA-TTGGACAGCA-TAA
* *
42268644 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42268669 ATACA-AAATTAGACAGCATTT
1 ATACACAAATTGGACAGCATAA
* *
42268690 ATTCACCAAAATTTGG-CAGCATAT
1 ATACA-C-AAA-TTGGACAGCATAA
* **
42268714 ATATACAAATTTGGACAGCATTT
1 ATACACAAA-TTGGACAGCATAA
* *
42268737 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
**
42268762 ATACA-AAATTGGACAGCATTT
1 ATACACAAATTGGACAGCATAA
* *
42268783 ATTCACCGAAATTGGGCAGCATACA
1 ATACA-C-AAATTGGACAGCATA-A
* *
42268808 TATAC-CAACTTGGACAGCACT-T
1 -ATACACAAATTGGACAGCA-TAA
* *
42268830 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42268855 ATATA-AAATTGGACAGCATTT
1 ATACACAAATTGGACAGCATAA
*
42268876 ATTCAGCAAAATTGGACAGCATACA
1 ATACA-C-AAATTGGACAGCATA-A
* *
42268901 TATAC-CAATTTGGACAGCACT-T
1 -ATACACAAATTGGACAGCA-TAA
* *
42268923 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42268948 ATATA-AAATTGGACAGCATTT
1 ATACACAAATTGGACAGCATAA
*
42268969 ATTCAGCAAAATTGGACAGCATACA
1 ATACA-C-AAATTGGACAGCATA-A
* *
42268994 TATAC-CAATTTGGACAGCACT-T
1 -ATACACAAATTGGACAGCA-TAA
* *
42269016 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42269041 ATATA-AAATTGGACAGCATTT
1 ATACACAAATTGGACAGCATAA
*
42269062 ATTCAGCAAAATTGGACAGCATACA
1 ATACA-C-AAATTGGACAGCATA-A
* *
42269087 TATAC-CAATTTGGACAGCACT-T
1 -ATACACAAATTGGACAGCA-TAA
* *
42269109 ATACACAAAATTTGACAGCATGTAT
1 ATACAC-AAATTGGACAGCA--TAA
* **
42269134 ATATA-AAATTGGACAGCATTT
1 ATACACAAATTGGACAGCATAA
*
42269155 ATTCAGCAAAATTGGACAGCATACA
1 ATACA-C-AAATTGGACAGCATA-A
* *
42269180 TATAC-CAATTTGGACAGCACT-T
1 -ATACACAAATTGGACAGCA-TAA
* **
42269202 ATACACAAAATTTGACAGCATTT
1 ATACAC-AAATTGGACAGCATAA
* **
42269225 ATAAACAAAATTGGACAGCATTT
1 ATACAC-AAATTGGACAGCATAA
*
42269248 ATTCACCAAAATTGGACAGCATAA
1 ATACA-C-AAATTGGACAGCATAA
*
42269272 ATACCACAAATTGGGCAGCAT
1 ATA-CACAAATTGGACAGCAT
42269293 TTAAGCATAA
Statistics
Matches: 554, Mismatches: 95, Indels: 138
0.70 0.12 0.18
Matches are distributed among these distances:
21 58 0.10
22 21 0.04
23 278 0.50
24 136 0.25
25 46 0.08
26 15 0.03
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (22 bp):
ATACACAAATTGGACAGCATAA
Found at i:42269291 original size:93 final size:93
Alignment explanation
Indices: 42268542--42269277 Score: 1237
Period size: 93 Copynumber: 7.9 Consensus size: 93
42268532 NNNNNNNNNN
*
42268542 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTAGACAGCATTTATTCACCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
* * *
42268607 ATTTGG-CAGCATATATATACAAATTTGA
66 A-TTGGACAGCATACATATACCAATTTGG
*
42268635 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTAGACAGCATTTATTCACCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
* *
42268700 ATTTGG-CAGCATATATATACAAATTTGG
66 A-TTGGACAGCATACATATACCAATTTGG
* *
42268728 ACAGCATTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCGAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
* *
42268793 ATTGGGCAGCATACATATACCAACTTGG
66 ATTGGACAGCATACATATACCAATTTGG
* *
42268821 ACAGCACTTATACACAAAATTTGACAGCATGTATATATAAAATTGGACAGCATTTATTCAGCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
42268886 ATTGGACAGCATACATATACCAATTTGG
66 ATTGGACAGCATACATATACCAATTTGG
* *
42268914 ACAGCACTTATACACAAAATTTGACAGCATGTATATATAAAATTGGACAGCATTTATTCAGCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
42268979 ATTGGACAGCATACATATACCAATTTGG
66 ATTGGACAGCATACATATACCAATTTGG
* *
42269007 ACAGCACTTATACACAAAATTTGACAGCATGTATATATAAAATTGGACAGCATTTATTCAGCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
42269072 ATTGGACAGCATACATATACCAATTTGG
66 ATTGGACAGCATACATATACCAATTTGG
* *
42269100 ACAGCACTTATACACAAAATTTGACAGCATGTATATATAAAATTGGACAGCATTTATTCAGCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
42269165 ATTGGACAGCATACATATACCAATTTGG
66 ATTGGACAGCATACATATACCAATTTGG
* *
42269193 ACAGCACTTATACACAAAATTTGACAGCATTTATAAACAAAATTGGACAGCATTTATTCACCAAA
1 ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
42269258 ATTGGACAGCATA-A-ATACCA
66 ATTGGACAGCATACATATACCA
42269278 CAAATTGGGC
Statistics
Matches: 625, Mismatches: 17, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
91 6 0.01
92 5 0.01
93 614 0.98
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (93 bp):
ACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAA
ATTGGACAGCATACATATACCAATTTGG
Found at i:42269868 original size:28 final size:28
Alignment explanation
Indices: 42269791--42269868 Score: 138
Period size: 28 Copynumber: 2.8 Consensus size: 28
42269781 NNNNNNNNNN
*
42269791 ATTAAACTCGCACACTTAGTGCTTTACA
1 ATTAAACTCGCACACTTAGTGTTTTACA
42269819 ATTAAACTCGCACACTTAGTGTTTTACA
1 ATTAAACTCGCACACTTAGTGTTTTACA
*
42269847 ATTAAATTCGCACACTTAGTGT
1 ATTAAACTCGCACACTTAGTGT
42269869 CGAAAGTCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (28 bp):
ATTAAACTCGCACACTTAGTGTTTTACA
Found at i:42271396 original size:27 final size:28
Alignment explanation
Indices: 42271357--42271422 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 28
42271347 CACGTGAAAA
*
42271357 AAAATA-AAAAAAT-TTAAAATTTTAAT
1 AAAATATAAGAAATATTAAAATTTTAAT
* * *
42271383 AAAATATAAGAAATATTTAATTTTTATT
1 AAAATATAAGAAATATTAAAATTTTAAT
*
42271411 AAAA-ATTAGAAA
1 AAAATATAAGAAA
42271423 AATATTATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 6 0.18
27 13 0.39
28 14 0.42
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (28 bp):
AAAATATAAGAAATATTAAAATTTTAAT
Found at i:42271429 original size:11 final size:10
Alignment explanation
Indices: 42271411--42271457 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
42271401 AATTTTTATT
42271411 AAAA-ATTAGA
1 AAAATATTA-A
42271421 AAAATATTATA
1 AAAATATTA-A
42271432 AAAATATTAA
1 AAAATATTAA
42271442 AAAAT-TTAA
1 AAAATATTAA
*
42271451 AATATAT
1 AAAATAT
42271458 AGAAATATNN
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 8 0.24
10 11 0.33
11 14 0.42
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAATATTAA
Found at i:42271435 original size:21 final size:21
Alignment explanation
Indices: 42271406--42271446 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
42271396 TATTTAATTT
*
42271406 TTATTAAAA-ATTAGAAAAATA
1 TTATAAAAATATTA-AAAAATA
42271427 TTATAAAAATATTAAAAAAT
1 TTATAAAAATATTAAAAAAT
42271447 TTAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
TTATAAAAATATTAAAAAATA
Found at i:42271443 original size:19 final size:19
Alignment explanation
Indices: 42271420--42271457 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
42271410 TAAAAATTAG
42271420 AAAAATATTATAAAA-ATATT
1 AAAAA-ATT-TAAAATATATT
42271440 AAAAAATTTAAAATATAT
1 AAAAAATTTAAAATATAT
42271458 AGAAATATNN
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 7 0.41
20 5 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAAATTTAAAATATATT
Found at i:42271452 original size:29 final size:27
Alignment explanation
Indices: 42271407--42271465 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
42271397 ATTTAATTTT
42271407 TATTAAAAATTAGAAAAATATTATAAAAA
1 TATTAAAAATTAG-AAAATA-TATAAAAA
* *
42271436 TATTAAAAAATT-TAAAATATATAGAAA
1 TATT-AAAAATTAGAAAATATATAAAAA
42271463 TAT
1 TAT
42271466 NNNNNNNNNN
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 10 0.37
28 6 0.22
29 4 0.15
30 7 0.26
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (27 bp):
TATTAAAAATTAGAAAATATATAAAAA
Found at i:42271668 original size:3 final size:3
Alignment explanation
Indices: 42271660--42271701 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
42271650 NNNNNNNNNN
42271660 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
42271702 TTGTTGTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:42274509 original size:30 final size:29
Alignment explanation
Indices: 42274470--42274548 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 29
42274460 ATGACACGTG
42274470 AAAAA-AAGAAAAAAATTTAAATTTTAAT
1 AAAAATAAGAAAAAAATTTAAATTTTAAT
* * *
42274498 AAAATATAAG--AAATATTTAATTTTTATT
1 AAAA-ATAAGAAAAAAATTTAAATTTTAAT
*
42274526 AAAAATTAGAAAAAATATTTAAA
1 AAAAATAAGAAAAAA-ATTTAAA
42274549 AAATATTAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
27 4 0.10
28 23 0.57
29 4 0.10
30 9 0.22
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (29 bp):
AAAAATAAGAAAAAAATTTAAATTTTAAT
Found at i:42274515 original size:28 final size:30
Alignment explanation
Indices: 42274476--42274548 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
42274466 CGTGAAAAAA
42274476 AGAAAAAA-ATTTAAATTTTAAT-AAAA-T
1 AGAAAAAATATTTAAATTTTAATAAAAATT
* * * *
42274503 ATAAGAAATATTTAATTTTTATTAAAAATT
1 AGAAAAAATATTTAAATTTTAATAAAAATT
42274533 AGAAAAAATATTTAAA
1 AGAAAAAATATTTAAA
42274549 AAATATTAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 6 0.17
28 12 0.33
29 4 0.11
30 14 0.39
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (30 bp):
AGAAAAAATATTTAAATTTTAATAAAAATT
Found at i:42274536 original size:156 final size:157
Alignment explanation
Indices: 42274245--42274536 Score: 507
Period size: 156 Copynumber: 1.9 Consensus size: 157
42274235 CGGTTAACCA
*
42274245 TTACAGCTATCTGCTCCTAATTTTTTTTAGTTAAATTCATCACGTGTCACAACCATCGCATGACA
1 TTACAGCTATCCGCTCCTAATTTTTTTTAGTTAAATTCATCACGTGTCACAACCATCGCATGACA
** **
42274310 CGTGAAAAAAAGAAAAAAATTTAAATTTTAATAAAATATAAGAAATAATTAATTTTATTGTACGT
66 CGTGAAAAAAAGAAAAAAATTTAAATTTTAATAAAATATAAGAAATAATTAATTTTATTAAAAAT
42274375 ATAGAATTTAACGCTTAATTGTAACAG
131 ATAGAATTTAACGCTTAATTGTAACAG
42274402 TTACAGCTATCCGCTCCTAA-TTTTTTTAGTTAAATTCATCACGTGTCACAACCATCGCATGACA
1 TTACAGCTATCCGCTCCTAATTTTTTTTAGTTAAATTCATCACGTGTCACAACCATCGCATGACA
*
42274466 CGTGAAAAAAAGAAAAAAATTTAAATTTTAATAAAATATAAGAAATATTTAATTTTTATTAAAAA
66 CGTGAAAAAAAGAAAAAAATTTAAATTTTAATAAAATATAAGAAATAATTAA-TTTTATTAAAAA
42274531 T-TAGAA
130 TATAGAA
42274537 AAAATATTTA
Statistics
Matches: 128, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
156 100 0.78
157 28 0.22
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (157 bp):
TTACAGCTATCCGCTCCTAATTTTTTTTAGTTAAATTCATCACGTGTCACAACCATCGCATGACA
CGTGAAAAAAAGAAAAAAATTTAAATTTTAATAAAATATAAGAAATAATTAATTTTATTAAAAAT
ATAGAATTTAACGCTTAATTGTAACAG
Found at i:42286807 original size:52 final size:52
Alignment explanation
Indices: 42286727--42286830 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 52
42286717 ATATTTTTCT
*
42286727 TGGATCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCGTCCACTAA
1 TGGATCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCATCCACTAA
* ** * **
42286779 TGGATCATTTGTACTCTTTATCTGATAACACGACATTTCAGTCATCCACTAA
1 TGGATCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCATCCACTAA
42286831 CATCCAGGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (52 bp):
TGGATCATTTGTACTCTTCATCCAATAACACGAAATCCCAGTCATCCACTAA
Found at i:42288757 original size:844 final size:845
Alignment explanation
Indices: 42287131--42288806 Score: 3097
Period size: 844 Copynumber: 2.0 Consensus size: 845
42287121 TGATACAAAT
42287131 TCGCTTACAGGATGTAATTGAGTCGTTTGATTGCCAGGTTAAAAATTAAGTAGTTCTCATTTTAG
1 TCGCTTACAGGATGTAATTGAGTCGTTTGATTGCCAGGTTAAAAATTAAGTAGTTCTCATTTTAG
* *
42287196 TTTAACAAAAGGGTAAATTTAATAAGATAGTTTAAATAGGTAGCGGATAAAATAAAGATAGTTTG
66 TTTAACAAAAGGGTAAATTTAAGAAGATAGTTTAAATAGGTAGCGAATAAAATAAAGATAGTTTG
*
42287261 ATGGAAAAATATGGATAAAAGAACTTAAAACAAGAAAGAACCCTTAATAGCAATTAATGACCCGA
131 ATGGAAAAATATGAATAAAAGAACTTAAAACAAGAAAGAACCCTTAATAGCAATTAATGACCCGA
42287326 ATCTTATAAGTTTTAAGTTGAAAAATATGAATAGCTAGATAGGACCGTGACCCACTTTCTAGCAA
196 ATCTTATAAGTTTTAAGTTGAAAAATATGAATAGCTAGATAGGACCGTGACCCACTTTCTAGCAA
42287391 GATAGGAACCAACGGTATAAGATTGAACGCCACACTCGAAAGAGTGATAAGTTCAAGAAAGAAAC
261 GATAGGAACCAACGGTATAAGATTGAACGCCACACTCGAAAGAGTGATAAGTTCAAGAAAGAAAC
42287456 AAGGTTGACGCCACTAGCTTAGCTAGATAAGTCAAGTTGAATCTCAAAGAAAATCGAGAGTGAAT
326 AAGGTTGACGCCACTAGCTTAGCTAGATAAGTCAAGTTGAATCTCAAAGAAAATCGAGAGTGAAT
*
42287521 AACTCATAAAGTTATATTTCATATGTCAAAAGTTGTGTCTAATGTTTACAAAAGAAAACTATTTA
391 AACTCATAAAGTTATATTTCATATGTCAAAAGTTGTGTCTAAAGTTTACAAAAGAAAACTATTTA
*
42287586 TAGGCTGAATTATGTCTAGCCGAATAGACAAACAATAAAGGAAAATAATTAAGCTAAGTTAATGT
456 TAGGCTGAATTATGTCCAGCCGAATAGACAAACAATAAAGGAAAATAATTAAGCTAAGTTAATGT
* *
42287651 CCAACTGAAAACAATGTACTTGGTGAAATGGAAGTGCTGATCGGTCTTGATTCATGGCTTGATAG
521 ACAACTGAAAACAATGTACTTGATGAAATGGAAGTGCTGATCGGTCTTGATTCATGGCTTGATAG
*
42287716 ATGAGCTAAATGTTGCTTGATTCGGTGAATAGAGTTTATGTTTGTAGGTGCACCGAAAGGAAGTT
586 ATGAGCTAAATGTAGCTTGATTCGGTGAATAGAGTTTATGTTTGTAGGTGCACCGAAAGGAAGTT
*
42287781 TGCTGATGAATGAACTTGCGGGCAGCCGAATGGTCTTAAAGTGTGAACATTCAGTTTTGTAGGTG
651 TGCTGATGAATGAACTTGCGGGCAGCCGAATGGTCTTAAAGTGTGAACATGCAGTTTTGTAGGTG
* *
42287846 TGAACAGCAAGAATCGAATGAACCCTTGAAAATGTAGCTAACTAGCTCATAATCTTTGGCAAGAG
716 TGAACAGCAAGAATAGAATGAACACTTGAAAATGTAGCTAACTAGCTCATAATCTTTGGCAAGAG
*
42287911 TTCATGAATAATTCGATTGAAGTAATGTACCAAGCAGCCCAAGGTACATGCAAAATAATACGAAC
781 TTCATGAATAATTCGATTGAAGTAATGCACCAAGCAGCCCAAGGTACATGCAAAATAATACGAAC
*
42287976 TCGCTTACAGGATGTAATTGAGTCGTTTGATTGCCCA-GTTAAAAATTAAGTAGTTCTCGTTTTA
1 TCGCTTACAGGATGTAATTGAGTCGTTTGATTG-CCAGGTTAAAAATTAAGTAGTTCTCATTTTA
*
42288040 GTTTAACAAAAGGGTAAATTTAAGAAGATAGTTTAAATAGGTAGTGAATAAAATAAAGATAGTTT
65 GTTTAACAAAAGGGTAAATTTAAGAAGATAGTTTAAATAGGTAGCGAATAAAATAAAGATAGTTT
* * * *
42288105 GATGG-AAAATTTGAATAAAAGAACTTAAAACAAGAAAGAACCCTTAATAGTAATTAATTACTCG
130 GATGGAAAAATATGAATAAAAGAACTTAAAACAAGAAAGAACCCTTAATAGCAATTAATGACCCG
42288169 AATCTTATAAGTTTTAAGTTGAAAAATATGAATAGCTAGATAGGACCGTGACCCACTTTCTAGCA
195 AATCTTATAAGTTTTAAGTTGAAAAATATGAATAGCTAGATAGGACCGTGACCCACTTTCTAGCA
*
42288234 AGATAGGAACCAACGGTATAAGATTGAACGCCTCACTCGAAAGAGTGATAAGTTCAAGAAAGAAA
260 AGATAGGAACCAACGGTATAAGATTGAACGCCACACTCGAAAGAGTGATAAGTTCAAGAAAGAAA
42288299 CAAGGTTGACGCCACTAGCTTAGCTAGATAAGTCAAGTTGAATCTCAAAGAAAATCGAGAGTGAA
325 CAAGGTTGACGCCACTAGCTTAGCTAGATAAGTCAAGTTGAATCTCAAAGAAAATCGAGAGTGAA
42288364 TAACTCATAAAGTTATATTTCATATGTCAAAAGTTGTGTCTAAAGTTTACAAAAGAAAACTATTT
390 TAACTCATAAAGTTATATTTCATATGTCAAAAGTTGTGTCTAAAGTTTACAAAAGAAAACTATTT
42288429 ATAGGCTGAATTATGTCCAGCCGAATAGACAAACAATAAAGGAAAATAATTAAGCTAAGTTAATG
455 ATAGGCTGAATTATGTCCAGCCGAATAGACAAACAATAAAGGAAAATAATTAAGCTAAGTTAATG
* *
42288494 TACAGCTGAAAACAATGTACTTGATGAAATGGAAGTGTTGATCGGTCTTGATTCATGGCTTGATA
520 TACAACTGAAAACAATGTACTTGATGAAATGGAAGTGCTGATCGGTCTTGATTCATGGCTTGATA
42288559 GATGAGCTAAATGTAGCTTGATTCGGTGAATAGAGTTTATGTTTGTAGGTGCACC-AAATGGAAG
585 GATGAGCTAAATGTAGCTTGATTCGGTGAATAGAGTTTATGTTTGTAGGTGCACCGAAA-GGAAG
* *
42288623 TTTGCTGATGAATGAACTTGTGGGCAGCCGAATGGTCTTGAAGTGTGAACATGCAGTTTTGTAGG
649 TTTGCTGATGAATGAACTTGCGGGCAGCCGAATGGTCTTAAAGTGTGAACATGCAGTTTTGTAGG
42288688 TGTGAACAGCAAGAATAGAATGAACACTTGAAAATGTAGCTAACTAGCTCATAATCTTTGGCAAG
714 TGTGAACAGCAAGAATAGAATGAACACTTGAAAATGTAGCTAACTAGCTCATAATCTTTGGCAAG
*
42288753 AGTTCATGAATAATTCGGTTGAAGTAATGCACCAAGCAGCCCAAGGTACATGCA
779 AGTTCATGAATAATTCGATTGAAGTAATGCACCAAGCAGCCCAAGGTACATGCA
42288807 CAGTCGGGTG
Statistics
Matches: 805, Mismatches: 24, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
843 3 0.00
844 673 0.84
845 126 0.16
846 3 0.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (845 bp):
TCGCTTACAGGATGTAATTGAGTCGTTTGATTGCCAGGTTAAAAATTAAGTAGTTCTCATTTTAG
TTTAACAAAAGGGTAAATTTAAGAAGATAGTTTAAATAGGTAGCGAATAAAATAAAGATAGTTTG
ATGGAAAAATATGAATAAAAGAACTTAAAACAAGAAAGAACCCTTAATAGCAATTAATGACCCGA
ATCTTATAAGTTTTAAGTTGAAAAATATGAATAGCTAGATAGGACCGTGACCCACTTTCTAGCAA
GATAGGAACCAACGGTATAAGATTGAACGCCACACTCGAAAGAGTGATAAGTTCAAGAAAGAAAC
AAGGTTGACGCCACTAGCTTAGCTAGATAAGTCAAGTTGAATCTCAAAGAAAATCGAGAGTGAAT
AACTCATAAAGTTATATTTCATATGTCAAAAGTTGTGTCTAAAGTTTACAAAAGAAAACTATTTA
TAGGCTGAATTATGTCCAGCCGAATAGACAAACAATAAAGGAAAATAATTAAGCTAAGTTAATGT
ACAACTGAAAACAATGTACTTGATGAAATGGAAGTGCTGATCGGTCTTGATTCATGGCTTGATAG
ATGAGCTAAATGTAGCTTGATTCGGTGAATAGAGTTTATGTTTGTAGGTGCACCGAAAGGAAGTT
TGCTGATGAATGAACTTGCGGGCAGCCGAATGGTCTTAAAGTGTGAACATGCAGTTTTGTAGGTG
TGAACAGCAAGAATAGAATGAACACTTGAAAATGTAGCTAACTAGCTCATAATCTTTGGCAAGAG
TTCATGAATAATTCGATTGAAGTAATGCACCAAGCAGCCCAAGGTACATGCAAAATAATACGAAC
Found at i:42292267 original size:13 final size:13
Alignment explanation
Indices: 42292230--42292273 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
42292220 TCAAATTCTT
42292230 TTTTTCATTCTTTGC
1 TTTTTCATT-TTT-C
*
42292245 TTTTGC-TTTTTC
1 TTTTTCATTTTTC
42292257 TTTTTCATTTTTC
1 TTTTTCATTTTTC
42292270 TTTT
1 TTTT
42292274 CTTTTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 6 0.23
13 13 0.50
14 2 0.08
15 5 0.19
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.75
Consensus pattern (13 bp):
TTTTTCATTTTTC
Found at i:42292291 original size:6 final size:6
Alignment explanation
Indices: 42292230--42292280 Score: 50
Period size: 6 Copynumber: 8.0 Consensus size: 6
42292220 TCAAATTCTT
*
42292230 TTTTTC ATTCTTTGC TTTTGC TTTTTC TTTTTC ATTTTTC -TTTTC TTTTTC
1 TTTTTC -TT-TTT-C TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TTTTTC
42292281 ATTCTTTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
5 5 0.13
6 17 0.45
7 10 0.26
8 5 0.13
9 1 0.03
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTTC
Found at i:42292294 original size:18 final size:16
Alignment explanation
Indices: 42292251--42292291 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
42292241 TTGCTTTTGC
42292251 TTTTTCTTTTTCATTTT
1 TTTTTCTTTTTCA-TTT
*
42292268 TCTTTTCTTTTTCATTC
1 T-TTTTCTTTTTCATTT
42292285 TTTTTCT
1 TTTTTCT
42292292 CTTGTTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 4 0.18
18 12 0.55
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTTCATTT
Found at i:42301482 original size:28 final size:28
Alignment explanation
Indices: 42301416--42301482 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
42301406 AAAATCTCAA
42301416 TTTTTTAATAATAAAAAAAACAATAGAAT
1 TTTTTTAA-AATAAAAAAAACAATAGAAT
** *
42301445 TTTTCAAAAATTATAAAAAAAC-ATA-ATT
1 TTTTTTAAAA-TA-AAAAAAACAATAGAAT
42301473 TTTTTTAAAA
1 TTTTTTAAAA
42301483 ACATAAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 12 0.39
29 11 0.35
30 8 0.26
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.39
Consensus pattern (28 bp):
TTTTTTAAAATAAAAAAAACAATAGAAT
Found at i:42302447 original size:19 final size:17
Alignment explanation
Indices: 42302423--42302477 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 17
42302413 TGATACTTAT
42302423 TTTTTTTAATTTTATATAA
1 TTTTTTTAATTTT-TA-AA
42302442 TTTTTTT-ATTTTTAAA
1 TTTTTTTAATTTTTAAA
*
42302458 TATTTTATAATTTTTAAA
1 T-TTTTTTAATTTTTAAA
42302476 TT
1 TT
42302478 ATTTGTTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 3 0.09
17 8 0.24
18 15 0.45
19 7 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTTTAATTTTTAAA
Found at i:42304141 original size:13 final size:13
Alignment explanation
Indices: 42304123--42304173 Score: 102
Period size: 13 Copynumber: 3.9 Consensus size: 13
42304113 AGTTCTTTAT
42304123 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
42304136 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
42304149 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
42304162 TGCTTTTGAGAA
1 TGCTTTTGAGAA
42304174 ATTTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.24, C:0.08, G:0.29, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:42304789 original size:12 final size:12
Alignment explanation
Indices: 42304772--42304819 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
42304762 TTTGATTCAG
42304772 CGTCATCATCAC
1 CGTCATCATCAC
42304784 CGTCATCATCAC
1 CGTCATCATCAC
* **
42304796 CATCATCATCGT
1 CGTCATCATCAC
*
42304808 CGTCGTCATCAC
1 CGTCATCATCAC
42304820 TTTCTCGACC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.23, C:0.40, G:0.10, T:0.27
Consensus pattern (12 bp):
CGTCATCATCAC
Found at i:42306315 original size:72 final size:72
Alignment explanation
Indices: 42306189--42306358 Score: 229
Period size: 72 Copynumber: 2.4 Consensus size: 72
42306179 AAATCATATT
* ** * *
42306189 TAAACAACTATTGATAAAACTA-ATTTAGTATAAATAAGTAGAACATAAAATCAATATCCAAAGA
1 TAAACAACTATTAATAAAACTAGATTTAACATAAATAAATAGAACATAAAATCAATATCCAAAAA
42306253 CCAAACA
66 CCAAACA
*
42306260 TAAACAACTATTAATAAAACTAGA-TTACACATAAATAAATAGAACATAAATTCAATATCCAAAA
1 TAAACAACTATTAATAAAACTAGATTTA-ACATAAATAAATAGAACATAAAATCAATATCCAAAA
42306324 ACCAAACA
65 ACCAAACA
* * *
42306332 TAAATAAATATTAATAACACTAG-TTTA
1 TAAACAACTATTAATAAAACTAGATTTA
42306359 TCGTTGTTGT
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
71 24 0.28
72 63 0.72
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (72 bp):
TAAACAACTATTAATAAAACTAGATTTAACATAAATAAATAGAACATAAAATCAATATCCAAAAA
CCAAACA
Found at i:42306812 original size:18 final size:18
Alignment explanation
Indices: 42306787--42306833 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
42306777 CCATCAATTC
*
42306787 GAACATCATTTGAAATGT
1 GAACATCATTTAAAATGT
** *
42306805 TCACATCATTCAAAATGT
1 GAACATCATTTAAAATGT
42306823 GAACATCATTT
1 GAACATCATTT
42306834 CTCATATTCT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
GAACATCATTTAAAATGT
Found at i:42307565 original size:20 final size:20
Alignment explanation
Indices: 42307540--42307582 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
42307530 TTTACATGTG
42307540 TATGAAAATACATATTCTAA
1 TATGAAAATACATATTCTAA
42307560 TATGAAAATACATATTCTAA
1 TATGAAAATACATATTCTAA
42307580 TAT
1 TAT
42307583 TAATTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (20 bp):
TATGAAAATACATATTCTAA
Found at i:42309014 original size:19 final size:19
Alignment explanation
Indices: 42308968--42309016 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
42308958 AACAGCTTCA
*
42308968 AAATATTAAACAGAAGAAG
1 AAATATAAAACAGAAGAAG
* *
42308987 AACTAATAAAACAGAAGAAT
1 AAAT-ATAAAACAGAAGAAG
42309007 AAATATAAAA
1 AAATATAAAA
42309017 GAAACTCTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.67, C:0.06, G:0.10, T:0.16
Consensus pattern (19 bp):
AAATATAAAACAGAAGAAG
Found at i:42309956 original size:20 final size:20
Alignment explanation
Indices: 42309933--42309972 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
42309923 TTAATGTAAA
*
42309933 ATTCTTTTATTTAATATTTT
1 ATTCTTCTATTTAATATTTT
42309953 ATTCTTCTATTTAATATTTT
1 ATTCTTCTATTTAATATTTT
42309973 TAATTGCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTCTTCTATTTAATATTTT
Found at i:42310665 original size:40 final size:41
Alignment explanation
Indices: 42310598--42310679 Score: 148
Period size: 40 Copynumber: 2.0 Consensus size: 41
42310588 CTCGTATTCA
42310598 TCGCCGAATTAGGGTTACGAAGCATTACCTAACAAACACAAC
1 TCGCCGAATTA-GGTTACGAAGCATTACCTAACAAACACAAC
42310640 TCGCCGAATT-GGTTACGAAGCATTACCTAACAAACACAAC
1 TCGCCGAATTAGGTTACGAAGCATTACCTAACAAACACAAC
42310680 CATTTTTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 30 0.75
42 10 0.25
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.20
Consensus pattern (41 bp):
TCGCCGAATTAGGTTACGAAGCATTACCTAACAAACACAAC
Found at i:42311424 original size:41 final size:41
Alignment explanation
Indices: 42311367--42311516 Score: 237
Period size: 41 Copynumber: 3.7 Consensus size: 41
42311357 TTTAACATAT
* *
42311367 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
42311408 TCACCGGCACGTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAGA
* *
42311449 TCACCGGCAAGTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAGA
* *
42311490 TCACCGGTACGTAGCCTGCTAGACTTA
1 TCACCGGCACGTAGCCTGCTAGGCTTA
42311517 AAGTCTGAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (41 bp):
TCACCGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:42314739 original size:9 final size:9
Alignment explanation
Indices: 42314725--42314755 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
42314715 GTTAAACGAA
42314725 TCGAGTTAT
1 TCGAGTTAT
*
42314734 TCGAGTTAA
1 TCGAGTTAT
42314743 TCGAGTTAT
1 TCGAGTTAT
42314752 TCGA
1 TCGA
42314756 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:42315861 original size:51 final size:51
Alignment explanation
Indices: 42315800--42315897 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
42315790 AATTATTTAA
* *
42315800 AAATAGGGATTTAAGATAAATTTA-AGAGGAAGTTGAGCGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAGTTGAGAGCAAATTGAAAAT
* * * *
42315851 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAGTTGAGAGCAAATTGA
42315898 GAGGAAATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
51 39 0.98
52 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.24, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAGTTGAGAGCAAATTGAAAAT
Found at i:42315873 original size:11 final size:11
Alignment explanation
Indices: 42315859--42315935 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
42315849 ATAAATATGG
42315859 ATTTGAGAGAA
1 ATTTGAGAGAA
*
42315870 ATTTTGA-AGGA
1 A-TTTGAGAGAA
42315881 ATTTGAGAGCAA
1 ATTTGAGAG-AA
42315893 A-TTGAGAGGAA
1 ATTTGAGA-GAA
42315904 ATTT-AGAAGAA
1 ATTTGAG-AGAA
42315915 A-TTGAGAGGAA
1 ATTTGAGA-GAA
42315926 ATTTGAGAGA
1 ATTTGAGAGA
42315936 GGATTGGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 8 0.15
11 30 0.55
12 17 0.31
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:42315884 original size:22 final size:22
Alignment explanation
Indices: 42315859--42315935 Score: 97
Period size: 22 Copynumber: 3.5 Consensus size: 22
42315849 ATAAATATGG
42315859 ATTTGAGAGAAATTTTGA-AGG-A
1 ATTTGAGAGAAA--TTGAGAGGAA
42315881 ATTTGAGAGCAAATTGAGAGGAA
1 ATTTGAGAG-AAATTGAGAGGAA
42315904 ATTT-AGAAGAAATTGAGAGGAA
1 ATTTGAG-AGAAATTGAGAGGAA
42315926 ATTTGAGAGA
1 ATTTGAGAGA
42315936 GGATTGGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.08
22 34 0.68
23 12 0.24
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAGGAA
Found at i:42315898 original size:33 final size:33
Alignment explanation
Indices: 42315859--42315935 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
42315849 ATAAATATGG
* *
42315859 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGCAA
*
42315893 A-TTGAGAGGAAATTTAGAAGAAATTGAGAGGAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGCAA
42315926 ATTTGAGAGA
1 ATTTGAGAGA
42315936 GGATTGGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 21 0.55
34 17 0.45
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGCAA
Found at i:42317459 original size:14 final size:14
Alignment explanation
Indices: 42317440--42317472 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
42317430 AATTTGATTT
42317440 TCAAGTTAATCGAA
1 TCAAGTTAATCGAA
*
42317454 TCAAGTTATTCGAA
1 TCAAGTTAATCGAA
42317468 T-AAGT
1 TCAAGT
42317473 AATTCGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (14 bp):
TCAAGTTAATCGAA
Found at i:42317689 original size:22 final size:24
Alignment explanation
Indices: 42317661--42317710 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
42317651 TATATTTTTT
42317661 TAAAAAAAT-TATAAA-AAAATTC
1 TAAAAAAATATATAAAGAAAATTC
*
42317683 T-AAAAAATATATAAAGAAAGTTC
1 TAAAAAAATATATAAAGAAAATTC
42317706 -AAAAA
1 TAAAAA
42317711 TAATGATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 7 0.29
22 7 0.29
23 10 0.42
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.24
Consensus pattern (24 bp):
TAAAAAAATATATAAAGAAAATTC
Found at i:42317712 original size:21 final size:21
Alignment explanation
Indices: 42317663--42317710 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
42317653 TATTTTTTTA
42317663 AAAAAAT-TATAAAAAAATTC
1 AAAAAATATATAAAAAAATTC
*
42317683 TAAAAAATATATAAAGAAAGTTC
1 -AAAAAATATATAAA-AAAATTC
42317706 AAAAA
1 AAAAA
42317711 TAATGATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 11 0.46
23 6 0.25
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (21 bp):
AAAAAATATATAAAAAAATTC
Found at i:42319534 original size:5 final size:5
Alignment explanation
Indices: 42319526--42319650 Score: 71
Period size: 6 Copynumber: 24.0 Consensus size: 5
42319516 CAACTTTTTT
42319526 TTTCA TTTCA -TTCA TTTCCA TTTCCA TTTCCA TTTCA TTTACA TTTACA
1 TTTCA TTTCA TTTCA TTT-CA TTT-CA TTT-CA TTTCA TTT-CA TTT-CA
* * ** *
42319575 TTTACA TTTCCA TTTCA TTTAA ATT-A TTTTT TTTCA TTTAAA TTT-A
1 TTT-CA TTT-CA TTTCA TTTCA TTTCA TTTCA TTTCA TTT-CA TTTCA
*
42319621 TTT-A TTTCTCA TTTCA TTT-T TTTCA TTTCA
1 TTTCA -TT-TCA TTTCA TTTCA TTTCA TTTCA
42319651 GTTTTTGTTT
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
4 15 0.15
5 39 0.39
6 46 0.46
7 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.00, T:0.59
Consensus pattern (5 bp):
TTTCA
Found at i:42319549 original size:6 final size:6
Alignment explanation
Indices: 42319538--42319594 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
42319528 TCATTTCATT
* * *
42319538 CATTTC CATTTC CATTTC CATTT- CATTTA CATTTA CATTTA CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
42319585 CATTT- CATTT
1 CATTTC CATTT
42319595 AAATTATTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
5 10 0.20
6 39 0.80
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:42319576 original size:29 final size:29
Alignment explanation
Indices: 42319529--42319595 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
42319519 CTTTTTTTTT
* *
42319529 CATTTCA-TT-CATTTCCATTTCCATTTC
1 CATTTCATTTACATTTACATTTACATTTC
42319556 CATTTCATTTACATTTACATTTACATTTC
1 CATTTCATTTACATTTACATTTACATTTC
42319585 CATTTCATTTA
1 CATTTCATTTA
42319596 AATTATTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 7 0.19
28 2 0.06
29 27 0.75
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (29 bp):
CATTTCATTTACATTTACATTTACATTTC
Found at i:42319611 original size:19 final size:21
Alignment explanation
Indices: 42319587--42319634 Score: 73
Period size: 19 Copynumber: 2.4 Consensus size: 21
42319577 TACATTTCCA
42319587 TTTCATTTAAA-TTATTT-TT
1 TTTCATTTAAATTTATTTATT
42319606 TTTCATTTAAATTTATTTATT
1 TTTCATTTAAATTTATTTATT
*
42319627 TCTCATTT
1 TTTCATTT
42319635 CATTTTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 11 0.42
20 6 0.23
21 9 0.35
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTCATTTAAATTTATTTATT
Found at i:42319646 original size:14 final size:15
Alignment explanation
Indices: 42319616--42319656 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
42319606 TTTCATTTAA
42319616 ATTT-ATTTATTTCTC
1 ATTTCATTT-TTTCTC
42319631 ATTTCATTTTTT-TC
1 ATTTCATTTTTTCTC
42319645 ATTTCAGTTTTT
1 ATTTCA-TTTTT
42319657 GTTTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.33
15 12 0.50
16 4 0.17
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.68
Consensus pattern (15 bp):
ATTTCATTTTTTCTC
Found at i:42319726 original size:19 final size:19
Alignment explanation
Indices: 42319702--42319753 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
42319692 ACTTTCATTC
42319702 CATTTCATAATCATAATTT
1 CATTTCATAATCATAATTT
*
42319721 CATTTCATAATCATAGTTT
1 CATTTCATAATCATAATTT
*
42319740 CATTTCATATTCAT
1 CATTTCATAATCAT
42319754 TTAACATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (19 bp):
CATTTCATAATCATAATTT
Found at i:42319770 original size:23 final size:23
Alignment explanation
Indices: 42319737--42319821 Score: 98
Period size: 23 Copynumber: 3.5 Consensus size: 23
42319727 ATAATCATAG
42319737 TTTCATTTCATATTCATTTAACA
1 TTTCATTTCATATTCATTTAACA
* * *
42319760 TTTTATTTCATATTAATTACAAATTACA
1 TTTCATTTCATATTCATT-----TAACA
42319788 TTTCATTTCATATTCATTTAACA
1 TTTCATTTCATATTCATTTAACA
42319811 TTTCATTTCAT
1 TTTCATTTCAT
42319822 TAATTTTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
23 31 0.61
28 20 0.39
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTCATTTCATATTCATTTAACA
Found at i:42320240 original size:5 final size:5
Alignment explanation
Indices: 42320232--42320532 Score: 98
Period size: 5 Copynumber: 55.4 Consensus size: 5
42320222 TTGTTTTTTT
* *
42320232 TTTCA TTTCA TTCCTA TTTCCA TTTCA TTTCA TTTGTA TTTCCA TTTCA
1 TTTCA TTTCA TTTC-A TTT-CA TTTCA TTTCA TTT-CA TTT-CA TTTCA
* *
42320281 TTTCA TTTCA TTTTCA TTTTCA TTTCA TTT-A ATT-A TTT-T TTTCTA
1 TTTCA TTTCA -TTTCA -TTTCA TTTCA TTTCA TTTCA TTTCA TTTC-A
* * ** **
42320326 TTTAAA TTT-A ATT-A TTTCTCA TTTTCAAA TTTTT TTTCA TTTCA GTTTTTG
1 TTT-CA TTTCA TTTCA -TT-TCA -TTTC--A TTTCA TTTCA TTTCA --TTTCA
* *
42320377 TCTTCA TTTCAA TTT-A TAATTTA TTTTCA TTTAAA CTTTCA -TTCTA TTTCA
1 T-TTCA TTTC-A TTTCA T--TTCA -TTTCA TTT-CA -TTTCA TTTC-A TTTCA
* *
42320428 TAATCA --TAA TTTCA TTTCA TATTCA TTTAACA TTTCA TTTCA TTTCA
1 T-TTCA TTTCA TTTCA TTTCA T-TTCA TTT--CA TTTCA TTTCA TTTCA
* *
42320475 TTTCA TATTCA TTATAAA TTACA TTTCA TTTCA TATTCA TTTAACA TTTCA
1 TTTCA T-TTCA TT-T-CA TTTCA TTTCA TTTCA T-TTCA TTT--CA TTTCA
42320526 TTTCA TT
1 TTTCA TT
42320533 AATTTTTTTC
Statistics
Matches: 230, Mismatches: 30, Indels: 72
0.69 0.09 0.22
Matches are distributed among these distances:
3 2 0.01
4 18 0.08
5 108 0.47
6 72 0.31
7 28 0.12
8 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.01, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:42320259 original size:22 final size:22
Alignment explanation
Indices: 42320232--42320310 Score: 115
Period size: 22 Copynumber: 3.6 Consensus size: 22
42320222 TTGTTTTTTT
*
42320232 TTTCATTTCATTCCTATTTCCA
1 TTTCATTTCATTTCTATTTCCA
*
42320254 TTTCATTTCATTTGTATTTCCA
1 TTTCATTTCATTTCTATTTCCA
*
42320276 TTTCATTTCATTTC-ATTTTCA
1 TTTCATTTCATTTCTATTTCCA
42320297 TTTTCATTTCATTT
1 -TTTCATTTCATTT
42320311 AATTATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
21 6 0.12
22 46 0.88
ACGTcount: A:0.18, C:0.20, G:0.01, T:0.61
Consensus pattern (22 bp):
TTTCATTTCATTTCTATTTCCA
Found at i:42320301 original size:28 final size:27
Alignment explanation
Indices: 42320247--42320532 Score: 123
Period size: 28 Copynumber: 10.5 Consensus size: 27
42320237 TTTCATTCCT
*
42320247 ATTTCCATTTCATTTCATTTGT-ATTTCC
1 ATTT-CATTTCATTTCATTT-TCATTTTC
42320275 ATTTCATTTCATTTCATTTTCATTTTC
1 ATTTCATTTCATTTCATTTTCATTTTC
*
42320302 ATTTCATTT-AATT-A-TTT--TTTTC
1 ATTTCATTTCATTTCATTTTCATTTTC
* *
42320324 TATTTAAATTT-AATT-ATTTCTCATTTTC
1 -ATTT-CATTTCATTTCATTT-TCATTTTC
** ** *
42320352 AAATTTTTTTTCATTTCAGTTTTTGTCTTC
1 --ATTTCATTTCATTTCA-TTTTCATTTTC
* **
42320382 ATTTCAATTT-ATAATTTATTTTCATTTAA
1 ATTTC-ATTTCAT--TTCATTTTCATTTTC
** *
42320411 ACTTTCA-TTCTATTTCATAATCA---TA
1 A-TTTCATTTC-ATTTCATTTTCATTTTC
*
42320436 ATTTCATTTCATATTCATTTAACA-TTTC
1 ATTTCATTTCAT-TTCATTT-TCATTTTC
* **
42320464 ATTTCATTTCATTTCATATTCATTATAA
1 ATTTCATTTCATTTCATTTTCATT-TTC
* * *
42320492 ATTACATTTCATTTCATATTCATTTAAC
1 ATTTCATTTCATTTCATTTTCATTT-TC
42320520 ATTTCATTTCATT
1 ATTTCATTTCATT
42320533 AATTTTTTTC
Statistics
Matches: 200, Mismatches: 33, Indels: 50
0.71 0.12 0.18
Matches are distributed among these distances:
22 5 0.03
23 4 0.02
24 19 0.09
25 13 0.06
26 9 0.05
27 37 0.19
28 77 0.38
29 18 0.09
30 15 0.08
31 3 0.01
ACGTcount: A:0.26, C:0.15, G:0.01, T:0.58
Consensus pattern (27 bp):
ATTTCATTTCATTTCATTTTCATTTTC
Found at i:42320321 original size:27 final size:27
Alignment explanation
Indices: 42320232--42320314 Score: 91
Period size: 27 Copynumber: 3.1 Consensus size: 27
42320222 TTGTTTTTTT
*
42320232 TTTCA-TTTCA-TTCCTATTTCCATTTCA
1 TTTCATTTTCATTTCC-ATTT-CATTTAA
*
42320259 TTTCATTTGT-ATTTCCATTTCATTTCA
1 TTTCATTT-TCATTTCCATTTCATTTAA
*
42320286 TTTCATTTTCATTTTCATTTCATTTAA
1 TTTCATTTTCATTTCCATTTCATTTAA
42320313 TT
1 TT
42320315 ATTTTTTTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
26 1 0.02
27 37 0.74
28 7 0.14
29 5 0.10
ACGTcount: A:0.19, C:0.19, G:0.01, T:0.60
Consensus pattern (27 bp):
TTTCATTTTCATTTCCATTTCATTTAA
Found at i:42320322 original size:22 final size:22
Alignment explanation
Indices: 42320276--42320342 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
42320266 TGTATTTCCA
* *
42320276 TTTCATTTCATTTCATT-TTCAT
1 TTTCATTTCATTTAATTATT-TT
42320298 TTTCATTTCATTTAATTATTTT
1 TTTCATTTCATTTAATTATTTT
*
42320320 TTTCTATTTAAATTTAATTATTT
1 TTTC-ATTT-CATTTAATTATTT
42320343 CTCATTTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
22 21 0.54
23 6 0.15
24 12 0.31
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTCATTTCATTTAATTATTTT
Found at i:42320924 original size:5 final size:5
Alignment explanation
Indices: 42320916--42320999 Score: 96
Period size: 5 Copynumber: 15.6 Consensus size: 5
42320906 TTTCTTTTTT
*
42320916 TTTCA TTTCA TTTCTA TTTCCA TTTCA TTTCA TTTCA TTTGTA TTTCCA
1 TTTCA TTTCA TTTC-A TTT-CA TTTCA TTTCA TTTCA TTT-CA TTT-CA
*
42320965 TTTCA TTTCA TTTAA TTTTCA TTTCCA TTTCA TTT
1 TTTCA TTTCA TTTCA -TTTCA TTT-CA TTTCA TTT
42321000 AAATTATCTT
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
5 43 0.62
6 25 0.36
7 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.01, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:42320942 original size:22 final size:20
Alignment explanation
Indices: 42320916--42321001 Score: 100
Period size: 22 Copynumber: 4.0 Consensus size: 20
42320906 TTTCTTTTTT
*
42320916 TTTCATTTCATTTCTATTTCCA
1 TTTCATTTCATTTC-ATTT-AA
*
42320938 TTTCATTTCATTTCATTTGTA
1 TTTCATTTCATTTCATTT-AA
42320959 TTTCCATTTCATTTCATTTAA
1 TTT-CATTTCATTTCATTTAA
42320980 TTTTCATTTCCATTTCATTTAA
1 -TTTCATTT-CATTTCATTTAA
42321002 ATTATCTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.24
22 44 0.76
ACGTcount: A:0.21, C:0.19, G:0.01, T:0.59
Consensus pattern (20 bp):
TTTCATTTCATTTCATTTAA
Found at i:42320946 original size:27 final size:26
Alignment explanation
Indices: 42320916--42321021 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 26
42320906 TTTCTTTTTT
42320916 TTTCATTTCATTTCTATTTCCATTTCA
1 TTTCATTTCATTT-TATTTCCATTTCA
42320943 TTTCATTTCATTTGTATTTCCATTTCA
1 TTTCATTTCATTT-TATTTCCATTTCA
*
42320970 TTTCATTTAATTTTCATTTCCATTTCA
1 TTTCATTTCATTTT-ATTTCCATTTCA
* *
42320997 TTTAAATTATC-TTTTTTTTCCATTT
1 TTT-CATT-TCATTTTATTTCCATTT
42321022 AAATTTAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
26 1 0.01
27 62 0.87
28 7 0.10
29 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.01, T:0.61
Consensus pattern (26 bp):
TTTCATTTCATTTTATTTCCATTTCA
Found at i:42321020 original size:22 final size:22
Alignment explanation
Indices: 42320994--42321043 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
42320984 CATTTCCATT
**
42320994 TCATTTAAATTATCTTTTTTTTC
1 TCATTTAAATT-TAATTTTTTTC
42321017 -CATTTAAATTTAATTTTTTTC
1 TCATTTAAATTTAATTTTTTTC
42321038 TCATTT
1 TCATTT
42321044 TATTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (22 bp):
TCATTTAAATTTAATTTTTTTC
Found at i:42321112 original size:56 final size:57
Alignment explanation
Indices: 42321017--42321124 Score: 175
Period size: 56 Copynumber: 1.9 Consensus size: 57
42321007 CTTTTTTTTC
42321017 CATTTAAATTTAATTTTTTTCTCATTTTATTTAAATTATCTATCTTCCCATTCATTT
1 CATTTAAATTTAATTTTTTTCTCATTTTATTTAAATTATCTATCTTCCCATTCATTT
* *
42321074 CATTTAAATTTAA-TTTTTTCTC-TTTTCATTTAATTTATCTTTCTTCCCATT
1 CATTTAAATTTAATTTTTTTCTCATTTT-ATTTAAATTATCTATCTTCCCATT
42321125 TTAATTTACG
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
55 4 0.08
56 31 0.65
57 13 0.27
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.59
Consensus pattern (57 bp):
CATTTAAATTTAATTTTTTTCTCATTTTATTTAAATTATCTATCTTCCCATTCATTT
Found at i:42324584 original size:75 final size:75
Alignment explanation
Indices: 42324457--42324802 Score: 620
Period size: 75 Copynumber: 4.6 Consensus size: 75
42324447 GTAGATTCAA
**
42324457 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
*
42324522 GTGGGATCAG
66 GTGGAATCAG
*
42324532 CACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
42324597 GTGGAATCAG
66 GTGGAATCAG
**
42324607 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
*
42324672 GTGGGATCAG
66 GTGGAATCAG
*
42324682 CACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
42324747 GTGGAATCAG
66 GTGGAATCAG
42324757 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
42324803 NNNNNNNNNN
Statistics
Matches: 258, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 258 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (75 bp):
CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACG
GTGGAATCAG
Found at i:42324616 original size:42 final size:42
Alignment explanation
Indices: 42324557--42324768 Score: 235
Period size: 42 Copynumber: 5.5 Consensus size: 42
42324547 AATGATTCGG
*
42324557 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
*
42324599 GGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
**
42324632 GGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
* *
42324674 GGGATCAGCACTTAGCAA-CCAC--CA-A--T--GATTCGG-
1 GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
*
42324707 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
42324749 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
42324769 ACCAATGAGT
Statistics
Matches: 140, Mismatches: 12, Indels: 36
0.74 0.06 0.19
Matches are distributed among these distances:
33 35 0.25
34 14 0.10
35 1 0.01
36 8 0.06
37 2 0.01
38 2 0.01
39 8 0.06
40 1 0.01
41 14 0.10
42 55 0.39
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCACTTCACATTTAAGATACGGT
Found at i:42324728 original size:150 final size:150
Alignment explanation
Indices: 42324457--42324802 Score: 692
Period size: 150 Copynumber: 2.3 Consensus size: 150
42324447 GTAGATTCAA
42324457 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
42324522 GTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACAT
66 GTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACAT
42324587 TTAAGATACGGTGGAATCAG
131 TTAAGATACGGTGGAATCAG
42324607 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
42324672 GTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACAT
66 GTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACAT
42324737 TTAAGATACGGTGGAATCAG
131 TTAAGATACGGTGGAATCAG
42324757 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
1 CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCC
42324803 NNNNNNNNNN
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 196 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (150 bp):
CACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACG
GTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCACAT
TTAAGATACGGTGGAATCAG
Found at i:42325845 original size:116 final size:112
Alignment explanation
Indices: 42325604--42325860 Score: 252
Period size: 116 Copynumber: 2.2 Consensus size: 112
42325594 ATAAATTTGG
* * *
42325604 TGCTGGCCATCTACTTGCCAGCACC-TAATTTTTTTTAAAAAAATGACATTGGTGCTAGCCATCA
1 TGCTGGCCATCTAC-TGCCAGCACCAAAATTTTTTTTAAAAAAATGACACTGGTGCCAGCCATCA
* * *
42325668 GTGTCCCAAAGTAAAAAAAATGCATTGGGAGCCGAAAATTGAACTTGG
65 GTGTCCCAAAATAAAAAAAATGCATTGGGAGCCAAAAATTGAACTTGC
* * ** * * * *
42325716 TGCCGACCATCTACTAGCCAGCACCAAAATTTTTTTT-TTACAAT-ACACTGGTGCCGGTCATTA
1 TGCTGGCCATCTACT-GCCAGCACCAAAATTTTTTTTAAAAAAATGACACTGGTGCCAGCCATCA
* *
42325779 GTGTCCCAAAATAAAAAAAAATAATTGCCTTGGG-GACCAAAAATTGTACTTGC
65 GTGTCCCAAAAT---AAAAAA-AA-TGCATTGGGAG-CCAAAAATTGAACTTGC
*
42325832 TGCTGGCCATCTACTGACCAGCACAAAAA
1 TGCTGGCCATCTACTG-CCAGCACCAAAA
42325861 AAAACATTTT
Statistics
Matches: 117, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
111 26 0.22
112 25 0.21
113 10 0.09
114 6 0.05
115 4 0.03
116 46 0.39
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (112 bp):
TGCTGGCCATCTACTGCCAGCACCAAAATTTTTTTTAAAAAAATGACACTGGTGCCAGCCATCAG
TGTCCCAAAATAAAAAAAATGCATTGGGAGCCAAAAATTGAACTTGC
Found at i:42326018 original size:173 final size:168
Alignment explanation
Indices: 42325710--42326091 Score: 429
Period size: 173 Copynumber: 2.3 Consensus size: 168
42325700 CGAAAATTGA
* * *
42325710 ACTTGGTGCCGACCATCTAC-TAGCCAGCACC-AAAA-TTTTTTTTTTACAATACACTGGTGCCG
1 ACTTGGTGCCGGCCAT-TACATGGCCAGCACCAAAAATTTTTTTTTTTACAATACACTGGTGCAG
* * * * * *
42325772 GTCATTAGTGTCCCAAAATAAAAAAAAATAATTGCCTTGGGGACCAAAAATTGTACTTGCTGCTG
65 GCCATCAGTGTCCCAAAATAAAAAAAAATAAGTGCCTTGGGAACCAAAAATTGTACCTGCTGCCG
42325837 GCCATCTACTGACCAGCACAAAAAAAAACATTTTTTTATTAAATGT
130 GCCATCTACTGACCAGCAC-----AAAA-ATTTTTTT-TTAAATGT
* * *
42325883 ACTTGGTGCTGGCCATTACATGGCCATCACCAAAAATTTTTATTTTTTA-AATGCACTGGTGCAG
1 ACTTGGTGCCGGCCATTACATGGCCAGCACCAAAAATTTTT-TTTTTTACAATACACTGGTGCAG
* * * *
42325947 GCCATCAGTGTCCCAAAGT-AAAAAAAA-AAGTGTCTTGGGAACCGAAAATTGTACCTGGTGCCG
65 GCCATCAGTGTCCCAAAATAAAAAAAAATAAGTGCCTTGGGAACCAAAAATTGTACCTGCTGCCG
* * * *
42326010 GTCATCTACTGGCCAGCACCAAAATTTTTTTTTTAATGT
130 GCCATCTACTGACCAGCACAAAAATTTTTTTTTAAATGT
*
42326049 -CTCTGGTGCCGGCCATTACATGGCCAGAACC-AAAATTTTTTTT
1 ACT-TGGTGCCGGCCATTACATGGCCAGCACCAAAAATTTTTTTT
42326092 AAATACTGGT
Statistics
Matches: 181, Mismatches: 23, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
164 3 0.02
165 11 0.06
166 32 0.18
167 8 0.04
168 3 0.02
172 3 0.02
173 69 0.38
174 12 0.07
175 33 0.18
176 7 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (168 bp):
ACTTGGTGCCGGCCATTACATGGCCAGCACCAAAAATTTTTTTTTTTACAATACACTGGTGCAGG
CCATCAGTGTCCCAAAATAAAAAAAAATAAGTGCCTTGGGAACCAAAAATTGTACCTGCTGCCGG
CCATCTACTGACCAGCACAAAAATTTTTTTTTAAATGT
Found at i:42326520 original size:29 final size:28
Alignment explanation
Indices: 42326487--42326548 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
42326477 AAAGCCGTTT
42326487 TTTTTTCAAAATTTACCGAAATGGGCCGA
1 TTTTTTCAAAATTTACCGAAATGGGCC-A
* ** *
42326516 TTTTTTGATTATTTACCGGAATGGGCCA
1 TTTTTTCAAAATTTACCGAAATGGGCCA
42326544 TTTTT
1 TTTTT
42326549 CGCGAAATCG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (28 bp):
TTTTTTCAAAATTTACCGAAATGGGCCA
Found at i:42334363 original size:44 final size:44
Alignment explanation
Indices: 42334096--42334363 Score: 172
Period size: 44 Copynumber: 6.2 Consensus size: 44
42334086 GAGAAAGCAA
* * * *
42334096 ATCTTATCCCCCTAAAGTTGCAGTGCG-GCAGATTAAAGATGGC-G
1 ATCTTATCTCCCTAAGGTTGCAGTG-GAGCAGATTAAACAT-CCAG
* *
42334140 AATCTTATCTCCCTGAA-GTTGGAGTGGAGTAGATTAAAGCCAAT--AG
1 -ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGATTAAA--C-ATCCAG
* * *
42334186 -TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTAAA-AT-CAG
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAACATCCAG
* * *
42334227 ATCTTATCTCCCTAAGGTTGCAG-AGAGCAGA-T-CACATCAAG
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAACATCCAG
* *
42334268 -TCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACTGAAA-A-CCTAA
1 ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGA-TTAAACATCC-AG
* **
42334311 ATCCTATCTCCCTAAGGTTGCAGTGGAGTGGATTAAAACATCCAG
1 ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATT-AAACATCCAG
42334356 AT-TTATCT
1 ATCTTATCT
42334364 TTAAAGTTGC
Statistics
Matches: 175, Mismatches: 26, Indels: 45
0.71 0.11 0.18
Matches are distributed among these distances:
39 1 0.01
40 24 0.14
41 19 0.11
42 21 0.12
43 6 0.03
44 64 0.37
45 33 0.19
46 5 0.03
48 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGGTTGCAGTGGAGCAGATTAAACATCCAG
Found at i:42334373 original size:126 final size:129
Alignment explanation
Indices: 42334142--42334430 Score: 335
Period size: 126 Copynumber: 2.3 Consensus size: 129
42334132 AGATGGCGAA
* * * * *
42334142 TCTTATCTCCCTGAAGTTGGAGTGGAGTAGA-TTAAAGCCAATAGTCCTATCTCCCTGAGGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACCAATAGTCCTATCTCCCTAAGGTTGC
* *
42334206 AGTGGAGCGGATTAAAATCAGATCTTATCTCCCTAAGGTTGCAG-AG-AGCAGATCACA-T-CAA
66 AGTGGAGCGGATTAAAATCAGATCTTATCT-CCTAAAGTTGCAGTAGAAGAAGATCA-AGTACAA
42334267 G
129 G
42334268 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACCTAA-A-TCCTATCTCCCTAAGGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACC-AATAGTCCTATCTCCCTAAGGTTG
* * * * *
42334331 CAGTGGAGTGGATTAAAACATCCAGAT-TTATCT-TTAAAGTTGCAGTAGAATAAGTTGAAGTCA
65 CAGTGGAGCGGATT-AAA-AT-CAGATCTTATCTCCTAAAGTTGCAGTAGAAGAAGATCAAGT-A
42334394 CAAG
126 CAAG
*
42334398 TCTTATCTCCCTGAAGTTGCAGTGCAGCAGACT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
42334431 AAAGATAGCA
Statistics
Matches: 140, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
126 70 0.50
127 13 0.09
128 16 0.11
129 5 0.04
130 36 0.26
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACCAATAGTCCTATCTCCCTAAGGTTGC
AGTGGAGCGGATTAAAATCAGATCTTATCTCCTAAAGTTGCAGTAGAAGAAGATCAAGTACAAG
Found at i:42335773 original size:14 final size:13
Alignment explanation
Indices: 42335754--42335792 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
42335744 ACTGTTAAAT
42335754 TGTATTATTATTA
1 TGTATTATTATTA
42335767 CTGTATTATTATTA
1 -TGTATTATTATTA
42335781 -GTATTTATTATT
1 TGTA-TTATTATT
42335793 GTGGTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 8 0.33
14 13 0.54
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (13 bp):
TGTATTATTATTA
Found at i:42339484 original size:24 final size:25
Alignment explanation
Indices: 42339456--42339509 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
42339446 TGCGATCTTT
42339456 TTTTTGAACCAA-TATACTTTCGGTC
1 TTTTTGAA-CAATTATACTTTCGGTC
* * *
42339481 TTTTTGAATAATTATTCTTTCGTTC
1 TTTTTGAACAATTATACTTTCGGTC
42339506 TTTT
1 TTTT
42339510 GGATTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.20, C:0.15, G:0.09, T:0.56
Consensus pattern (25 bp):
TTTTTGAACAATTATACTTTCGGTC
Found at i:42340311 original size:16 final size:16
Alignment explanation
Indices: 42340290--42340369 Score: 67
Period size: 16 Copynumber: 4.9 Consensus size: 16
42340280 AGATTCAATC
*
42340290 CAAAAAAAACAAAAAA
1 CAAAAAAAAGAAAAAA
42340306 CAAAAAAAA-AACAAAA
1 CAAAAAAAAGAA-AAAA
*
42340322 -AAAAGAAAGAAAAAA
1 CAAAAAAAAGAAAAAA
*
42340337 GAAAAGAAAAGAAAAGAA
1 CAAAA-AAAAGAAAA-AA
*
42340355 -AGAGAAAAAGAAAAA
1 CA-AAAAAAAGAAAAA
42340370 TAGGAATAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
15 13 0.24
16 20 0.36
17 18 0.33
18 4 0.07
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAGAAAAAA
Found at i:42340334 original size:11 final size:11
Alignment explanation
Indices: 42340291--42340367 Score: 54
Period size: 10 Copynumber: 6.8 Consensus size: 11
42340281 GATTCAATCC
*
42340291 AAAAA-AAACA
1 AAAAAGAAAGA
*
42340301 AAAAACAAA-A
1 AAAAAGAAAGA
42340311 AAAAA-ACAA-A
1 AAAAAGA-AAGA
42340321 AAAAAGAAAGA
1 AAAAAGAAAGA
42340332 AAAAAGAAAAGAAA
1 AAAAAG-AAAG--A
42340346 AGAAAAGAAAGA
1 A-AAAAGAAAGA
42340358 GAAAAAGAAA
1 -AAAAAGAAA
42340368 AATAGGAATA
Statistics
Matches: 58, Mismatches: 0, Indels: 16
0.78 0.00 0.22
Matches are distributed among these distances:
9 1 0.02
10 21 0.36
11 11 0.19
12 13 0.22
13 1 0.02
14 6 0.10
15 5 0.09
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:42340343 original size:5 final size:5
Alignment explanation
Indices: 42340308--42340368 Score: 61
Period size: 5 Copynumber: 11.8 Consensus size: 5
42340298 ACAAAAAACA
* * *
42340308 AAAAA AAAAC AAAA- AAAAG AAAGAA AAAAG AAAAG AAAAG AAAAG AAAGAG
1 AAAAG AAAAG AAAAG AAAAG AAA-AG AAAAG AAAAG AAAAG AAAAG AAA-AG
42340359 AAAAAG AAAA
1 -AAAAG AAAA
42340369 ATAGGAATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
4 4 0.08
5 34 0.69
6 8 0.16
7 3 0.06
ACGTcount: A:0.84, C:0.02, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:42340360 original size:21 final size:20
Alignment explanation
Indices: 42340291--42340368 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 20
42340281 GATTCAATCC
* *
42340291 AAAAAAAACAAAA-AACA-A
1 AAAAAAAAGAAAAGAAAAGA
*
42340309 AAAAAAAACAAAA-AAAAGA
1 AAAAAAAAGAAAAGAAAAGA
42340328 AAGAAAAAAGAAAAGAAAAGA
1 AA-AAAAAAGAAAAGAAAAGA
*
42340349 AAAGAAAGAGAAAAAGAAAA
1 AAA-AAAAAG-AAAAGAAAA
42340369 ATAGGAATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 16 0.31
19 3 0.06
20 11 0.21
21 13 0.25
22 9 0.17
ACGTcount: A:0.85, C:0.04, G:0.12, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAAAAGAAAAGA
Found at i:42340369 original size:1 final size:1
Alignment explanation
Indices: 42340291--42340351 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
42340281 GATTCAATCC
* * * * * * * *
42340291 AAAAAAAACAAAAAACAAAAAAAAAACAAAAAAAAGAAAGAAAAAAGAAAAGAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
42340352 GAAAGAGAAA
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.87, C:0.05, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:42340896 original size:6 final size:7
Alignment explanation
Indices: 42340884--42340925 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
42340874 AAAATAACGA
42340884 AAAAATG
1 AAAAATG
42340891 -AAAATG
1 AAAAATG
42340897 AAAAATG
1 AAAAATG
42340904 AAAAATG
1 AAAAATG
*
42340911 AAAAAAG
1 AAAAATG
42340918 TAAAAATG
1 -AAAAATG
42340926 GAGAGGCTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
6 6 0.19
7 19 0.61
8 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:42340901 original size:14 final size:15
Alignment explanation
Indices: 42340868--42340925 Score: 59
Period size: 15 Copynumber: 3.8 Consensus size: 15
42340858 GTAAAAAATG
42340868 AAATGAAAAATAACGAAA
1 AAATGAAAAAT---GAAA
42340886 AAATG-AAAATG-AA
1 AAATGAAAAATGAAA
42340899 AAATGAAAAATGAAA
1 AAATGAAAAATGAAA
42340914 AAA-GTAAAAATG
1 AAATG-AAAAATG
42340926 GAGAGGCTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.19
14 8 0.22
15 12 0.32
17 5 0.14
18 5 0.14
ACGTcount: A:0.71, C:0.02, G:0.14, T:0.14
Consensus pattern (15 bp):
AAATGAAAAATGAAA
Found at i:42342266 original size:88 final size:88
Alignment explanation
Indices: 42342153--42343031 Score: 1373
Period size: 88 Copynumber: 10.0 Consensus size: 88
42342143 CGGTGAAACT
* * * * *
42342153 TCAGCCTTGTCTCCTTGAGTAGTAGTAGAATAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
* ** *
42342218 GACAGTAAAGTAGATCAAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* * *
42342241 TAAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTAAAAATAGCAGATATTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
42342306 GGCAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* *
42342329 TCAACCTTGTCTCCTTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
*
42342394 GGCAGCGAAGTAGATCGAAGACA
66 GGCAGCGAAGTAGATCGAAGACC
* * *
42342417 TCAGCCTTGTCTCCTTGAGTAGTAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
*
42342482 GGTAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
*
42342505 TCAGCCTTGTCTTCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
42342570 GGCAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* * *
42342593 TCAGCCTTGTCTCCCTGAGTAGTAGTGGGGTAGGTTGAAAATAGCAGATCTTGTCTTTCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
*
42342658 GGCAGCGAAGTAGATCAAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* *
42342681 TCAGCCTTGTCTCCCTGAGTAGTAATGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
42342746 GGCAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* * * * *
42342769 TCAGCCTTGTATCCCTAAGTAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTATATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
42342834 GGCAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* *
42342857 TCAACCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCCTGTCTTCCTGTATT
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
42342922 GGCAGCGAAGTAGATCGAAGACC
66 GGCAGCGAAGTAGATCGAAGACC
* * * * *
42342945 TCAGCCTTGTCTCTCTGAGCAGTAATGGAGTAGGTTGAATATAGCAGATCTTG-CATTCCTGAAC
1 TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTC-TTCCTGTAT
* * *
42343009 TGGTAGTGAAGCAGATCGAAGAC
65 TGGCAGCGAAGTAGATCGAAGAC
42343032 ACCAGTTTTA
Statistics
Matches: 731, Mismatches: 59, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
87 1 0.00
88 730 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (88 bp):
TCAGCCTTGTCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATT
GGCAGCGAAGTAGATCGAAGACC
Found at i:42343462 original size:44 final size:41
Alignment explanation
Indices: 42343429--42343592 Score: 116
Period size: 42 Copynumber: 3.9 Consensus size: 41
42343419 AAGCCAATAG
* *
42343429 TCCTATCTCCCTGAGGTTGCAGAAGAGCGGATTAAAATCAGA
1 TCCTATCTCCCTAAGGTTGCAG-AGAGCGGATTAAAACCAGA
* * * * * *
42343471 TCTTATCTCCCTAAGGTTGCAGAGAGCAGATCACATCAAG-
1 TCCTATCTCCCTAAGGTTGCAGAGAGCGGATTAAAACCAGA
* * * * * *
42343511 TCTTAGCTCCCTGAA-GTTGCAGTAGAGCAGACTGAAGACCTAAA
1 TCCTATCTCCCT-AAGGTTGCAG-AGAGCGGA-TTAAAACC-AGA
* *
42343555 TCCTATCTCCCTAAGGTTGCAGTGGAGTGGATTAAAAC
1 TCCTATCTCCCTAAGGTTGCAG-AGAGCGGATTAAAAC
42343593 ATTCAGATTT
Statistics
Matches: 94, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
40 18 0.19
41 22 0.23
42 23 0.24
43 8 0.09
44 23 0.24
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (41 bp):
TCCTATCTCCCTAAGGTTGCAGAGAGCGGATTAAAACCAGA
Found at i:42343530 original size:40 final size:42
Alignment explanation
Indices: 42343435--42343541 Score: 114
Period size: 40 Copynumber: 2.6 Consensus size: 42
42343425 ATAGTCCTAT
* * *
42343435 CTCCCTGAGGTTGCAGAAGAGCGGATTAAAATCAGATCTTAT
1 CTCCCTGAAGTTGCAGAAGAGCAGATTAAAATCAGATCTTAG
* *
42343477 CTCCCT-AAGGTTGCAG-AGAGCAGA-TCACATCA-AGTCTTAG
1 CTCCCTGAA-GTTGCAGAAGAGCAGATTAAAATCAGA-TCTTAG
*
42343517 CTCCCTGAAGTTGCAGTAGAGCAGA
1 CTCCCTGAAGTTGCAGAAGAGCAGA
42343542 CTGAAGACCT
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
39 1 0.02
40 24 0.43
41 18 0.32
42 13 0.23
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (42 bp):
CTCCCTGAAGTTGCAGAAGAGCAGATTAAAATCAGATCTTAG
Found at i:42343616 original size:126 final size:129
Alignment explanation
Indices: 42343385--42343678 Score: 318
Period size: 126 Copynumber: 2.3 Consensus size: 129
42343375 AGATGGTGAA
* * * *
42343385 TCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTAAAG-CCAATAGTCCTATCTCCCTGAGGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACCAATAGTCCTATCTCCCTAAGGTTGC
* *
42343449 AGAAGAGCGGATTAAAATCAGATCTTATCTCCCTAAGGTTGCAG-AG-AGCAGATCACA-T-CAA
66 AGAAGAGCGGATTAAAATCAGATCTTATCT-CCTAAAGTTGCAGTAGAAGAAGATCA-AGTACAA
42343510 G
129 G
* * *
42343511 TCTTAGCTCCCTGAAGTTGCAGTAGAGCAGACTGAAGACCTAA-A-TCCTATCTCCCTAAGGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACC-AATAGTCCTATCTCCCTAAGGTTG
** * * * * *
42343574 CAGTGGAGTGGATTAAAACATTCAGAT-TTATCT-TTAAAGTTGCAGTAGAATAAGTTGAAGTCA
65 CAGAAGAGCGGATT-AAA-A-TCAGATCTTATCTCCTAAAGTTGCAGTAGAAGAAGATCAAGT-A
42343637 CAAG
126 CAAG
42343641 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGA
42343679 TAGCAAATTT
Statistics
Matches: 139, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
126 70 0.50
127 9 0.06
128 15 0.11
129 6 0.04
130 39 0.28
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACCAATAGTCCTATCTCCCTAAGGTTGC
AGAAGAGCGGATTAAAATCAGATCTTATCTCCTAAAGTTGCAGTAGAAGAAGATCAAGTACAAG
Found at i:42345010 original size:14 final size:13
Alignment explanation
Indices: 42344991--42345029 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
42344981 ACTGTTAAAT
42344991 TGTATTATTATTA
1 TGTATTATTATTA
42345004 CTGTATTATTATTA
1 -TGTATTATTATTA
42345018 -GTATTTATTATT
1 TGTA-TTATTATT
42345030 GTGGTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 8 0.33
14 13 0.54
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (13 bp):
TGTATTATTATTA
Found at i:42345479 original size:24 final size:24
Alignment explanation
Indices: 42345432--42345479 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
42345422 TTTATTTTCA
*
42345432 TGACTTTTATACATATATACGCAT
1 TGACTTTTATACATACATACGCAT
*
42345456 TGACATTTTATA-ATACATATGCAT
1 TGAC-TTTTATACATACATACGCAT
42345480 CTTTTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (24 bp):
TGACTTTTATACATACATACGCAT
Found at i:42347864 original size:14 final size:14
Alignment explanation
Indices: 42347845--42347871 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
42347835 CTTTTTCACA
42347845 AAACTTTATTGGAC
1 AAACTTTATTGGAC
42347859 AAACTTTATTGGA
1 AAACTTTATTGGA
42347872 ATTTGGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (14 bp):
AAACTTTATTGGAC
Found at i:42348530 original size:24 final size:23
Alignment explanation
Indices: 42348477--42348530 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
42348467 ATTTTCATAT
*
42348477 ATTTTATGTTTTAATTTTTTTGA
1 ATTTTATGTTTAAATTTTTTTGA
*
42348500 AGATTTATGTTTAAATATTTGTTTG-
1 A-TTTTATGTTTAAAT-TTT-TTTGA
42348525 ATTTTA
1 ATTTTA
42348531 AAAATATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
23 1 0.04
24 16 0.64
25 4 0.16
26 4 0.16
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (23 bp):
ATTTTATGTTTAAATTTTTTTGA
Done.