Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 128 of 210
Found at i:42762255 original size:267 final size:267
Alignment explanation
Indices: 42761650--42762262 Score: 938
Period size: 267 Copynumber: 2.3 Consensus size: 267
42761640 TTGAAATTCC
* * * * *
42761650 AAGATTCACCGTCATAGCTTCAATTTGTTTCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
1 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
* * *
42761715 GGCTTCAGTCTTTTAAATTGCAATGTTGAGGAAACGAGATTCGCCGTTGTAGCTTCAATCTATTC
66 GGCTTCAGTCTTTTAAATTACAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTC
* *
42761780 CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGTTTTAATCTGCTCCACTGTAATGCTAAA
131 CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAA
* *
42761845 GAGATAGGATTCGCTGCCCACAGCTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
196 GAGATAGGATTCACTGCCCACAACTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
42761910 GGGAGAT
261 GGGAGAT
* *
42761917 AAGATTCACCGTCGTGGCTTCAATCTGCTCCACTACAACGCCAGGGAAGTAAGACTCGCAGTCGC
1 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
*
42761982 GGCTTCAGTCTTTTAAATTACAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTC
66 GGCTTCAGTCTTTTAAATTACAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTC
* * *
42762047 CATTATACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCTACTGTAATGCTAAA
131 CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAA
* * * *
42762112 GAGATAGGATTCATTGCCCACAACTTTAATCCGCTCCACTTCAGCTACTCCAAGCCTTAACACTA
196 GAGATAGGATTCACTGCCCACAACTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
42762177 GGGAGAT
261 GGGAGAT
*** * * * * * *
42762184 AAGATTCGTTGTCGTGGCTTCAATCTGCTCCGCTACAATGCCAGGGAAATAAGATTCCCCGTTGT
1 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
*
42762249 GGCTTCAATCTTTT
66 GGCTTCAGTCTTTT
42762263 CCATTGCAAT
Statistics
Matches: 312, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
267 312 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (267 bp):
AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGC
GGCTTCAGTCTTTTAAATTACAATGTTGAGGAAACGAGATTCACCGTCGTAGCTTCAATCTATTC
CACTACACCGCCAGGGAAGTAAGATTCACCGTCGTGGCTTCAATCTGCTCCACTGTAATGCTAAA
GAGATAGGATTCACTGCCCACAACTTTAATCCACTCCACTTCAGCTAATCCAAACCTTAACACTA
GGGAGAT
Found at i:42768577 original size:19 final size:19
Alignment explanation
Indices: 42768553--42768595 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
42768543 CGTAATTCCA
42768553 TGGTACTTTTTTACTATCT
1 TGGTACTTTTTTACTATCT
42768572 TGGTACTTTTTTACTATCT
1 TGGTACTTTTTTACTATCT
42768591 TGGTA
1 TGGTA
42768596 AGAAAAGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (19 bp):
TGGTACTTTTTTACTATCT
Found at i:42774158 original size:15 final size:15
Alignment explanation
Indices: 42774138--42774167 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
42774128 ATAGATGTCG
42774138 CAATAACAAATACAA
1 CAATAACAAATACAA
*
42774153 CAATAATAAATACAA
1 CAATAACAAATACAA
42774168 TAACGGCATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17
Consensus pattern (15 bp):
CAATAACAAATACAA
Found at i:42774639 original size:22 final size:21
Alignment explanation
Indices: 42774591--42774642 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
42774581 ATATATAGAT
42774591 ATTAAAAAAATAATTACATAA
1 ATTAAAAAAATAATTACATAA
* *
42774612 AATAAAAAAATAATTACATTAC
1 ATTAAAAAAATAATTACA-TAA
42774634 ATTAAAAAA
1 ATTAAAAAA
42774643 TTTAAATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (21 bp):
ATTAAAAAAATAATTACATAA
Found at i:42775177 original size:12 final size:12
Alignment explanation
Indices: 42775160--42775185 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42775150 TATTCTTCCT
42775160 TCCAAAAAAAAC
1 TCCAAAAAAAAC
42775172 TCCAAAAAAAAC
1 TCCAAAAAAAAC
42775184 TC
1 TC
42775186 TCGCCCCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.27, G:0.00, T:0.12
Consensus pattern (12 bp):
TCCAAAAAAAAC
Found at i:42782720 original size:30 final size:30
Alignment explanation
Indices: 42782682--42782807 Score: 137
Period size: 30 Copynumber: 4.2 Consensus size: 30
42782672 TTAGCCCGAA
* *
42782682 TGAG-AAATCTATTATAATGTCAGCTTGTA
1 TGAGCAAATCTATTATAATGACAGCTTGTG
** *
42782711 TGAGCAAATCTATTATAACAACAACTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
*
42782741 TGAGCAAATCCATTATAATGACAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
* * * * **
42782771 TGAGCAATTTTATCATACTGTTAGCTTGTG
1 TGAGCAAATCTATTATAATGACAGCTTGTG
42782801 TGAGCAA
1 TGAGCAA
42782808 TATATTAACC
Statistics
Matches: 80, Mismatches: 16, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
29 4 0.05
30 76 0.95
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (30 bp):
TGAGCAAATCTATTATAATGACAGCTTGTG
Found at i:42792709 original size:17 final size:17
Alignment explanation
Indices: 42792689--42792733 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
42792679 TAAAAAAACA
42792689 AAAAGAAAATA-AAATTT
1 AAAA-AAAATATAAATTT
*
42792706 AAAAAAAAGTATCAATTT
1 AAAAAAAA-TATAAATTT
42792724 AAAAAAAATA
1 AAAAAAAATA
42792734 CAGAAAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 4 0.16
17 8 0.32
18 13 0.52
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (17 bp):
AAAAAAAATATAAATTT
Found at i:42797584 original size:50 final size:50
Alignment explanation
Indices: 42797469--42797661 Score: 273
Period size: 50 Copynumber: 3.8 Consensus size: 50
42797459 GATATTAACA
* ** *
42797469 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
42797520 TGTCC-ATGTCATGTCCCAGACATGGTCTTACGAT-GGACCTCTCATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
*
42797570 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACGTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
42797620 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGTACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
42797662 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
49 4 0.03
50 91 0.71
51 29 0.23
52 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:42797660 original size:100 final size:101
Alignment explanation
Indices: 42797469--42797661 Score: 302
Period size: 100 Copynumber: 1.9 Consensus size: 101
42797459 GATATTAACA
* * *
42797469 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGTCCATGTCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACGTTCTCATATCGGTGTCCACGCCATGT
42797534 CCCAGACATGGTCTTACGATGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACGATGGACCTCTCATCTCGG
* *
42797570 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACG-TCTCATCTCGGTG-CCAACGCCATG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACGTTCTCATATCGGTGTCC-ACGCCATG
42797633 TCCCAGACATGGTCTTAC-ATGGTACCTCT
65 TCCCAGACATGGTCTTACGATGG-ACCTCT
42797662 TTACCCAAAT
Statistics
Matches: 85, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
99 6 0.07
100 42 0.49
101 37 0.44
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACGTTCTCATATCGGTGTCCACGCCATGT
CCCAGACATGGTCTTACGATGGACCTCTCATCTCGG
Found at i:42811127 original size:2 final size:2
Alignment explanation
Indices: 42811120--42811147 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
42811110 ACAATAAGAA
42811120 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
42811148 TTCATGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42816032 original size:21 final size:20
Alignment explanation
Indices: 42815996--42816035 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
42815986 GAAAATGGTT
*
42815996 TAAAATTAATTATTAATTTA
1 TAAAATTAAATATTAATTTA
42816016 TAAAATTGAAATATTAATTT
1 TAAAATT-AAATATTAATTT
42816036 TTTGAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAAAATTAAATATTAATTTA
Found at i:42818756 original size:24 final size:26
Alignment explanation
Indices: 42818723--42818770 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
42818713 GCTAGAGGAC
*
42818723 ATTTTCTACTGTG-A-GACTTATGTT
1 ATTTTCTACTATGCATGACTTATGTT
*
42818747 ATTTTGTACTATGCATGACTTATG
1 ATTTTCTACTATGCATGACTTATG
42818771 GGGGGTGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 1 0.05
26 8 0.40
ACGTcount: A:0.23, C:0.12, G:0.17, T:0.48
Consensus pattern (26 bp):
ATTTTCTACTATGCATGACTTATGTT
Found at i:42821758 original size:21 final size:21
Alignment explanation
Indices: 42821732--42821792 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
42821722 ACGCACCAAT
*
42821732 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
*
42821753 AGAAGCTCAAAAGAGCTGAAT
1 AGAAGCTCAAAAGAGCTGAAC
*
42821774 AGAAGCTTAAAAGAGCTGA
1 AGAAGCTCAAAAGAGCTGA
42821793 TCCACTAGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.46, C:0.15, G:0.25, T:0.15
Consensus pattern (21 bp):
AGAAGCTCAAAAGAGCTGAAC
Found at i:42823604 original size:26 final size:26
Alignment explanation
Indices: 42823574--42823632 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
42823564 GAAGCTCCGG
*
42823574 GAGCCATTAATCAGGAAGTTCACAAA
1 GAGCCATTAATCAGGAAGCTCACAAA
* * * *
42823600 GAGCCTTTAATCGGGTAGCTCACGAA
1 GAGCCATTAATCAGGAAGCTCACAAA
42823626 GAGCCAT
1 GAGCCAT
42823633 ATATCGGGAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAGCTCACAAA
Found at i:42823742 original size:25 final size:25
Alignment explanation
Indices: 42823714--42823777 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
42823704 GAAAAGCTAT
*
42823714 TAACGGGAAGCTTGCAAGAACCATA
1 TAACGGGAAGCTCGCAAGAACCATA
42823739 TAACGGGAAGCTCGCAAGAACCATA
1 TAACGGGAAGCTCGCAAGAACCATA
* **
42823764 GAATAGGAAGCTCG
1 TAACGGGAAGCTCG
42823778 AGAGAGCCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (25 bp):
TAACGGGAAGCTCGCAAGAACCATA
Found at i:42828740 original size:23 final size:23
Alignment explanation
Indices: 42828714--42828775 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
42828704 TAATATCCCA
*
42828714 AAAATTACTACTGTAATACTTCG
1 AAAATTACTACTGTAATACCTCG
42828737 AAAATTACTACTGTAATACCTCG
1 AAAATTACTACTGTAATACCTCG
* *
42828760 AAAATTAATACAGTAA
1 AAAATTACTACTGTAA
42828776 GAAAGTAGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (23 bp):
AAAATTACTACTGTAATACCTCG
Found at i:42831794 original size:50 final size:50
Alignment explanation
Indices: 42831740--42832226 Score: 590
Period size: 50 Copynumber: 9.8 Consensus size: 50
42831730 CATTGAAATT
*
42831740 ATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
*
42831790 ATGAGAGGTCCCATGTAAAACCATGTCTGGGACATGGCATTGGCACCT-AG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CTGAG
* * *
42831840 ATGAGAGGTCCTATGTAAGACCATGTCTAGGACATGG-AGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACTGAG
* * *
42831890 ATGAGAGGTCCTATGTAAGACTATGTCTGGGACATGGCGTTGGCACTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
*
42831940 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
* *
42831990 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
* *
42832040 ATGAGAGGTCCCATGTAAGACCATATCTGGGACATGGCGTTGGCAC-GAGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGA-G
* ** * * *
42832090 ATGAAAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCA-TCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACT-GAG
** * * * * * * * *
42832140 ATGAGAACTCCCATGTAATAACATATCGGGGATATGTCATTGGCAGT-AC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
* * * *
42832189 AAGAAACAG-CTCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGA-GGTCCCATGTAAGACCATGTCTGGGACATGGC
42832227 TTTGACATGT
Statistics
Matches: 378, Mismatches: 50, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
49 31 0.08
50 342 0.90
51 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAG
Found at i:42833078 original size:47 final size:47
Alignment explanation
Indices: 42833009--42833102 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
42832999 GTTAGACGAA
42833009 AGCCTTGTTGGTCTGGTCGGTTTATGACTGGTTATTGTTCTGTTTTG
1 AGCCTTGTTGGTCTGGTCGGTTTATGACTGGTTATTGTTCTGTTTTG
42833056 AGCCTTGTTGGTCTGGTCGGTTTATGACTGGTTATTGTTCTGTTTTG
1 AGCCTTGTTGGTCTGGTCGGTTTATGACTGGTTATTGTTCTGTTTTG
42833103 CATGCATATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.09, C:0.13, G:0.30, T:0.49
Consensus pattern (47 bp):
AGCCTTGTTGGTCTGGTCGGTTTATGACTGGTTATTGTTCTGTTTTG
Found at i:42840247 original size:18 final size:18
Alignment explanation
Indices: 42840207--42840247 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
42840197 TTAATCTTTG
42840207 ATTTA-TTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
42840224 AGTTATTTATTTTAATTTT
1 ATTTATTTATTTT-ATTTT
42840243 -TTTAT
1 ATTTAT
42840248 CTGACTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:42856582 original size:57 final size:57
Alignment explanation
Indices: 42856479--42856604 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 57
42856469 GAATAAAAAT
* * *
42856479 AATGAAAATGGAGAAATGATAAATATTTGGAAATAATTATAGTTTTCTTCAAAATGAA
1 AATGAAAATGAAGAAATGA-AAATATTTAGAAATAATTATAGTTTTCTCCAAAATGAA
* * *
42856537 AATGAAAATGAATAAATG-AAATCATTTAGAAATGATTATGGTTTTCTCCAAAATGAA
1 AATGAAAATGAAGAAATGAAAAT-ATTTAGAAATAATTATAGTTTTCTCCAAAATGAA
42856594 AATGAAAATGA
1 AATGAAAATGA
42856605 CCTGGAAATG
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
56 4 0.07
57 41 0.67
58 16 0.26
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (57 bp):
AATGAAAATGAAGAAATGAAAATATTTAGAAATAATTATAGTTTTCTCCAAAATGAA
Found at i:42863331 original size:10 final size:11
Alignment explanation
Indices: 42863305--42863330 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
42863295 TAAAAAAATA
42863305 AAAAATATTTT
1 AAAAATATTTT
42863316 AAAAATATTTT
1 AAAAATATTTT
42863327 AAAA
1 AAAA
42863331 TTAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:42863344 original size:7 final size:8
Alignment explanation
Indices: 42863327--42863355 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
42863317 AAAATATTTT
42863327 AAAATTAA
1 AAAATTAA
42863335 AAAATTAA
1 AAAATTAA
42863343 AAAATTAA
1 AAAATTAA
42863351 AAAAT
1 AAAAT
42863356 ATTTATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:42878610 original size:16 final size:16
Alignment explanation
Indices: 42878589--42878687 Score: 119
Period size: 16 Copynumber: 6.2 Consensus size: 16
42878579 TGAATTATTG
*
42878589 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
*
42878605 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
* *
42878621 ATTACAACTTTATTCC
1 ATTACAGCTCTATTCC
*
42878637 ATTATAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
42878653 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
42878669 ATTATAGCCCTATTCC
1 ATTACAGCTCTATTCC
42878685 ATT
1 ATT
42878688 CCAGTGAACC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
16 71 0.99
17 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:42878625 original size:32 final size:32
Alignment explanation
Indices: 42878589--42878687 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
42878579 TGAATTATTG
* * *
42878589 ATTACAGCTCTATTACATTACAGCTTTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
* *
42878621 ATTACAACTTTATTCCATTATAGCCTTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
*
42878653 ATTACAGCTCTATTCCATTATAGCCCTATTCC
1 ATTACAGCTCTATTCCATTATAGCCTTATTCC
42878685 ATT
1 ATT
42878688 CCAGTGAACC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 59 1.00
ACGTcount: A:0.27, C:0.26, G:0.05, T:0.41
Consensus pattern (32 bp):
ATTACAGCTCTATTCCATTATAGCCTTATTCC
Found at i:42878801 original size:16 final size:17
Alignment explanation
Indices: 42878760--42878801 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
42878750 CTCAAGTTAA
*
42878760 AAATTTGTTTAAGTTCG
1 AAATTTTTTTAAGTTCG
*
42878777 AAATATTTTTAAGTTC-
1 AAATTTTTTTAAGTTCG
42878793 AAATTTTTT
1 AAATTTTTT
42878802 CAAAACTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.52
Consensus pattern (17 bp):
AAATTTTTTTAAGTTCG
Found at i:42881572 original size:291 final size:291
Alignment explanation
Indices: 42881040--42881589 Score: 850
Period size: 291 Copynumber: 1.9 Consensus size: 291
42881030 ACTCAGTTCT
*
42881040 TCATTGATTTGTTGGTCATTGACTATTTCTTCAGTATCTGAATCGAAATATGAATTTGTATTGTT
1 TCATTGATTTGTTGGTCATTGACTATTTCTTCAGTAACTGAATCGAAATATGAATTTGTATTGTT
* * *
42881105 GACATAAGCGAGGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATTACTACTACGACAAAA
66 GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACGACAAAA
* * * * *
42881170 CAACTTGTCTGTTTTGAAATATTGACAATTTATTGAAATAAATCTTTGGATTGTGATGATGTCGT
131 CAACTTGTATGCTTTAAAAGATTGACAATTTATTGAAATAAATCTTTGGATTGTGATGATATCGT
* * * **
42881235 GGAAAAATCTAATCCCATAAATGAAAATTACTTCACTTGAAGAAACATATCTTAAGAATCAGATA
196 GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGAAGAAACATATCCAAAGAATCAGATA
42881300 TCCTAAAAAATATCTAACATTTAAGATATAC
261 TCCTAAAAAATATCTAACATTTAAGATATAC
*
42881331 TCATTGATTTGTTGGTCATTGACTATTTCTT-TGATAACTGAATCGAAATATGAATTTGTATTGT
1 TCATTGATTTGTTGGTCATTGACTATTTCTTCAG-TAACTGAATCGAAATATGAATTTGTATTGT
* * * * *
42881395 TGACATATGTAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTTCTATCACTACTATGACAAA
65 TGACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACGACAAA
*
42881460 ATAACTTGTATGCTTTAAAAGATTGACAATTTATTGAAATAAATCTTTGGATTGTGATGATATCG
130 ACAACTTGTATGCTTTAAAAGATTGACAATTTATTGAAATAAATCTTTGGATTGTGATGATATCG
** * * *
42881525 TGGAATGATATAATCCCATCAATGAAGATTAATTCACATGGAGAAACATATCCAAAGAATCAGAT
195 TGGAAAAATATAATCCCATAAATGAAAATTAATTCACATGAAGAAACATATCCAAAGAATCAGAT
42881590 CAGATCGATT
Statistics
Matches: 232, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
290 1 0.00
291 231 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (291 bp):
TCATTGATTTGTTGGTCATTGACTATTTCTTCAGTAACTGAATCGAAATATGAATTTGTATTGTT
GACATAAGCAAAGTTGCTACAATGTGTCAATAGAAGTACCCACTCCCATCACTACTACGACAAAA
CAACTTGTATGCTTTAAAAGATTGACAATTTATTGAAATAAATCTTTGGATTGTGATGATATCGT
GGAAAAATATAATCCCATAAATGAAAATTAATTCACATGAAGAAACATATCCAAAGAATCAGATA
TCCTAAAAAATATCTAACATTTAAGATATAC
Found at i:42882907 original size:22 final size:23
Alignment explanation
Indices: 42882865--42882907 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
42882855 ATATTTGAAT
*
42882865 TTTTTATATTCAATAGCAAATCA
1 TTTTTATATTCAATAACAAATCA
*
42882888 TTTTT-TATTCAATAATAAAT
1 TTTTTATATTCAATAACAAAT
42882908 GTATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (23 bp):
TTTTTATATTCAATAACAAATCA
Found at i:42887310 original size:19 final size:19
Alignment explanation
Indices: 42887288--42887328 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
42887278 TGAGAGGTAG
*
42887288 TTTC-TTTATTCTTTTTTTA
1 TTTCGTTTATT-TTATTTTA
42887307 TTTCGTTTATTTTATTTTA
1 TTTCGTTTATTTTATTTTA
42887326 TTT
1 TTT
42887329 TATTTTAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTCGTTTATTTTATTTTA
Found at i:42888772 original size:131 final size:131
Alignment explanation
Indices: 42888538--42888809 Score: 481
Period size: 131 Copynumber: 2.1 Consensus size: 131
42888528 AAAAATCTTG
*
42888538 AAAATAAAGGCAATATTCCATATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
1 AAAATAAAGGCAATATTCCATATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTAGGTTTCGA
* *
42888603 TTTTTCTTGCGTTGAATCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
42888668 A
131 A
* * *
42888669 AAAATAAAGGCAATGTTCCGTATTTGGAAATTCGAGAAGTTGTGCCCTAACTTACTAGGTTTCGA
1 AAAATAAAGGCAATATTCCATATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTAGGTTTCGA
42888734 TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
42888799 A
131 A
*
42888800 AAAACAAAGG
1 AAAATAAAGG
42888810 TGAGCTTATT
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 134 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (131 bp):
AAAATAAAGGCAATATTCCATATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTAGGTTTCGA
TTTTTCTCGCGTTGAACCTAAATAACCGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:42889368 original size:19 final size:18
Alignment explanation
Indices: 42889335--42889374 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
42889325 CTTTCATTTC
*
42889335 ATTTTTATGGTTTGCATT
1 ATTTTGATGGTTTGCATT
*
42889353 ATTTTGATGTGTTTGCTTT
1 ATTTTGATG-GTTTGCATT
42889372 ATT
1 ATT
42889375 GGTTCGAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.15, C:0.05, G:0.17, T:0.62
Consensus pattern (18 bp):
ATTTTGATGGTTTGCATT
Found at i:42894476 original size:44 final size:43
Alignment explanation
Indices: 42894365--42895023 Score: 192
Period size: 44 Copynumber: 14.7 Consensus size: 43
42894355 CATCATGGCA
* **
42894365 AATCTTATCTCCCTAAAGTTGCAGTGGAGC-AGATTGAAGCCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATAC
*
42894408 TAATCTTA-CCCCCTGAAGTTGCAGT-GAGGCAAG-TTGAAATTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGA-GCAAGATTGAAA-TAC
* * *
42894451 AAGTCTTATCTCCCTGAAGTTGCAGTGGAAC-AGACTAAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATA-C
* *
42894496 AAACATTATCTCCCTGAAGTTGCAGTGGAGC-AGGTTGAAGATAC
1 AATC-TTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATAC
* * *
42894540 AAGTCTTATCTCCCTGAAGTTGCA--GAAG-TAGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATA-C
* * * * *
42894583 GAATCTTATTTCCCTGAAGTCGCAATAGAAC-AGATTAAAGCTATAAATTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATT---G----AAA-TAC
** * * * * *
42894634 AGATCTTATCTCTTTGAAATTGTAGTAGAGC-AGA-TCATAT-C
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAATAC
** * *
42894675 AAGTCTTATCTCCCTGAAGTAACAGTGGAAC-AGACTGAAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATA-C
* * ** ** * *
42894720 GAATTTTATTTCCCTGAAGTCACAGCAGAACAGATTGAAGCTGTAAATTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-A--G-A-TTG-AAA-TAC
* * * * * *
42894771 GGATCTTATCTCTCTAAAGTTGCAGTAGAGCAA-A-TCATAT-C
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAATAC
*
42894812 AAACCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATTGAAGACCGGCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-A-----TAC
* * *
42894861 AAATCTTATCTCCCTGAAGTTGCAGTAGAG-AAGA-TCAAAGCCAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAA--TAC
* * * * * *
42894905 GAACCTTATCTCTCTGAAGTTGCAGTAGAAC-AGGTTGAAGTAAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAAT-AC
* ** * *
42894949 AAACCTTATCTCCCTGAAGTTGCAGTAAAGC-AGGTTGAAGCTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAA-ATAC
* *
42894993 TAATCCTATCTTCCTGAAGTTGCAGTGGAGC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGC
42895024 GGATTAAAAC
Statistics
Matches: 471, Mismatches: 90, Indels: 108
0.70 0.13 0.16
Matches are distributed among these distances:
40 2 0.00
41 52 0.11
42 23 0.05
43 58 0.12
44 153 0.32
45 74 0.16
46 3 0.01
47 2 0.00
48 5 0.01
49 33 0.07
50 4 0.01
51 54 0.11
52 8 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATTGAAATAC
Found at i:42894516 original size:45 final size:44
Alignment explanation
Indices: 42894448--42894564 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 44
42894438 AAGTTGAAAT
*
42894448 TACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGA
1 TACAAGACTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGA
* ** *
42894492 TAGCAA-ACATTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGA
1 TA-CAAGAC-TTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGA
*
42894537 TACAAGTCTTATCTCCCTGAAGTTGCAG
1 TACAAGACTTATCTCCCTGAAGTTGCAG
42894565 AAGTAGACTG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 26 0.41
45 38 0.59
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
TACAAGACTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGA
Found at i:42894541 original size:89 final size:87
Alignment explanation
Indices: 42894367--42894564 Score: 249
Period size: 89 Copynumber: 2.3 Consensus size: 87
42894357 TCATGGCAAA
* * * * * *
42894367 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACTAATCTTACCCCCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGACACTAAACTTACCCCCTGAAGTTGCAG
42894432 TGAGGCAAGTTGAAATTACAAG
66 TGAGGCAAGTTGAAATTACAAG
* *
42894454 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGC-AAACATTATCTCCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGACA-CTAAAC-TTA-CCCCCTGAAGTTG
*
42894518 CAGTG-GAGCAGGTTGAAGA-TACAAG
63 CAGTGAG-GCAAGTTGAA-ATTACAAG
42894543 TCTTATCTCCCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
42894565 AAGTAGACTG
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
87 37 0.38
88 5 0.05
89 54 0.56
90 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (87 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGACACTAAACTTACCCCCTGAAGTTGCAG
TGAGGCAAGTTGAAATTACAAG
Found at i:42894590 original size:132 final size:131
Alignment explanation
Indices: 42894369--42894622 Score: 293
Period size: 132 Copynumber: 1.9 Consensus size: 131
42894359 ATGGCAAATC
*
42894369 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACTAATCTTACCCCCTGAAGTTGCAGTG
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACTAATCTTACCCCCTGAAGTTGCAG-G
* * * * *
42894434 AGGCAAGTTGAAATTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCAAA
65 AAGCAAGCTGAAATTACAAGTCTTATCTCCCTGAAGTCGCAATAGAACAGACTAAAGATAGCAAA
42894499 CA
130 CA
* * * *
42894501 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATAC-AAGTCTTATCTCCCTGAAGTTGCA-
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACTAA-TCTTA-CCCCCTGAAGTTGCAG
* * *
42894564 GAAG-TAGACTGAAGA-TAGCGAA-TCTTATTTCCCTGAAGTCGCAATAGAACAGATTAAAG
64 GAAGCAAG-CTGAA-ATTA-C-AAGTCTTATCTCCCTGAAGTCGCAATAGAACAGACTAAAG
42894623 CTATAAATTA
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
130 2 0.02
131 11 0.11
132 74 0.72
133 16 0.16
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (131 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACTAATCTTACCCCCTGAAGTTGCAGGA
AGCAAGCTGAAATTACAAGTCTTATCTCCCTGAAGTCGCAATAGAACAGACTAAAGATAGCAAAC
A
Found at i:42894729 original size:137 final size:137
Alignment explanation
Indices: 42894539--42894852 Score: 429
Period size: 137 Copynumber: 2.3 Consensus size: 137
42894529 GTTGAAGATA
*
42894539 CAAGTCTTATCTCCCTGAAGTTGCA---GAAGTAGACTGAAGATAGCGAATCTTATTTCCCTGAA
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAA-CAGACTGAAGATAGCGAATCTTATTTCCCTGAA
* * * *
42894601 GTCGCAATAGAACAGATTAAAGCTATAAATTACAGATCTTATCTCTTTGAAA-TTGTAGTAGAGC
65 GTCACAACAGAACAGATTAAAGCTATAAATTACAGATCTTATCTCTCT-AAAGTTGCAGTAGAGC
*
42894665 AGATCATAT
129 AAATCATAT
** *
42894674 CAAGTCTTATCTCCCTGAAGTAACAGTGGAACAGACTGAAGATAGCGAATTTTATTTCCCTGAAG
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * * *
42894739 TCACAGCAGAACAGATTGAAGCTGTAAATTACGGATCTTATCTCTCTAAAGTTGCAGTAGAGCAA
66 TCACAACAGAACAGATTAAAGCTATAAATTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAA
42894804 ATCATAT
131 ATCATAT
** * *
42894811 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA
1 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGA
42894853 CCGGCTACAA
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
135 23 0.15
136 3 0.02
137 127 0.81
138 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (137 bp):
CAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
TCACAACAGAACAGATTAAAGCTATAAATTACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAA
ATCATAT
Found at i:42895828 original size:5 final size:5
Alignment explanation
Indices: 42895805--42895846 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
42895795 AGGTAGTTTC
*
42895805 TTTAT TTT-T TTT-C TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
42895847 AAGAATGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 7 0.21
5 27 0.79
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:42896695 original size:16 final size:15
Alignment explanation
Indices: 42896670--42896709 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
42896660 TGTTGTTCTG
42896670 TTTTATTTATATATT
1 TTTTATTTATATATT
*
42896685 TTTTCATTTATCTATT
1 TTTT-ATTTATATATT
42896701 TCTTTATTT
1 T-TTTATTT
42896710 TTCTTGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 15 0.68
17 3 0.14
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTATATATT
Found at i:42897187 original size:131 final size:131
Alignment explanation
Indices: 42896950--42897222 Score: 510
Period size: 131 Copynumber: 2.1 Consensus size: 131
42896940 GAAAATCTTG
* *
42896950 AAAATAAAGGCAATATTCTGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
1 AAAATAAAGGCAACATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
42897015 TTTTTCTCGCGTTGAACCTAAATAACTGAATATCCTATTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACTGAATATCCTATTAAAACTAAAATAAATGTGTTTTAAAT
42897080 A
131 A
42897081 AAAATAAAGGCAACATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
1 AAAATAAAGGCAACATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
*
42897146 TTTTTCTCGCGTTGAACCTAAATAACTGAATATCCTTTTAAAACTAAAATAAATGTGTTTTAAAT
66 TTTTTCTCGCGTTGAACCTAAATAACTGAATATCCTATTAAAACTAAAATAAATGTGTTTTAAAT
42897211 A
131 A
*
42897212 AAAACAAAGGC
1 AAAATAAAGGC
42897223 GAGCTTATTG
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
131 138 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (131 bp):
AAAATAAAGGCAACATTCCGTATTTAGAAATTCGAGAAGTTGTGCCCTAACTTACTGGGTTTCGA
TTTTTCTCGCGTTGAACCTAAATAACTGAATATCCTATTAAAACTAAAATAAATGTGTTTTAAAT
A
Found at i:42906194 original size:14 final size:14
Alignment explanation
Indices: 42906175--42906214 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
42906165 GTCACTACAC
42906175 TTTTCTTTTTATTT-
1 TTTTCTTTTT-TTTA
42906189 TTTTCTTTTTTTTA
1 TTTTCTTTTTTTTA
42906203 TTTTACTTTTTT
1 TTTT-CTTTTTT
42906215 CTTCTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 3 0.12
14 14 0.58
15 7 0.29
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTTTTTA
Found at i:42908593 original size:14 final size:14
Alignment explanation
Indices: 42908574--42908613 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
42908564 GTCACTACAC
42908574 TTTTCTTTTTATTT-
1 TTTTCTTTTT-TTTA
42908588 TTTTCTTTTTTTTA
1 TTTTCTTTTTTTTA
42908602 TTTTACTTTTTT
1 TTTT-CTTTTTT
42908614 CTTCTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 3 0.12
14 14 0.58
15 7 0.29
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTTTTTA
Found at i:42912778 original size:19 final size:19
Alignment explanation
Indices: 42912737--42912776 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
42912727 TCCAAAAAGA
*
42912737 TTATACTTTTTAAAATTAAT
1 TTATA-TTTTTAAAATAAAT
42912757 TTATATTTTTAAAA-AAAT
1 TTATATTTTTAAAATAAAT
42912775 TT
1 TT
42912777 TAAATTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 9 0.47
20 5 0.26
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
TTATATTTTTAAAATAAAT
Found at i:42914701 original size:40 final size:38
Alignment explanation
Indices: 42914655--42914749 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 38
42914645 CGTTTGGACA
*
42914655 AAAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTT
1 AAAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTT
*
42914693 ACATAAAACGCCGCTAAAGATCTAGCATTAGCAGCGCTTT
1 A-A-AAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTT
42914733 AAAAAAGCGCCGCTAAA
1 AAAAAA-CGCCGCTAAA
42914750 AACCTAAGCC
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
38 5 0.10
39 12 0.23
40 35 0.67
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (38 bp):
AAAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTT
Found at i:42914845 original size:41 final size:41
Alignment explanation
Indices: 42914783--42914973 Score: 274
Period size: 41 Copynumber: 4.7 Consensus size: 41
42914773 CCTTTCAGGG
* *
42914783 CTTTAGCGGCGTTTTTAAAAAAGCGCCGCTGATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* ** *
42914824 CTTTAGCGGTGTTTTTGAAAAAGCGTTGCTGATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * *
42914865 CTTTAGCGGCGTTTTTGAGAAAGCGTCGCTAATGCTTAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * *
42914906 CTTTAGCGGCATTTTTGAGAAAGCGCCGCTAATGCTCAAAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
42914947 CTTTAGCGGCGTTTTTGAAAAAGCGCC
1 CTTTAGCGGCGTTTTTGAAAAAGCGCC
42914974 ACAAAAATAT
Statistics
Matches: 135, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 135 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:42915345 original size:14 final size:15
Alignment explanation
Indices: 42915317--42915349 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
42915307 AAGGTTTATA
42915317 GATTATGGAATTAGG
1 GATTATGGAATTAGG
42915332 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
42915346 GATT
1 GATT
42915350 CTAGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:42915374 original size:42 final size:43
Alignment explanation
Indices: 42915327--42915423 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 43
42915317 GATTATGGAA
** * *
42915327 TTAGGGATTATGGATTAGG-GATTCTAGTTTAAGGGTT-GTGAT
1 TTAGGGATTATGGATTAGGTG-TTAGAGATTAAGAGTTAGTGAT
* * *
42915369 TTAGGGGTTAAGGGTTAGGTGTTAGAGATTAAGAGTTAGTGAT
1 TTAGGGATTATGGATTAGGTGTTAGAGATTAAGAGTTAGTGAT
*
42915412 TTAGGGTTTATG
1 TTAGGGATTATG
42915424 AATTTGATGT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.25, C:0.01, G:0.35, T:0.39
Consensus pattern (43 bp):
TTAGGGATTATGGATTAGGTGTTAGAGATTAAGAGTTAGTGAT
Found at i:42915678 original size:14 final size:14
Alignment explanation
Indices: 42915606--42915676 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
42915596 TTAGGGGTAC
42915606 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* ** * *
42915620 TTTATGATTTTGGGT
1 -TTAAGGGTTAGGGG
* *
42915635 TTAAGGGATATGGG
1 TTAAGGGTTAGGGG
*
42915649 ATAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
42915663 TTAAGGGTTTAGGG
1 TTAAGGG-TTAGGG
42915677 TTTAGATTAA
Statistics
Matches: 39, Mismatches: 16, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
14 24 0.62
15 15 0.38
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:42915830 original size:14 final size:14
Alignment explanation
Indices: 42915758--42915828 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
42915748 TTAGGGGTAC
42915758 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* ** * *
42915772 TTTATGATTTTGGGT
1 -TTAAGGGTTAGGGG
* *
42915787 TTAAGGGATATGGG
1 TTAAGGGTTAGGGG
*
42915801 ATAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
42915815 TTAAGGGTTTAGGG
1 TTAAGGG-TTAGGG
42915829 TTTAGATTAA
Statistics
Matches: 39, Mismatches: 16, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
14 24 0.62
15 15 0.38
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:42915876 original size:152 final size:152
Alignment explanation
Indices: 42915519--42915861 Score: 686
Period size: 152 Copynumber: 2.3 Consensus size: 152
42915509 GGAATTTGGG
42915519 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATGGATTAGGATTTAAGGTTT
1 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATGGATTAGGATTTAAGGTTT
42915584 AAGGTTTTGGGGTTAGGGGTACTTAAGGGTTAGGGGTTTATGATTTTGGGTTTAAGGGATATGGG
66 AAGGTTTTGGGGTTAGGGGTACTTAAGGGTTAGGGGTTTATGATTTTGGGTTTAAGGGATATGGG
42915649 ATAAGGGTTAGGGGTTAAGGGT
131 ATAAGGGTTAGGGGTTAAGGGT
42915671 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATGGATTAGGATTTAAGGTTT
1 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATGGATTAGGATTTAAGGTTT
42915736 AAGGTTTTGGGGTTAGGGGTACTTAAGGGTTAGGGGTTTATGATTTTGGGTTTAAGGGATATGGG
66 AAGGTTTTGGGGTTAGGGGTACTTAAGGGTTAGGGGTTTATGATTTTGGGTTTAAGGGATATGGG
42915801 ATAAGGGTTAGGGGTTAAGGGT
131 ATAAGGGTTAGGGGTTAAGGGT
42915823 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATAT
1 TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATAT
42915862 TAAATAAGGT
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
152 191 1.00
ACGTcount: A:0.26, C:0.01, G:0.30, T:0.43
Consensus pattern (152 bp):
TTAGGGTTTAGATTAATTAGTGTTTTTTAATTTATATATATTAAATGGATTAGGATTTAAGGTTT
AAGGTTTTGGGGTTAGGGGTACTTAAGGGTTAGGGGTTTATGATTTTGGGTTTAAGGGATATGGG
ATAAGGGTTAGGGGTTAAGGGT
Found at i:42915895 original size:7 final size:7
Alignment explanation
Indices: 42915872--42915910 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
42915862 TAAATAAGGT
42915872 TTAGGGG
1 TTAGGGG
**
42915879 TTAGTAG
1 TTAGGGG
42915886 TTAGGGG
1 TTAGGGG
42915893 TTAGGGG
1 TTAGGGG
42915900 TTAGGGG
1 TTAGGGG
42915907 TTAG
1 TTAG
42915911 AGTTTAAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:42916052 original size:14 final size:14
Alignment explanation
Indices: 42916033--42916064 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
42916023 GTAAAAGAGG
42916033 GGTTAGGAGTTAGA
1 GGTTAGGAGTTAGA
*
42916047 GGTTAGGGGTTAGA
1 GGTTAGGAGTTAGA
42916061 GGTT
1 GGTT
42916065 TAGGGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (14 bp):
GGTTAGGAGTTAGA
Found at i:42916070 original size:14 final size:13
Alignment explanation
Indices: 42916033--42916071 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
42916023 GTAAAAGAGG
42916033 GGTTAGGAGTTAGA
1 GGTTAGG-GTTAGA
42916047 GGTTAGGGGTTAGA
1 GGTTA-GGGTTAGA
42916061 GGTTTAGGGTT
1 GG-TTAGGGTT
42916072 TATGTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.33
Consensus pattern (13 bp):
GGTTAGGGTTAGA
Found at i:42918940 original size:14 final size:15
Alignment explanation
Indices: 42918910--42918939 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42918900 GATAGCCATA
42918910 TGGTCTGAATTTTTT
1 TGGTCTGAATTTTTT
42918925 TGGTCTGAATTTTTT
1 TGGTCTGAATTTTTT
42918940 GTGTCAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.20, T:0.60
Consensus pattern (15 bp):
TGGTCTGAATTTTTT
Found at i:42919415 original size:19 final size:19
Alignment explanation
Indices: 42919379--42919416 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
42919369 TTTTTATAAG
*
42919379 GGTGTTTTTATTTTTTGTT
1 GGTGTTTTTATTTGTTGTT
42919398 GGTG-TTTTATGTTGTTGTT
1 GGTGTTTTTAT-TTGTTGTT
42919417 TCGATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.68
Consensus pattern (19 bp):
GGTGTTTTTATTTGTTGTT
Found at i:42920086 original size:19 final size:19
Alignment explanation
Indices: 42920050--42920087 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
42920040 TTTTTATAAG
*
42920050 GGTGTTTTTATTTTTTGTT
1 GGTGTTTTTATTTGTTGTT
42920069 GGTG-TTTTATGTTGTTGTT
1 GGTGTTTTTAT-TTGTTGTT
42920088 TCGATGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.68
Consensus pattern (19 bp):
GGTGTTTTTATTTGTTGTT
Found at i:42926422 original size:46 final size:46
Alignment explanation
Indices: 42926351--42926535 Score: 325
Period size: 46 Copynumber: 4.0 Consensus size: 46
42926341 CATGGCAAAG
42926351 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
*
42926397 TGTAAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
42926443 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
42926489 TGTGAAAAGTAGGTATGGTATTTCCGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
42926535 T
1 T
42926536 ATAGCAATGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:42929651 original size:24 final size:24
Alignment explanation
Indices: 42929611--42929674 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
42929601 ATGAAATACA
42929611 TCTTTGCATTCATTTTTGAGCCAA-TAT
1 TCTTT-CATTC-TTTTTGA--CAATTAT
*
42929638 TCTTT-ATTCTTTTTGATAATTAT
1 TCTTTCATTCTTTTTGACAATTAT
42929661 TCTTTCATTCTTTT
1 TCTTTCATTCTTTT
42929675 GGACTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
22 2 0.06
23 8 0.24
24 15 0.44
25 4 0.12
27 5 0.15
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.59
Consensus pattern (24 bp):
TCTTTCATTCTTTTTGACAATTAT
Found at i:42933114 original size:132 final size:132
Alignment explanation
Indices: 42932800--42933607 Score: 918
Period size: 132 Copynumber: 6.2 Consensus size: 132
42932790 GGAGTAGGTT
* *
42932800 GATGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTAAAGCCGGTAATTCTATCTCCCT
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCT
* * * * * * *
42932865 GGGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAG---G
66 GAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATCG
**
42932927 TT
131 AA
*
42932929 GATGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTA-CTTCCC
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATC-TCCC
* ** * *
42932993 TGAGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTCCCTAATTAGTAGCGGAGTAGATC
65 TGAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATC
42933058 GAA
130 GAA
* * * *
42933061 GATGGCGGATTTTACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCAGTAATTCTA-CTTCCC
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATC-TCCC
* * * * * *
42933125 T-AGGTAACAGTGGAATAGATTGAAGGTT-TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
65 TGA-GCAGCAGTGGAATAGATTGAAGATTAT-AGATCTTACCTCCCTAGGTAGTAGTGGAGCAGA
**
42933188 TAAAA
128 TCGAA
* * * * * *
42933193 AATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCT
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCT
* * * * * * *
42933258 GGGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAG---G
66 GAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATCG
**
42933320 TT
131 AA
*
42933322 GATGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTA-CTTCCC
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATC-TCCC
* * * *
42933386 TGAGCAGCAGTGGAATAGATTGAAGATTAAAGATTTTATCTCCCTAGGTAGTAGTGGAGTAGATC
65 TGAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATC
42933451 GAA
130 GAA
** * *
42933454 GATGGAAGATTTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCT
* * * * * * * * *
42933519 GAGGAACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCTTAGGCAGTAGTGGAGTAAATCG
66 GAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATCG
42933584 AA
131 AA
* *
42933586 TATGGCGGGTTTTACCTCCCTG
1 GATGGCGGATTTTACCTCCCTG
42933608 GGGAAAAATG
Statistics
Matches: 577, Mismatches: 88, Indels: 25
0.84 0.13 0.04
Matches are distributed among these distances:
128 2 0.00
129 215 0.37
131 2 0.00
132 355 0.62
133 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
GATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCT
GAGCAGCAGTGGAATAGATTGAAGATTATAGATCTTACCTCCCTAGGTAGTAGTGGAGCAGATCG
AA
Found at i:42933430 original size:44 final size:45
Alignment explanation
Indices: 42933382--42933560 Score: 138
Period size: 44 Copynumber: 4.1 Consensus size: 45
42933372 TAATTCTACT
*
42933382 TCCCTGA-GCAGCAGTGGAATAGATTGAAGATTAAAGATTTTATC
1 TCCCTGAGGTAGCAGTGGAATAGATTGAAGATTAAAGATTTTATC
* * * ** *
42933426 TCCCT-AGGTAGTAGTGGAGTAGATCGAAGATGGAAGATTTTACC
1 TCCCTGAGGTAGCAGTGGAATAGATTGAAGATTAAAGATTTTATC
* * * * *
42933470 TCCCTAAGGTTA-CAGTGGAGTACATTGAAGCCAGT--A-ATTCTATC
1 TCCCTGAGG-TAGCAGTGGAATAGATTGAAG--ATTAAAGATTTTATC
* * * *
42933514 TCCCTGAGG-AACAGTGGAATAGATTGAAGATTACAGATCTCATC
1 TCCCTGAGGTAGCAGTGGAATAGATTGAAGATTAAAGATTTTATC
42933558 TCC
1 TCC
42933561 TTAGGCAGTA
Statistics
Matches: 105, Mismatches: 21, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 18 0.17
44 62 0.59
45 19 0.18
46 2 0.02
47 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (45 bp):
TCCCTGAGGTAGCAGTGGAATAGATTGAAGATTAAAGATTTTATC
Found at i:42933576 original size:261 final size:259
Alignment explanation
Indices: 42932787--42933578 Score: 943
Period size: 261 Copynumber: 3.0 Consensus size: 259
42932777 CCGCGGTTGC
* *
42932787 AGTGGAGTAGGTTGATGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTAAAGCCGGTA
1 AGTGGAGTAGGTTGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTA
* * * * * *
42932852 ATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTATAGACCTTA-CATCTCTCGGTTG
66 ATTCTACT-TCCCTGAGCAGCAGTGGAATAGATTGAAGATTAAAGATCTTATC-TCCCTAGGTAG
* ** * *
42932915 CAGTGGAGCAG--GTTGATGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCA
129 TAGTGGAGCAGATGAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
* * * * **
42932978 GTAATTCTA-CTTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTCCCTAATT
194 GTAATTCTATC-TCCCTGAGGAGCAGTGGAATAGATTGAAGATTATAGATCTCATCT-CCTAGGT
42933042 AGT
257 AGT
* ** * * * *
42933045 AGCGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGTAG---GTTGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCA
* * * ** * *
42933110 GTAATTCTACTTCCCT-AGGTAACAGTGGAATAGATTGAAGGTTTCAGATCTTATCTCCCTAAGC
63 GTAATTCTACTTCCCTGA-GCAGCAGTGGAATAGATTGAAGATTAAAGATCTTATCTCCCTAGGT
* * * * *
42933174 AGTAGTGGAGCAGATAAAAAATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAG
127 AGTAGTGGAGCAGAT-GAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAG
* *
42933239 CCAATAATTCTATCTCCCTG-GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCT-CT
191 CCAGTAATTCTATCTCCCTGAGG-AGCAGTGGAATAGATTGAAGATTATAGATC-T-CATCTCCT
* * *
42933302 CGGTTGC
253 AGGTAGT
* *
42933309 AGTGGAGCAGGTTGATGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTA
1 AGTGGAGTAGGTTGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTA
*
42933374 ATTCTACTTCCCTGAGCAGCAGTGGAATAGATTGAAGATTAAAGATTTTATCTCCCTAGGTAGTA
66 ATTCTACTTCCCTGAGCAGCAGTGGAATAGATTGAAGATTAAAGATCTTATCTCCCTAGGTAGTA
* *
42933439 GTGGAGTAGATCGAAGATGGAAGATTTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAG
131 GTGGAGCAGAT-GAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAG
* * *
42933504 TAATTCTATCTCCCTGAGGAACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCTTAGGCAG
195 TAATTCTATCTCCCTGAGGAGCAGTGGAATAGATTGAAGATTATAGATCTCATCTCC-TAGGTAG
42933569 T
259 T
42933570 AGTGGAGTA
1 AGTGGAGTA
42933579 AATCGAATAT
Statistics
Matches: 441, Mismatches: 76, Indels: 31
0.80 0.14 0.06
Matches are distributed among these distances:
258 9 0.02
259 5 0.01
260 2 0.00
261 317 0.72
262 5 0.01
263 1 0.00
264 97 0.22
265 2 0.00
266 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (259 bp):
AGTGGAGTAGGTTGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTA
ATTCTACTTCCCTGAGCAGCAGTGGAATAGATTGAAGATTAAAGATCTTATCTCCCTAGGTAGTA
GTGGAGCAGATGAAGATGGAAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGT
AATTCTATCTCCCTGAGGAGCAGTGGAATAGATTGAAGATTATAGATCTCATCTCCTAGGTAGT
Found at i:42933601 original size:393 final size:393
Alignment explanation
Indices: 42932801--42933607 Score: 1303
Period size: 393 Copynumber: 2.1 Consensus size: 393
42932791 GAGTAGGTTG
* * **
42932801 ATGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTAAAGCCGGTAATTCTATCTCCCTG
1 ATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTG
42932866 GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAGGTTGA
66 GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAGGTTGA
42932931 TGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGA
131 TGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGA
** *
42932996 GCAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTCCCTAATTAGTAGCGGAGTAGATCGAA
196 GCAGCAGTGGAATAGATTGAAGATTAAAGATCTTACCTCCCTAAGTAGTAGCGGAGTAGATCGAA
** ** *
42933061 GATGGCGGATTTTACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT
261 GATGGAAGATTTTACCTCCCTAAGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT
* * * *
42933126 AGGTAACAGTGGAATAGATTGAAGGTTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAA
326 AGGTAACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCCTAAGCAGTAGTGGAGCAAATAA
42933191 AAA
391 AAA
* * *
42933194 ATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTG
1 ATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTG
42933259 GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAGGTTGA
66 GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAGGTTGA
42933324 TGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGA
131 TGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGA
* * * *
42933389 GCAGCAGTGGAATAGATTGAAGATTAAAGATTTTATCTCCCTAGGTAGTAGTGGAGTAGATCGAA
196 GCAGCAGTGGAATAGATTGAAGATTAAAGATCTTACCTCCCTAAGTAGTAGCGGAGTAGATCGAA
*
42933454 GATGGAAGATTTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCC
261 GATGGAAGATTTTACCTCCCTAAGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCC
* * *
42933518 TGAGG-AACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCTTAGGCAGTAGTGGAGTAAAT
325 T-AGGTAACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCCTAAGCAGTAGTGGAGCAAAT
** *
42933582 CGAAT
389 AAAAA
*
42933587 ATGGCGGGTTTTACCTCCCTG
1 ATGGCGGATTTTACCTCCCTG
42933608 GGGAAAAATG
Statistics
Matches: 380, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
392 1 0.00
393 376 0.99
394 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (393 bp):
ATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAATAATTCTATCTCCCTG
GGCAGCAGTGGAATAGATTGAAGATTATAGACCTTACATCTCTCGGTTGCAGTGGAGCAGGTTGA
TGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCTGA
GCAGCAGTGGAATAGATTGAAGATTAAAGATCTTACCTCCCTAAGTAGTAGCGGAGTAGATCGAA
GATGGAAGATTTTACCTCCCTAAGATTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT
AGGTAACAGTGGAATAGATTGAAGATTACAGATCTCATCTCCCTAAGCAGTAGTGGAGCAAATAA
AAA
Found at i:42934803 original size:132 final size:131
Alignment explanation
Indices: 42934489--42935004 Score: 603
Period size: 132 Copynumber: 3.9 Consensus size: 131
42934479 GGAGTAGGTT
* * *
42934489 GATGGCGGATTTTACCTCTCTGAGGTTACAGTGGAGTACATTAAAGCCGGTAATTCTA-TCTCCC
1 GATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAGTAATTCTACT-TCCC
* * * ** ** *
42934553 TGGGCAGCAGTGGAATAGATTGAAGATTAT-AGACCTTACATCTCTCGGTTGCAGTGGAGCAG--
65 TAGGCAGCAGTGGAATAGATTGAAGATT-TCAGATCTTACATCCCTAAGCAGTAGTGGAGCAGAT
**
42934615 GTT
129 GAA
* *
42934618 GATGGAGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCT
1 GATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCT
* * ** * *
42934683 -GAGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTCCCTAATTAGTAGCGGAGTAGATC
66 AG-GCAGCAGTGGAATAGATTGAAGATTTCAGATCTTACATCCCTAAGCAGTAGTGGAGCAGAT-
42934747 GAA
129 GAA
* * *
42934750 GATGGCGGATTTTACCTCCCTGTGATTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCT
1 GATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCT
* * *
42934815 AGGTAACAGTGGAATAGATTGAAGGTTTCAGATCTTATC-TCCCTAAGCAGTAGTGGAGCAGATA
66 AGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTA-CATCCCTAAGCAGTAGTGGAGCAGAT-
*
42934879 AAA
129 GAA
* * * * * *
42934882 AATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGAACATTGAAGCCAGTACTTCTACTTCCCT
1 GATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCT
* * *
42934947 AGGAAGCAGTGGAATAGATTGAAGATTTCAGAACTTATATCCCTAAGCAGTAGTGGAG
66 AGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTACATCCCTAAGCAGTAGTGGAG
42935005 TAGGTTGAAT
Statistics
Matches: 338, Mismatches: 40, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
128 2 0.01
129 107 0.32
130 1 0.00
132 226 0.67
133 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (131 bp):
GATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTAAAGCCAGTAATTCTACTTCCCT
AGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTACATCCCTAAGCAGTAGTGGAGCAGATGA
A
Found at i:42935103 original size:50 final size:50
Alignment explanation
Indices: 42935043--42935187 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 50
42935033 GTAGTAGAAC
* * * *
42935043 AGATTCAAGCCACAACGGTGAATCTTGCTTCCTCGACATTACAGTTAAAA
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCTCGACATTGCAGTGAAAA
* * * *
42935093 AGATTAAAGCCACAACGGCGAATCTTACTT-CTCTGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCTC-GAC-ATTGCAGTGAAAA
* *
42935143 AGATTAAAGCCACAACGGCGAATCTTGTTTCCCCGACATTGCAGT
1 AGATTAAAGCCACAACGGCGAATCTTGCTTCCTCGACATTGCAGT
42935188 CAGATAGAAG
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
49 4 0.05
50 72 0.91
51 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTGCTTCCTCGACATTGCAGTGAAAA
Found at i:42935357 original size:43 final size:44
Alignment explanation
Indices: 42935286--42935455 Score: 175
Period size: 43 Copynumber: 3.9 Consensus size: 44
42935276 TAGATTGCAT
*
42935286 CAGGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAGTAAG
1 CAGGTCTTATCTCCCTGAAGATACAGTGGAGCAGACTGAGTAAG
* * * * *
42935330 CAGGTCTTATC-CCTTGAAGATGCAGTGGGGTAGACTGAAG-ATG
1 CAGGTCTTATCTCCCTGAAGATACAGTGGAGCAGACTG-AGTAAG
* * * * *
42935373 ACAGATTTTATCTCCGTGAGGTTACAGTGGAGCAGACTGAGTAAG
1 -CAGGTCTTATCTCCCTGAAGATACAGTGGAGCAGACTGAGTAAG
* * *
42935418 CAGGTCTTATC-CCCTGAAGATGCAGTGGGGTAGACTGA
1 CAGGTCTTATCTCCCTGAAGATACAGTGGAGCAGACTGA
42935456 AGATGGCAGA
Statistics
Matches: 99, Mismatches: 23, Indels: 9
0.76 0.18 0.07
Matches are distributed among these distances:
43 44 0.44
44 33 0.33
45 22 0.22
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (44 bp):
CAGGTCTTATCTCCCTGAAGATACAGTGGAGCAGACTGAGTAAG
Found at i:42935400 original size:88 final size:88
Alignment explanation
Indices: 42935292--42935492 Score: 339
Period size: 88 Copynumber: 2.3 Consensus size: 88
42935282 GCATCAGGTC
* *
42935292 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCTTGAAGATGCAGTG
1 TTATCTCCCTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTGAAGATGCAGTG
42935357 GGGTAGACTGAAGATGACAGATT
66 GGGTAGACTGAAGATGACAGATT
*
42935380 TTATCTCCGTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTGAAGATGCAGTG
1 TTATCTCCCTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTGAAGATGCAGTG
*
42935445 GGGTAGACTGAAGATGGCAGATT
66 GGGTAGACTGAAGATGACAGATT
* * *
42935468 TTACCTCCCCGAGATTACAGTGGAG
1 TTATCTCCCTGAGGTTACAGTGGAG
42935493 TAGATTGAAG
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 105 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (88 bp):
TTATCTCCCTGAGGTTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTGAAGATGCAGTG
GGGTAGACTGAAGATGACAGATT
Found at i:42935516 original size:88 final size:88
Alignment explanation
Indices: 42935306--42935516 Score: 253
Period size: 88 Copynumber: 2.4 Consensus size: 88
42935296 CTCCCTGAAG
* ** * *
42935306 TTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCTTGAAGATGCAGTGGGGTAGACTGAAGA
1 TTACAGTGGAGCAGACTGAGCAAGCAAATATTATCCCCTGAAGATGCAGTGGGGTAGACTGAAGA
* ** *
42935371 TGACAGATTTTATCTCCGTGAGG
66 TGACAGATTTTACCTCCCCGAGA
* ** *
42935394 TTACAGTGGAGCAGACTGAGTAAGCAGGTCTTATCCCCTGAAGATGCAGTGGGGTAGACTGAAGA
1 TTACAGTGGAGCAGACTGAGCAAGCAAATATTATCCCCTGAAGATGCAGTGGGGTAGACTGAAGA
*
42935459 TGGCAGATTTTACCTCCCCGAGA
66 TGACAGATTTTACCTCCCCGAGA
* * *
42935482 TTACAGTGGAGTAGATTGAAGCCA-CAAATATTATC
1 TTACAGTGGAGCAGACTG-AGCAAGCAAATATTATC
42935517 TCTCCGACGT
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 106 0.97
89 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (88 bp):
TTACAGTGGAGCAGACTGAGCAAGCAAATATTATCCCCTGAAGATGCAGTGGGGTAGACTGAAGA
TGACAGATTTTACCTCCCCGAGA
Found at i:42937460 original size:13 final size:14
Alignment explanation
Indices: 42937428--42937466 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
42937418 TTTTATAGGC
42937428 TGAAAAT-AAA-AA
1 TGAAAATAAAATAA
42937440 TGAAAATAAAATAA
1 TGAAAATAAAATAA
42937454 T-AAAATAAAATAA
1 TGAAAATAAAATAA
42937467 AAATACAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 7 0.28
13 15 0.60
14 3 0.12
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (14 bp):
TGAAAATAAAATAA
Found at i:42939828 original size:5 final size:6
Alignment explanation
Indices: 42939810--42939836 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
42939800 CAATAAAAAA
42939810 TTATTT TTATTT TTATTT TTATTT TTA
1 TTATTT TTATTT TTATTT TTATTT TTA
42939837 CGTATATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:42941060 original size:21 final size:21
Alignment explanation
Indices: 42941022--42941061 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
42941012 TTAAAAATCA
**
42941022 ATTTAATTTCTTTAAATTATT
1 ATTTAATTGATTTAAATTATT
*
42941043 ATTTAATTGATTTTAATTA
1 ATTTAATTGATTTAAATTA
42941062 AATAATTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (21 bp):
ATTTAATTGATTTAAATTATT
Found at i:42941216 original size:16 final size:17
Alignment explanation
Indices: 42941197--42941228 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
42941187 AAATGAGTTA
42941197 GAAAA-TAATTTAATTG
1 GAAAATTAATTTAATTG
42941213 GAAAATTAATTTAATT
1 GAAAATTAATTTAATT
42941229 AATATTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (17 bp):
GAAAATTAATTTAATTG
Found at i:42942969 original size:47 final size:47
Alignment explanation
Indices: 42942916--42943011 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
42942906 GCAAAATCTC
*
42942916 GTCTTTTACTTTCTGTTTGGCATGATTGGCTGGATCAGCTCTTACGA
1 GTCTTTTACTTTCTGTTTGGCATGATTGGCTAGATCAGCTCTTACGA
42942963 GTCTTTTACTTTCTGTTTGGCATGATTGGCTAGATCAGCTCTTACGA
1 GTCTTTTACTTTCTGTTTGGCATGATTGGCTAGATCAGCTCTTACGA
42943010 GT
1 GT
42943012 TTCTGTTCAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.43
Consensus pattern (47 bp):
GTCTTTTACTTTCTGTTTGGCATGATTGGCTAGATCAGCTCTTACGA
Found at i:42943023 original size:21 final size:21
Alignment explanation
Indices: 42942997--42943052 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
42942987 ATTGGCTAGA
*
42942997 TCAGCTCTTACGAG-TTTCTGT
1 TCAGCTCTTACGAGCTCT-TGT
42943018 TCAGCTCTTACGAGCTCTTGT
1 TCAGCTCTTACGAGCTCTTGT
42943039 TCAGCT-TT-CGAGCT
1 TCAGCTCTTACGAGCT
42943053 TCTATTGGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 6 0.18
20 2 0.06
21 23 0.70
22 2 0.06
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTCTTGT
Found at i:42948246 original size:43 final size:42
Alignment explanation
Indices: 42948185--42948341 Score: 170
Period size: 42 Copynumber: 3.6 Consensus size: 42
42948175 CTATGCCTAG
*
42948185 ATGGTAAGCAAATATTATACGAATAAAACAAATATTTCTTAAC
1 ATGGTAAACAAATATTATACGAATAAAA-AAATATTTCTTAAC
* * * *
42948228 ATGGTAAATAAATATTATACGAGTAAAAAAATATTCCTTAAG
1 ATGGTAAACAAATATTATACGAATAAAAAAATATTTCTTAAC
* * *
42948270 ATGGTAAACAAATATTATGCGAGTATAAAAAAATATTTTTTTTTAAG
1 ATGGTAAACAAATATTATACGA--ATAAAAAAATA---TTTCTTAAC
* *
42948317 ATGCTAGACAAATATTATACGAATA
1 ATGGTAAACAAATATTATACGAATA
42948342 TTATACCAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.33
43 25 0.26
44 10 0.10
45 3 0.03
47 26 0.27
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (42 bp):
ATGGTAAACAAATATTATACGAATAAAAAAATATTTCTTAAC
Found at i:42948276 original size:23 final size:22
Alignment explanation
Indices: 42948208--42948285 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
42948198 ATTATACGAA
*
42948208 TAAAACAAATATTTCTTAACATGG
1 TAAAA-AAATA-TTCTTAAGATGG
* * *
42948232 TAAATAAATATT-ATACGA--G
1 TAAAAAAATATTCTTAAGATGG
42948251 TAAAAAAATATTCCTTAAGATGG
1 TAAAAAAATATT-CTTAAGATGG
*
42948274 TAAACAAATATT
1 TAAAAAAATATT
42948286 ATGCGAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
19 12 0.29
21 7 0.17
22 2 0.05
23 17 0.40
24 4 0.10
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.32
Consensus pattern (22 bp):
TAAAAAAATATTCTTAAGATGG
Found at i:42948513 original size:43 final size:45
Alignment explanation
Indices: 42948377--42948528 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 45
42948367 CATCGACTAA
* *
42948377 TAAACAAATATTATAC-A-AATAGAAACAAAATATCTCTTCATATGC
1 TAAACAAATATTATACGATACTA-AAA-AAAATATATCTTCATATGC
* * * *
42948422 TAAACAAATATTTTACGAATACTAAAAAAAAAAAATCATCA-ACTGC
1 TAAACAAATATTATACG-ATACTAAAAAAAATATATCTTCATA-TGC
* * * *
42948468 TAAACAAAAATAATACGA-A-TAACAAAAATATTTCTTCATATGC
1 TAAACAAATATTATACGATACTAAAAAAAATATATCTTCATATGC
42948511 TAAACAAATATTATACGA
1 TAAACAAATATTATACGA
42948529 CTGTGGCAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
43 33 0.38
44 2 0.02
45 17 0.20
46 27 0.31
47 4 0.05
48 3 0.03
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (45 bp):
TAAACAAATATTATACGATACTAAAAAAAATATATCTTCATATGC
Found at i:42949144 original size:14 final size:13
Alignment explanation
Indices: 42949114--42949153 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 13
42949104 TGTTCATTTA
*
42949114 TTCATCAAG-TCT
1 TTCATCAAGTTTT
42949126 TTCATCAAGTGTTT
1 TTCATCAAGT-TTT
42949140 TTCATCAAGTTTT
1 TTCATCAAGTTTT
42949153 T
1 T
42949154 AAGCAAGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 9 0.36
13 4 0.16
14 12 0.48
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (13 bp):
TTCATCAAGTTTT
Found at i:42949151 original size:12 final size:12
Alignment explanation
Indices: 42949114--42949163 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
42949104 TGTTCATTTA
*
42949114 TTCATCAAGTCT
1 TTCATCAAGTTT
42949126 TTCATCAAGTGTTT
1 TTCATCAA--GTTT
42949140 TTCATCAAGTTT
1 TTCATCAAGTTT
* *
42949152 TTAAGCAAGTTT
1 TTCATCAAGTTT
42949164 CCAGCCCCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 22 0.67
14 11 0.33
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.46
Consensus pattern (12 bp):
TTCATCAAGTTT
Found at i:42955798 original size:5 final size:5
Alignment explanation
Indices: 42955788--42955833 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
42955778 AAAATTACAC
* *
42955788 ATTTT ATTTT ATTTT ATTTT -TCTT CTTTCT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT-T ATTTT ATTTT ATTTT A
42955834 CAGGCAGACC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
4 3 0.08
5 29 0.81
6 4 0.11
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:42960080 original size:31 final size:31
Alignment explanation
Indices: 42960045--42960433 Score: 324
Period size: 31 Copynumber: 12.8 Consensus size: 31
42960035 TAAGTTGCCG
*
42960045 AATTTGTATATGATTGTACATTGCTGAAATT
1 AATTTGTATATGATTATACATTGCTGAAATT
* * *
42960076 AATTTATATATGGTTATACATTGTTG-AATT
1 AATTTGTATATGATTATACATTGCTGAAATT
*
42960106 GAA-TTGTATATGGA-TATA-AGTTGCCG-AATT
1 -AATTTGTATAT-GATTATACA-TTGCTGAAATT
*
42960136 AATTTGTATATGATTATATATTGCTGAAATT
1 AATTTGTATATGATTATACATTGCTGAAATT
* * *
42960167 AATTTGTACATGGTTATACATTGTTGAAATT
1 AATTTGTATATGATTATACATTGCTGAAATT
*
42960198 GAA-TTGTATATGGA-TATA-AGTTGCCG-AATT
1 -AATTTGTATAT-GATTATACA-TTGCTGAAATT
*
42960228 AATTTGTATATGATTATATATTGCTGAAATT
1 AATTTGTATATGATTATACATTGCTGAAATT
* * *
42960259 AATTTGTACATGGTTATACATTGTTGAAATT
1 AATTTGTATATGATTATACATTGCTGAAATT
* * * *
42960290 GAGTTGTAT-GGA-TATA-AGTTGCCG-AATT
1 AATTTGTATATGATTATACA-TTGCTGAAATT
* ** * *
42960318 GATTCATATATGATTATACATTGCCGAATTT
1 AATTTGTATATGATTATACATTGCTGAAATT
*
42960349 AATTTGTATATGATTATACATTGC-CAAACTT
1 AATTTGTATATGATTATACATTGCTGAAA-TT
* * * *
42960380 GATTCGTATATGGTTATACATTGCCG-AATT
1 AATTTGTATATGATTATACATTGCTGAAATT
*
42960410 GATTTGTATATAGA-TATACATTGC
1 AATTTGTATAT-GATTATACATTGC
42960434 CGAATTTGGT
Statistics
Matches: 291, Mismatches: 45, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
28 11 0.04
29 19 0.07
30 97 0.33
31 161 0.55
32 3 0.01
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (31 bp):
AATTTGTATATGATTATACATTGCTGAAATT
Found at i:42960228 original size:61 final size:61
Alignment explanation
Indices: 42960000--42960433 Score: 310
Period size: 61 Copynumber: 7.2 Consensus size: 61
42959990 AGTGTTTATA
* *
42960000 GTTATACATTG-TCGAAATTGATTTGCATATGGATATA-AGTTGCCG----AATTTGTATATG
1 GTTATACATTGCT-GAAATTAATTTGTATATGGATATACA-TTGCCGAATTAATTTGTATATG
* * * * **
42960057 ATTGTACATTGCTGAAATTAATTTATATATGGTTATACATTGTTGAATTGAA-TTGTATATG
1 GTTATACATTGCTGAAATTAATTTGTATATGGATATACATTGCCGAATT-AATTTGTATATG
* * * * *
42960118 GATATA-AGTTGCCG-AATTAATTTGTATAT-GATTATATATTGCTGAAATTAATTTGTACATG
1 GTTATACA-TTGCTGAAATTAATTTGTATATGGA-TATACATTGCCG-AATTAATTTGTATATG
*
42960179 GTTATACATTGTTGAAATTGAA-TTGTATATGGATATA-AGTTGCCGAATTAATTTGTATATG
1 GTTATACATTGCTGAAATT-AATTTGTATATGGATATACA-TTGCCGAATTAATTTGTATATG
* * * * ** * *
42960240 ATTATATATTGCTGAAATTAATTTGTACATGGTTATACATTGTTGAAATTGAGTTG--TATG
1 GTTATACATTGCTGAAATTAATTTGTATATGGATATACATTGCCG-AATTAATTTGTATATG
* * * **
42960300 GATATA-AGTTGCCG-AATTGATTCATATAT-GATTATACATTGCCGAATTTAATTTGTATATG
1 GTTATACA-TTGCTGAAATTAATTTGTATATGGA-TATACATTGCCGAA-TTAATTTGTATATG
* * * * * * *
42960361 ATTATACATTGC-CAAACTTGATTCGTATATGGTTATACATTGCCGAATTGATTTGTATATA
1 GTTATACATTGCTGAAA-TTAATTTGTATATGGATATACATTGCCGAATTAATTTGTATATG
*
42960422 GATATACATTGC
1 GTTATACATTGC
42960434 CGAATTTGGT
Statistics
Matches: 297, Mismatches: 52, Indels: 52
0.74 0.13 0.13
Matches are distributed among these distances:
57 33 0.11
58 5 0.02
59 29 0.10
60 42 0.14
61 123 0.41
62 60 0.20
63 5 0.02
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (61 bp):
GTTATACATTGCTGAAATTAATTTGTATATGGATATACATTGCCGAATTAATTTGTATATG
Found at i:42960368 original size:182 final size:182
Alignment explanation
Indices: 42960001--42960433 Score: 578
Period size: 182 Copynumber: 2.4 Consensus size: 182
42959991 GTGTTTATAG
* * *
42960001 TTATACATTGTCGAAATTGATTTGCATATGGATATAAGTTGCCG----AATTTGTATATGATTGT
1 TTATACATTGTCGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTAT
*
42960062 ACATTGCTGAAATTAATTTATATATGGTTATACATTGTTGAATTGAATTGTATATGGATATAAGT
66 ACATTGCTGAAATTAATTTATACATGGTTATACATTGTTGAATTGAATTG-ATATGGATATAAGT
** * * *
42960127 TGCCGAATTAATTTGTATATGATTATATATTGCTGAAATTAATTTGTACATGG
130 TGCCGAATTAATTCATATATGATTATACATTGCCGAAATTAATTTGTACATGA
*
42960180 TTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTAT
1 TTATACATTGTCGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTAT
* * *
42960245 ATATTGCTGAAATTAATTTGTACATGGTTATACATTGTTGAAATTGAGTTG-TATGGATATAAGT
66 ACATTGCTGAAATTAATTTATACATGGTTATACATTGTTG-AATTGAATTGATATGGATATAAGT
* * *
42960309 TGCCGAATTGATTCATATATGATTATACATTGCCGAATTTAATTTGTATATGA
130 TGCCGAATTAATTCATATATGATTATACATTGCCGAAATTAATTTGTACATGA
* * *
42960362 TTATACATTG-CCAAACTTG-ATTCGTATATGGTTATACA-TTGCCGAATTGATTTGTATATAGA
1 TTATACATTGTCGAAA-TTGAATT-GTATATGGATATA-AGTTGCCGAATTAATTTGTATAT-GA
42960424 -TATACATTGC
62 TTATACATTGC
42960434 CGAATTTGGT
Statistics
Matches: 224, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
179 41 0.18
181 6 0.03
182 112 0.50
183 56 0.25
184 9 0.04
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.42
Consensus pattern (182 bp):
TTATACATTGTCGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTAT
ACATTGCTGAAATTAATTTATACATGGTTATACATTGTTGAATTGAATTGATATGGATATAAGTT
GCCGAATTAATTCATATATGATTATACATTGCCGAAATTAATTTGTACATGA
Found at i:42960440 original size:92 final size:92
Alignment explanation
Indices: 42960000--42960433 Score: 575
Period size: 92 Copynumber: 4.8 Consensus size: 92
42959990 AGTGTTTATA
* * * *
42960000 GTTATACATTGTCGAAATTGATTTGCATATGGATATAAGTTGCCG----AATTTGTATATGATTG
1 GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
*
42960061 TACATTGCTGAAATTAATTTATATATG
66 TACATTGCTGAAATTAATTTGTATATG
42960088 GTTATACATTGTTG-AATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
1 GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
* *
42960152 TATATTGCTGAAATTAATTTGTACATG
66 TACATTGCTGAAATTAATTTGTATATG
42960179 GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
1 GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
* *
42960244 TATATTGCTGAAATTAATTTGTACATG
66 TACATTGCTGAAATTAATTTGTATATG
* * **
42960271 GTTATACATTGTTGAAATTGAGTTG--TATGGATATAAGTTGCCGAATTGATTCATATATGATTA
1 GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
* *
42960334 TACATTGCCGAATTTAATTTGTATATG
66 TACATTGCTGAAATTAATTTGTATATG
* ** * *
42960361 ATTATACATTG-CCAAACTTG-ATTCGTATATGGTTATACA-TTGCCGAATTGATTTGTATATAG
1 GTTATACATTGTTGAAA-TTGAATT-GTATATGGATATA-AGTTGCCGAATTAATTTGTATAT-G
42960423 A-TATACATTGC
62 ATTATACATTGC
42960434 CGAATTTGGT
Statistics
Matches: 313, Mismatches: 22, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
87 28 0.09
88 13 0.04
89 5 0.02
90 72 0.23
91 53 0.17
92 139 0.44
93 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (92 bp):
GTTATACATTGTTGAAATTGAATTGTATATGGATATAAGTTGCCGAATTAATTTGTATATGATTA
TACATTGCTGAAATTAATTTGTATATG
Found at i:42960458 original size:31 final size:30
Alignment explanation
Indices: 42960001--42960458 Score: 257
Period size: 31 Copynumber: 15.2 Consensus size: 30
42959991 GTGTTTATAG
* * *
42960001 TTATACATTGTCGAAATTGATTTGCATATGGA
1 TTATACATTGCCG-AATTGATTCGTATAT-GA
42960033 -TATA-AGTTGCCGAA-T--TT-GTATATGA
1 TTATACA-TTGCCGAATTGATTCGTATATGA
* * * ** *
42960058 TTGTACATTGCTGAAATTAATTTATATATGG
1 TTATACATTGCCG-AATTGATTCGTATATGA
**
42960089 TTATACATTGTTGAATTGAATT-GTATATGGA
1 TTATACATTGCCGAATTG-ATTCGTATAT-GA
* *
42960120 -TATA-AGTTGCCGAATTAATTTGTATATGA
1 TTATACA-TTGCCGAATTGATTCGTATATGA
* * * * * *
42960149 TTATATATTGCTGAAATTAATTTGTACATGG
1 TTATACATTGCCG-AATTGATTCGTATATGA
**
42960180 TTATACATTGTTGAAATTGAATT-GTATATGGA
1 TTATACATTGCCG-AATTG-ATTCGTATAT-GA
* *
42960212 -TATA-AGTTGCCGAATTAATTTGTATATGA
1 TTATACA-TTGCCGAATTGATTCGTATATGA
* * * * * *
42960241 TTATATATTGCTGAAATTAATTTGTACATGG
1 TTATACATTGCCG-AATTGATTCGTATATGA
** *
42960272 TTATACATTGTTGAAATTGAGTT-GTAT-GGA
1 TTATACATTGCCG-AATTGA-TTCGTATATGA
*
42960302 -TATA-AGTTGCCGAATTGATTCATATATGA
1 TTATACA-TTGCCGAATTGATTCGTATATGA
* *
42960331 TTATACATTGCCGAATTTAATTTGTATATGA
1 TTATACATTGCCGAA-TTGATTCGTATATGA
* *
42960362 TTATACATTGCCAAACTTGATTCGTATATGG
1 TTATACATTGCCGAA-TTGATTCGTATATGA
*
42960393 TTATACATTGCCGAATTGATTTGTATATAGA
1 TTATACATTGCCGAATTGATTCGTATAT-GA
*
42960424 -TATACATTGCCGAATTTGGTTCGTATATGA
1 TTATACATTGCCGAA-TTGATTCGTATATGA
*
42960454 ATATA
1 TTATA
42960459 TATATATTGC
Statistics
Matches: 343, Mismatches: 51, Indels: 65
0.75 0.11 0.14
Matches are distributed among these distances:
25 2 0.01
26 13 0.04
27 7 0.02
28 11 0.03
29 22 0.06
30 102 0.30
31 180 0.52
32 6 0.02
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.42
Consensus pattern (30 bp):
TTATACATTGCCGAATTGATTCGTATATGA
Found at i:42964474 original size:26 final size:26
Alignment explanation
Indices: 42964445--42964495 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
42964435 AGTGATGATT
*
42964445 CAAGGAT-AGAATTTTAAAATATTATG
1 CAAGGATGA-AATTTTAAAAGATTATG
*
42964471 CAAGGATGAAATTTTTAAAGATTAT
1 CAAGGATGAAATTTTAAAAGATTAT
42964496 AAAGGGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.35
Consensus pattern (26 bp):
CAAGGATGAAATTTTAAAAGATTATG
Found at i:42967368 original size:47 final size:48
Alignment explanation
Indices: 42967317--42967414 Score: 162
Period size: 48 Copynumber: 2.1 Consensus size: 48
42967307 TATTTCTCTC
*
42967317 TTTATTTCTTCTCCCATTCGTCTC-TCTTTCTCTCATTTTTCATTTAT
1 TTTATTTCATCTCCCATTCGTCTCTTCTTTCTCTCATTTTTCATTTAT
* *
42967364 TTTATTTCATCTCCCATTCGTCTCTTTTTTCTGTCATTTTTCATTTAT
1 TTTATTTCATCTCCCATTCGTCTCTTCTTTCTCTCATTTTTCATTTAT
42967412 TTT
1 TTT
42967415 TCCCCCTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 23 0.49
48 24 0.51
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.61
Consensus pattern (48 bp):
TTTATTTCATCTCCCATTCGTCTCTTCTTTCTCTCATTTTTCATTTAT
Found at i:42969453 original size:3 final size:3
Alignment explanation
Indices: 42969445--42969484 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
42969435 ATTGTGGCTA
42969445 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
42969485 TACAAGTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:42976321 original size:299 final size:300
Alignment explanation
Indices: 42975772--42976370 Score: 1191
Period size: 299 Copynumber: 2.0 Consensus size: 300
42975762 TTAAGATTAT
42975772 ATTATCCTTTATCAAATAATTTAACCCATACTTAACTTTAAATAATATAATTTTATAATTTTAAT
1 ATTATCCTTTATCAAATAATTTAACCCATACTTAACTTTAAATAATATAATTTTATAATTTTAAT
42975837 TTATTAATATATATTCTTTTTAACACTTAATTCTAAAATTCAACCGTTATATAAATGGTTTAAAG
66 TTATTAATATATATTCTTTTTAACACTTAATTCTAAAATTCAACCGTTATATAAATGGTTTAAAG
42975902 TAATACTTCGTATGCAACGCATACGTCATTCAAGTAACCTCATCAATGTGACGCAGGCGTTTAAT
131 TAATACTTCGTATGCAACGCATACGTCATTCAAGTAACCTCATCAATGTGACGCAGGCGTTTAAT
42975967 GACATGTTAGCCTATTTGGTTAAATCCTTAATAAATTATTAAAAATCATATTATACGTATGTAAA
196 GACATGTTAGCCTATTTGGTTAAATCCTTAATAAATTATTAAAAATCATATTATACGTATGTAAA
42976032 AATTACGTATTTAAAATATAAGATGTATGTTTAAAAACAA
261 AATTACGTATTTAAAATATAAGATGTATGTTTAAAAACAA
42976072 ATTATCCTTT-TCAAATAATTTAACCCATACTTAACTTTAAATAATATAATTTTATAATTTTAAT
1 ATTATCCTTTATCAAATAATTTAACCCATACTTAACTTTAAATAATATAATTTTATAATTTTAAT
42976136 TTATTAATATATATTCTTTTTAACACTTAATTCTAAAATTCAACCGTTATATAAATGGTTTAAAG
66 TTATTAATATATATTCTTTTTAACACTTAATTCTAAAATTCAACCGTTATATAAATGGTTTAAAG
42976201 TAATACTTCGTATGCAACGCATACGTCATTCAAGTAACCTCATCAATGTGACGCAGGCGTTTAAT
131 TAATACTTCGTATGCAACGCATACGTCATTCAAGTAACCTCATCAATGTGACGCAGGCGTTTAAT
42976266 GACATGTTAGCCTATTTGGTTAAATCCTTAATAAATTATTAAAAATCATATTATACGTATGTAAA
196 GACATGTTAGCCTATTTGGTTAAATCCTTAATAAATTATTAAAAATCATATTATACGTATGTAAA
42976331 AATTACGTATTTAAAATATAAGATGTATGTTTAAAAACAA
261 AATTACGTATTTAAAATATAAGATGTATGTTTAAAAACAA
42976371 CATATAATAA
Statistics
Matches: 299, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
299 289 0.97
300 10 0.03
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (300 bp):
ATTATCCTTTATCAAATAATTTAACCCATACTTAACTTTAAATAATATAATTTTATAATTTTAAT
TTATTAATATATATTCTTTTTAACACTTAATTCTAAAATTCAACCGTTATATAAATGGTTTAAAG
TAATACTTCGTATGCAACGCATACGTCATTCAAGTAACCTCATCAATGTGACGCAGGCGTTTAAT
GACATGTTAGCCTATTTGGTTAAATCCTTAATAAATTATTAAAAATCATATTATACGTATGTAAA
AATTACGTATTTAAAATATAAGATGTATGTTTAAAAACAA
Found at i:42976600 original size:45 final size:44
Alignment explanation
Indices: 42976549--42976639 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 44
42976539 GGATTAGAAG
*
42976549 TGTAATGGAATAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAA
* *
42976594 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
42976638 TG
1 TG
42976640 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.43
45 23 0.55
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
Found at i:42982336 original size:22 final size:22
Alignment explanation
Indices: 42982298--42982341 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
42982288 CAAGTTAGTG
* *
42982298 GAAAAAGAATCAATATATTATT
1 GAAAAAGAATAAATATAATATT
42982320 GAAAAA-AATAAAGTATAATATT
1 GAAAAAGAATAAA-TATAATATT
42982342 AAATTTAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (22 bp):
GAAAAAGAATAAATATAATATT
Found at i:42982571 original size:18 final size:18
Alignment explanation
Indices: 42982543--42982585 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
42982533 TGTCTTCAAC
*
42982543 AAATAATTCAAAAATTATA
1 AAAT-ATTCAAAAAATATA
42982562 AAATATTCAAAAAATATA
1 AAATATTCAAAAAATATA
42982580 AAATAT
1 AAATAT
42982586 AAAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATATTCAAAAAATATA
Found at i:42982590 original size:26 final size:27
Alignment explanation
Indices: 42982553--42982603 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
42982543 AAATAATTCA
*
42982553 AAAATTATAAAATATTCAA-AAAATAT
1 AAAATTATAAAAAATTCAAGAAAATAT
42982579 AAAA-TATAAAAAAATTCAAGAAAAT
1 AAAATTAT-AAAAAATTCAAGAAAAT
42982604 TAGCAAGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 3 0.14
26 14 0.64
27 5 0.23
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAATTATAAAAAATTCAAGAAAATAT
Found at i:42982591 original size:18 final size:18
Alignment explanation
Indices: 42982552--42982592 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
42982542 CAAATAATTC
* **
42982552 AAAAATTATAAAATATTC
1 AAAAAATATAAAATATAA
42982570 AAAAAATATAAAATATAA
1 AAAAAATATAAAATATAA
42982588 AAAAA
1 AAAAA
42982593 TTCAAGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAAATATAAAATATAA
Found at i:42985173 original size:20 final size:20
Alignment explanation
Indices: 42985150--42985187 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
42985140 AATACATCAA
42985150 AATA-ATAAAATTTACAAACC
1 AATACATAAAA-TTACAAACC
*
42985170 AATACCTAAAATTACAAA
1 AATACATAAAATTACAAA
42985188 GTCAAAGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (20 bp):
AATACATAAAATTACAAACC
Found at i:42989032 original size:12 final size:13
Alignment explanation
Indices: 42989008--42989032 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
42988998 AGATGAGTTT
42989008 AAAATTAGAAAAA
1 AAAATTAGAAAAA
42989021 AAAATTAGAAAA
1 AAAATTAGAAAA
42989033 TCTAAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAATTAGAAAAA
Found at i:42990012 original size:126 final size:125
Alignment explanation
Indices: 42989614--42990181 Score: 703
Period size: 126 Copynumber: 4.5 Consensus size: 125
42989604 GATAAAATCA
* * * * * * * * *
42989614 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTTGCGCCTACGTGTACACGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * *
42989679 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGTGAAAATAGT-TAAAAAATGCTTC
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * *
42989738 AAGCAGGATGCTTTATGAGAAGAATTTATGAAATCCCGCCCTCGTGGACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
42989803 TGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTTTGAACAAATAGTTTAAAAAAACGCTTC
66 AGGTCCT-GAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTC
* * * * *
42989865 AAGTAGGATGCTTTATAAGAAGAATTTGTGAAGTCGTGCCCACGTGGACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
42989930 AGGTCCTGAAAAAATAATTTTGAATTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGT-
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCT-TC
* ** *
42989991 AAGCAGCATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTTGTGGACGCACTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * *
42990055 TAGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGTAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* *
42990115 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATTGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
42990180 AG
66 AG
42990182 TGCTACAGTA
Statistics
Matches: 381, Mismatches: 55, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
123 3 0.01
124 121 0.32
125 40 0.10
126 140 0.37
127 77 0.20
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:42993422 original size:22 final size:22
Alignment explanation
Indices: 42993379--42993949 Score: 707
Period size: 22 Copynumber: 26.1 Consensus size: 22
42993369 TCAAATTAGA
42993379 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
42993400 TTTAATTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993422 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
42993443 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993464 TTTAGGTTAAGGGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
*
42993486 TTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
42993508 TTTAATTTAAGGGCTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993530 TTTAAAGTTAAGGATTTAGGGTT
1 TTT-AAGTTAAGGGTTTAGGGTT
*
42993553 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993574 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993595 TTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
42993617 TTTAAGTTAATGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993639 TTTAAGTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993660 TTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993682 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993704 TTTAAGTTAAGGATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
42993726 TTTAAGTTAAGGGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
42993748 TTTAAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993768 TTTAGGTTAAGGGTTTATGGG-T
1 TTTAAGTTAAGGGTTTA-GGGTT
42993790 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
42993812 TTAAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
42993833 TTTAGGTTAAGGGGTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993855 TTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
42993877 TTTAGGTTAAAGATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
42993899 TTTAATTTAAGGGTTAGGGTTAGGGTT
1 TTTAAGTTAAGGG-T----TTAGGGTT
* *
42993926 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
42993948 TT
1 TT
42993950 GTCAATTAAA
Statistics
Matches: 482, Mismatches: 51, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
20 16 0.03
21 141 0.29
22 279 0.58
23 26 0.05
26 1 0.00
27 19 0.04
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:42993432 original size:43 final size:43
Alignment explanation
Indices: 42993379--42993919 Score: 700
Period size: 43 Copynumber: 12.5 Consensus size: 43
42993369 TCAAATTAGA
* *
42993379 TTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
42993422 TTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993464 TTTAGGTTAAGGGTTTATGGG-TTTTAATTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993508 TTTAATTTAAGGGCTTAGGGTTTTTAAAGTTAAGGATTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTT-AAGTTAAGGGTTTAGGGTT
* *
42993553 TTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGG-TTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993595 TTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAATGGTTTAGGATT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993639 TTTAAGTTAAGGGTTATGGTTTTTAAGTTAAGGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993682 TTTAAGTTAAGGGTTTAAGGTTTTTAAGTTAAGGATTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
42993726 TTTAAGTTAAGGGTTTATGGG-TTTTAAGTTAAGGG-TTAGGG-T
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGTTTAGGGTT
*
42993768 TTTAGGTTAAGGGTTTATGGG-TTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
42993812 TTAAAGTTAATGGTTAGGGTTTTTAGGTTAAGGGGTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
42993855 TTTAAGTTAAGGGTTTAGAGTTTTTAGGTTAAAGATTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
42993899 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
42993920 AGGGTTTTTA
Statistics
Matches: 441, Mismatches: 44, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
42 73 0.17
43 177 0.40
44 160 0.36
45 31 0.07
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:42993643 original size:65 final size:65
Alignment explanation
Indices: 42993379--42993919 Score: 720
Period size: 65 Copynumber: 8.3 Consensus size: 65
42993369 TCAAATTAGA
* * *
42993379 TTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGGTTTAGAGTTTTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
42993443 TTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGG-TTTTAATTTAAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTTTTTAAGTTAAGGGTTTAGGGT
42993507 T
65 T
* * *
42993508 TTTAATTTAAGGGCTTAGGGTTTTTAAAGTTAAGGATTTAGGGTTTTTAAGTTAAGGG-TTAAGG
1 TTTAAGTTAAGGG-TTAGGGTTTTT-AAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGG
42993572 TT
64 TT
* * * *
42993574 TTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAATGGTTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
42993639 TTTAAGTTAAGGGTTATGGTTTTTAAGTTAAGGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
42993704 TTTAAGTTAAGGATTTAGGGTTTTTAAGTTAAGGGTTTATGGG-TTTTAAGTTAAGGG-TTAGGG
1 TTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTTA-GGGTTTTTAAGTTAAGGGTTTAGGG
42993767 -T
64 TT
* * *
42993768 TTTAGGTTAAGGGTTTATGGG-TTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAATGG-TTAGGG
1 TTTAAGTTAAGGG-TTA-GGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGG
42993831 TT
64 TT
* * * * * *
42993833 TTTAGGTTAAGGGGTTAGGATTTTTAAGTTAAGGGTTTAGAGTTTTTAGGTTAAAGATTTAGGGT
1 TTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGT
42993898 T
65 T
*
42993899 TTTAATTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
42993920 AGGGTTTTTA
Statistics
Matches: 424, Mismatches: 38, Indels: 29
0.86 0.08 0.06
Matches are distributed among these distances:
63 3 0.01
64 130 0.31
65 174 0.41
66 89 0.21
67 28 0.07
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (65 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:42994562 original size:18 final size:18
Alignment explanation
Indices: 42994536--42994577 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
42994526 GACTCGAAAA
* *
42994536 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
42994554 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
42994572 AGGAAA
1 AGGAAA
42994578 TGCTCCTGGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.29, T:0.17
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:42995409 original size:20 final size:20
Alignment explanation
Indices: 42995372--42995409 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
42995362 TTTATTTTTA
*
42995372 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
42995392 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
42995410 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:42997420 original size:51 final size:51
Alignment explanation
Indices: 42997376--42997473 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
42997366 AATTATTTAA
*
42997376 AAATAGGGATTTAAGTGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
42997427 AAATATGGATTTGAGAGAAATTTTGAAGGAACTTGAGAGCAGATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
42997474 GAGGAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.26, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:42997449 original size:11 final size:11
Alignment explanation
Indices: 42997435--42997511 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
42997425 ATAAATATGG
42997435 ATTTGAGAGAA
1 ATTTGAGAGAA
*
42997446 ATTTTGA-AGGA
1 A-TTTGAGAGAA
* *
42997457 ACTTGAGAGCAG
1 ATTTGAGAG-AA
42997469 A-TTGAGAGGAA
1 ATTTGAGA-GAA
42997480 ATTT-AGAAGAA
1 ATTTGAG-AGAA
42997491 A-TTGAGAGGAA
1 ATTTGAGA-GAA
42997502 ATTTGAGAGA
1 ATTTGAGAGA
42997512 TGATTAGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
10 7 0.13
11 29 0.56
12 16 0.31
ACGTcount: A:0.43, C:0.03, G:0.30, T:0.25
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:42997478 original size:22 final size:21
Alignment explanation
Indices: 42997437--42997511 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
42997427 AAATATGGAT
*
42997437 TTGAGAGAAATTTTGA-AGGAAC
1 TTGAGAGAAA--TTGAGAGGAAA
*
42997459 TTGAGAGCAGATTGAGAGGAAA
1 TTGAGAG-AAATTGAGAGGAAA
*
42997481 TTTAGAAGAAATTGAGAGGAAA
1 TTGAG-AGAAATTGAGAGGAAA
42997503 TTTGAGAGA
1 -TTGAGAGA
42997512 TGATTAGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
21 4 0.09
22 32 0.73
23 8 0.18
ACGTcount: A:0.43, C:0.03, G:0.31, T:0.24
Consensus pattern (21 bp):
TTGAGAGAAATTGAGAGGAAA
Found at i:43000626 original size:5 final size:5
Alignment explanation
Indices: 43000616--43000640 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
43000606 TATTGTTAAT
43000616 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
43000641 TTCTAACGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:43002479 original size:22 final size:22
Alignment explanation
Indices: 43002454--43002496 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
43002444 TATTTAAATA
43002454 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
43002476 ATAATATTTAAATAGTAGCAA
1 ATAACAATAAAATAGTAGCAA
43002497 AATATTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:43002536 original size:22 final size:22
Alignment explanation
Indices: 43002503--43002561 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
43002493 GCAAAATATT
*
43002503 AAAAA-AAGAAAATACG-AAGAA
1 AAAAATAAAAAAATA-GTAAGAA
43002524 AAAAATAAAAAAATAGTAAGAA
1 AAAAATAAAAAAATAGTAAGAA
**
43002546 AGCAATAAAAAAATAG
1 AAAAATAAAAAAATAG
43002562 CAGTTTTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.18
22 27 0.82
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAATAAAAAAATAGTAAGAA
Found at i:43003351 original size:38 final size:39
Alignment explanation
Indices: 43003300--43003402 Score: 142
Period size: 38 Copynumber: 2.7 Consensus size: 39
43003290 ATGTTGGTTG
*
43003300 TGATTTTGATTTTGCTGTTAATGCTGTTAATGG-TGT-T
1 TGATTTTAATTTTGCTGTTAATGCTGTTAATGGTTGTGT
43003337 CTGATTTTAATTTTGCTGTTAATGCTGTTAATGGTTGTGT
1 -TGATTTTAATTTTGCTGTTAATGCTGTTAATGGTTGTGT
* *
43003377 T--TTTTATTTTTGCTGTTAATGGTGTT
1 TGATTTTAATTTTGCTGTTAATGCTGTT
43003403 CTGTTAATGT
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
37 23 0.38
38 32 0.53
39 4 0.07
40 1 0.02
ACGTcount: A:0.16, C:0.06, G:0.22, T:0.56
Consensus pattern (39 bp):
TGATTTTAATTTTGCTGTTAATGCTGTTAATGGTTGTGT
Found at i:43004212 original size:11 final size:11
Alignment explanation
Indices: 43004196--43004303 Score: 66
Period size: 11 Copynumber: 10.2 Consensus size: 11
43004186 CTATATATTT
43004196 ATAACAAATTA
1 ATAACAAATTA
43004207 ATAACAAATTA
1 ATAACAAATTA
*
43004218 ATTTA-AAATT-
1 A-TAACAAATTA
* * * *
43004228 CT-ATATATTT
1 ATAACAAATTA
43004238 ATAACAAATTA
1 ATAACAAATTA
43004249 ATAACAAATTA
1 ATAACAAATTA
*
43004260 ATTTA-AAATT-
1 A-TAACAAATTA
* * * *
43004270 CT-ATATATTT
1 ATAACAAATTA
43004280 ATAACAAATTA
1 ATAACAAATTA
43004291 ATAACAAATTA
1 ATAACAAATTA
43004302 AT
1 AT
43004304 TTAAAATTCT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
8 2 0.03
9 10 0.13
10 2 0.03
11 57 0.76
12 4 0.05
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
ATAACAAATTA
Found at i:43004344 original size:84 final size:84
Alignment explanation
Indices: 43004162--43004352 Score: 339
Period size: 84 Copynumber: 2.3 Consensus size: 84
43004152 AATTAGAAGT
43004162 TTAAAGAGTTATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAAATTAATTTAAAAT
1 TTAAAGAGTTATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAAATTAATTTAAAAT
43004227 TCTATATATTTATAACAAA
66 TCTATATATTTATAACAAA
***
43004246 TTAATA-ACAAATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAAATTAATTTAAAA
1 TTAA-AGAGTTATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAAATTAATTTAAAA
43004310 TTCTATATATTTATAACAAA
65 TTCTATATATTTATAACAAA
43004330 TTAAAGAGTTATTAATTTAAAAT
1 TTAAAGAGTTATTAATTTAAAAT
43004353 ATTTAATAAC
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
83 1 0.01
84 97 0.98
85 1 0.01
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (84 bp):
TTAAAGAGTTATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAAATTAATTTAAAAT
TCTATATATTTATAACAAA
Found at i:43004352 original size:42 final size:42
Alignment explanation
Indices: 43004172--43004333 Score: 324
Period size: 42 Copynumber: 3.9 Consensus size: 42
43004162 TTAAAGAGTT
43004172 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
1 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
43004214 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
1 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
43004256 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
1 ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
43004298 ATTAATTTAAAATTCTATATATTTATAACAAATTAA
1 ATTAATTTAAAATTCTATATATTTATAACAAATTAA
43004334 AGAGTTATTA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 120 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (42 bp):
ATTAATTTAAAATTCTATATATTTATAACAAATTAATAACAA
Found at i:43007336 original size:25 final size:25
Alignment explanation
Indices: 43007302--43007349 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
43007292 TTAAGATTTG
43007302 ATTGTTTGTAATTAAATTCAAATTA
1 ATTGTTTGTAATTAAATTCAAATTA
43007327 ATTGTTTGTAATTAAATTCAAAT
1 ATTGTTTGTAATTAAATTCAAAT
43007350 AAGTAATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
ATTGTTTGTAATTAAATTCAAATTA
Found at i:43007442 original size:16 final size:16
Alignment explanation
Indices: 43007421--43007454 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
43007411 ATATAAATTC
43007421 AATAACAATTAATTTT
1 AATAACAATTAATTTT
*
43007437 AATAACAATTAGTTTT
1 AATAACAATTAATTTT
43007453 AA
1 AA
43007455 CTTTTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (16 bp):
AATAACAATTAATTTT
Found at i:43009526 original size:4 final size:4
Alignment explanation
Indices: 43009517--43009565 Score: 89
Period size: 4 Copynumber: 12.2 Consensus size: 4
43009507 TTTACTTCAG
*
43009517 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
43009565 G
1 G
43009566 CTGTGATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:43012382 original size:40 final size:42
Alignment explanation
Indices: 43012330--43012466 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 42
43012320 AATTTATAAT
* *
43012330 ACTTTTCCCACAAA-CACTATAGAACATGACCTTTT-GCGGC
1 ACTTTTACCACAAACCACTAAAGAACATGACCTTTTAGCGGC
* *
43012370 ACTTTTATCACAAGCACCGCTAAAGAACATGA-CTTTTAGCGGC
1 ACTTTTACCACAA--ACCACTAAAGAACATGACCTTTTAGCGGC
* *
43012413 ACTTTTACCACAAACGCCACTAGAGAACATGACC-TTTAGTGGC
1 ACTTTTACCACAAA--CCACTAAAGAACATGACCTTTTAGCGGC
*
43012456 GCTTTTTACCA
1 AC-TTTTACCA
43012467 AAAAAGCCGC
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
40 11 0.14
41 1 0.01
42 6 0.08
43 53 0.66
44 9 0.11
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (42 bp):
ACTTTTACCACAAACCACTAAAGAACATGACCTTTTAGCGGC
Found at i:43012397 original size:43 final size:44
Alignment explanation
Indices: 43012344--43012466 Score: 144
Period size: 43 Copynumber: 2.8 Consensus size: 44
43012334 TTCCCACAAA
* * *
43012344 CACTATAGAACATGACCTTTT-GCGGCACTTTTATCACAAGCAC
1 CACTAAAGAACATGACCTTTTAGCGGCACTTTTACCACAAACAC
* *
43012387 CGCTAAAGAACATGA-CTTTTAGCGGCACTTTTACCACAAACGC
1 CACTAAAGAACATGACCTTTTAGCGGCACTTTTACCACAAACAC
* * *
43012430 CACTAGAGAACATGACC-TTTAGTGGCGCTTTTTACCA
1 CACTAAAGAACATGACCTTTTAGCGGCAC-TTTTACCA
43012467 AAAAAGCCGC
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 5 0.07
43 54 0.79
44 9 0.13
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (44 bp):
CACTAAAGAACATGACCTTTTAGCGGCACTTTTACCACAAACAC
Found at i:43012902 original size:66 final size:66
Alignment explanation
Indices: 43012793--43012930 Score: 163
Period size: 66 Copynumber: 2.1 Consensus size: 66
43012783 TCATATTCTG
* * **
43012793 AAGTTGTAGCTAGAGTTCGTCATATTTTCTGTTTGCTTATGCTTCCCTCGTTGCTGCCTCCGCTT
1 AAGTTGTAACTAGAGTTCGTCATATTTTCTGTTAGCTTATGCTTCCCTCAATGCTGCCTCCGCTT
43012858 T
66 T
* * * **
43012859 AAGTTGTAACTGGAGTTCTTCATATTTTCT-TTAAGCCTT-TGCTTCTCTCAATGCTTTCTCCGC
1 AAGTTGTAACTAGAGTTCGTCATATTTTCTGTT-AG-CTTATGCTTCCCTCAATGCTGCCTCCGC
43012922 TTT
64 TTT
43012925 AAGTTG
1 AAGTTG
43012931 AGCAATTTGC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
65 2 0.03
66 56 0.92
67 3 0.05
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.45
Consensus pattern (66 bp):
AAGTTGTAACTAGAGTTCGTCATATTTTCTGTTAGCTTATGCTTCCCTCAATGCTGCCTCCGCTT
T
Found at i:43017133 original size:29 final size:29
Alignment explanation
Indices: 43017091--43017147 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
43017081 AATAAGTGGC
43017091 TGTATATAAATGTCAATATCATTCTCGGT
1 TGTATATAAATGTCAATATCATTCTCGGT
43017120 TGTATATAAATGTCAATATCATTCTCGG
1 TGTATATAAATGTCAATATCATTCTCGG
43017148 GACCTTTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (29 bp):
TGTATATAAATGTCAATATCATTCTCGGT
Found at i:43021320 original size:9 final size:9
Alignment explanation
Indices: 43021306--43021331 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
43021296 TGATATATAT
43021306 TTATGTAAG
1 TTATGTAAG
43021315 TTATGTAAG
1 TTATGTAAG
43021324 TTATGTAA
1 TTATGTAA
43021332 TTCATTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:43021886 original size:25 final size:25
Alignment explanation
Indices: 43021858--43021905 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
43021848 GGACAAGATT
43021858 TTGTTAAATGAAATAATAAAAATAA
1 TTGTTAAATGAAATAATAAAAATAA
*
43021883 TTGTTAACTGAAATAATAAAAAT
1 TTGTTAAATGAAATAATAAAAAT
43021906 TGAGCCAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.33
Consensus pattern (25 bp):
TTGTTAAATGAAATAATAAAAATAA
Found at i:43025099 original size:7 final size:7
Alignment explanation
Indices: 43025087--43025183 Score: 72
Period size: 7 Copynumber: 13.7 Consensus size: 7
43025077 ACTAATTAAT
43025087 CTAAACC
1 CTAAACC
43025094 CTAAACTC
1 CTAAAC-C
*
43025102 CTAACCC
1 CTAAACC
43025109 CTAAACC
1 CTAAACC
* *
43025116 TTGAACC
1 CTAAACC
43025123 CTAAACCC
1 CTAAA-CC
*
43025131 CTAACCC
1 CTAAACC
43025138 CTAAACC
1 CTAAACC
*
43025145 TTAAACC
1 CTAAACC
43025152 C--AACC
1 CTAAACC
*
43025157 CTTAAGCC
1 C-TAAACC
*
43025165 GTAAACC
1 CTAAACC
*
43025172 ATAAACC
1 CTAAACC
*
43025179 ATAAA
1 CTAAA
43025184 TCATAAAGAA
Statistics
Matches: 71, Mismatches: 14, Indels: 10
0.75 0.15 0.11
Matches are distributed among these distances:
5 5 0.07
7 51 0.72
8 15 0.21
ACGTcount: A:0.40, C:0.39, G:0.03, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:43025110 original size:15 final size:14
Alignment explanation
Indices: 43025087--43025144 Score: 64
Period size: 15 Copynumber: 4.0 Consensus size: 14
43025077 ACTAATTAAT
*
43025087 CTAAACCCTAAACTC
1 CTAACCCCTAAAC-C
43025102 CTAACCCCTAAACC
1 CTAACCCCTAAACC
*
43025116 TTGAA-CCCTAAACCC
1 CT-AACCCCTAAA-CC
43025131 CTAACCCCTAAACC
1 CTAACCCCTAAACC
43025145 TTAAACCCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 13 0.35
15 24 0.65
ACGTcount: A:0.36, C:0.45, G:0.02, T:0.17
Consensus pattern (14 bp):
CTAACCCCTAAACC
Done.