Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 137 of 210
Found at i:45418854 original size:26 final size:26
Alignment explanation
Indices: 45418823--45418887 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
45418813 ATAAGAGCCA
* * *
45418823 TAATCAGGAAGTTTACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACCTT
* *
45418849 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
45418875 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
45418888 CGGATAGCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 5 0.15
26 29 0.85
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:45427332 original size:13 final size:12
Alignment explanation
Indices: 45427311--45427366 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
45427301 ATAATTTTGG
*
45427311 TTTCTATTTTCAT
1 TTTCCATTTT-AT
*
45427324 TTTCAATTTTAT
1 TTTCCATTTTAT
45427336 CTTTCCATTTTATT
1 -TTTCCATTTTA-T
*
45427350 TTTCCATTTCAT
1 TTTCCATTTTAT
45427362 TTTCC
1 TTTCC
45427367 CCTATTAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 8 0.21
13 29 0.76
14 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTCCATTTTAT
Found at i:45427678 original size:20 final size:20
Alignment explanation
Indices: 45427653--45427690 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
45427643 TAATTCACGG
45427653 TTTAATTTATAAACCAATTC
1 TTTAATTTATAAACCAATTC
45427673 TTTAATTTATAAACCAAT
1 TTTAATTTATAAACCAAT
45427691 CCAAATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTAATTTATAAACCAATTC
Found at i:45431737 original size:48 final size:48
Alignment explanation
Indices: 45431666--45431767 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 48
45431656 CAGTGTCGCG
* *
45431666 ACATCAAAGGTAGTTTTGTACTTTCTCCATTATGTTCTCTATGTTGCA
1 ACATCGAAGGTAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
* *
45431714 ACATCGAAGGTAGTTTCGTACTTTCTTCATTATGTTCTCTATGTTGCG
1 ACATCGAAGGTAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
45431762 ACATCG
1 ACATCG
45431768 GACTTCCCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.42
Consensus pattern (48 bp):
ACATCGAAGGTAGTTTCGTACTTTCTCCATTATGTTCTCTATGTTGCA
Found at i:45438366 original size:10 final size:10
Alignment explanation
Indices: 45438351--45438399 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
45438341 GAATCTGTCG
45438351 AAAATTAATC
1 AAAATTAATC
45438361 AAAATTAATC
1 AAAATTAATC
*
45438371 AAAATTTAATTAT
1 AAAA-TTAA-T-C
*
45438384 AAAATTAATT
1 AAAATTAATC
45438394 AAAATT
1 AAAATT
45438400 TGACATTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
10 21 0.60
11 5 0.14
12 5 0.14
13 4 0.11
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATC
Found at i:45438393 original size:12 final size:11
Alignment explanation
Indices: 45438351--45438397 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
45438341 GAATCTGTCG
*
45438351 AAAATTAA-TC
1 AAAATTAATTA
*
45438361 AAAATTAATCA
1 AAAATTAATTA
*
45438372 AAATTTAATTA
1 AAAATTAATTA
45438383 TAAAATTAATTA
1 -AAAATTAATTA
45438395 AAA
1 AAA
45438398 TTTGACATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 8 0.27
11 12 0.40
12 10 0.33
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:45440595 original size:8 final size:8
Alignment explanation
Indices: 45440572--45440605 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
45440562 ATTTGACCTG
45440572 TAAAGAAAA
1 TAAAG-AAA
45440581 TTAAAGAAA
1 -TAAAGAAA
45440590 TAAAGAAA
1 TAAAGAAA
45440598 TAAAGAAA
1 TAAAGAAA
45440606 AAGAAAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 3 0.12
10 5 0.21
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (8 bp):
TAAAGAAA
Found at i:45440640 original size:19 final size:18
Alignment explanation
Indices: 45440591--45440642 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
45440581 TTAAAGAAAT
*
45440591 AAAGAAATAAAGAAAAAGA
1 AAAG-AATAAAGAAAAACA
* *
45440610 AAACACTAAAAGAAGAAACA
1 AAAGAAT-AAAGAA-AAACA
45440630 AAAGAATAAAGAA
1 AAAGAATAAAGAA
45440643 TAAATAGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.75, C:0.06, G:0.13, T:0.06
Consensus pattern (18 bp):
AAAGAATAAAGAAAAACA
Found at i:45440981 original size:13 final size:13
Alignment explanation
Indices: 45440963--45440988 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45440953 TTATATAGGC
45440963 TAGTTAATTACAT
1 TAGTTAATTACAT
45440976 TAGTTAATTACAT
1 TAGTTAATTACAT
45440989 AAAAAAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TAGTTAATTACAT
Found at i:45443983 original size:92 final size:92
Alignment explanation
Indices: 45443819--45444010 Score: 260
Period size: 92 Copynumber: 2.1 Consensus size: 92
45443809 TGATAATACT
* * * * ** *
45443819 AGGTATCATAATAAAACACATATTGATAGTTCAGGTACCGTATTGGACATTTTCAAAGTATAGGT
1 AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
*
45443884 ATCACATTGGATATTTTATGAAAGCAC
66 ATCACATTGAATATTTTATGAAAGCAC
* *
45443911 AGGTACCATAAGAAAACACATACTGATGGTTCAGATACCACATTGGACATTTTCAAAGTACATGT
1 AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
*
45443976 A-CTACATTGAATATTTTATGAAAGTAC
66 ATC-ACATTGAATATTTTATGAAAGCAC
*
45444003 AAGTACCA
1 AGGTACCA
45444011 AATGCGACAT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 1 0.01
92 86 0.99
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (92 bp):
AGGTACCATAAGAAAACACATACTGATAGTTCAGATACCACATTGGACATTTTCAAAGTACAGGT
ATCACATTGAATATTTTATGAAAGCAC
Found at i:45445850 original size:14 final size:13
Alignment explanation
Indices: 45445831--45445861 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
45445821 TTCTCAAAAT
*
45445831 CATTTTTTCAAAG
1 CATTTTTTTAAAG
45445844 CATTTTTTTAAAG
1 CATTTTTTTAAAG
45445857 CATTT
1 CATTT
45445862 CTCAAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (13 bp):
CATTTTTTTAAAG
Found at i:45447618 original size:51 final size:51
Alignment explanation
Indices: 45447542--45447717 Score: 230
Period size: 51 Copynumber: 3.5 Consensus size: 51
45447532 ATTGAACATT
*
45447542 TCTCACATGGTCTTACACCTCATATCATATATGTAAATGCCATGAAGCCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTAAATGCCATGAAGCCTC
**
45447593 TCTCACATGGTCTTATACCTCATATCATATATGTGGATGCCATGCAA-CCTC
1 TCTCACATGGTCTTATACCTCATATCATATATGTAAATGCCATG-AAGCCTC
* * ** **
45447644 TCTCACATGGTCTTATACCTCATA-CGATATCTGTATATGTTATGGTGCCTC
1 TCTCACATGGTCTTATACCTCATATC-ATATATGTAAATGCCATGAAGCCTC
*
45447695 TCTTACATGGTCTTATACCTCAT
1 TCTCACATGGTCTTATACCTCAT
45447718 TTTCACATAA
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
50 1 0.01
51 108 0.97
52 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (51 bp):
TCTCACATGGTCTTATACCTCATATCATATATGTAAATGCCATGAAGCCTC
Found at i:45450820 original size:20 final size:18
Alignment explanation
Indices: 45450746--45450847 Score: 77
Period size: 20 Copynumber: 5.5 Consensus size: 18
45450736 AAAAAAATAG
*
45450746 TTTAATAGTTTAATATTAAA
1 TTTAATA-TTAAATATT-AA
*
45450766 TTTAAT-TT-AATACTTAT
1 TTTAATATTAAATA-TTAA
* *
45450783 TTTAATAGTATTATATTAA
1 TTTAATATTA-AATATTAA
45450802 TTTAATATTAAAGTAATT-A
1 TTTAATATTAAA-T-ATTAA
45450821 TCTTAATATTAAAT-TTAA
1 T-TTAATATTAAATATTAA
45450839 TTTAATATT
1 TTTAATATT
45450848 TATCTTGTAG
Statistics
Matches: 68, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
17 21 0.31
18 8 0.12
19 16 0.24
20 23 0.34
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTAATATTAAATATTAA
Found at i:45450820 original size:25 final size:26
Alignment explanation
Indices: 45450784--45450832 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
45450774 AATACTTATT
45450784 TTAATAGTATTATATTAAT-TTAATA
1 TTAATAGTATTATATTAATATTAATA
*
45450809 TTAA-AGTAATTATCTTAATATTAA
1 TTAATAGT-ATTATATTAATATTAA
45450833 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (26 bp):
TTAATAGTATTATATTAATATTAATA
Found at i:45457316 original size:19 final size:19
Alignment explanation
Indices: 45457292--45457345 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
45457282 AATCTTCAAG
45457292 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
45457311 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45457330 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
45457346 ATATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45457336 original size:38 final size:40
Alignment explanation
Indices: 45457292--45457368 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
45457282 AATCTTCAAG
45457292 GATATGCAATCTTAG-ATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
*
45457330 GATATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTAG-A-ATATGATTATGTAATCTTAGA
45457369 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 15 0.44
41 6 0.18
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (40 bp):
GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
Found at i:45464379 original size:44 final size:44
Alignment explanation
Indices: 45464331--45464737 Score: 205
Period size: 44 Copynumber: 9.3 Consensus size: 44
45464321 AGACACCAAC
*
45464331 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATTGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* **** * ** * * *
45464375 CTTGCCTTCCTGCACCGACAGC-GAGCAGATCGAAGACA-CTA-AC
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGC-AGAT
* *
45464418 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATTGTAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* **** * * ** * * * *
45464462 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCA-AC
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
45464506 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* *** * * * ** * * * *
45464550 CTTGCCTTCCTGCACTGACAGCGAAGTAGATCGAAGACACCA-AC
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
* *
45464594 CTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
* * **** * * * ** * * * *
45464638 CTTTCCTTCCTGCACCGACAGCGAAGAAGATCGAAGACACCAGCT
1 CTTGCCTCCCTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
45464683 -TTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
*
45464726 CTTGCCTTCCTG
1 CTTGCCTCCCTG
45464738 CACCGACAGT
Statistics
Matches: 238, Mismatches: 114, Indels: 22
0.64 0.30 0.06
Matches are distributed among these distances:
42 4 0.02
43 74 0.31
44 109 0.46
45 51 0.21
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
Found at i:45464800 original size:88 final size:88
Alignment explanation
Indices: 45464282--45464770 Score: 809
Period size: 88 Copynumber: 5.6 Consensus size: 88
45464272 GTGAAGATAA
* * *
45464282 CAGATATTGCCTTCCTACACCGACAGTGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
*
45464347 GCAGCGGAGCAGGTTAAAAATTG
66 GCAGCGGAGCAGGTTAAAAATAG
*
45464370 CAGATCTTGCCTTCCTGCACCGACAGCG-AGCAGATCGAAGACACTAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
*
45464434 GCAGCGGAGCAGGTTAAAAATTG
66 GCAGCGGAGCAGGTTAAAAATAG
*
45464457 TAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
45464522 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
45464545 CAGATCTTGCCTTCCTGCACTGACAGCGAAGTAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
*
45464610 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * * *
45464633 TAGATCTTTCCTTCCTGCACCGACAGCGAAGAAGATCGAAGACACCAGCTTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
45464698 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
45464721 CAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGATGACCCCAACC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACC
45464771 CTATCTCCCT
Statistics
Matches: 374, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
87 85 0.23
88 289 0.77
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGTTAAAAATAG
Found at i:45464820 original size:44 final size:44
Alignment explanation
Indices: 45464772--45464891 Score: 172
Period size: 44 Copynumber: 2.7 Consensus size: 44
45464762 ACCCCAACCC
*
45464772 TATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AAGTCA
1 TATCTCCCTGGACAACAGTGGAATAGGTTGAAGATTGTGAA-TCA
* *
45464816 TATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAATCC
1 TATCTCCCTGGACAACAGTGGAATAGGTTGAAGATTGTGAATCA
*
45464860 TATCTCCCT-GAGCAACAGTGGAGTAGGTTGAA
1 TATCTCCCTGGA-CAACAGTGGAATAGGTTGAA
45464892 AATAGCAAAT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
43 1 0.01
44 66 0.96
45 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGGACAACAGTGGAATAGGTTGAAGATTGTGAATCA
Found at i:45465072 original size:50 final size:50
Alignment explanation
Indices: 45464973--45465084 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 50
45464963 GCAATGGAAA
* * * ** *
45464973 AGATTGAAACCACAACGGCGAATATTTTTTCCCTAGTGTTGTAGCGGAGT
1 AGATTGAAGCCACAACGGCGAATATTATCTCCCTAAAGTTCTAGCGGAGT
* * * *
45465023 AGATTGAAGCCACGACGGTGAATCTTATCTCCCTAAAGTTCTAGTGGAGT
1 AGATTGAAGCCACAACGGCGAATATTATCTCCCTAAAGTTCTAGCGGAGT
*
45465073 AGATTAAAGCCA
1 AGATTGAAGCCA
45465085 ATAATCCTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGAATATTATCTCCCTAAAGTTCTAGCGGAGT
Found at i:45465433 original size:128 final size:128
Alignment explanation
Indices: 45465256--45465548 Score: 415
Period size: 128 Copynumber: 2.3 Consensus size: 128
45465246 GACTGAAGAT
* * * *
45465256 AGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAA
1 AGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAA
** **
45465321 GTTGCACTGGAGTGGATTAAAATCACAGATATTATCTCTCTGAAGTTGCAGAGAGCAGATCGC
66 GTCACACTGGAACGGATTAAAATCACAGATATTATCTCTCTGAAGTTGCAGAGAGCAGATCGC
* * * *
45465384 AGCGGGTCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAA
1 AGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAA
* * *
45465449 GTCACAGTGGAACGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGAGAGCAGATCGC
66 GTCACACTGGAACGGATTAAAATCACAGATATTATCTCTCTGAAGTTGCAGAGAGCAGATCGC
* * * *
45465512 ATCTAGTATTATCTCTCTGAAGTTGCAGTGGAGCAGA
1 AGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
45465549 CTAAGTAAGC
Statistics
Matches: 143, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
128 143 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (128 bp):
AGCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTAAA
GTCACACTGGAACGGATTAAAATCACAGATATTATCTCTCTGAAGTTGCAGAGAGCAGATCGC
Found at i:45465673 original size:133 final size:128
Alignment explanation
Indices: 45465521--45465891 Score: 401
Period size: 128 Copynumber: 2.9 Consensus size: 128
45465511 CATCTAGTAT
* * * *
45465521 TATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-AG-CCTTATC-CTCCTGAAGTTGTA
1 TATCTCCCTGAAGTCGCAGTTGAGCAGACTAA--AAGCACAGACCTTATCTCT-CTGAAGTTGCA
* * * *
45465583 GTGAGGCAGACTAAAG-AT-GGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCC
63 GAGA-GCAGA-T--AGCATCGG-G--TCTTATCTCCCCAAAATTACAGTGGAGCAAATTAAAGCC
45465646 AATAATTC
121 AATAATTC
* * *
45465654 TATCTCCCTGAAGTCGCAGTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTGAAGTCGCAGTTGAGCAGACTAAAAGCACAGACCTTATCTCTCTGAAGTTGCAGAG
* * *
45465719 AGCAGATCGCATCGGGTCTTATCTCCCTAAAATTGCAGTGGAGCAAATTAAAGCCAATAATTC
66 AGCAGATAGCATCGGGTCTTATCTCCCCAAAATTACAGTGGAGCAAATTAAAGCCAATAATTC
* * *
45465782 TATCTCCCTGAAGTCGCAGTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTGAAGTCGCAGTTGAGCAGACTAAAAGCACAGACCTTATCTCTCTGAAGTTGCAGAG
* ** ** * *
45465847 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
66 AGCAGATAGCATCGGGTCTTATCTCCCCAAAATTACAGTGGAGCA
45465892 GACTAAGTAA
Statistics
Matches: 215, Mismatches: 18, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
128 148 0.69
129 1 0.00
130 3 0.01
131 7 0.03
132 7 0.03
133 47 0.22
134 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (128 bp):
TATCTCCCTGAAGTCGCAGTTGAGCAGACTAAAAGCACAGACCTTATCTCTCTGAAGTTGCAGAG
AGCAGATAGCATCGGGTCTTATCTCCCCAAAATTACAGTGGAGCAAATTAAAGCCAATAATTC
Found at i:45465686 original size:345 final size:345
Alignment explanation
Indices: 45465045--45466451 Score: 2375
Period size: 345 Copynumber: 4.1 Consensus size: 345
45465035 CGACGGTGAA
* * *
45465045 TCTTATCTCCCTAAAGTT-CTAGTGGAGTAGATTAAAGCCAATAATCCTATCTCCCTAAAGTCAC
1 TCTTATCTCCCTAAAATTGC-AGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCAC
* *
45465109 AGTGGAGCGAATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAAAGAGCAGATCGCATCTAGT
65 AGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGT
* *
45465174 CTTATCTCCCTAAAGTTGCAGTGGAGAAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAG
130 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAG
*
45465239 TGAGGCAGACTGAAGATAGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAAT
195 TGAGGCAGACTGAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAAT
* *
45465304 AATCCTATCTCCCTGAAGTTGCACTGGAGTGGATTAAAATCACAGATATTATCTCTCTGAAGTTG
260 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
*
45465369 CAGAGAGCAGATCGCAGCGGG
325 CAGAGAGCAGATCGCATCGGG
45465390 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
1 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
* * *
45465455 GTGGAACGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGAGAGCAGATCGCATCTAGTA
66 GTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
*
45465520 TTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
131 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
*
45465585 GAGGCAGACTAAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATA
196 GAGGCAGACTGAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATA
* * * **
45465650 ATTCTATCTCCCTGAAGTCGCAGTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
261 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
45465715 AGAGAGCAGATCGCATCGGG
326 AGAGAGCAGATCGCATCGGG
* * *
45465735 TCTTATCTCCCTAAAATTGCAGTGGAGCAAATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
1 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
* *
45465800 GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
66 GTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
45465865 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
131 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
* * *
45465930 GAGGCAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGCCACTA
196 GAGGCAGACTGAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATA
* * *
45465995 ATCATATCTCCCTGAAGTTGCAGTGGAGTGAATTAAAATCACAGATCTTATCTCTCTGAAGTTAC
261 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
* *
45466060 AGAGAGCAAATCGCATCGAG
326 AGAGAGCAGATCGCATCGGG
45466080 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
1 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
* * *
45466145 GTGGAGCGGATTAAAATCACAGATCTTATCTTTCTGAAGTTGCAGAGAGTAGATCACATCTAGTC
66 GTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
* *
45466210 TTATCTCCCTGAAGTTGCATTGGAGCAGACTAAGTAAGCAAGCTTTATCCTCCTGAAGTTGTAGT
131 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
* **
45466275 GAGGCAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGCCAATA
196 GAGGCAGACTGAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATA
* *
45466340 ATCCTATCTCCCTGAAGTTGTAGTGAAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
261 ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
*
45466405 AGAGAGCAGATCGCATCAGG
326 AGAGAGCAGATCGCATCGGG
* *
45466425 TCTTATCTCCCTGAAGTTGCAGTGGAG
1 TCTTATCTCCCTAAAATTGCAGTGGAG
45466452 TAGACGCAAG
Statistics
Matches: 993, Mismatches: 68, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
345 992 1.00
346 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (345 bp):
TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTAAAGTCACA
GTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATCCTCCTGAAGTTGTAGT
GAGGCAGACTGAAGATGGCGAATCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATA
ATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGCATCGGG
Found at i:45465783 original size:128 final size:128
Alignment explanation
Indices: 45465607--45465891 Score: 507
Period size: 128 Copynumber: 2.2 Consensus size: 128
45465597 AGATGGCGAA
* * *
45465607 TCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
*
45465672 GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCGGG
66 GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCGAG
* *
45465735 TCTTATCTCCCTAAAATTGCAGTGGAGCAAATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
*
45465800 GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAG
66 GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCGAG
45465863 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
45465892 GACTAAGTAA
Statistics
Matches: 148, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 148 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCAATAATTCTATCTCCCTGAAGTCGCA
GTTGAGCAGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCGAG
Found at i:45466132 original size:128 final size:128
Alignment explanation
Indices: 45465952--45466238 Score: 405
Period size: 128 Copynumber: 2.2 Consensus size: 128
45465942 AGATGGCGAA
* * * * **
45465952 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGCCACTAATCATATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCATATCTCCCTAAAGTCACA
* *
45466017 GTGGAGTGAATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAAATCGCATCGAG
66 GTGGAGCGAATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAAATCACATCGAG
* *
45466080 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAATAATTC-TATCTCCCTAAAGTCAC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAA-TCATATCTCCCTAAAGTCAC
* * * * * *
45466144 AGTGGAGCGGATTAAAATCACAGATCTTATCTTTCTGAAGTTGCAGAGAGTAGATCACATCTAG
65 AGTGGAGCGAATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAAATCACATCGAG
*
45466208 TCTTATCTCCCTGAAGTTGCATTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
45466239 CTAAGTAAGC
Statistics
Matches: 139, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 137 0.99
129 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (128 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCATATCTCCCTAAAGTCACA
GTGGAGCGAATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGAGAGCAAATCACATCGAG
Found at i:45466327 original size:45 final size:43
Alignment explanation
Indices: 45465173--45466585 Score: 334
Period size: 44 Copynumber: 32.6 Consensus size: 43
45465163 TCGCATCTAG
* *
45465173 TCTTATCTCCCTAAAGTTGCAGTGGAGAAGACTAAGTAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* *
45465216 GCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAG-ATAGCGAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-AA
* * * * *
45465262 TCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* * ** * * *
45465306 TCCTATCTCCCTGAAGTTGCACTGGAGTGGATTAAAATCA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
* * * * * **
45465350 TATTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CAGCGGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
* * * * *
45465390 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* ** * * * * *
45465434 T-TCTATCTCCCTAAAGTCACAGTGGAACGGATTAAAATCA-CAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
** * * * * *
45465478 TCTTATCTCTTTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
* *
45465518 TATTATCTCTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* * *
45465561 GCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTAAAG-ATGGCGAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-AA
* * * * *
45465607 TCTTATCTCCCCGAAGTTACAGTGGAGCAGATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* * * * *
45465651 T-TCTATCTCCCTGAAGTCGCAGTTGAGCAGATTAAAATCA-CAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
* * * * * **
45465695 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCGGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
* * * * * *
45465735 TCTTATCTCCCTAAAATTGCAGTGGAGCAAATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* * * * *
45465779 T-TCTATCTCCCTGAAGTCGCAGTTGAGCAGATTAAAATCA-CAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
* * * * * *
45465823 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
45465863 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* * *
45465906 GCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAG-ATGGCGAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-AA
* * * **
45465952 TCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGCCA-CTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGC-AA
* * * * *
45465996 TCATATCTCCCTGAAGTTGCAGTGGAG-TGAATTAAAATCA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ACT-AAGTAAGCA-A
* * * * * * * *
45466040 TCTTATCTCTCTGAAGTTACAG-AGAGCA-AAT-CG-CATCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
* * * * *
45466080 TCTTATCTCCCTAAAATTGCAGTGGAGCAGATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* ** * * * *
45466124 T-TCTATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCA-CAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
** * * * * * *
45466168 TCTTATCTTTCTGAAGTTGCAG-AGAGTAGA-TCA--CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
*
45466208 TCTTATCTCCCTGAAGTTGCATTGGAGCAGACTAAGTAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
* * *
45466251 GCTTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAG-ATGGCGAA
1 TC-TTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-AA
* * * *
45466297 TCTTATCTCCCTGAAGTTGGAGTGGAGCAGATTAAAGCCAA-TAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
* * * ** * * *
45466341 TCCTATCTCCCTGAAGTTGTAGTGAAGTGGATTAAAATCA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-A
* * * * * *
45466385 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCAGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-A
* * * *
45466425 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACGCAAGAAAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC-TAAGTAAGC-AA
* * * *
45466470 TCTTATCTCCCTGAAGTAGCAGGGGAGCAGACTCAAGAAATCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCAA
* * * * * *
45466514 GTCTTATCCCCCTGAAATTGTAGTGGGGCAGACTAAATAAACAAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AA
* * *
45466559 TCTCATCTCCCTAAAGTTGTAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
45466586 TGGATTAGAA
Statistics
Matches: 1016, Mismatches: 246, Indels: 214
0.69 0.17 0.14
Matches are distributed among these distances:
39 14 0.01
40 145 0.14
41 49 0.05
42 16 0.02
43 72 0.07
44 492 0.48
45 199 0.20
46 26 0.03
47 3 0.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAA
Found at i:45466581 original size:44 final size:46
Alignment explanation
Indices: 45466429--45466583 Score: 113
Period size: 45 Copynumber: 3.5 Consensus size: 46
45466419 ATCAGGTCTT
* * * ** * * * *
45466429 ATCTCCCTGAAGTTGCAGT-GGAGTAGACGCAAGAAAGCGAGTCTT
1 ATCTCCCTAAAGTTGTAGTGGGAGCAGACTAAAGAAATCAAATCTC
* * * * * *
45466474 ATCTCCCTGAAGTAGCAG-GGGAGCAGACTCAAGAAATCAAGTCTT
1 ATCTCCCTAAAGTTGTAGTGGGAGCAGACTAAAGAAATCAAATCTC
* *
45466519 ATCCCCCTGAAA-TTGTAGTGGG-GCAGACTAAATAAA-CAAATCTC
1 ATCTCCCT-AAAGTTGTAGTGGGAGCAGACTAAAGAAATCAAATCTC
45466563 ATCTCCCTAAAGTTGTAGTGG
1 ATCTCCCTAAAGTTGTAGTGG
45466584 AGTGGATTAG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
43 3 0.03
44 22 0.24
45 62 0.67
46 5 0.05
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (46 bp):
ATCTCCCTAAAGTTGTAGTGGGAGCAGACTAAAGAAATCAAATCTC
Found at i:45467353 original size:23 final size:23
Alignment explanation
Indices: 45467309--45467353 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
45467299 TCTTATTTTG
* *
45467309 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
45467332 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
45467354 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:45468760 original size:117 final size:117
Alignment explanation
Indices: 45468626--45468839 Score: 428
Period size: 117 Copynumber: 1.8 Consensus size: 117
45468616 TACCTCTGAA
45468626 AATTAGAATTTTGGACAAATTTTATTAACGCATTGGGTGTGACATTTTCTTTCTCCGAAATGATA
1 AATTAGAATTTTGGACAAATTTTATTAACGCATTGGGTGTGACATTTTCTTTCTCCGAAATGATA
45468691 AGAGTCTTAATAAGTAACGTTTTTTAAGTTTTGGACTAATTCATTTTTGAGG
66 AGAGTCTTAATAAGTAACGTTTTTTAAGTTTTGGACTAATTCATTTTTGAGG
45468743 AATTAGAATTTTGGACAAATTTTATTAACGCATTGGGTGTGACATTTTCTTTCTCCGAAATGATA
1 AATTAGAATTTTGGACAAATTTTATTAACGCATTGGGTGTGACATTTTCTTTCTCCGAAATGATA
45468808 AGAGTCTTAATAAGTAACGTTTTTTAAGTTTT
66 AGAGTCTTAATAAGTAACGTTTTTTAAGTTTT
45468840 TATTAAGGAT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 97 1.00
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.42
Consensus pattern (117 bp):
AATTAGAATTTTGGACAAATTTTATTAACGCATTGGGTGTGACATTTTCTTTCTCCGAAATGATA
AGAGTCTTAATAAGTAACGTTTTTTAAGTTTTGGACTAATTCATTTTTGAGG
Found at i:45470988 original size:19 final size:19
Alignment explanation
Indices: 45470964--45471003 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
45470954 ATCTTAACAA
45470964 TATTTTATTAATTTACTAT
1 TATTTTATTAATTTACTAT
45470983 TATTTTATTAATTTACTAT
1 TATTTTATTAATTTACTAT
45471002 TA
1 TA
45471004 AAGTGATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTTATTAATTTACTAT
Found at i:45470989 original size:11 final size:11
Alignment explanation
Indices: 45470969--45471004 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
45470959 AACAATATTT
45470969 TATTAATTTAC
1 TATTAATTTAC
45470980 TATT-ATTT--
1 TATTAATTTAC
45470988 TATTAATTTAC
1 TATTAATTTAC
45470999 TATTAA
1 TATTAA
45471005 AGTGATTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.18
9 4 0.18
10 4 0.18
11 10 0.45
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (11 bp):
TATTAATTTAC
Found at i:45471450 original size:9 final size:9
Alignment explanation
Indices: 45471436--45471466 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
45471426 GTTAAACGAA
45471436 TCGAGTTAT
1 TCGAGTTAT
*
45471445 TCGAGTTAA
1 TCGAGTTAT
45471454 TCGAGTTAT
1 TCGAGTTAT
45471463 TCGA
1 TCGA
45471467 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:45471540 original size:18 final size:18
Alignment explanation
Indices: 45471519--45471555 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45471509 TGAGTTTTCG
45471519 AATTCAAATAACTCGAAT
1 AATTCAAATAACTCGAAT
*
45471537 AATTCAAATAATTCGAAT
1 AATTCAAATAACTCGAAT
45471555 A
1 A
45471556 TCAAACTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (18 bp):
AATTCAAATAACTCGAAT
Found at i:45473172 original size:5 final size:5
Alignment explanation
Indices: 45473162--45473197 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
45473152 TTGTTTTCTC
* *
45473162 TCTTT TCTTT TCTTT TCATT TCTTT TCTCT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
45473198 AATTTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:45473187 original size:20 final size:20
Alignment explanation
Indices: 45473162--45473202 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
45473152 TTGTTTTCTC
* *
45473162 TCTTTTCTTTTCTTTTCATT
1 TCTTTTCTCTTCTTTTAATT
45473182 TCTTTTCTCTTCTTTTAATT
1 TCTTTTCTCTTCTTTTAATT
45473202 T
1 T
45473203 AAATAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTTTCTCTTCTTTTAATT
Found at i:45475194 original size:25 final size:26
Alignment explanation
Indices: 45475165--45475213 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
45475155 CAACAAAAAT
*
45475165 AAAATATATTC-TAAAAAGAAAAGGG
1 AAAATATAATCTTAAAAAGAAAAGGG
* *
45475190 AAAATCTAATCTTAAAATGAAAAG
1 AAAATATAATCTTAAAAAGAAAAG
45475214 AAAAGAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAATATAATCTTAAAAAGAAAAGGG
Found at i:45476464 original size:288 final size:285
Alignment explanation
Indices: 45475948--45476495 Score: 626
Period size: 288 Copynumber: 1.9 Consensus size: 285
45475938 AAGGAACATG
*
45475948 GCAAACCTAAAAGAATAAAAAGCTAAGCATTCATCTCTAAGACCCTTAAGGAATTTAAATTATAT
1 GCAAACCTAAAAGAATAAAAAGCTAAGCAGTCATCTCTAAGACCCTTAAGGAATTTAAATTATAT
* * *
45476013 ATAACCACGCAATGTTTTAATTGAAAAATTAATGATATTAACTATTTGAACTAACTAATAACATT
66 ATAACCACACAATATTTTAATTGAAAAATTAACGATATTAACTATTTGAACTAACTAATAACATT
* * * * * * * * *
45476078 ATGAAAATATAGGGACCAAATTATATTAGAAATTAAAGTGATGCAGTTAAATTTTAAATTTGGGC
131 ATAAAAATATAGAGACCAAATTATATTAGAAATTAAAGTCATGAAATTAAATATAAAATTTAGAC
* *** *
45476143 ATCATAAAGGGACCAAAATTGAAATTTAATCATTTTTGTAAAACTACAAAAAAGAAAAAAAAAAG
196 ATCATAAAGAGACCAAAACAAAAATTTAATCATTTTGGTAAAA-T-CAAAAAAG-AAAAAAAAAG
45476208 AAAAGAAAAGAGATAAGGTAAGACCTAT
258 AAAAGAAAAGAGATAAGGTAAGACCTAT
* * * *
45476236 GCAAACCTAAAAGAAATAGAAAA-CTACG-AGTCAATTTCTAAGACTCTTAAGGTATTTAAA-TA
1 GCAAACCTAAAAG-AATA-AAAAGCTAAGCAGTC-ATCTCTAAGACCCTTAAGGAATTTAAATTA
* * * *
45476298 TATATAA-CATCATAATATTTTAATTGAAAAGTTAACGATATTAACTATTT-AGACTAATTTATA
63 TATATAACCA-CACAATATTTTAATTGAAAAATTAACGATATTAACTATTTGA-ACTAACTAATA
* * * * *
45476361 ATATTATAAAAATATTGAGACTAATTTATGTTA-AAAGTTAAAGTACAT-AAATTAAATATAAAA
126 ACATTATAAAAATATAGAGACCAAATTATATTAGAAA-TTAAAGT-CATGAAATTAAATATAAAA
* * * *
45476424 TTTAGACAT-ATTAGAGATACCAAAACAAAAATTTAATCATTTTGGTAAAATGAAAAAAGAAAAG
189 TTTAGACATCA-TAAAGAGACCAAAACAAAAATTTAATCATTTTGGTAAAATCAAAAAAGAAAAA
45476488 AAAAGAAA
253 AAAAGAAA
45476496 GAGAGCATGG
Statistics
Matches: 217, Mismatches: 35, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
285 12 0.06
286 7 0.03
287 8 0.04
288 152 0.70
289 34 0.16
290 4 0.02
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.29
Consensus pattern (285 bp):
GCAAACCTAAAAGAATAAAAAGCTAAGCAGTCATCTCTAAGACCCTTAAGGAATTTAAATTATAT
ATAACCACACAATATTTTAATTGAAAAATTAACGATATTAACTATTTGAACTAACTAATAACATT
ATAAAAATATAGAGACCAAATTATATTAGAAATTAAAGTCATGAAATTAAATATAAAATTTAGAC
ATCATAAAGAGACCAAAACAAAAATTTAATCATTTTGGTAAAATCAAAAAAGAAAAAAAAAGAAA
AGAAAAGAGATAAGGTAAGACCTAT
Found at i:45478395 original size:62 final size:62
Alignment explanation
Indices: 45478324--45478448 Score: 205
Period size: 62 Copynumber: 2.0 Consensus size: 62
45478314 AATATCATAG
* *
45478324 AAAATTTCTTAAATTTAACTATTAATCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
1 AAAATTTCTTAAATTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
* * *
45478386 AAAATTTCTTAAATTAAACTATTAACCTAATGTCTTTATGCAAAAACTTTAAGAGCAAAGAT
1 AAAATTTCTTAAATTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
45478448 A
1 A
45478449 GAACGGCGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.34
Consensus pattern (62 bp):
AAAATTTCTTAAATTAAACTATTAACCTAATGTCTTTATGCAAAAACATTAAAACCAAAGAT
Found at i:45478962 original size:25 final size:26
Alignment explanation
Indices: 45478934--45478992 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
45478924 AACTAAATAT
*
45478934 ACTAGT-TTAAATATTTATTTAGGAA
1 ACTAGTGTTAAATAATTATTTAGGAA
*
45478959 ACTAGTTGTGTTAAATAATTATTTAGTAA
1 ACTA---GTGTTAAATAATTATTTAGGAA
45478988 ACTAG
1 ACTAG
45478993 ATGAAGTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
25 4 0.14
26 1 0.04
28 2 0.07
29 21 0.75
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (26 bp):
ACTAGTGTTAAATAATTATTTAGGAA
Found at i:45481954 original size:31 final size:31
Alignment explanation
Indices: 45481913--45481974 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
45481903 AGATAATTTT
45481913 AAAGAATTTTATTAAGATTCAATTACTCTTG
1 AAAGAATTTTATTAAGATTCAATTACTCTTG
* *
45481944 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAATTTTATTAAGATTCAATTACTCTTG
45481975 TAATTTGCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (31 bp):
AAAGAATTTTATTAAGATTCAATTACTCTTG
Found at i:45482554 original size:12 final size:12
Alignment explanation
Indices: 45482539--45482580 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
45482529 AAGAAGAAGC
45482539 AAAAAGCGCAAA
1 AAAAAGCGCAAA
45482551 AAAAAGCGCAAAA
1 AAAAAGCGC-AAA
*
45482564 AAAAACCGCAAA
1 AAAAAGCGCAAA
45482576 AAAAA
1 AAAAA
45482581 AGTTGCCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.71, C:0.17, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAAGCGCAAA
Found at i:45482555 original size:13 final size:13
Alignment explanation
Indices: 45482539--45482582 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
45482529 AAGAAGAAGC
45482539 AAAAAGCGC-AAA
1 AAAAAGCGCAAAA
45482551 AAAAAGCGCAAAA
1 AAAAAGCGCAAAA
*
45482564 AAAAACCGCAAAA
1 AAAAAGCGCAAAA
45482577 AAAAAG
1 AAAAAG
45482583 TTGCCTACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 9 0.31
13 20 0.69
ACGTcount: A:0.70, C:0.16, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAGCGCAAAA
Found at i:45490157 original size:7 final size:7
Alignment explanation
Indices: 45490145--45490189 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
45490135 CCGGTCATCA
45490145 GGCCACC
1 GGCCACC
45490152 GGCCACC
1 GGCCACC
45490159 GGCCACC
1 GGCCACC
*
45490166 AGCCACC
1 GGCCACC
*
45490173 GACCACC
1 GGCCACC
45490180 GGCCACC
1 GGCCACC
45490187 GGC
1 GGC
45490190 GACGGTGCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.18, C:0.56, G:0.27, T:0.00
Consensus pattern (7 bp):
GGCCACC
Found at i:45491627 original size:267 final size:267
Alignment explanation
Indices: 45491272--45491815 Score: 793
Period size: 267 Copynumber: 2.0 Consensus size: 267
45491262 GATTTGTCAT
* *
45491272 TTGCAATGTCGGGGAAACAAGATTCGCCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGA
1 TTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGA
* *
45491337 AGTAAGAGTCACCGTTGTGGTTTCAATCTACTCCACTGTAATGCTAAAGAGATAGAATTCGCTGC
66 AGTAAGAGTCACCGTCGTGGTTTCAATCTACTCCACCGTAATGCTAAAGAGATAGAATTCGCTGC
* * *
45491402 CCACAACTTTAA-TCTGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAGGGAGATAAGATTTGC
131 CCACAACCTTAATTC-GCTCCACTTCAGCTAATCCAAGCCTTAACGCTAAGGAGATAAGATTCGC
*
45491466 CACCGTGGCTTCAATTTGCTCCGCTACAACGCCAGGGAAGTAAGACTCGCCGTCGCGGCTTCAGT
195 CACCGTGGCTTCAATTTGCTCCGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAGT
45491531 CTTTTAAA
260 CTTTTAAA
* * * * * * *
45491539 TTGCAATGTTGGGGAAACAAGATTCGCTGTCGTAGCTTCAGTCTGTTCCACTACACCGTCAGGGG
1 TTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGA
* * * *
45491604 AGTAAGATTCACCGTCGTGGTTTCAATCTGCTCGACCGTAATGCTAAAGAGATAGGATTCGCTGC
66 AGTAAGAGTCACCGTCGTGGTTTCAATCTACTCCACCGTAATGCTAAAGAGATAGAATTCGCTGC
*
45491669 CCACAGCCTTAATTCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAAGGAGATAAGATTCGCC
131 CCACAACCTTAATTCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAAGGAGATAAGATTCGCC
** * * * * * * *
45491734 GTCGTGGCTTCAATTTGCTCCGCTACAATGCCAGGGAAATAAGATTCGCCATTGTGGCTTTAATC
196 ACCGTGGCTTCAATTTGCTCCGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAGTC
**
45491799 TTTTCCA
261 TTTTAAA
45491806 TTGCAATGTC
1 TTGCAATGTC
45491816 AAGACGATAA
Statistics
Matches: 244, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
267 242 0.99
268 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (267 bp):
TTGCAATGTCGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGCTCCACTACAACGCCAGGGA
AGTAAGAGTCACCGTCGTGGTTTCAATCTACTCCACCGTAATGCTAAAGAGATAGAATTCGCTGC
CCACAACCTTAATTCGCTCCACTTCAGCTAATCCAAGCCTTAACGCTAAGGAGATAAGATTCGCC
ACCGTGGCTTCAATTTGCTCCGCTACAACGCCAGGGAAATAAGACTCGCCGTCGCGGCTTCAGTC
TTTTAAA
Found at i:45502880 original size:15 final size:15
Alignment explanation
Indices: 45502862--45502896 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
45502852 TACAAATGCC
45502862 ACAATAATAAATACA
1 ACAATAATAAATACA
*
45502877 ACAATAATATATACA
1 ACAATAATAAATACA
*
45502892 TCAAT
1 ACAAT
45502897 GGCATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:45503227 original size:9 final size:8
Alignment explanation
Indices: 45503208--45503232 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45503198 ACGTATATAT
45503208 AAAAAATA
1 AAAAAATA
45503216 AAAAAATA
1 AAAAAATA
45503224 AAAAAATA
1 AAAAAATA
45503232 A
1 A
45503233 GTAAGTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAATA
Found at i:45507966 original size:436 final size:435
Alignment explanation
Indices: 45507154--45508426 Score: 2110
Period size: 436 Copynumber: 2.9 Consensus size: 435
45507144 ATTGATTAAG
* * * * * **
45507154 AGCTTATTCAGAGATTTGGGAATTATGGCACTTGATATCTAAATTTAGTAGATGGGTAAGGTATG
1 AGCTTATTAAGAGATTTGAGAATTATGGCACTCGATATCTAGATTCAGTAGATGGGTCGGGTATG
* * *
45507219 GGGTGATACACATATAACCATTTCTTTACAATTTAGTCTATATCTCACCCTTTTTTACCAAATTG
66 GGGTGGTACACATATAACCATTTCTTCACAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
*
45507284 TAAACAATTCAAATTACACTTAGACACAAAAAAATTCGTAATTCAAACATATATACATTACATTA
131 TAAACAATTCAAATTACACTTAGACACAAACAAATTC-TAATTCAAACATATATACATTACATTA
* * *
45507349 CATATAACTACACCATATGAACTTACATGATTAAATGAGTTAAA-AAGTTGAATCGCCAGGACTA
195 CATATAACTACACCATATGAACTTACATGATTAAATGAG-CAAACAAGTTGAATCACCAGAACTA
* *
45507413 ATGGGTAATTTTGTCTTTTCCCTAGTTATCCTCGGTTTAGTTTAATTCTTGATCTATATAATAAT
259 ATGGGTAATTTTGTCTTTTTCCTAGTTATCCTCGGTTCAGTTTAATTCTTGATCTATATAATAAT
*
45507478 TCATTTCAATTTATCAATTCCAAATAACTTATATTC-TCCTATTATATGCATATGTTAAGTCAAT
324 TCATTTCAATTTATCAATTCCAAATAACTTATA-TCATCCTATTATATGCATATGTTAATTCAAT
*
45507542 TTCATCTTTATAATGCCCCCTATTCATTTCAATTTATCAATTCCAAAT
388 TTCATCTTTATAATGCCCCCTATTCATTTCAATTTATCAAATCCAAAT
* *
45507590 AGCTTATTAAGAGATTTGAGAATTGTGGCACTCGATATCCAGATTCAGTAGATGGGTCGGGTATG
1 AGCTTATTAAGAGATTTGAGAATTATGGCACTCGATATCTAGATTCAGTAGATGGGTCGGGTATG
*
45507655 GGGTGGTACACATATAACCATTTCTTCATAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
66 GGGTGGTACACATATAACCATTTCTTCACAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
* *
45507720 TAAATAATTCAAATTACACTTAGACATAAACAAATTCATAATTCAAACATATATACATTACATTA
131 TAAACAATTCAAATTACACTTAGACACAAACAAATTC-TAATTCAAACATATATACATTACATTA
*
45507785 CATATAACTAGACCATATGAACTTACATGATTAAATGAGCAAACAAGTTGAATCACCAGAACTAA
195 CATATAACTACACCATATGAACTTACATGATTAAATGAGCAAACAAGTTGAATCACCAGAACTAA
* *
45507850 TGGGTAATTTTGTCTTTTTCCTAGTTATCCTTGGTTCAGTTTAATTCTTGATCTATGTAATAATT
260 TGGGTAATTTTGTCTTTTTCCTAGTTATCCTCGGTTCAGTTTAATTCTTGATCTATATAATAATT
* *
45507915 CATTTGAATTTATCAATTCCAAATAACTTATATCATCCTATTAGATGCATATGTTAATTCAATTT
325 CATTTCAATTTATCAATTCCAAATAACTTATATCATCCTATTATATGCATATGTTAATTCAATTT
45507980 CATCTTTATAATGCCCCCTATTCATTTCAATTTATCAAATCCAAAT
390 CATCTTTATAATGCCCCCTATTCATTTCAATTTATCAAATCCAAAT
* * *
45508026 AGCTTATTAAGAGGTTTGAGAATTCTGGCACTCGATATCTAGATTCAGTAGACGGGTCGGGTATG
1 AGCTTATTAAGAGATTTGAGAATTATGGCACTCGATATCTAGATTCAGTAGATGGGTCGGGTATG
45508091 GGGTGGTACACATATAACCATTTCTTCACAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
66 GGGTGGTACACATATAACCATTTCTTCACAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
*
45508156 TAAACAACTCAAATTACACTTAGACACAAACAAATTC----TCAAACATATATACATTACATTAC
131 TAAACAATTCAAATTACACTTAGACACAAACAAATTCTAATTCAAACATATATACATTACATTAC
* *
45508217 ATATAACTACACCATATGAACTTACATGATTAAGTGGGCAAACAAGTTGAATCACCAGAACTAAT
196 ATATAACTACACCATATGAACTTACATGATTAAATGAGCAAACAAGTTGAATCACCAGAACTAAT
45508282 GGGTAATTTTGTC-TTTTCCTTAGTTATCCTCGGTTCAGTTTAATTCTTGATCTATATAATAATT
261 GGGTAATTTTGTCTTTTTCC-TAGTTATCCTCGGTTCAGTTTAATTCTTGATCTATATAATAATT
* * * *
45508346 GATTTTAATTTATTAATTCCAAATAACTTATATCATCCTTTTATATGCATATGTTAATTCAATTT
325 CATTTCAATTTATCAATTCCAAATAACTTATATCATCCTATTATATGCATATGTTAATTCAATTT
45508411 CATCTTTATAATGCCC
390 CATCTTTATAATGCCC
45508427 TCTAAAGTTT
Statistics
Matches: 787, Mismatches: 47, Indels: 11
0.93 0.06 0.01
Matches are distributed among these distances:
430 6 0.01
431 217 0.28
435 5 0.01
436 559 0.71
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (435 bp):
AGCTTATTAAGAGATTTGAGAATTATGGCACTCGATATCTAGATTCAGTAGATGGGTCGGGTATG
GGGTGGTACACATATAACCATTTCTTCACAATTTAGTCTATATCTCACCCTATTTTACCAAATTG
TAAACAATTCAAATTACACTTAGACACAAACAAATTCTAATTCAAACATATATACATTACATTAC
ATATAACTACACCATATGAACTTACATGATTAAATGAGCAAACAAGTTGAATCACCAGAACTAAT
GGGTAATTTTGTCTTTTTCCTAGTTATCCTCGGTTCAGTTTAATTCTTGATCTATATAATAATTC
ATTTCAATTTATCAATTCCAAATAACTTATATCATCCTATTATATGCATATGTTAATTCAATTTC
ATCTTTATAATGCCCCCTATTCATTTCAATTTATCAAATCCAAAT
Found at i:45510825 original size:20 final size:20
Alignment explanation
Indices: 45510800--45510842 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
45510790 ACATCATTCA
45510800 CAATAGTAGAATTCATAACC
1 CAATAGTAGAATTCATAACC
45510820 CAATAGTAGAATTCATAACC
1 CAATAGTAGAATTCATAACC
45510840 CAA
1 CAA
45510843 GTAAACGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.21, G:0.09, T:0.23
Consensus pattern (20 bp):
CAATAGTAGAATTCATAACC
Found at i:45515739 original size:58 final size:58
Alignment explanation
Indices: 45515619--45515815 Score: 218
Period size: 58 Copynumber: 3.4 Consensus size: 58
45515609 GGTATGTAGC
* * * * * * * *
45515619 GTAAGACCATGGATGAAAGATGTC-ATGGAAGCATGGTACACGATAAAATGGTAAAGGA-
1 GTAAGACCATAGATGAAAGATG-CAATGGAAGCAAGGTAAAAGGTATAA-GGTATACGAT
* * *
45515677 GTAAGACCATGGATGAAAGATGCAATGGCAGCAAGGTAAAAGGTATAAGGTATACAAT
1 GTAAGACCATAGATGAAAGATGCAATGGAAGCAAGGTAAAAGGTATAAGGTATACGAT
* ** * *
45515735 GTAAGACCATAGATGAAAGATACAATGGTGGCAAGGTAAAAGGTCTAAGGTATACGGT
1 GTAAGACCATAGATGAAAGATGCAATGGAAGCAAGGTAAAAGGTATAAGGTATACGAT
45515793 GTAAGACCATAGATGAAAGATGC
1 GTAAGACCATAGATGAAAGATGC
45515816 TATAGTTGTC
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
57 7 0.06
58 113 0.94
ACGTcount: A:0.42, C:0.11, G:0.28, T:0.19
Consensus pattern (58 bp):
GTAAGACCATAGATGAAAGATGCAATGGAAGCAAGGTAAAAGGTATAAGGTATACGAT
Found at i:45517474 original size:16 final size:16
Alignment explanation
Indices: 45517453--45517490 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
45517443 ATGATTACTG
45517453 ATTTTATTTTTAGAAT
1 ATTTTATTTTTAGAAT
*
45517469 ATTTTA-TTTTAGACT
1 ATTTTATTTTTAGAAT
45517484 ATTTTAT
1 ATTTTAT
45517491 AGCTACCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (16 bp):
ATTTTATTTTTAGAAT
Found at i:45525782 original size:15 final size:15
Alignment explanation
Indices: 45525762--45525795 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
45525752 ATTGATAATG
45525762 TTCTTAGCAAATTCT
1 TTCTTAGCAAATTCT
*
45525777 TTCTTAGCAACTTCT
1 TTCTTAGCAAATTCT
45525792 TTCT
1 TTCT
45525796 CAGTATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.50
Consensus pattern (15 bp):
TTCTTAGCAAATTCT
Found at i:45553342 original size:78 final size:78
Alignment explanation
Indices: 45553212--45553366 Score: 247
Period size: 78 Copynumber: 2.0 Consensus size: 78
45553202 TTGTCGCACT
* * * * *
45553212 GCAATTAGGCTCTGCCCTCGCACGTGCGCCACCGACTCCATGCCACGTGCCTCCAGCTGGTCTCT
1 GCAATCAGGCTCTGCCCTCACACGTGAGCCACCGACTCCACGCCACGCGCCTCCAGCTGGTCTCT
45553277 GCGCCATGCCACC
66 GCGCCATGCCACC
* *
45553290 GCAATCAGGCTCTGCCCTCACATGTGAGCCACCGACTCTACGCCACGCGCCTCCAGCTGGTCTCT
1 GCAATCAGGCTCTGCCCTCACACGTGAGCCACCGACTCCACGCCACGCGCCTCCAGCTGGTCTCT
45553355 GCGCCATGCCAC
66 GCGCCATGCCAC
45553367 GTCACTATAG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 70 1.00
ACGTcount: A:0.15, C:0.43, G:0.23, T:0.19
Consensus pattern (78 bp):
GCAATCAGGCTCTGCCCTCACACGTGAGCCACCGACTCCACGCCACGCGCCTCCAGCTGGTCTCT
GCGCCATGCCACC
Found at i:45553849 original size:7 final size:8
Alignment explanation
Indices: 45553832--45553866 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
45553822 ATTTTACCCC
45553832 TTTTTATT
1 TTTTTATT
45553840 TTTTTA-T
1 TTTTTATT
45553847 TTTTTATT
1 TTTTTATT
45553855 TTTTTATT
1 TTTTTATT
45553863 TTTT
1 TTTT
45553867 GTTGATGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTATT
Found at i:45553850 original size:15 final size:15
Alignment explanation
Indices: 45553832--45553866 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
45553822 ATTTTACCCC
45553832 TTTTTATTTTTTTAT
1 TTTTTATTTTTTTAT
45553847 TTTTTATTTTTTTAT
1 TTTTTATTTTTTTAT
45553862 TTTTT
1 TTTTT
45553867 GTTGATGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (15 bp):
TTTTTATTTTTTTAT
Found at i:45554333 original size:11 final size:14
Alignment explanation
Indices: 45554300--45554338 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
45554290 CTATTCAGAA
45554300 TATTATTATTAATC
1 TATTATTATTAATC
*
45554314 TATTATTATTAATT
1 TATTATTATTAATC
*
45554328 TTTTATTATTA
1 TATTATTATTA
45554339 TCACCATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TATTATTATTAATC
Found at i:45559180 original size:29 final size:29
Alignment explanation
Indices: 45559138--45559198 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
45559128 CTAATCCCAA
*
45559138 AAAAAAAAAGAAAAATCAAGATCAAAAAC
1 AAAAAAAAAGAAAAATCAAAATCAAAAAC
* *
45559167 AAAAAAGAAGAAAAATCAAAATCAAAATC
1 AAAAAAAAAGAAAAATCAAAATCAAAAAC
45559196 AAA
1 AAA
45559199 GTCAAAATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.75, C:0.10, G:0.07, T:0.08
Consensus pattern (29 bp):
AAAAAAAAAGAAAAATCAAAATCAAAAAC
Found at i:45559184 original size:23 final size:25
Alignment explanation
Indices: 45559135--45559193 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 25
45559125 AATCTAATCC
45559135 CAAAAA-AAAAAAGAAAAATCAAGAT
1 CAAAAACAAAAAAGAAAAA-CAAGAT
*
45559160 CAAAAACAAAAAAGAAGAA-AA-AT
1 CAAAAACAAAAAAGAAAAACAAGAT
*
45559183 CAAAATCAAAA
1 CAAAAACAAAA
45559194 TCAAAGTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 12 0.39
24 2 0.06
25 6 0.19
26 11 0.35
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (25 bp):
CAAAAACAAAAAAGAAAAACAAGAT
Found at i:45559187 original size:6 final size:6
Alignment explanation
Indices: 45559178--45559217 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
45559168 AAAAAGAAGA
* * *
45559178 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATG AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
45559218 AAGAGAGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:45561544 original size:128 final size:128
Alignment explanation
Indices: 45561307--45561926 Score: 931
Period size: 129 Copynumber: 4.8 Consensus size: 128
45561297 GTGAAATCAT
* * *
45561307 AAGTCCTATATCCTTGGTCAGCGGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAA
* ** * * *
45561372 TAGCTGAGCAGATATAA-AGCAGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCAC
66 TAGCAGAGCAGATCGAAGA-CGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
*
45561435 AAGTTCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAA
* *
45561500 TAGCAGAGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGAAGATTTAAGCCAC
66 TAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* *
45561563 AAGTCCTATATCCCTGGTTAGCAGTGGAATAGGTTGGGAAATTACAGATATTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCA
* *
45561628 GTAGC-GAAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCAC
65 ATAGCAG-AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* * *
45561692 AAGTCCTATACCCCTGGTCAACAGTGGAATAGGTTGGGAAATGACAGATCTTGTCTCCCTAAGCA
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCA
* * *
45561757 ATAGCGGAGCAGATCGAGGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
65 ATAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
* * *
45561821 AAGTCCTATATCCCTGGTCAGCAGTGGAA-AGGGCTGGGAAATTACAGATATTGTCACCCTAAGC
1 AAGTCCTATATCCCTGGTCAGCAGTGGAATA-GG-TTGGAAATTACAGATCTTGTCTCCCTAAGC
*
45561885 AATAGCAGAGCAGATCGAAGACGGTGAATCTTATCTTCAAGT
64 AATAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGT
45561927 TTGCAGTAGA
Statistics
Matches: 449, Mismatches: 37, Indels: 11
0.90 0.07 0.02
Matches are distributed among these distances:
128 149 0.33
129 298 0.66
130 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (128 bp):
AAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAA
TAGCAGAGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCAC
Found at i:45561998 original size:44 final size:42
Alignment explanation
Indices: 45561951--45562197 Score: 169
Period size: 44 Copynumber: 5.6 Consensus size: 42
45561941 ATCGCATTAG
* *
45561951 GTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAG
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGA-TGAG-AAGCAA
* * *
45561995 GTCTTATCCCCCTGAAGTTGCAGTGG-GACAGATCGAAGATGGCAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAG-CAGAT-G-AGA-AGCAA
* *
45562040 ATCTTATCTCCTTGAGGTTGCAGTGGAGCAGA--AGAAGCTGATA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGATGAGAAGC--A-A
* * *
45562083 ATCCTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGA-TGAG-AAGCAA
* * ** * *
45562127 GTCTTATCCCCCTGAAGTCACAGTGGGGCAGACCGAAGAAGCAA
1 GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGA-TG-AGAAGCAA
* * *
45562171 ATATTATCTTCCC-GAGGTTGTAGTGGA
1 GTCTTATC-TCCCTGAGGTTGCAGTGGA
45562198 ATAGATTGAA
Statistics
Matches: 159, Mismatches: 30, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
40 2 0.01
41 3 0.02
42 1 0.01
43 33 0.21
44 77 0.48
45 37 0.23
46 3 0.02
47 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (42 bp):
GTCTTATCTCCCTGAGGTTGCAGTGGAGCAGATGAGAAGCAA
Found at i:45562060 original size:45 final size:44
Alignment explanation
Indices: 45561996--45562114 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 44
45561986 AGTAAGCAGG
* * *
45561996 TCTTATCCCCCTGAAGTTGCAGTGGGA-CAGATCGAAGATGGCA-AA
1 TCTTATCTCCCTGAGGTTGCAGTGGGAGCAGA-AGAAGAT-G-ATAA
* *
45562041 TCTTATCTCCTTGAGGTTGCAGT-GGAGCAGAAGAAGCTGATAA
1 TCTTATCTCCCTGAGGTTGCAGTGGGAGCAGAAGAAGATGATAA
*
45562084 TCCTATCTCCCTGAGGTTGCAGT-GGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGGAGCAGA
45562115 CTGAGAAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 32 0.49
44 8 0.12
45 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (44 bp):
TCTTATCTCCCTGAGGTTGCAGTGGGAGCAGAAGAAGATGATAA
Found at i:45562131 original size:132 final size:132
Alignment explanation
Indices: 45561955--45562242 Score: 375
Period size: 132 Copynumber: 2.2 Consensus size: 132
45561945 CATTAGGTCT
* * * * **
45561955 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGTG
1 TATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTG
* * * * *
45562020 GGACAGATCGAAGATGGCAAATCTTATC-TCCTTGAGGTTGCAGTGGAGCAGA-AGAAG-CTGAT
66 GGACAGACCGAAGA-AGCAAATATTATCTTCC-CGAGGTTGCAGTGGAACAGATAGAAGTC-GAT
45562082 AATCC
128 AATCC
45562087 TATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTG
1 TATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTG
* * * *
45562152 GGGCAGACCGAAGAAGCAAATATTATCTTCCCGAGGTTGTAGTGGAATAGATTGAAGTCGATAAT
66 GGACAGACCGAAGAAGCAAATATTATCTTCCCGAGGTTGCAGTGGAACAGATAGAAGTCGATAAT
45562217 CC
131 CC
* *
45562219 TATCTCCCTGAAGTTACAGTGGAG
1 TATCTCCCTGAGGTTGCAGTGGAG
45562243 TGGATTAAAA
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
131 27 0.20
132 108 0.79
133 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (132 bp):
TATCTCCCTGAGGTTGCAGTGGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTG
GGACAGACCGAAGAAGCAAATATTATCTTCCCGAGGTTGCAGTGGAACAGATAGAAGTCGATAAT
CC
Found at i:45563762 original size:29 final size:29
Alignment explanation
Indices: 45563729--45563786 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
45563719 TTAAATCACA
*
45563729 TTTGTGGCCTGTTAATTTTGTTTTGTCTG
1 TTTGTGGCCTGTTAATTTTGTTCTGTCTG
45563758 TTTGTGGCCTGTTAATTTTGTTCTGTCTG
1 TTTGTGGCCTGTTAATTTTGTTCTGTCTG
45563787 CAGTTTAGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.07, C:0.12, G:0.24, T:0.57
Consensus pattern (29 bp):
TTTGTGGCCTGTTAATTTTGTTCTGTCTG
Found at i:45563849 original size:17 final size:17
Alignment explanation
Indices: 45563827--45563868 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
45563817 TCGGTAATAT
45563827 TATTATTAATCTATTAG
1 TATTATTAATCTATTAG
* *
45563844 TATTATTAATTTATTAT
1 TATTATTAATCTATTAG
45563861 TATTATTA
1 TATTATTA
45563869 TCACCGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTATTAATCTATTAG
Found at i:45563849 original size:20 final size:20
Alignment explanation
Indices: 45563824--45563869 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
45563814 TATTCGGTAA
45563824 TATTATT-ATTAATCTATTAG
1 TATTATTAATTAAT-TATTAG
* *
45563844 TATTATTAATTTATTATTAT
1 TATTATTAATTAATTATTAG
45563864 TATTAT
1 TATTAT
45563870 CACCGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTATTAATTAATTATTAG
Found at i:45569451 original size:13 final size:14
Alignment explanation
Indices: 45569433--45569461 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45569423 TCTTTTATCT
45569433 TTCTTTT-CTTTAA
1 TTCTTTTACTTTAA
45569446 TTCTTTTACTTTAA
1 TTCTTTTACTTTAA
45569460 TT
1 TT
45569462 ATAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTCTTTTACTTTAA
Found at i:45574546 original size:44 final size:44
Alignment explanation
Indices: 45574441--45574546 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 44
45574431 TAATGAATAG
* * **
45574441 AAATAGAGAAATGGAAAACATTTAGAAATGTTACGATTTTCTCTG
1 AAAT-GAGAAATGGAAATCATTTAGAAATGATACGATTTTCTCAA
** *
45574486 AAATGGAGAAAT-GAAATCATTTAGAAATGAATGTGGTTTTCTCAA
1 AAAT-GAGAAATGGAAATCATTTAGAAATG-ATACGATTTTCTCAA
45574531 AAAT-AGAAATGGAAAT
1 AAATGAGAAATGGAAAT
45574547 GAAAATGAGA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 6 0.12
44 21 0.41
45 24 0.47
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.29
Consensus pattern (44 bp):
AAATGAGAAATGGAAATCATTTAGAAATGATACGATTTTCTCAA
Found at i:45576987 original size:47 final size:48
Alignment explanation
Indices: 45576824--45577010 Score: 232
Period size: 50 Copynumber: 3.8 Consensus size: 48
45576814 GGCAGTGAGT
* * *
45576824 GTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA--GATGA
* * *
45576874 GTGCTAGTTTAAGACCACGTCTGGGTCATGGCATCGGCACGAGCAGATGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AG-AGATGA
* * * *
45576924 GAGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCTCA-AGATGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
*
45576971 GTGCTAGTGTAAGACCATGTCTGGGACATGGAATCGGCAC
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
45577011 CGATATACGA
Statistics
Matches: 117, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
47 41 0.35
49 1 0.01
50 72 0.62
51 2 0.02
52 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
Found at i:45577001 original size:97 final size:99
Alignment explanation
Indices: 45576829--45577010 Score: 269
Period size: 97 Copynumber: 1.8 Consensus size: 99
45576819 TGAGTGTGCC
*
45576829 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAGTGCTAGTTTAAGACCACGT
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGA-CGAGGAGTGCTAGTGTAAGACCACGT
* *
45576894 CTGGGTCATGGCATCGGCACGAGCAGATGAGAGTT
65 CTGGGACATGGAATCGGCACGAGCAGATGAGAGTT
* * * * *
45576929 AGTGTAAGACCATGTCTGGGACATGGCATTGGCTCA-A-GATGAGTGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACGAGGAGTGCTAGTGTAAGACCACGTC
45576992 TGGGACATGGAATCGGCAC
66 TGGGACATGGAATCGGCAC
45577011 CGATATACGA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
97 40 0.54
99 1 0.01
100 33 0.45
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.21
Consensus pattern (99 bp):
AGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACGAGGAGTGCTAGTGTAAGACCACGTC
TGGGACATGGAATCGGCACGAGCAGATGAGAGTT
Found at i:45578639 original size:141 final size:141
Alignment explanation
Indices: 45578385--45578643 Score: 518
Period size: 141 Copynumber: 1.8 Consensus size: 141
45578375 TGTGTATGCA
45578385 AAATGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAA
1 AAATGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAA
45578450 ACCACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGAT
66 ACCACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGAT
45578515 ACATGTTGATG
131 ACATGTTGATG
45578526 AAATGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAA
1 AAATGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAA
45578591 ACCACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAA
66 ACCACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAA
45578644 GTGTTTCCAA
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 118 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (141 bp):
AAATGGATACAGGAGAGTTTGTGTTTTAGAGTGGGGAATTGGCTTGGAAAATAGCCAACTTCCAA
ACCACACGAGTGTGTGACCCCTGTTTTGACAAAAATTTTCTAAATTTTTCCAATTATAGTATGAT
ACATGTTGATG
Found at i:45582882 original size:50 final size:50
Alignment explanation
Indices: 45582803--45583084 Score: 306
Period size: 50 Copynumber: 5.7 Consensus size: 50
45582793 TGAGTGTGCC
* *
45582803 AGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* * * *
45582853 AGTGTAAGAGCATGTCTGGGACATGGCATCGACACGGATAGAGGAGA-G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA-ATGCT
* * * * * *
45582902 CAGTGTAAGACCATGTCTGGGACATGACATCTGCTC-G--AGATGAGTGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* * *
45582950 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGACCGAGGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
* ** * *
45583000 AGTGTAAGACCATGTCTGGGACATGGCATCGACATGGGCAGAGGAGA-GCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA-ATGCT
*
45583050 AGTGTAAGACCATGTCTGGGACATGGAATCGGCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
45583085 CGATATACGA
Statistics
Matches: 194, Mismatches: 30, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
47 37 0.19
48 1 0.01
49 2 0.01
50 153 0.79
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.33, T:0.19
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGAATGCT
Found at i:45583065 original size:147 final size:147
Alignment explanation
Indices: 45582798--45583074 Score: 482
Period size: 147 Copynumber: 1.9 Consensus size: 147
45582788 GGCAGTGAGT
*
45582798 GTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAG
1 GTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
* *
45582863 CATGTCTGGGACATGGCATCGACACGGATAGAGGAGAGTCAGTGTAAGACCATGTCTGGGACATG
66 CATGTCTGGGACATGGCATCGACACGGACAGAGGAGAGCCAGTGTAAGACCATGTCTGGGACATG
45582928 ACATCTGCTCGAGATGA
131 ACATCTGCTCGAGATGA
* * *
45582945 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGACCGAGGAGTGCTAGTGTAAGAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
* *
45583010 CATGTCTGGGACATGGCATCGACATGGGCAGAGGAGAGCCAGTGTAAGACCATGTCTGGGACATG
66 CATGTCTGGGACATGGCATCGACACGGACAGAGGAGAGCCAGTGTAAGACCATGTCTGGGACATG
45583075 GAATCGGCAC
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
147 122 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.19
Consensus pattern (147 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
CATGTCTGGGACATGGCATCGACACGGACAGAGGAGAGCCAGTGTAAGACCATGTCTGGGACATG
ACATCTGCTCGAGATGA
Found at i:45585660 original size:25 final size:25
Alignment explanation
Indices: 45585632--45585685 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
45585622 TTTTCTTTTC
* *
45585632 TTTT-TCTTTTCATTTTTAGCTTAGG
1 TTTTCTCTTTTC-TTTTTAGATTAGA
45585657 TTTTCTCTTTTCTTTTTAGATTAGA
1 TTTTCTCTTTTCTTTTTAGATTAGA
45585682 TTTT
1 TTTT
45585686 GTTTTTGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (25 bp):
TTTTCTCTTTTCTTTTTAGATTAGA
Found at i:45589002 original size:2 final size:2
Alignment explanation
Indices: 45588995--45589021 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45588985 ACTTATAATA
45588995 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
45589022 CTTTTACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45592187 original size:29 final size:29
Alignment explanation
Indices: 45592153--45592228 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 29
45592143 TGTGTTGGAA
45592153 AGAAAATTAGAGAAGAAAAAGA-TGTTGGG
1 AGAAAATTAGAGAAGAAAAA-ATTGTTGGG
45592182 AGAAAA-TAGGAGAAGAAAAAATTGTTGGG
1 AGAAAATTA-GAGAAGAAAAAATTGTTGGG
45592211 AG-AAATTGAGAGAAGAAA
1 AGAAAATT-AGAGAAGAAA
45592229 TTTTTTTGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
28 6 0.14
29 36 0.84
30 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.30, T:0.16
Consensus pattern (29 bp):
AGAAAATTAGAGAAGAAAAAATTGTTGGG
Found at i:45596726 original size:20 final size:18
Alignment explanation
Indices: 45596681--45596728 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 18
45596671 TTAAAAACAA
45596681 TTTAACTTTGATTGAAAAT
1 TTTAAC-TTGATTGAAAAT
45596700 TTCTAACTTGATTGAAATCAT
1 TT-TAACTTGATTGAAA--AT
45596721 TTTAACTT
1 TTTAACTT
45596729 AATTTAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 12 0.46
20 10 0.38
21 4 0.15
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.48
Consensus pattern (18 bp):
TTTAACTTGATTGAAAAT
Found at i:45603617 original size:49 final size:49
Alignment explanation
Indices: 45603545--45603643 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
45603535 ATAGTTTGTG
45603545 TATGCTTCTGAGGGTTTCATTAGTTTCTCTTGACCTTAATTTCTTTTTT
1 TATGCTTCTGAGGGTTTCATTAGTTTCTCTTGACCTTAATTTCTTTTTT
45603594 TATGCTTCTGAGGGTTTCATTAGTTTCTCTTGACCTTAATTTCTTTTTT
1 TATGCTTCTGAGGGTTTCATTAGTTTCTCTTGACCTTAATTTCTTTTTT
45603643 T
1 T
45603644 CTTTTTTCTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (49 bp):
TATGCTTCTGAGGGTTTCATTAGTTTCTCTTGACCTTAATTTCTTTTTT
Found at i:45603655 original size:6 final size:7
Alignment explanation
Indices: 45603633--45603664 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
45603623 TTGACCTTAA
45603633 TTTCTTTT
1 TTTC-TTT
45603641 TTTCTTT
1 TTTCTTT
45603648 TTTCTTT
1 TTTCTTT
45603655 TTTCTTT
1 TTTCTTT
45603662 TTT
1 TTT
45603665 GAAAATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTCTTT
Found at i:45615938 original size:20 final size:18
Alignment explanation
Indices: 45615896--45615949 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
45615886 TATAGAACGT
* *
45615896 AATCTTCGAAGATATG-C
1 AATCTTAGAAGATATGTA
45615913 AATCTTAGATAAGATATGTA
1 AATCTTAG--AAGATATGTA
45615933 AATCTTAGAAGATATGT
1 AATCTTAGAAGATATGT
45615950 TTCTATGATC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 7 0.22
18 9 0.28
19 8 0.25
20 8 0.25
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (18 bp):
AATCTTAGAAGATATGTA
Found at i:45626171 original size:15 final size:17
Alignment explanation
Indices: 45626151--45626187 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
45626141 GTCGACCATT
45626151 ATTATAAT-TATGG-TA
1 ATTATAATATATGGTTA
*
45626166 ATTATAATATTTGGTTA
1 ATTATAATATATGGTTA
45626183 ATTAT
1 ATTAT
45626188 TATGATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATTATAATATATGGTTA
Found at i:45630619 original size:15 final size:16
Alignment explanation
Indices: 45630599--45630636 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
45630589 TAGTCTCCTT
45630599 TAGTTTCAC-ATTCTA
1 TAGTTTCACAATTCTA
45630614 TAGTTTTCACAATTCTA
1 TAG-TTTCACAATTCTA
45630631 TAGTTT
1 TAGTTT
45630637 TCAAAGTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.14
16 9 0.43
17 9 0.43
ACGTcount: A:0.26, C:0.16, G:0.08, T:0.50
Consensus pattern (16 bp):
TAGTTTCACAATTCTA
Found at i:45630623 original size:16 final size:17
Alignment explanation
Indices: 45630602--45630639 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
45630592 TCTCCTTTAG
45630602 TTTCAC-ATTCTATAGT
1 TTTCACAATTCTATAGT
45630618 TTTCACAATTCTATAGT
1 TTTCACAATTCTATAGT
45630635 TTTCA
1 TTTCA
45630640 AAGTCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.26, C:0.18, G:0.05, T:0.50
Consensus pattern (17 bp):
TTTCACAATTCTATAGT
Found at i:45632127 original size:20 final size:20
Alignment explanation
Indices: 45632102--45632140 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45632092 CAAATTAATT
*
45632102 AATTAAATAACATTTTATTA
1 AATTAAATAACATTATATTA
45632122 AATTAAATAACATTATATT
1 AATTAAATAACATTATATT
45632141 TCACTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATAACATTATATTA
Found at i:45636177 original size:43 final size:43
Alignment explanation
Indices: 45636128--45636240 Score: 181
Period size: 43 Copynumber: 2.6 Consensus size: 43
45636118 ATGTTCCAAT
*
45636128 ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
*
45636171 TTCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
* *
45636214 ATCGATATGAGATTTCCATGTAAGACC
1 ATCGATTTGAGATTT-CGTGTAAGACC
45636241 GTGTCTGGGA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
43 54 0.84
44 10 0.16
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
Found at i:45641525 original size:48 final size:48
Alignment explanation
Indices: 45641452--45641545 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
45641442 GATTAAATGA
*
45641452 AAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTTGTAGCATGG
1 AAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGCATGG
*
45641500 AAAGAAGTAGTAGAAGTACATGTGCTGAGGCCCAATGTCGTAGCAT
1 AAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGCAT
45641546 CGGACCAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (48 bp):
AAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGCATGG
Found at i:45649369 original size:11 final size:11
Alignment explanation
Indices: 45649353--45649378 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45649343 AAAGCAGAAT
45649353 AGAAACAATAA
1 AGAAACAATAA
45649364 AGAAACAATAA
1 AGAAACAATAA
45649375 AGAA
1 AGAA
45649379 TAAAAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.08, G:0.12, T:0.08
Consensus pattern (11 bp):
AGAAACAATAA
Found at i:45652185 original size:145 final size:143
Alignment explanation
Indices: 45651978--45652265 Score: 540
Period size: 145 Copynumber: 2.0 Consensus size: 143
45651968 GTTTTTTCTG
45651978 TCTTATCGCATCCATTTTCTTTGAATTCTATTTGAATATTGCTCGTGTATAAAATAGAAATTCGT
1 TCTTATCGCATCCATTTTCTTTGAATTCTATTTGAATATTGCTCGTGTATAAAATAGAAATTCGT
45652043 TTATTCGATATATTTCCAATAGATTCTTTTTTTTTGTTATACTCTAGTCAATCAAATCTGTTGAA
66 TTATTCGATATATTTCCAATAGA-T-TTTTTTTTTGTTATACTCTAGTCAATCAAATCTGTTGAA
45652108 TTATTGTTCATATTA
129 TTATTGTTCATATTA
* *
45652123 TCTTATGGCATCCATTTTCTTTGAATTCTTTTTGAATATTGCTCGTGTATAAAATAGAAATTCGT
1 TCTTATCGCATCCATTTTCTTTGAATTCTATTTGAATATTGCTCGTGTATAAAATAGAAATTCGT
45652188 TTATTCGATATATTTCCAATAGATTTTTTTTTTGTTATACTCTAGTCAATCAAATCTGTTGAATT
66 TTATTCGATATATTTCCAATAGATTTTTTTTTTGTTATACTCTAGTCAATCAAATCTGTTGAATT
45652253 ATTGTTCATATTA
131 ATTGTTCATATTA
45652266 ATAATGAATC
Statistics
Matches: 141, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
143 54 0.38
144 1 0.01
145 86 0.61
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (143 bp):
TCTTATCGCATCCATTTTCTTTGAATTCTATTTGAATATTGCTCGTGTATAAAATAGAAATTCGT
TTATTCGATATATTTCCAATAGATTTTTTTTTTGTTATACTCTAGTCAATCAAATCTGTTGAATT
ATTGTTCATATTA
Found at i:45660303 original size:21 final size:21
Alignment explanation
Indices: 45660261--45660303 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
45660251 GGACCCATGC
*
45660261 GTGTTTGTAATTTACTTGGTA
1 GTGTTTGTAATTTACTTCGTA
*
45660282 GTGTTTGTAATTTAGTTCGTA
1 GTGTTTGTAATTTACTTCGTA
45660303 G
1 G
45660304 CCATGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.05, G:0.26, T:0.51
Consensus pattern (21 bp):
GTGTTTGTAATTTACTTCGTA
Found at i:45660389 original size:142 final size:142
Alignment explanation
Indices: 45660129--45660392 Score: 465
Period size: 142 Copynumber: 1.9 Consensus size: 142
45660119 CACTGCTTCT
45660129 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
*
45660194 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACGGACCCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGACGGACCCAT
45660259 GCGTGTTTGTAA
131 GCGTGTTTGTAA
* * *
45660271 TTTACTTGGTAGTGTTTGTAATTTAGTTCGTAGCCATGATTTTCTTGGATGACTAGTTTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
* * *
45660336 TTTTCAAGCATAACTATTTCATGGTTTCTTATTTTGGTAACTGGTTTGTGGGAGGAC
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGAC
45660393 CCATGCATGT
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
142 115 1.00
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.43
Consensus pattern (142 bp):
TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGACGGACCCAT
GCGTGTTTGTAA
Found at i:45660792 original size:22 final size:22
Alignment explanation
Indices: 45660764--45660807 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
45660754 CTGTGTCACC
45660764 TGGTAAAATTGCATATGATCAT
1 TGGTAAAATTGCATATGATCAT
45660786 TGGTAAAATTGCATATGATCAT
1 TGGTAAAATTGCATATGATCAT
45660808 ACCTTGAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TGGTAAAATTGCATATGATCAT
Found at i:45664605 original size:24 final size:22
Alignment explanation
Indices: 45664561--45664613 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
45664551 CTTCTTCTCT
*
45664561 TTTTTTTTAAATAAGATTTTTA
1 TTTTTTTTAAATAAGAGTTTTA
*
45664583 TTTTTTTTAAACCTAATAGTTTTA
1 TTTTTTTTAAA--TAAGAGTTTTA
*
45664607 GTTTTTT
1 TTTTTTT
45664614 ATTTTTGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 11 0.42
24 15 0.58
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (22 bp):
TTTTTTTTAAATAAGAGTTTTA
Found at i:45669290 original size:13 final size:13
Alignment explanation
Indices: 45669272--45669299 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
45669262 CAGTACCTTG
45669272 GAGAATTTCTATC
1 GAGAATTTCTATC
45669285 GAGAATTTCTATC
1 GAGAATTTCTATC
45669298 GA
1 GA
45669300 AGATTCTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (13 bp):
GAGAATTTCTATC
Found at i:45671997 original size:40 final size:40
Alignment explanation
Indices: 45671942--45672117 Score: 228
Period size: 40 Copynumber: 4.4 Consensus size: 40
45671932 TGTCATACTC
* * *
45671942 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATAAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCT
*
45671982 TCTGTTTGGCGTGTTTCGGTTGGATCAGA-ACTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCA-ACTCTTATGAGCT
* * *
45672022 TTTGTTTGGCGTGTTTTGGTTGGATCAACGCTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCT
* * *
45672062 TTTGTTTGGCATGTTTCGGTTGGACCAACTCTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCT
* *
45672102 TCTGTCTGGTGTGTTT
1 TCTGTTTGGCGTGTTT
45672118 GATTGATCTG
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.99
ACGTcount: A:0.13, C:0.15, G:0.28, T:0.44
Consensus pattern (40 bp):
TCTGTTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCT
Found at i:45682283 original size:27 final size:28
Alignment explanation
Indices: 45682245--45682304 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
45682235 AGTTGCCAGC
*
45682245 ACAGT-ATATGTAGCAAAGCCACCAGTA
1 ACAGTAATATGTAGCAAAGCCACCAGAA
*
45682272 ACAGTAAT-TGTAGCAGAGCCACCAGAA
1 ACAGTAATATGTAGCAAAGCCACCAGAA
45682299 ACAGTA
1 ACAGTA
45682305 CTTCCTCCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.17
Consensus pattern (28 bp):
ACAGTAATATGTAGCAAAGCCACCAGAA
Found at i:45682476 original size:27 final size:27
Alignment explanation
Indices: 45682445--45682609 Score: 199
Period size: 27 Copynumber: 6.1 Consensus size: 27
45682435 GGGTATTATA
*
45682445 GTAATTTTACCCATC-AGGGGTATTTCA
1 GTAATTTTACCCATCGA-GGGTATTTCG
* * * *
45682472 ATAATTTTATCCATCGAGAGTATTTCT
1 GTAATTTTACCCATCGAGGGTATTTCG
* * *
45682499 GTAATTTTATCCATCAAGAGTATTTCG
1 GTAATTTTACCCATCGAGGGTATTTCG
45682526 GTAATTTTACCCATCGAGGGTATTTCG
1 GTAATTTTACCCATCGAGGGTATTTCG
45682553 GTAATTTTACCCATCGAGGGTATCTT-G
1 GTAATTTTACCCATCGAGGGTAT-TTCG
* * *
45682580 ATAATTTTATCTATCGAGGGTATTTCG
1 GTAATTTTACCCATCGAGGGTATTTCG
45682607 GTA
1 GTA
45682610 CAGTTAACGA
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.02
27 116 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCATCGAGGGTATTTCG
Found at i:45682585 original size:81 final size:81
Alignment explanation
Indices: 45682445--45682609 Score: 226
Period size: 81 Copynumber: 2.0 Consensus size: 81
45682435 GGGTATTATA
* *
45682445 GTAATTTTACCCATCAGGGGTATTTCAATAATTTTATCCATCGAGAGTATTTCTGTAATTTTATC
1 GTAATTTTACCCATCAGGGGTATTTCAATAATTTTACCCATCGAGAGTATCTCTGTAATTTTATC
45682510 CATCAAGAGTATTTCG
66 CATCAAGAGTATTTCG
** *
45682526 GTAATTTTACCCATC-GAGGGTATTTCGGTAATTTTACCCATCGAGGGTATCT-TGATAATTTTA
1 GTAATTTTACCCATCAG-GGGTATTTCAATAATTTTACCCATCGAGAGTATCTCTG-TAATTTTA
* * *
45682589 TCTATCGAGGGTATTTCG
64 TCCATCAAGAGTATTTCG
45682607 GTA
1 GTA
45682610 CAGTTAACGA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.04
81 71 0.96
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (81 bp):
GTAATTTTACCCATCAGGGGTATTTCAATAATTTTACCCATCGAGAGTATCTCTGTAATTTTATC
CATCAAGAGTATTTCG
Found at i:45689748 original size:19 final size:19
Alignment explanation
Indices: 45689724--45689815 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
45689714 AATCTTCAGG
45689724 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45689743 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
45689762 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45689781 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45689800 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
45689816 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45689841 original size:22 final size:22
Alignment explanation
Indices: 45689724--45689838 Score: 94
Period size: 19 Copynumber: 5.7 Consensus size: 22
45689714 AATCTTCAGG
45689724 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
45689743 GATATGCAATCTTAG-ATATAAT
1 GATATGCAATCTTAGAAGAT-AT
45689765 -ATAT--AATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
45689781 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
45689800 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
45689822 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
45689839 GATTTAATTT
Statistics
Matches: 82, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.02
17 7 0.09
19 44 0.54
21 7 0.09
22 10 0.12
23 12 0.15
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:45690501 original size:22 final size:23
Alignment explanation
Indices: 45690473--45690515 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
45690463 TATAATTTTT
45690473 TATATGTA-ATTATTT-TTTTATC
1 TATATGTATA-TATTTATTTTATC
45690495 TATATGTATATATTTATTTTA
1 TATATGTATATATTTATTTTA
45690516 GTATACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (23 bp):
TATATGTATATATTTATTTTATC
Found at i:45698926 original size:44 final size:44
Alignment explanation
Indices: 45698872--45699059 Score: 145
Period size: 44 Copynumber: 4.3 Consensus size: 44
45698862 GGCAGTGAAA
*
45698872 TAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
* * * * * * **
45698916 CAGATCGAAGATGGCGGATTTTACCTCCCT--GTGGTACAGTGGAG
1 TAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAGT--AGTGGAG
* * * * *
45698960 TACATTGAAGCTAGT-A-AT-TCTA-CTTCCCTAGGCAATAGTGGAA
1 TAGATTGAAGAT-GTCAGATCT-TATC-TCCCTAAGCAGTAGTGGAG
*
45699003 TAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
1 TAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
*
45699047 TAGATCGAAGATG
1 TAGATTGAAGATG
45699060 GTGGATTTTA
Statistics
Matches: 106, Mismatches: 27, Indels: 22
0.68 0.17 0.14
Matches are distributed among these distances:
42 6 0.06
43 26 0.25
44 69 0.65
45 5 0.05
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
TAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAGTAGTGGAG
Found at i:45699035 original size:131 final size:132
Alignment explanation
Indices: 45698801--45699164 Score: 542
Period size: 131 Copynumber: 2.8 Consensus size: 132
45698791 NNNNNNNNNN
* **
45698801 GATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA-TCTATCTCCCTGGTTGGC
1 GATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCTGGTCAGC
*
45698865 AGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
66 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
45698930 CG
131 CG
45698932 GATTTTACCTCCCTGTGG-TACAGTGGAGTACATTGAAGCTAGTAATTCTA-CTTCCCTAGG-CA
1 GATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATC-TCCCT-GGTCA
** *
45698994 ATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAT
64 GCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT
*
45699059 GGTG
129 GGCG
* *
45699063 GATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAG-TCAGTAATCCTATCTCCCTGGTCAG
1 GATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCT-AGTAATTCTATCTCCCTGGTCAG
* *
45699127 CAGTGGAATAGGTTGAAGATTGTAAG-TCTTATCTCCCT
65 CAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
45699165 GCAGTTGCAG
Statistics
Matches: 211, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
130 27 0.13
131 112 0.53
132 68 0.32
133 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (132 bp):
GATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTATCTCCCTGGTCAGC
AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
CG
Found at i:45699454 original size:22 final size:23
Alignment explanation
Indices: 45699426--45699470 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45699416 ATATAATCTT
45699426 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
45699448 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
45699471 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:45699473 original size:22 final size:21
Alignment explanation
Indices: 45699399--45699473 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 21
45699389 NNNNNNNNNC
* *
45699399 AATCTTAGATATGA-GATATAT
1 AATCTTAGAGAT-ATGATATGT
*
45699420 AATCTT--AGATATGATATGC
1 AATCTTAGAGATATGATATGT
*
45699439 AATCTTAGAAGATATGATTTTGT
1 AATCTTAG-AGATATGA-TATGT
45699462 AATCTTAGAGAT
1 AATCTTAGAGAT
45699474 TTAATTTGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
18 1 0.02
19 14 0.32
21 6 0.14
22 12 0.27
23 11 0.25
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.39
Consensus pattern (21 bp):
AATCTTAGAGATATGATATGT
Found at i:45702138 original size:13 final size:13
Alignment explanation
Indices: 45702120--45702149 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
45702110 TAACTTTTTT
45702120 ATTTCAAATATTC
1 ATTTCAAATATTC
45702133 ATTTCAAATATTC
1 ATTTCAAATATTC
45702146 ATTT
1 ATTT
45702150 TCACATAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTTCAAATATTC
Found at i:45702596 original size:24 final size:24
Alignment explanation
Indices: 45702577--45702658 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
45702567 CCTTTTTTAT
45702577 CTTTTCATTGGTATCATTTTCGAC
1 CTTTTCATTGGTATCATTTTCGAC
* * *
45702601 CTTTTCATTGGTAACCTTTTCAAC
1 CTTTTCATTGGTATCATTTTCGAC
* * *
45702625 CTTTCCA-TGGTTATCCTTTTCAAC
1 CTTTTCATTGG-TATCATTTTCGAC
*
45702649 CTTTCCATTG
1 CTTTTCATTG
45702659 TTTCAGGAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
23 3 0.06
24 46 0.90
25 2 0.04
ACGTcount: A:0.17, C:0.26, G:0.10, T:0.48
Consensus pattern (24 bp):
CTTTTCATTGGTATCATTTTCGAC
Found at i:45705072 original size:15 final size:16
Alignment explanation
Indices: 45705052--45705095 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
45705042 ATATATTTAG
45705052 AAAAAAAAAGAAA-AT
1 AAAAAAAAAGAAATAT
*
45705067 AAAAAAATAAGAAATTT
1 AAAAAAA-AAGAAATAT
*
45705084 AAAAATAAAGAA
1 AAAAAAAAAGAA
45705096 TAAATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.28
16 11 0.44
17 7 0.28
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAAAAAGAAATAT
Found at i:45705118 original size:20 final size:21
Alignment explanation
Indices: 45705062--45705108 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
45705052 AAAAAAAAAG
* *
45705062 AAAATAAAAAAATAAGAAATTTA
1 AAAAT-AAAGAATAA-ATATTTA
45705085 AAAATAAAGAATAAATATTTA
1 AAAATAAAGAATAAATATTTA
45705106 AAA
1 AAA
45705109 TAATAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 8 0.36
23 5 0.23
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (21 bp):
AAAATAAAGAATAAATATTTA
Found at i:45711035 original size:16 final size:16
Alignment explanation
Indices: 45711015--45711067 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 16
45711005 TTGGTTCGCT
*
45711015 GTAATGAAATAGAGGT
1 GTAATGAAATAGAGGC
* *
45711031 GTAATGGAATAGATGC
1 GTAATGAAATAGAGGC
45711047 GTAATGAAATAGAGGC
1 GTAATGAAATAGAGGC
45711063 GTAAT
1 GTAAT
45711068 AGGTAAATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.42, C:0.04, G:0.30, T:0.25
Consensus pattern (16 bp):
GTAATGAAATAGAGGC
Found at i:45728776 original size:124 final size:125
Alignment explanation
Indices: 45728555--45728791 Score: 395
Period size: 124 Copynumber: 1.9 Consensus size: 125
45728545 TTAGGGTTTT
* **
45728555 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGCTTCTAATCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTCGAGTTGACGCTTCTAAGAAAATAGTATAAAATCGCTTCTAGC
45728620 AGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATGGACGCTCTTTTGCTACAG
66 AGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATGGACGCTCTTTTGCTACAG
*** * *
45728680 TAGGTCATGGAAGAAATAATTT-TTTTTGACGTTTCTGAGAAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTTCGAGTTGACGCTTCTAAGAAAATAGTATAAAATCGCTTCTAGC
45728744 AGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATGGACGCT
66 AGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATGGACGCT
45728792 AATAGTATAA
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
124 83 0.80
125 21 0.20
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
TAGGTCATGGAAGAAATAATTTCGAGTTGACGCTTCTAAGAAAATAGTATAAAATCGCTTCTAGC
AGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATGGACGCTCTTTTGCTACAG
Found at i:45728832 original size:71 final size:71
Alignment explanation
Indices: 45728721--45728861 Score: 165
Period size: 71 Copynumber: 2.0 Consensus size: 71
45728711 TTTCTGAGAA
* * * * * * *
45728721 AATAGTATAAAATCGCTTCTAGCAGGATGCTATGTGAGAAGAAATTGTGAAATCGCGCCCTCATG
1 AATAGTATAAAAACGCTTCAAGCAGGATGCTATATCAGAAGAAATTCTAAAATCGCGCCCACATG
45728786 GACGCT
66 GACGCT
* * * * * *
45728792 AATAGTATAAAAACGCTTCAAGTAGGATGTTTTATCAGAAGAATTTCTAAAATCGCTCCCACGTG
1 AATAGTATAAAAACGCTTCAAGCAGGATGCTATATCAGAAGAAATTCTAAAATCGCGCCCACATG
45728857 GACGC
66 GACGC
45728862 GTTTTTGCTA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (71 bp):
AATAGTATAAAAACGCTTCAAGCAGGATGCTATATCAGAAGAAATTCTAAAATCGCGCCCACATG
GACGCT
Found at i:45732218 original size:29 final size:29
Alignment explanation
Indices: 45732176--45732257 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
45732166 NNNNNNNNNN
45732176 TTTTTAATTAAATTAGGTTAGGGTTAGGG
1 TTTTTAATTAAATTAGGTTAGGGTTAGGG
45732205 TTTTTAATTAAATTAGGTTAGGGTTAGGG
1 TTTTTAATTAAATTAGGTTAGGGTTAGGG
45732234 -TTTTAATTAAATTAGGTTAGGGTT
1 TTTTTAATTAAATTAGGTTAGGGTT
45732258 TAAGGTTAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 24 0.45
29 29 0.55
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (29 bp):
TTTTTAATTAAATTAGGTTAGGGTTAGGG
Found at i:45732264 original size:29 final size:28
Alignment explanation
Indices: 45732177--45732288 Score: 154
Period size: 29 Copynumber: 3.9 Consensus size: 28
45732167 NNNNNNNNNT
45732177 TTTTAATTAAATTAGGTTAGGGTTAGGG
1 TTTTAATTAAATTAGGTTAGGGTTAGGG
45732205 TTTTTAATTAAATTAGGTTAGGGTTAGGG
1 -TTTTAATTAAATTAGGTTAGGGTTAGGG
*
45732234 TTTTAATTAAATTAGGTTAGGGTTTAAGG
1 TTTTAATTAAATTAGGTTAGGG-TTAGGG
* *
45732263 -TTAAATTAAGTTAGAGTTTAGGGTTA
1 TTTTAATTAAATTAG-G-TTAGGGTTA
45732289 AATTAGGTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
28 34 0.44
29 37 0.48
30 6 0.08
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (28 bp):
TTTTAATTAAATTAGGTTAGGGTTAGGG
Found at i:45732327 original size:21 final size:21
Alignment explanation
Indices: 45732278--45732353 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
45732268 TTAAGTTAGA
45732278 GTTTAGGG--TTAAA-TT-AG
1 GTTTAGGGTTTTAAATTTAAG
* *
45732295 GTTAAGGTTTTTAAATTTAAG
1 GTTTAGGGTTTTAAATTTAAG
* *
45732316 GTTTAGGGTTTTTAAGTTAAG
1 GTTTAGGGTTTTAAATTTAAG
*
45732337 GTTTAGGGTTTTTAATT
1 GTTTAGGGTTTTAAATT
45732354 AAATTAGGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
17 6 0.12
19 5 0.10
20 2 0.04
21 35 0.73
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (21 bp):
GTTTAGGGTTTTAAATTTAAG
Found at i:45732372 original size:29 final size:29
Alignment explanation
Indices: 45732339--45732642 Score: 170
Period size: 29 Copynumber: 11.3 Consensus size: 29
45732329 AAGTTAAGGT
*
45732339 TTAGGGTTTTTAATTAAATTAGGTTAGGA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
45732368 TTAGGGTTTTTAATT-AA-GAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
45732395 TT----TTTAATTAAATT--A-G--GTTAGGG
1 TTAGGGTTT--TT-AATTAAATTAGGTTAGGG
*
45732418 TTAGGGTTTTTAATTAAATTAGGTTAGGA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
45732447 TTAGGGTTTTTAATT-AA-GAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
45732474 TT----TTTAATTAAATT--A-G--GTTAGGG
1 TTAGGGTTT--TT-AATTAAATTAGGTTAGGG
*
45732497 TTAGGGTTTTTAATTAAATTAGGTTAGGA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
45732526 TTAGGGTTTTTAATT-AA-GAGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
45732553 TT----TTTAATTAAATT--A-G--GTTAGGG
1 TTAGGGTTT--TT-AATTAAATTAGGTTAGGG
45732576 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
*
45732605 TTAGGGCTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
45732634 TTTAGGGTT
1 -TTAGGGTT
45732643 AAATTAGGTG
Statistics
Matches: 219, Mismatches: 19, Indels: 73
0.70 0.06 0.23
Matches are distributed among these distances:
23 33 0.15
24 12 0.05
25 18 0.08
26 15 0.07
27 36 0.16
28 6 0.03
29 92 0.42
30 7 0.03
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.45
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:45732374 original size:50 final size:49
Alignment explanation
Indices: 45732318--45732592 Score: 283
Period size: 50 Copynumber: 5.3 Consensus size: 49
45732308 AATTTAAGGT
45732318 TTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGA
1 TTAGGGTTTTTAA-TTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGA
*
45732368 TTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAG-GTTTAGGGTTTTTAATTAAATTAGGTTAGGA
* * *
45732418 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATT-AA-GAGTTTAGGG
1 TTAGGGTTTTTAATT--A--AGG-T----TTAGGGTTTTTAATTAAATTAGGTTAGGA
*
45732474 TT----TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGA
1 TTAGGGTTT--TT-AATTA----AGGTTTAGGGTTTTTAATTAAATTAGGTTAGGA
*
45732526 TTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAG-GTTTAGGGTTTTTAATTAAATTAGGTTAGGA
45732576 TTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAATTAA
45732593 ATTAGGTTAG
Statistics
Matches: 194, Mismatches: 9, Indels: 44
0.79 0.04 0.18
Matches are distributed among these distances:
49 7 0.04
50 119 0.61
51 2 0.01
52 13 0.07
53 7 0.04
54 7 0.04
55 9 0.05
56 13 0.07
57 2 0.01
58 15 0.08
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (49 bp):
TTAGGGTTTTTAATTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGA
Found at i:45732428 original size:79 final size:79
Alignment explanation
Indices: 45732339--45732621 Score: 548
Period size: 79 Copynumber: 3.6 Consensus size: 79
45732329 AAGTTAAGGT
45732339 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
45732404 AAATTAGGTTAGGG
66 AAATTAGGTTAGGG
45732418 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
45732483 AAATTAGGTTAGGG
66 AAATTAGGTTAGGG
45732497 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
45732562 AAATTAGGTTAGGG
66 AAATTAGGTTAGGG
* *
45732576 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGCTTTTAATTAA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAA
45732622 ATTAGGTTAG
Statistics
Matches: 202, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 202 1.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (79 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
AAATTAGGTTAGGG
Found at i:45732501 original size:108 final size:106
Alignment explanation
Indices: 45732389--45732642 Score: 336
Period size: 108 Copynumber: 2.3 Consensus size: 106
45732379 AATTAAGAGT
*
45732389 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AA-GAGGTTAGGATT----T
*
45732454 TT-TT-AATTAAG-A-GTTTAGGGTTTTTAATTAAATTAGGTTAGGG
60 TTATTAAATTAAGTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
* * *
45732497 TTAGGGTTTTTAATTAAATTAGGTTAGGATTAGGGTTTTTAATTAAGAGTTTAGGGTTTTTAATT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGAGGTTAGGATTTTT-ATT
*
45732562 AAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
65 AAATTAAG-TAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
*
45732605 TTAGGGCTTTTAATTAAATTAGGTTAGGGTTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG-TTAGGGTT
45732643 AAATTAGGTG
Statistics
Matches: 131, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
102 3 0.02
104 2 0.02
105 6 0.05
106 9 0.07
107 3 0.02
108 100 0.76
109 8 0.06
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.45
Consensus pattern (106 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGAGGTTAGGATTTTTATTA
AATTAAGTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:45733040 original size:18 final size:18
Alignment explanation
Indices: 45733017--45733051 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
45733007 CGGAAAAGGA
*
45733017 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
45733035 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
45733052 AAGCACACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:45733928 original size:20 final size:20
Alignment explanation
Indices: 45733891--45733928 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45733881 TTTATTTTTA
*
45733891 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
45733911 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
45733929 TATCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:45734871 original size:11 final size:11
Alignment explanation
Indices: 45734855--45734896 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
45734845 AAAAATGGAG
45734855 TTAAGAGAAAC
1 TTAAGAGAAAC
*
45734866 TTAAGAGGAAC
1 TTAAGAGAAAC
45734877 TTAAGA-ATAAC
1 TTAAGAGA-AAC
45734888 TTAAGAGAA
1 TTAAGAGAA
45734897 TTTTTGAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 26 0.96
12 1 0.04
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.21
Consensus pattern (11 bp):
TTAAGAGAAAC
Done.