Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 139 of 210
Found at i:46145467 original size:232 final size:232
Alignment explanation
Indices: 46145176--46145650 Score: 731
Period size: 232 Copynumber: 2.1 Consensus size: 232
46145166 ATTATGGCGG
* *
46145176 ATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCCCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
* *
46145241 AGCGGAGCAGACTGAAGACAGCG-AATCTTATCTTCCTGAAGTTACAGTAGAGCAA-ATTAAAGC
66 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTTCCTGAAGTTACAGTAGAG-AAGATTAAAGC
* *
46145304 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGCCTTG
129 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTA
* **
46145369 TCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
194 TCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
* * *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
* * *
46145473 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTA
66 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCCTGAAGTTACAGTAGAGAAGATTAAAGCTA
* *
46145538 CAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATC
131 CAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTATC
* * *
46145603 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGA
196 TCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
46145640 ATCTTAT-TTCC
1 ATCTTATCTTCC
46145651 CTGCCATTGT
Statistics
Matches: 221, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
231 7 0.03
232 214 0.97
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (232 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCCTGAAGTTACAGTAGAGAAGATTAAAGCTA
CAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTATC
TCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
Found at i:46145470 original size:89 final size:89
Alignment explanation
Indices: 46145319--46146497 Score: 544
Period size: 89 Copynumber: 12.8 Consensus size: 89
46145309 ATTATGGCAG
* *
46145319 ATCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGCCTTGTCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
46145384 AGTGGAGCAGACTAAAGACAGTGA
66 AGTGGAGCAGACTGAAGACAGCGA
* * * *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
46145473 AGCGGAGCAAACTGAAGACAG-GAA
66 AGTGGAGCAGACTGAAGACAGCG-A
* * * * * * *
46145497 ATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTACAAATTATGGCAGATCTTATCTTC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-----A--CCAG-CCTTATCTCC
** ** * * *
46145562 CTGAAGTTATAGTGGAGTTGATTGAAGCCA-CCA
56 CTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGA
** * * * * * ** * *
46145595 GCCTTATC-TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCA-T
1 ATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAG-CCACCAGCCTTATCTCCCTG-AAGT
* * * * *
46145658 TGTAGTGGAACAGGTTAAAACT-ACAAATTAGGGTA
63 TGCAGTGGAGCA-G-----ACTGA-AGA-CAGCG-A
* * *
46145693 GATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTG
1 -ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
46145758 CAGCGGAGCAGACTGAAGACAGCGA
65 CAGTGGAGCAGACTGAAGACAGCGA
** * * ** *
46145783 ATCTTAT-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTT
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC----CTTATCTC
* * * * * *
46145847 CCTAAAGTTGTAGTGGAGAAGATTGAAGCCA-CCA
55 CCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGA
** * * * * ** ** * **
46145881 GCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGCGTT
1 ATCTTATCTTCCTGAA-GTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTTATCTCCCTGAAGTT
* * * *
46145945 GCAGTGGAACAAATTAAAGCTACAAATTATGGCTG-
64 GCAGTGGAGCAGACTGAAG--AC-----A--GC-GA
* * * * *
46145980 ATCTTATCTTCTTGAAGTTTCAGTGGAGCAGATTGAAGCAACTAGCTTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
46146045 AGCGAAGCAGACTGAAGACAGCGA
66 AGTGGAGCAGACTGAAGACAGCGA
* * * * * *
46146069 ATCTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCAGCCTTATCTCCTTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
46146134 AGCGGA-CTAGACTGAAGACAGTGA
66 AGTGGAGC-AGACTGAAGACAGCGA
* * * * *
46146158 ATCTTAT-TTCCCT-AGCGTTGCAATGGAACAGATTGAAGCCACCAACCTTATCTCCCTAAAGTT
1 ATCTTATCTT-CCTGA-AGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
*
46146221 GCAGCGGAGCAGACTGAAGACAGCGA
64 GCAGTGGAGCAGACTGAAGACAGCGA
* * * ** * *
46146247 ATCTTATTTTTCTGAAGTTGCAGTGGAGTAGATTGAAATCACCAGCCTTATCTCCTTGAAGTTTC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * *
46146312 AGTGAAGTAGA-TCAA-AGCTA-CAA
66 AGTGGAGCAGACTGAAGA-C-AGCGA
* ** * *
46146335 ATCTGT-TC-TCTCTGAAATT--ATGTTGGAGCAGATCAAAGCCACAATCCTTATCTCCCTGAAG
1 ATCT-TATCTTC-CTGAAGTTGCA-G-TGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAG
* * * * * *
46146396 TTGTAGTGGAGCAGGA-TAAAAATATACAA
62 TTGCAGTGGAGCA-GACTGAAGACA-GCGA
* * * * *** ** *
46146425 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCCTGAAGTTG
46146490 CAGTGGAG
65 CAGTGGAG
46146498 TAGATCGAAT
Statistics
Matches: 811, Mismatches: 202, Indels: 152
0.70 0.17 0.13
Matches are distributed among these distances:
86 1 0.00
87 3 0.00
88 66 0.08
89 402 0.50
90 36 0.04
91 35 0.04
92 7 0.01
93 3 0.00
94 2 0.00
95 7 0.01
96 6 0.01
97 4 0.00
98 112 0.14
99 123 0.15
100 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (89 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
AGTGGAGCAGACTGAAGACAGCGA
Found at i:46145473 original size:44 final size:44
Alignment explanation
Indices: 46145321--46146309 Score: 224
Period size: 44 Copynumber: 21.4 Consensus size: 44
46145311 TATGGCAGAT
* * * *
46145321 CTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * * * **
46145365 CTTGTCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
* * *
46145410 CTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * ** **
46145454 CTTATCTCCCTGAAGTTGCAGCGGAGCAAACTGAAGACAGGAAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
* * * * * * *
46145499 ATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTACAAATTATGGCAGAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGC--C-----AT--CAG-C
* ** * ** *
46145553 CTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * * **
46145597 CTTATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* * * * * * * * * *
46145642 CTTATTTCCCTGCCA-TTGTAGTGGAACAGGTTAAAACTACAAATTAGGGTAGAT
1 CTTATCTCCCTG-AAGTTGCAGCGGAGCAGATTGAAGC--C--A-T----CAG-C
* * * * * *
46145696 CTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * **
46145740 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* ** * * * *
46145785 CTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGC--C--ATCA--GC
* * * * * *
46145835 GGATCTTATCTTCCTAAAGTTGTAGTGGAGAAGATTGAAGCCACCAGC
1 ----CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * **
46145883 CTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGTGAAT
1 CTTATCTCCCTGAA-GTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
* ** * * * * *
46145928 CTTATTTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGC--C--ATCA--GC
* * * * *
46145978 TGATCTTATCTTCTTGAAGTTTCAGTGGAGCAGATTGAAG-CAACTAGC
1 ----CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* * * * * **
46146026 TTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
** *** * * *
46146071 CTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * **
46146115 CTTATCTCCTTGAAGTTGCAGCGGA-CTAGACTGAAGACAGTGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGC-AGATTGAAGCCA-TCAGC
* * ** * * *
46146160 CTTATTTCCCT-AGCGTTGCAATGGAACAGATTGAAGCCACCAAC
1 CTTATCTCCCTGA-AGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * **
46146204 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* ** * * ** *
46146249 CTTATTTTTCTGAAGTTGCAGTGGAGTAGATTGAAATCACCAGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
*
46146293 CTTATCTCCTTGAAGTT
1 CTTATCTCCCTGAAGTT
46146310 TCAGTGAAGT
Statistics
Matches: 659, Mismatches: 229, Indels: 114
0.66 0.23 0.11
Matches are distributed among these distances:
43 2 0.00
44 269 0.41
45 244 0.37
46 2 0.00
47 5 0.01
48 7 0.01
49 4 0.01
50 4 0.01
51 1 0.00
52 4 0.01
53 3 0.00
54 114 0.17
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
Found at i:46145587 original size:375 final size:374
Alignment explanation
Indices: 46145033--46145793 Score: 998
Period size: 375 Copynumber: 2.0 Consensus size: 374
46145023 ATTATGACGG
* * *
46145033 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGT
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGC
* * * *
46145098 AACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTGGAACAAATTAAAGCTA
66 AACGAAGCAAACTAAAGACAGTGAATATTATTT-CCTAGAATTACAGTGGAACAAATTAAAGCTA
* * *
46145163 CAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTC
130 CAAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
*
46145228 CCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT-CCTG-AAGTTACAGTAG
195 CCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTAT-TTCCCTGCAA-TTACAGTAG
* * * * *
46145291 AGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCT-GATTGA
258 AACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAG-TAGATTAA
* * *
46145355 AGCCACCAGCCTTGTCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
322 AGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
* * *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCC-CTGAAGTTG
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATC-CCTCTAAAGTTG
* * * * * *
46145472 CAGCGGAGCAAACTGAAGACAG-GAAATATTATCTT-CTTGAAGTTGCAGTGGAGA-AGATTAAA
65 CAACGAAGCAAACTAAAGACAGTG-AATATTAT-TTCCTAGAA-TTACAGTGGA-ACAAATTAAA
* * **
46145534 GCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCT
126 GCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCT
* * * * **
46145599 TATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCATTGTAGT
191 TATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGCAATTACAGT
* ** *
46145664 GGAACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTA
256 AGAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTA
*
46145729 AAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGA
321 AAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
46145783 ATCTTAT-TTCC
1 ATCTTATCTTCC
46145794 CTGGCGTTGC
Statistics
Matches: 335, Mismatches: 43, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
374 12 0.04
375 317 0.95
376 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (374 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGC
AACGAAGCAAACTAAAGACAGTGAATATTATTTCCTAGAATTACAGTGGAACAAATTAAAGCTAC
AAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCC
CCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGCAATTACAGTAGAAC
AAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCC
ACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
Found at i:46145666 original size:143 final size:143
Alignment explanation
Indices: 46145408--46146075 Score: 907
Period size: 143 Copynumber: 4.7 Consensus size: 143
46145398 AAGACAGTGA
* * * * *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * *
46145473 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTT--CTTGAAGTTGCAGTGGAGA-AGATTAAA
66 AGCGGAGCAGACTGAAGACAGCG-AATCTTAT-TTCCCTGGCA-TTGCAGTGGA-ACAGATTAAA
46145534 GCTACAAATTATGGCAG
127 GCTACAAATTATGGCAG
* * *
46145551 ATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * * * *
46145616 AGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCATTGTAGTGGAACAGGTTAAAACTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
* *
46145681 CAAATTAGGGTAG
131 CAAATTATGGCAG
* * *
46145694 ATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
*
46145759 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
*
46145824 CAAATTATGGCGG
131 CAAATTATGGCAG
* *
46145837 ATCTTATCTTCCTAAAGTTGTAGTGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTG
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAA-GTTG
* * *
46145901 CAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAAATTAAAGCT
65 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCT
*
46145966 ACAAATTATGGCTG
130 ACAAATTATGGCAG
* * * * *
46145980 ATCTTATCTTCTTGAAGTT-TCAGTGGAGCAGATTGAAGCAACTAGCTTTATCTCCCTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGT-AGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
46146044 CAGCGAAGCAGACTGAAGACAGCGAATCTTAT
65 CAGCGGAGCAGACTGAAGACAGCGAATCTTAT
46146076 CTTTCTGAAG
Statistics
Matches: 466, Mismatches: 52, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
142 6 0.01
143 454 0.97
144 6 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (143 bp):
ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
CAAATTATGGCAG
Found at i:46145948 original size:518 final size:518
Alignment explanation
Indices: 46144890--46145936 Score: 1489
Period size: 518 Copynumber: 2.0 Consensus size: 518
46144880 ATTATGGCAG
* *
46144890 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
* * **
46144955 AGCAAAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAATGGAACAGATTAAAGCTA
66 AGCAAAGCAAACTGAAGACAGCGAATATTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTA
* *
46145020 CAAATTATGACGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATC
131 CAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
* * **
46145085 CCTCTAAAGTTGTAACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTGGAA
196 CCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAGCATTACAGTGGAA
* * * *
46145150 CAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGC
261 CAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGC
*
46145215 CACCAGCCTTGTCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
326 CACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
* *
46145280 AGTTACAGTAGAGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGG
391 AGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGG
** * *
46145345 AGCTGATTGAAGCCACCAGCCTTGTCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
456 AGAAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
* *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
** * *
46145473 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTT-CTTGAAGTTGCAGTGGAGA-AGATTAAAG
66 AGCAAAGCAAACTGAAGACAGCG-AATATTAT-TTCCCTGAAGTTGCAATGGA-ACAGATTAAAG
* * **
46145535 CTACAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTT
128 CTACAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTT
* * * * * * **
46145600 ATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCT-GCCATTGTAGT
193 ATCCCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAG-CATTACAGT
** * *
46145664 GGAACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAA-TTGCAGTGGAGTAGATT
257 GGAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCT-AAAGTTGCAGTGGAGCAGATT
*
46145728 AAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TT
321 AAAGCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT
** * * * *
46145792 CCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTG
386 -CCTGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTG
* *
46145857 TAGTGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGAC
450 CAGTGGAGAAGATTGAAGCCACCAGCCTTATCTCCCTGAA-GTTGCAGCGGAGCAGACTAAAGAC
46145921 AGTGA
514 AGTGA
46145926 ATCTTAT-TTCC
1 ATCTTATCTTCC
46145937 CTGGCGTTGC
Statistics
Matches: 468, Mismatches: 54, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
517 10 0.02
518 452 0.97
519 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (518 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
AGCAAAGCAAACTGAAGACAGCGAATATTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTA
CAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
CCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAGCATTACAGTGGAA
CAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGC
CACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
AGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGG
AGAAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
Found at i:46146075 original size:518 final size:513
Alignment explanation
Indices: 46144890--46146187 Score: 1377
Period size: 518 Copynumber: 2.5 Consensus size: 513
46144880 ATTATGGCAG
* * * * * *
46144890 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
** * * * ** * *
46144955 AGCAAAGCAGACTGAAGACAGCG-AATCTTATTTCCCTGGCGTTGCAATG-GAA-CAGATTAAAG
66 AGCGGAGCAAACTGAAGACA-CGAAATATTATCTCCCTGAAGTTGC-A-GCGAAGAAGACTAAAG
* *
46145017 CTACAAATTATGACGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
128 C-AC--A--ATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
* * * * * * * *
46145082 ATCCCTCTAAAGTTGTAACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTG
188 ATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATTACAGTG
* * * *
46145147 GAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGA
253 GAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAA
*
46145212 AGCCACCAGCCTTGTCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCC
318 AGCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCC
* *
46145277 TGAAGTTACAGTAGAGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAG
383 TGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAG
** * *
46145342 TGGAGCTGATTGAAGCCACCAGCCTTGTCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTG
448 TGGAGAAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTG
46145407 A
513 A
** * *
46145408 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
* * * * * *
46145473 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTA
66 AGCGGAGCAAACTGAAGACACGAAATATTATCTCCCTGAAGTTGCAGCGAAGAAGACTAAAGC-A
** **
46145538 CAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATC
130 C--A--ATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATC
** **
46145603 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCT-GCCATTGTAGTGGA
191 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAG-CATTACAGTGGA
** * *
46145667 ACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAA-TTGCAGTGGAGTAGATTAAA
255 ACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCT-AAAGTTGCAGTGGAGCAGATTAAA
*
46145731 GCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTCCC
319 GCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT-CC
** * * * * *
46145795 TGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGTAG
383 TGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAG
*
46145860 TGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGT
448 TGGAGAAGATTGAAGCCACCAGCCTTATCTCCCTGAA-GTTGCAGCGGAGCAGACTAAAGACAGT
46145924 GA
512 GA
*** * * *
46145926 ATCTTAT-TTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCTGATCTTATCTT
1 ATCTTATCTT-CCTAAAGTTGCAGCGGAACAAATTAAAGC--C--ATCA--GC----CTTATCTC
* * * * * * ** *
46145990 CTTGAAGTTTCAGTGGAGCAGATTGAAG-CAACTAGCT-TTATCTCCCTGAAGTTGCAGCGAAGC
55 CCTGAAGTTGCAGCGGAGCAAACTGAAGAC-ACGAAATATTATCTCCCTGAAGTTGCAGCGAAGA
* * * * * *
46146053 AGACTGAAG-AC-A--GC-GAATCTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCA
119 AGACTAAAGCACAATGGCAG-ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCA
* *
46146113 GCCTTATCTC-CTTGAAGTTGCAGCGGACTAGACTGAAGACAGTGAATCTTATTTCCCTAGCGTT
183 GCCTTATCTCTC-TGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATT
* *
46146177 GCAATGGAACA
247 ACAGTGGAACA
46146188 GATTGAAGCC
Statistics
Matches: 660, Mismatches: 98, Indels: 44
0.82 0.12 0.05
Matches are distributed among these distances:
516 1 0.00
517 13 0.02
518 571 0.87
519 4 0.01
520 2 0.00
522 3 0.00
524 2 0.00
525 2 0.00
527 29 0.04
528 33 0.05
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (513 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
AGCGGAGCAAACTGAAGACACGAAATATTATCTCCCTGAAGTTGCAGCGAAGAAGACTAAAGCAC
AATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCT
GAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATTACAGTGGAACAAAT
TAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACCA
GCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGAAGTTA
CAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGAAG
ATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
Found at i:46146268 original size:45 final size:45
Alignment explanation
Indices: 46146034--46146283 Score: 163
Period size: 45 Copynumber: 5.6 Consensus size: 45
46146024 GCTTTATCTC
*
46146034 CCTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATCTTT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTT
*** * * * ** *
46146080 -CTGAAGTTGCAATAGAGGAGATTGAAG-CTA-CCAGCCTTA-TCT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGAC-AGCGAATCTTATTTT
* *
46146122 CCTTGAAGTTGCAGCGGA-CTAGACTGAAGACAGTGAATCTTATTTC
1 CC-TGAAGTTGCAGCGGAGC-AGACTGAAGACAGCGAATCTTATTTT
* ** * * * * * * *
46146168 CCT-AGCGTTGCAATGGAACAGATTGAAGCCA-CCAACCTTATCTC
1 CCTGA-AGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
*
46146212 CCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
* * * *
46146257 TCTGAAGTTGCAGTGGAGTAGATTGAA
1 CCTGAAGTTGCAGCGGAGCAGACTGAA
46146284 ATCACCAGCC
Statistics
Matches: 148, Mismatches: 45, Indels: 23
0.69 0.21 0.11
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 61 0.41
45 80 0.54
46 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
Found at i:46146406 original size:44 final size:44
Alignment explanation
Indices: 46146292--46146529 Score: 139
Period size: 44 Copynumber: 5.3 Consensus size: 44
46146282 AAATCACCAG
* * *
46146292 CCTTATCTCCTTGAAGTT-TCAGTGAAGTAGATCAAAGCTACAAAT
1 CCTTATCTCCCTGAAGTTGT-AGTGGAGCAGATCAAAGCTAC-AAT
* * * *
46146337 -CTGT-TCTCTCTGAAATTAT-GTTGGAGCAGATCAAAGCCACAAT
1 CCT-TATCTCCCTGAAGTTGTAG-TGGAGCAGATCAAAGCTACAAT
* ** *
46146380 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGATAAAAATATACAAA
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCA-GAT-CAAAGCTACAAT
* * * * *
46146426 CCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAA-TTACCAAT
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCA-GATCAAAGCTA-CAAT
* * * * * *
46146471 TCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAATCTACAAGT
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCAAAGCTACAA-T
46146516 -CTCT-TCTCCCTGAA
1 CCT-TATCTCCCTGAA
46146530 ATTACATTGG
Statistics
Matches: 152, Mismatches: 29, Indels: 25
0.74 0.14 0.12
Matches are distributed among these distances:
43 5 0.03
44 69 0.45
45 41 0.27
46 37 0.24
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
CCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCAAAGCTACAAT
Found at i:46146490 original size:45 final size:46
Alignment explanation
Indices: 46146375--46146497 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
46146365 GATCAAAGCC
*
46146375 ACAATCCTTATCTCCCTGAAGTTGTAGTGGAGCAGGATAAAAATAT
1 ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
* * **
46146421 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGG-TTGAAAT-T
1 ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
* *
46146465 ACCAATTCTTATCTCCTTGAAGTTGCAGTGGAG
1 A-CAATCCTTATCTCCCTGAAGTTGCAGTGGAG
46146498 TAGATCGAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.03
45 32 0.48
46 33 0.49
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (46 bp):
ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
Found at i:46148009 original size:24 final size:25
Alignment explanation
Indices: 46147982--46148049 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
46147972 AAAAATTCTC
* *
46147982 TTTTATCATAATTTATTTTAAGTTT
1 TTTTATCATAATTTATTTTAAGCTG
*
46148007 TTTTAT-ATTATTTATTTTAAGCTG
1 TTTTATCATAATTTATTTTAAGCTG
46148031 TTTTA-CATATTATTTATTT
1 TTTTATCATA--ATTTATTT
46148050 AAATTTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 22 0.61
25 6 0.17
26 8 0.22
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTATCATAATTTATTTTAAGCTG
Found at i:46148041 original size:26 final size:24
Alignment explanation
Indices: 46147992--46148049 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 24
46147982 TTTTATCATA
**
46147992 ATTTATTTTAAGTTTTTTTATATT
1 ATTTATTTTAAGTTTTTACATATT
46148016 ATTTATTTTAAGCTGTTTTACATATT
1 ATTTATTTTAAG-T-TTTTACATATT
46148042 ATTTATTT
1 ATTTATTT
46148050 AAATTTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 12 0.40
25 1 0.03
26 17 0.57
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (24 bp):
ATTTATTTTAAGTTTTTACATATT
Found at i:46148060 original size:26 final size:26
Alignment explanation
Indices: 46147974--46148079 Score: 78
Period size: 26 Copynumber: 4.1 Consensus size: 26
46147964 TAATTTTTAA
46147974 AAATTCTCTTTTATCATA--ATTTATTTT
1 AAATT-TCTTTTA-CATATTATTTA-TTT
*
46148001 AAGTTT-TTTT--ATATTATTTATTT
1 AAATTTCTTTTACATATTATTTATTT
* ** *
46148024 TAAGCTGTTTTACATATTATTTATTT
1 AAATTTCTTTTACATATTATTTATTT
* *
46148050 AAATTTCTTTTATATATTGTTTATTGT
1 AAATTTCTTTTACATATTATTTATT-T
46148077 AAA
1 AAA
46148080 CTATTATATA
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
22 3 0.05
23 5 0.08
24 9 0.15
25 4 0.06
26 33 0.53
27 8 0.13
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (26 bp):
AAATTTCTTTTACATATTATTTATTT
Found at i:46148093 original size:52 final size:50
Alignment explanation
Indices: 46147992--46148093 Score: 114
Period size: 52 Copynumber: 2.0 Consensus size: 50
46147982 TTTTATCATA
* * * * *
46147992 ATTTATTTTAAGTTTTTTTATATTATTTATTTTAAGCTGTTTTACATATT
1 ATTTATTTAAAGTTTTTTTATATTATTTATTGTAAACTATTATACATATT
* * *
46148042 ATTTATTTAAATTTCTTTTATATATTGTTTATTGTAAACTATTATATATATT
1 ATTTATTTAAAGTT-TTTT-TATATTATTTATTGTAAACTATTATACATATT
46148094 TCAAATTTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 12 0.29
51 4 0.10
52 26 0.62
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (50 bp):
ATTTATTTAAAGTTTTTTTATATTATTTATTGTAAACTATTATACATATT
Found at i:46148129 original size:21 final size:19
Alignment explanation
Indices: 46148083--46148130 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
46148073 TTGTAAACTA
*
46148083 TTATATATATTTCAAATTT
1 TTATATATATTTAAAATTT
46148102 TGATATATATATTTAAAAATGTT
1 T--TATATATATTT-AAAAT-TT
46148125 TTATAT
1 TTATAT
46148131 TTTTTTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
21 16 0.67
22 4 0.17
23 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
TTATATATATTTAAAATTT
Found at i:46148151 original size:24 final size:23
Alignment explanation
Indices: 46148123--46148185 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
46148113 TTTAAAAATG
46148123 TTTTATATTTTTTTAGATTATTTA
1 TTTTATATTTTTTTAG-TTATTTA
* *
46148147 TTTTAAATTGTTTTATTGTTATTTA
1 TTTTATATT-TTTT-TAGTTATTTA
*
46148172 TTTT-TAGTTTTTTA
1 TTTTATATTTTTTTA
46148186 TATTTTGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 1 0.03
23 4 0.12
24 10 0.31
25 15 0.47
26 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.71
Consensus pattern (23 bp):
TTTTATATTTTTTTAGTTATTTA
Found at i:46148262 original size:17 final size:17
Alignment explanation
Indices: 46148240--46148273 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46148230 CTTATAAATC
46148240 ATTTACTTTAAAGTATT
1 ATTTACTTTAAAGTATT
*
46148257 ATTTACTTTAAATTATT
1 ATTTACTTTAAAGTATT
46148274 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTACTTTAAAGTATT
Found at i:46154282 original size:44 final size:43
Alignment explanation
Indices: 46154250--46154765 Score: 413
Period size: 40 Copynumber: 12.3 Consensus size: 43
46154240 CTGCAACTTC
* *
46154250 AAGGAGATAGGATTGGTTTCCTTCGTCTGCTCCACTACTGCTT
1 AAGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154293 AGGGAGATAAGATCTGGTTTCTTTCGTCTGTTCCATTACTGCTT
1 AAGGAGATAAGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTT
* *
46154337 ATGGAGATAAGACTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AAGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * * *
46154380 AGGGAGATAAGACTT-G-ATGTGT--TCTGCTCCACTACTGCTT
1 AAGGAGATAAGA-TTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154420 AGGGAGATAAGATTTGG--T-TGT-GATCTGCTCCACTACTACTT
1 AAGGAGATAAGA-TTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
* *
46154461 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACCGCTT
1 AAGGAGATAAGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154505 -AGGAAGATAAGACTT-G-ATGTGT--TCTGCTCCACTACTGCTT
1 AAGG-AGATAAGA-TTGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154545 AGGGAGATAAGACTT-G---ATGT-GATCTGCTCCACTACTGCTT
1 AAGGAGATAAGA-TTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
* *
46154585 AGGGAGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTT
1 AAGGAGATAAGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154629 AGGGAGATAAGACTT-G---ATGT-GATCTGCTCCACTACTGCTT
1 AAGGAGATAAGA-TTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
*
46154669 AGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
1 AAGGAGATAAGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTT
* * *
46154713 AGGGAGATAAGACTT-G---ATGT-GATCTGCTCCACTACTGCTT
1 AAGGAGATAAGA-TTGGTTTCTTTCG-TCTGCTCCACTACTGCTT
*
46154753 AGGGAGATAAGAT
1 AAGGAGATAAGAT
46154766 CTGTAATCTT
Statistics
Matches: 406, Mismatches: 36, Indels: 66
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.01
39 8 0.02
40 158 0.39
41 37 0.09
42 6 0.01
43 57 0.14
44 131 0.32
45 6 0.01
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (43 bp):
AAGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTACTGCTT
Found at i:46154622 original size:168 final size:169
Alignment explanation
Indices: 46154252--46154768 Score: 725
Period size: 168 Copynumber: 3.1 Consensus size: 169
46154242 GCAACTTCAA
* *
46154252 GGAGATAGGAT-TGGTTTCCTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
* *
46154316 TCGTCTGTTCCATTACTGCTTATGGAGATAAGACTGGTTTCTTTCGTCTGCTCCACTACTGCTTA
66 TCGTCTGCTCCACTACTGCTTA-GGAGATAAGACTGGTTTCTTTC-TCTGCTCCACTACTGCTTA
*
46154381 GGGAGATAAGACTTGATGTGTTCTGCTCCACTACTGCTTAG
129 GGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
* * *
46154422 GGAGATAAGATTTGG--T-TGT-GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGGTTTCT
1 GGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCT
* * * * *
46154483 TTCGTCTGCTCCACTACCGCTTAGGAAGATAAGACTTG-ATGTGT-TCTGCTCCACTACTGCTTA
65 TTCGTCTGCTCCACTACTGCTTAGG-AGATAAGACTGGTTTCTTTCTCTGCTCCACTACTGCTTA
46154546 GGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
129 GGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
* ** *
46154587 GGAGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGA-C---TTGATG
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
46154648 T-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCT
66 TCG-TCTGCTCCACTACTGCTTA-GGAGATAAGA-CTGGTTTCTTTC-TCTGCTCCACTACTGCT
46154712 TAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
127 TAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
46154755 GGAGATAAGATCTG
1 GGAGATAAGATCTG
46154769 TAATCTTCAA
Statistics
Matches: 310, Mismatches: 24, Indels: 28
0.86 0.07 0.08
Matches are distributed among these distances:
163 1 0.00
164 30 0.10
165 78 0.25
166 3 0.01
167 8 0.03
168 175 0.56
169 2 0.01
170 10 0.03
171 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (169 bp):
GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
TCGTCTGCTCCACTACTGCTTAGGAGATAAGACTGGTTTCTTTCTCTGCTCCACTACTGCTTAGG
GAGATAAGACTTGATGTGATCTGCTCCACTACTGCTTAG
Found at i:46154629 original size:124 final size:126
Alignment explanation
Indices: 46154275--46154764 Score: 671
Period size: 124 Copynumber: 3.9 Consensus size: 126
46154265 GTTTCCTTCG
* * * * *
46154275 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGTTCCATTACTGCTTATG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC--GTTGCTGTCGTCTGCTCCACTACTGCTTAGG
46154340 GAGATAAGA-CTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
64 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
* *
46154402 TCTGCTCCACTACTGCTTAGGGAGATAAGAT--TTGGTTGT-GATCTGCTCCACTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCGTT-GCTGTCG-TCTGCTCCACTACTGCTTAGG
* *
46154464 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACCGCTTAGGAAGATAAGACTTGATGTGT
64 GAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
*
46154527 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C-TTGATGT-GATCTGCTCCACTACTGCTTAGGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCGTTGCTGTCG-TCTGCTCCACTACTGCTTAGGG
* *
46154589 AGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
65 AGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
* *
46154651 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC--GTTGCTGTCGTCTGCTCCACTACTGCTTAGG
** *
46154716 GAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTTAGGGAGATAAGA
64 GAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
46154765 TCTGTAATCT
Statistics
Matches: 331, Mismatches: 22, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
123 4 0.01
124 176 0.53
125 84 0.25
127 32 0.10
128 34 0.10
129 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (126 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCGTTGCTGTCGTCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
Found at i:46154765 original size:84 final size:84
Alignment explanation
Indices: 46154252--46154768 Score: 653
Period size: 84 Copynumber: 6.2 Consensus size: 84
46154242 GCAACTTCAA
* * ** *
46154252 GGAGATAGGAT-TGGTTTCCTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGATG
* * *
46154316 TCG-TCTGTTCCATTACTGCTTAT
62 T-GATCTGCTCCACTACTGCTTAG
*
46154339 GGAGATAAGA-CTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGTT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
46154403 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
* * * **
46154422 GGAGATAAGATTTGG--T-TGT-GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGGTTTCT
1 GGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGAT
* *
46154483 TTCG-TCTGCTCCACTACCGCTTAG
61 GT-GATCTGCTCCACTACTGCTTAG
* * * * *
46154507 GAAGATAAGA-CTTG-ATGTGT--TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
46154568 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
*
46154587 GGAGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
46154652 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
46154671 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
46154736 CTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAG
46154755 GGAGATAAGATCTG
1 GGAGATAAGATCTG
46154769 TAATCTTCAA
Statistics
Matches: 384, Mismatches: 30, Indels: 35
0.86 0.07 0.08
Matches are distributed among these distances:
79 1 0.00
80 33 0.09
81 34 0.09
82 6 0.02
83 32 0.08
84 190 0.49
85 33 0.09
86 5 0.01
87 50 0.13
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (84 bp):
GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
CTGCTCCACTACTGCTTAG
Found at i:46155035 original size:45 final size:46
Alignment explanation
Indices: 46154986--46155092 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 46
46154976 GATGCAGGAG
* *
46154986 GGCAAGATCTGCTATCTTTAG-TCTGCTCCACTGTTAGTACAAGAA
1 GGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
* * * *
46155031 GGCAAGA-CTGGCT-TC-TTCGATCTGCTTCGCCGTCAGTACAGGAA
1 GGCAAGATCT-GCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
*
46155075 GGTAAGATCTGCTATCTT
1 GGCAAGATCTGCTATCTT
46155093 CAACCAGCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
43 3 0.06
44 32 0.64
45 14 0.28
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (46 bp):
GGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
Found at i:46155276 original size:88 final size:88
Alignment explanation
Indices: 46155044--46155756 Score: 862
Period size: 88 Copynumber: 8.1 Consensus size: 88
46155034 AAGACTGGCT
* * * * * * * *
46155044 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAACCAGCTCTACTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
46155109 AACCGATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* * * * * *
46155131 TTTTCGATCTGCTTCGCTGTTAACGCAGGAATGCAAGATCTGCTATTTTTAACCAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
46155196 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * * * * **
46155219 TCTTCGACCTACTTCGCTGTCAATGCAAGAAGGCAATATCTGTTGTCTTCAACCAGCTCCACCCC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
46155284 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * **
46155307 TCTTCGATCTGCTTAGCTGTTAATGCAGGAAGGCAATATCTGCTGTCTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
46155372 ATCCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * * *
46155395 TCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACCAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
**
46155460 AATAGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* ***
46155483 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTACTGTCTTCAACCAGCTGTGCTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
46155548 ACCCGAGAGAGGCAAGGTTT-TG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * ** * * *
46155570 TTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATCTTTGACTAACTCCACTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
46155635 AACTGATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* *
46155657 TTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTTAACCAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
* * *
46155722 AACTGATG-GAGGCAAGGATCTGTT
66 AACCGA-GAGAGGCAAGG-TTTGTG
*
46155746 TCTTTGATCTG
1 TCTTCGATCTG
46155757 TTCTCTGGGG
Statistics
Matches: 536, Mismatches: 85, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
86 1 0.00
87 220 0.41
88 305 0.57
89 10 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
AACCGAGAGAGGCAAGGTTTGTG
Found at i:46155311 original size:43 final size:43
Alignment explanation
Indices: 46155181--46155487 Score: 115
Period size: 44 Copynumber: 7.0 Consensus size: 43
46155171 TGCTATTTTT
*
46155181 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * ** * * ** *
46155224 GACCTA-CTTCGCTGTCAATGCAAGA-AGGCAATATCTGTTGTCTTC
1 AACC-AGCTCCAC-CACAA-CCGAGAGAGGCAAGGTTTG-TGTCTTC
*
46155269 AACCAGCTCCACCCCAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * * *** * ** *
46155312 GATCTGCT-TAGCTGTTAA-TGCAG-GAAGGCAATATCTGCTGTCTTC
1 AACCAGCTCCA-C-CACAACCG-AGAG-AGGCAAGGTTTG-TGTCTTC
** * *
46155357 AACCAGCTCTGCTACATCCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * ** * * *
46155400 GACCTGCTTCACTGTCAA-TGCAG-GAAGGCAAGATCTGTTGTCTTC
1 AACCAGCTCCAC-CACAACCG-AGAG-AGGCAAGGTTTG-TGTCTTC
**
46155445 AACCAGCTCCACCACAATAGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
46155488 GATCTGCTTC
Statistics
Matches: 182, Mismatches: 62, Indels: 40
0.64 0.22 0.14
Matches are distributed among these distances:
42 1 0.01
43 49 0.27
44 80 0.44
45 51 0.28
46 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
Found at i:46156370 original size:108 final size:108
Alignment explanation
Indices: 46156181--46156376 Score: 277
Period size: 108 Copynumber: 1.8 Consensus size: 108
46156171 GAAAAATGCT
**
46156181 TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGATTAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
46156246 CAATCAGGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
* * * * **
46156289 TGAAAAAGATTATCACAATGGATAAGATGGAAA-TTTGTTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATAGACAAAAT-GAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAA
* *
46156353 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGACAGCAAATTTTGCT
46156377 AGAATACAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
108 72 0.95
109 4 0.05
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:46156440 original size:45 final size:43
Alignment explanation
Indices: 46156342--46156442 Score: 112
Period size: 45 Copynumber: 2.3 Consensus size: 43
46156332 GCAAAGCTCT
* * *
46156342 AAATGAACAAATTAATCAAGATAGCAAATTTTGCTAGAATACA
1 AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
* **
46156385 AAATGAGAATAAATTAATCAAGATGGCGTATTTTGTCAAAAATACAA
1 AAAT--GAATAAATTAATCAAGATAGCAAATTTTG-CAAAAATAC-A
46156432 AAATGAATAAA
1 AAATGAATAAA
46156443 ATGGAAATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.08
45 32 0.67
46 7 0.15
47 5 0.10
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.26
Consensus pattern (43 bp):
AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
Found at i:46156742 original size:18 final size:18
Alignment explanation
Indices: 46156714--46156769 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
46156704 GGCCTCTCCT
*
46156714 TTTTCTCTTTTCTTTTTTG
1 TTTT-TCTTTTCTTTTTTC
46156733 TTTTTCTTTTCTTTTTTC
1 TTTTTCTTTTCTTTTTTC
*
46156751 TTTTTGTTTAT-TTTTTTC
1 TTTTTCTTT-TCTTTTTTC
46156769 T
1 T
46156770 CAAGTGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 29 0.85
19 5 0.15
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTCTTTTTTC
Found at i:46156743 original size:25 final size:25
Alignment explanation
Indices: 46156714--46156770 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
46156704 GGCCTCTCCT
46156714 TTTTCTCTTTTCTTTTTTGTTT-TTC
1 TTTTCTCTTTTC-TTTTTGTTTATTC
* *
46156739 TTTTCTTTTTTCTTTTTGTTTATTT
1 TTTTCTCTTTTCTTTTTGTTTATTC
46156764 TTTTCTC
1 TTTTCTC
46156771 AAGTGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTCTCTTTTCTTTTTGTTTATTC
Found at i:46158575 original size:62 final size:62
Alignment explanation
Indices: 46158504--46158684 Score: 344
Period size: 62 Copynumber: 2.9 Consensus size: 62
46158494 AACTCAAAGC
*
46158504 ATTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACGCGT
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAACGCGT
46158566 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAACGCGT
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAACGCGT
*
46158628 ATTTTTGGATTTTAGGAAATTTATTGCATACAATGAAATGTAATGTTGATGCATGAA
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAA
46158685 TGCAAAAAAN
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 117 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.40
Consensus pattern (62 bp):
ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAACGCGT
Found at i:46173006 original size:15 final size:17
Alignment explanation
Indices: 46172981--46173012 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46172971 AGTAACAATA
46172981 ATTAGTACAGTA-ACAG
1 ATTAGTACAGTATACAG
46172997 ATTA-TACAGTATACAG
1 ATTAGTACAGTATACAG
46173013 GTCCTACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (17 bp):
ATTAGTACAGTATACAG
Found at i:46180522 original size:18 final size:20
Alignment explanation
Indices: 46180499--46180537 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
46180489 AGCCCATTAC
46180499 AGTAACA-ATAAT-CAGTAT
1 AGTAACAGATAATACAGTAT
*
46180517 AGTAACAGATTATACAGTAT
1 AGTAACAGATAATACAGTAT
46180537 A
1 A
46180538 CAGCTCCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (20 bp):
AGTAACAGATAATACAGTAT
Found at i:46192572 original size:14 final size:14
Alignment explanation
Indices: 46192553--46192592 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
46192543 TTGATTGACA
46192553 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
46192567 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
46192581 GGAAAATGTTTT
1 GTAAAATGTTTT
46192593 ACTTTTCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:46202471 original size:63 final size:63
Alignment explanation
Indices: 46202396--46202535 Score: 253
Period size: 63 Copynumber: 2.2 Consensus size: 63
46202386 AGTAAAGATA
** *
46202396 AAAACTCAAGAGAAAACTGTGTTGTAAGATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
46202459 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
46202522 AAAACTCAAGAGAA
1 AAAACTCAAGAGAA
46202536 GATGCACAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (63 bp):
AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
Found at i:46210561 original size:668 final size:660
Alignment explanation
Indices: 46209061--46210610 Score: 1760
Period size: 670 Copynumber: 2.3 Consensus size: 660
46209051 ATGCACTATA
* * * * *
46209061 ATATTAAAAAATATATAAAAATATTAAAATGATGATTTAGTTTAATGGTAAATTTAATATTTTAC
1 ATATTAAAAAATGTATAAAAA-ATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTAC
* * * * * *
46209126 TAATTCAATTGGCACGTGTTTAAATCTCATTATATACATATTTTTGTTGGTTTTTGTTAAAATAA
65 TAATCCAATT-GCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATAA
* * * * * * * *
46209191 AAATACTAAAATACTCTCAAATAATATGATTCACTTTAAATACAGAAGGACATTTCCATAATTCC
129 AAAGACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCTATAATTTC
* *
46209256 CTAACCAAGTTGGTACTTGGTTAACCCGTGACACCAACTTATTCAAAGATTTGACTCATTTTAAA
194 CTAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTAAA
* * * * * * * *
46209321 AATGAAAAGACATTTCTATAATTTTCTAACCCAATTGGTACCCAGTTAACCTGTGGCACCAATTT
259 AACGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTGACACCAACTA
* * ** * *
46209386 AGTCAGAGGTTTTATTAATAGTATAAATATACAACTAATGGGGATAATAATTTGTGCATGTTAAA
324 AGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAAA
* *
46209451 ATAAATATGTATAAATATATCAAAATGAAGCTTTAGTTAATTGGTAAATTTAAGATTTTACTAGT
389 ATAAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAGT
* * *
46209516 CCAATTGGCTCGGGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAGATATTAAAAC
454 CCAATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTAAAAC
** **
46209581 ATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTTTTAATTTTTTAACTGAGTTG
519 ATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATTTTTTAACCAAGTTG
* *
46209646 GTGATCCAATTGAAGGTGACATCAAATCAATAAAACACTTAATAAATAGTATAGATATACAACTA
584 GTGAACCAATTGAAGGTGACATC--A-C-----AACACTTAATAAATAGCATAGATATACAACTA
* *
46209711 CTGGAGATAATAAATTGTGC
641 CTAGACATAATAAATTGTGC
* * * **** * **
46209731 ATATTAAAAAATGTATTAAAAAATCAAAATAATGTTTTGGCTGAACAACAAATTTTAGGTTTTAC
1 ATATTAAAAAATGTA-TAAAAAATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTAC
* *
46209796 TAATCCAATTGACACGAGTTTAAATCCCTTCATATGCATATTTTTCTT-AGTTTTTGTTAAAATA
65 TAATCCAATTG-CACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGA-TTTTTGTTAAAATA
* *
46209860 AAAAGACTAAAATATCCTCAAATCG-TGTGACTCATTTTAAATACGGAAGGACATTTCTATAATT
128 AAAAGACTAAAATACCCTCAAAT-GATATGACTCATTTTAAATACGGAAGGACATTTCTATAATT
* * **
46209924 TCCTAATCGAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTTTA
192 TCCTAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTA
* * **
46209989 AATACGAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACCTGTGACACACCA
257 AAAACGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTG--ACACCA
* * * * *
46210054 ACTAAGTTAGGGGTTTTATTAATAATATAGATATCCAGCTAATAGAAATAATAACTTGTGCATAT
320 ACTAAGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATAT
* *
46210119 TAAAATAAA-ATTGTATAAATACATCAAAATGAAG-TTTTGATTGAGTGGTAAATTTAAGA-TTT
385 TAAAATAAATA-TGTATAAATACATCAAAATGAAGCTTTAG-TTAAGTGGTAAATTTAAGATTTT
* * * *
46210181 ACTAGTCCAGTTGACTTGAGTTTAAATCCAACCATTTGCATATTTTAAATGGTTTTTATTAAAAT
448 ACTAGTCCAATTGACTCGAGTTTAAATACAACCATATGCATATTTT-AA-------TATTAAAAT
* * ** *** * *
46210246 GAAAATATTAATATATTCACAAATATTATAACTTATTTTAATTATGGAAGGGCCTTTTCGTAA-T
505 GAAAATATTAAAACATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATT
** **
46210310 TTTTAACCAAGTTGGT-AACACGGTTGGGGGTGACA-C-C-A-ACTTAATAAATAGCATAGACAT
570 TTTTAACCAAGTTGGTGAAC-CAATTGAAGGTGACATCACAACACTTAATAAATAGCATAG--AT
**
46210370 ATACAACTGGTAGACATAATAAATTGTGC
632 ATACAACTACTAGACATAATAAATTGTGC
* *
46210399 ATATTAAAAAATGTATAAAAAACATCAAAATAATGCTTTAGTTGAGTGGTAAA-TTAAAATTTTA
1 ATATTAAAAAATGTAT-AAAAA-ATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTA
* *
46210463 TTTATCCAATTAGCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATA
64 CTAATCCAATT-GCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATA
* * *
46210528 AAAA-ACCTAAAATGCCCTCCAATGATATGACTCATTTTAAATATGGAAGGACATTT-TAATAAT
128 AAAAGA-CTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCT-ATAAT
*
46210591 TTCCTAACCAAGATGGTACC
191 TTCCTAACCAAGTTGGTACC
46210611 AAAGTTAGCC
Statistics
Matches: 736, Mismatches: 118, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
666 17 0.02
667 5 0.01
668 181 0.25
669 25 0.03
670 257 0.35
671 54 0.07
672 107 0.15
673 1 0.00
677 3 0.00
678 26 0.04
679 60 0.08
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (660 bp):
ATATTAAAAAATGTATAAAAAATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTACT
AATCCAATTGCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATAAAA
AGACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCTATAATTTCCT
AACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTAAAAA
CGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTGACACCAACTAAG
TCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAAAAT
AAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAGTCC
AATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTAAAACAT
TCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATTTTTTAACCAAGTTGGT
GAACCAATTGAAGGTGACATCACAACACTTAATAAATAGCATAGATATACAACTACTAGACATAA
TAAATTGTGC
Found at i:46218758 original size:58 final size:60
Alignment explanation
Indices: 46218625--46218758 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 60
46218615 TGATTATCTT
* * *
46218625 AATATTAAATTTAATTTAATATTTATCTTATAGATAAAAATTCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAAAATTATATTAATTTAATA-ATTA
*
46218686 AATATTAAATTTAATCTAATATTTAT-TT-T-GA-AAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAA-AATTATATTAATTTAATAATTA
*
46218742 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
46218759 TATAGTTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
56 5 0.08
57 4 0.06
58 28 0.43
59 1 0.02
60 2 0.03
61 25 0.38
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTATAGATAAAAATTATATTAATTTAATAATTA
Found at i:46219177 original size:12 final size:12
Alignment explanation
Indices: 46219160--46219197 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
46219150 GCCTAGATAA
46219160 AAAATAAAACAC
1 AAAATAAAACAC
46219172 AAAAT-AAAC-C
1 AAAATAAAACAC
*
46219182 AAAATAAAATAC
1 AAAATAAAACAC
46219194 AAAA
1 AAAA
46219198 GTCCAAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 6 0.26
11 7 0.30
12 10 0.43
ACGTcount: A:0.76, C:0.13, G:0.00, T:0.11
Consensus pattern (12 bp):
AAAATAAAACAC
Found at i:46219241 original size:12 final size:12
Alignment explanation
Indices: 46219200--46219243 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
46219190 ATACAAAAGT
46219200 CCAAATACCAAGC
1 CCAAATA-CAAGC
*
46219213 CCAAACTTACAAAC
1 CCAAA--TACAAGC
46219227 CCAAATACAAGC
1 CCAAATACAAGC
46219239 CCAAA
1 CCAAA
46219244 AAATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.41
13 5 0.19
14 9 0.33
15 2 0.07
ACGTcount: A:0.50, C:0.36, G:0.05, T:0.09
Consensus pattern (12 bp):
CCAAATACAAGC
Found at i:46219347 original size:4 final size:4
Alignment explanation
Indices: 46219338--46219450 Score: 54
Period size: 4 Copynumber: 27.8 Consensus size: 4
46219328 TTTTCACTTG
* ** * * *
46219338 TTTA TTTA TTCA -TTA TTCC TTTTA TTTTA TTCA TTCA TTTA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA TTTA
* * *
46219387 CTTA TTTA TATA -TTA TTTA TTTA TTTA -TTA TTTTAA TCCTTC TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTT-A T--TTA TTTA
*
46219432 GTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
46219451 TTTGATACTT
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
3 9 0.11
4 60 0.72
5 10 0.12
6 2 0.02
7 2 0.02
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:46219386 original size:25 final size:25
Alignment explanation
Indices: 46219338--46219386 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
46219328 TTTTCACTTG
* *
46219338 TTTATTTATTCATTATTCCTTTTAT
1 TTTATTCATTCATTATTCCATTTAT
46219363 TTTATTCATTCATTTATT-CATTTA
1 TTTATTCATTCA-TTATTCCATTTA
46219387 CTTATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTATTCATTCATTATTCCATTTAT
Found at i:46219408 original size:15 final size:15
Alignment explanation
Indices: 46219388--46219419 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
46219378 ATTCATTTAC
46219388 TTATTTATATATTAT
1 TTATTTATATATTAT
*
46219403 TTATTTATTTATTAT
1 TTATTTATATATTAT
46219418 TT
1 TT
46219420 TAATCCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTATATATTAT
Found at i:46222661 original size:11 final size:11
Alignment explanation
Indices: 46222645--46222683 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
46222635 GAAAGAGAGG
46222645 TTGATTTTTGC
1 TTGATTTTTGC
*
46222656 TTGATTTTAGC
1 TTGATTTTTGC
* *
46222667 TTAATTCTTGC
1 TTGATTTTTGC
46222678 TTGATT
1 TTGATT
46222684 AAAGGAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.59
Consensus pattern (11 bp):
TTGATTTTTGC
Found at i:46224763 original size:20 final size:21
Alignment explanation
Indices: 46224726--46224768 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
46224716 AATTCTAACT
*
46224726 AAAATGTCCTAAAATAC-AGC
1 AAAATGTACTAAAATACAAGC
* *
46224746 AAAATGTACTTAAGTACAAGC
1 AAAATGTACTAAAATACAAGC
46224767 AA
1 AA
46224769 TTAGCAAGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (21 bp):
AAAATGTACTAAAATACAAGC
Found at i:46227326 original size:41 final size:40
Alignment explanation
Indices: 46227253--46227439 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 40
46227243 ACTCAATGTT
* * * **
46227253 TCGCACACTAAATGTCATCGCATAGCCGAAGCTAT-TATAA
1 TCGCACACTAAGTGCCAT-ACATAGCCGAAGCTATCTCCAA
* * *
46227293 TCCCGCACACTAAGTGCCTTACATAGCCAAAGCTATCT-CAGTC
1 T--CGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCA--A
* * *
46227336 TCACACACTAAGTGCCATATATAGCTGAAGCTAT-TCCCAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCT-CCAA
* *
46227376 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCAA
* *
46227416 TCGCACACTAAGTGCTAAACATAG
1 TCGCACACTAAGTGCCATACATAG
46227440 TCGATTAATC
Statistics
Matches: 119, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
40 57 0.48
41 44 0.37
42 17 0.14
43 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCAA
Found at i:46232853 original size:40 final size:40
Alignment explanation
Indices: 46232720--46232854 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
46232710 TATTATAATC
* * *
46232720 TTGCACACTAAGTGCCTTACATAGCTGAAGCTATC-CCAG
1 TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
* *
46232759 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATTTCCAG
1 T-T-GCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
** * * *
46232801 TCACACATTAAGTGCCATAAATAGCCGAAGCTATCTCGAA
1 TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
46232841 TTGCACACTAAGTG
1 TTGCACACTAAGTG
46232855 TTAAACATAG
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 44 0.56
41 29 0.37
42 5 0.06
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (40 bp):
TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
Found at i:46233396 original size:17 final size:16
Alignment explanation
Indices: 46233370--46233408 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
46233360 AACAAATATC
*
46233370 CATTTTAAATCATCAAA
1 CATTTAAAATC-TCAAA
*
46233387 CATTTAAAATCTTAAA
1 CATTTAAAATCTCAAA
46233403 CATTTA
1 CATTTA
46233409 TCAATGGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (16 bp):
CATTTAAAATCTCAAA
Found at i:46239608 original size:14 final size:14
Alignment explanation
Indices: 46239576--46239605 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
46239566 ATTTCAGTAG
46239576 GTTAATTTAAGTTA
1 GTTAATTTAAGTTA
46239590 GTTAATTTAA-TTA
1 GTTAATTTAAGTTA
46239603 GTT
1 GTT
46239606 TAAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (14 bp):
GTTAATTTAAGTTA
Found at i:46246691 original size:40 final size:40
Alignment explanation
Indices: 46246579--46246694 Score: 162
Period size: 39 Copynumber: 2.9 Consensus size: 40
46246569 ATACTATTTG
* * *
46246579 ATTCAGAGTTACCGAAGTATAAACAGGGGCACGAATGTGC
1 ATTCAGAGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * *
46246619 ATTCA-AGGTATCGAAGTACAAATAGGAGCACGTATGTGC
1 ATTCAGAGGTACCGAAGTACAAACAGGGGCACGTATGTGC
*
46246658 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATG
1 ATTCAGAGGTACCGAAGTACAAACAGGGGCACGTATG
46246695 CAATAATTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 33 0.51
40 32 0.49
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (40 bp):
ATTCAGAGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:46257046 original size:50 final size:50
Alignment explanation
Indices: 46256875--46257052 Score: 230
Period size: 50 Copynumber: 3.6 Consensus size: 50
46256865 CATTTGGGTA
* * * * *
46256875 AAGAGATCACATGTAAGACCATGTCCGGGACATGGCATTGGCAGCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * *
46256925 AAGAGGTCCCATGTAAGACTACATATAGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
46256975 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* **
46257025 GAGAGGTCCCCCGTAAGACCATGTCTGG
1 AAGAGGTCCCATGTAAGACCATGTCTGG
46257053 ANNNNNNNNN
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 108 1.00
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:46259016 original size:12 final size:12
Alignment explanation
Indices: 46258999--46259028 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46258989 TCAGGCTATT
46258999 ACACGGCCTAGC
1 ACACGGCCTAGC
*
46259011 ACACGGCCTGGC
1 ACACGGCCTAGC
46259023 ACACGG
1 ACACGG
46259029 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:46260029 original size:9 final size:9
Alignment explanation
Indices: 46260015--46260041 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
46260005 TCACCGACAG
46260015 AATGTGTCA
1 AATGTGTCA
46260024 AATGTGTCA
1 AATGTGTCA
46260033 AATGTGTCA
1 AATGTGTCA
46260042 TATCTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (9 bp):
AATGTGTCA
Found at i:46266275 original size:30 final size:30
Alignment explanation
Indices: 46266241--46266300 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
46266231 ACTTATTTTA
*
46266241 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
*
46266271 TTGTTAAATTTGTTATTATTTTAGAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
46266301 ATGCTTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.55
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGGCAT
Found at i:46274782 original size:34 final size:34
Alignment explanation
Indices: 46274740--46274817 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 34
46274730 GTAGGTGCAT
* *
46274740 ATATAATATTAATATGTGTGCATGGTTTTGTTAC
1 ATATAATATAAATATGGGTGCATGGTTTTGTTAC
* *
46274774 ATATAATATAAATATGGGTGTATGGTTTTGTTAT
1 ATATAATATAAATATGGGTGCATGGTTTTGTTAC
46274808 ATATAATATA
1 ATATAATATA
46274818 TATGCGTGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.46
Consensus pattern (34 bp):
ATATAATATAAATATGGGTGCATGGTTTTGTTAC
Found at i:46274830 original size:29 final size:31
Alignment explanation
Indices: 46274738--46274852 Score: 99
Period size: 34 Copynumber: 3.5 Consensus size: 31
46274728 TGGTAGGTGC
* *
46274738 ATATATAATATTAATATGTGTGCATGGTTTTGTT
1 ATATATAATA-T-ATATGCGTGTA-GGTTTTGTT
* *
46274772 ACATATAATATAAATATGGGTGTATGGTTTTGTT
1 ATATATAATAT--ATATGCGTGTA-GGTTTTGTT
46274806 ATATATAATATATATGCGTG-A-GTTTCGTGTT
1 ATATATAATATATATGCGTGTAGGTTT--TGTT
*
46274837 ATATGTAATATATATG
1 ATATATAATATATATG
46274853 TATATGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.06
31 20 0.28
32 8 0.11
33 1 0.01
34 39 0.54
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.46
Consensus pattern (31 bp):
ATATATAATATATATGCGTGTAGGTTTTGTT
Found at i:46275150 original size:36 final size:36
Alignment explanation
Indices: 46275091--46275173 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
46275081 ATTGTGAATC
* * *
46275091 GTGTTAACTTGGCGAATTATATTATTAT-AGCGAACT
1 GTGTTAATTTGGCGAATTATATTAATATGA-CAAACT
* * *
46275127 GTGTTAATTTGGTGATTTGTATTAATATGACAAACT
1 GTGTTAATTTGGCGAATTATATTAATATGACAAACT
*
46275163 GTATTAATTTG
1 GTGTTAATTTG
46275174 CCAAACTGCG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 38 0.97
37 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (36 bp):
GTGTTAATTTGGCGAATTATATTAATATGACAAACT
Found at i:46275165 original size:18 final size:18
Alignment explanation
Indices: 46275144--46275181 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
46275134 TTTGGTGATT
46275144 TGTATTAATATGACAAAC
1 TGTATTAATATGACAAAC
* *
46275162 TGTATTAATTTGCCAAAC
1 TGTATTAATATGACAAAC
46275180 TG
1 TG
46275182 CGGATTGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
TGTATTAATATGACAAAC
Found at i:46275821 original size:17 final size:16
Alignment explanation
Indices: 46275801--46275848 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
46275791 TATGATGGAG
46275801 TATGAACTATTATTCAA
1 TATGAACTATTATTC-A
* *
46275818 TATGGACTAATATTTCA
1 TATGAACTATTA-TTCA
*
46275835 TATAAACTATTATT
1 TATGAACTATTATT
46275849 TTGCATGAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 2 0.08
17 20 0.80
18 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (16 bp):
TATGAACTATTATTCA
Found at i:46291262 original size:14 final size:14
Alignment explanation
Indices: 46291245--46291271 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46291235 ACAAATTTGG
46291245 CTATACTAAAATGC
1 CTATACTAAAATGC
46291259 CTATACTAAAATG
1 CTATACTAAAATG
46291272 AGTGTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (14 bp):
CTATACTAAAATGC
Found at i:46307124 original size:13 final size:13
Alignment explanation
Indices: 46307106--46307130 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46307096 ATTTTTTAGG
46307106 TCATTTTCATTTT
1 TCATTTTCATTTT
46307119 TCATTTTCATTT
1 TCATTTTCATTT
46307131 AGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:46316615 original size:24 final size:24
Alignment explanation
Indices: 46316583--46316628 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
46316573 CTAATTAAAT
* *
46316583 CTTATAAATAATTAATATTTATTA
1 CTTAAAAATAATTAAAATTTATTA
*
46316607 CTTAAAAATATTTAAAATTTAT
1 CTTAAAAATAATTAAAATTTAT
46316629 ATTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
CTTAAAAATAATTAAAATTTATTA
Found at i:46316631 original size:30 final size:30
Alignment explanation
Indices: 46316592--46316648 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
46316582 TCTTATAAAT
46316592 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
46316622 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
46316649 AACAATAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:46316970 original size:21 final size:21
Alignment explanation
Indices: 46316946--46316988 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
46316936 TTCAATATCC
*
46316946 TTAAT-AAAGAAATAAAACAAA
1 TTAATCAAAG-AATAAAAAAAA
*
46316967 TTAATCATAGAATAAAAAAAA
1 TTAATCAAAGAATAAAAAAAA
46316988 T
1 T
46316989 CTCAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
TTAATCAAAGAATAAAAAAAA
Found at i:46327698 original size:14 final size:14
Alignment explanation
Indices: 46327679--46327706 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
46327669 AAAGTGGATT
46327679 CAAATGTGGTGATA
1 CAAATGTGGTGATA
46327693 CAAATGTGGTGATA
1 CAAATGTGGTGATA
46327707 GAGGTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
CAAATGTGGTGATA
Found at i:46340387 original size:14 final size:15
Alignment explanation
Indices: 46340363--46340391 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
46340353 TGGTTGAATG
46340363 GAAATTTGGTCATTT
1 GAAATTTGGTCATTT
46340378 GAAA-TTGGTCATTT
1 GAAATTTGGTCATTT
46340392 TATGCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (15 bp):
GAAATTTGGTCATTT
Found at i:46349903 original size:26 final size:27
Alignment explanation
Indices: 46349874--46349933 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
46349864 AATTTTCTCG
46349874 AAATTTTATCGAG-GGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
46349900 AAATTTTATCGAGTGGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
46349927 AAATTTT
1 AAATTTT
46349934 GCTAGAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (27 bp):
AAATTTTATCGAGTGGTAAAATCGTCA
Found at i:46351490 original size:11 final size:12
Alignment explanation
Indices: 46351465--46351490 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46351455 TGTAATGGAC
46351465 TTTTTAAGGATT
1 TTTTTAAGGATT
46351477 TTTTTAAGGATT
1 TTTTTAAGGATT
46351489 TT
1 TT
46351491 ATATCTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
TTTTTAAGGATT
Found at i:46357670 original size:12 final size:12
Alignment explanation
Indices: 46357653--46357683 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
46357643 AAAGAGGTTT
46357653 CCTTTTGTCTCA
1 CCTTTTGTCTCA
46357665 CCTTTTGTCTCA
1 CCTTTTGTCTCA
46357677 CACTTTT
1 C-CTTTT
46357684 TCCCTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.10, C:0.32, G:0.06, T:0.52
Consensus pattern (12 bp):
CCTTTTGTCTCA
Found at i:46360166 original size:25 final size:25
Alignment explanation
Indices: 46360114--46360234 Score: 86
Period size: 25 Copynumber: 4.8 Consensus size: 25
46360104 CTCTCTCTTT
*
46360114 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGTG
*
46360139 AGCCATGTAACAGGAAGCTCAT-TCG
1 AGCCATATAACAGGAAGCTCATGT-G
** * * **
46360164 AGCTGTATAACAAGAAGATCATAAG
1 AGCCATATAACAGGAAGCTCATGTG
**
46360189 AGCCATA-ATTAGGAAGCTCATGAATG
1 AGCCATATAACAGGAAGCTCATG--TG
*
46360215 AGCC-TTTAATCAGGAAGCTC
1 AGCCATATAA-CAGGAAGCTC
46360235 CAAAGAGCCA
Statistics
Matches: 71, Mismatches: 19, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
24 11 0.15
25 45 0.63
26 6 0.08
27 9 0.13
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGTG
Found at i:46364566 original size:19 final size:20
Alignment explanation
Indices: 46364524--46364566 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
46364514 GGGTATTTCA
46364524 AAAACTATGAGGGAATACCC
1 AAAACTATGAGGGAATACCC
* *
46364544 AAAATTATGATGGAATA-CC
1 AAAACTATGAGGGAATACCC
46364563 AAAA
1 AAAA
46364567 GTCACGAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (20 bp):
AAAACTATGAGGGAATACCC
Found at i:46364643 original size:20 final size:20
Alignment explanation
Indices: 46364599--46364643 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
46364589 AAGAAGTACT
* * *
46364599 AAAAATTATAAGGGAATATA
1 AAAAATTACAACGGAATAAA
46364619 AAAAATTACAACGGAATAAA
1 AAAAATTACAACGGAATAAA
46364639 AAAAA
1 AAAAA
46364644 CTTTTTAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAAATTACAACGGAATAAA
Found at i:46364709 original size:20 final size:20
Alignment explanation
Indices: 46364666--46364710 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
46364656 AAAATGTAAT
* *
46364666 ATTTTTTATTTCAAAAATTT
1 ATTTTTTATGTCAAAAATTA
46364686 ATTTTTTATGTCAAAAGA-TA
1 ATTTTTTATGTCAAAA-ATTA
46364706 ATTTT
1 ATTTT
46364711 AGAAACATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTTTTTATGTCAAAAATTA
Found at i:46371371 original size:124 final size:124
Alignment explanation
Indices: 46371151--46371385 Score: 416
Period size: 124 Copynumber: 1.9 Consensus size: 124
46371141 CTTCTATGGT
* *
46371151 AACATCAAATTCTCACTTTAACGCTTACTTATGAACATTAAATATTTTTATCGATTATGTTATTT
1 AACATCAAATTCTCACTCTAACGCTTACTTATGAACATTAAATATTTTTACCGATTATGTTATTT
* *
46371216 TGCTTGGTTTCACTTAAAATTGACTAGCAAAAGTTGTTTGACATAACTCTAGCTTCATC
66 TGCTCGGTTTCACTTAAAATTGACTAGCAAAAGTTGTTTAACATAACTCTAGCTTCATC
* *
46371275 AACATCAGATTCTCACTCTAACTCTTACTTATGAACATTAAATATTTTTACCGATTATGTTATTT
1 AACATCAAATTCTCACTCTAACGCTTACTTATGAACATTAAATATTTTTACCGATTATGTTATTT
46371340 TGCTCGGTTTCACTTAAAATTGACTAGCAAAAGTTGTTTAACATAA
66 TGCTCGGTTTCACTTAAAATTGACTAGCAAAAGTTGTTTAACATAA
46371386 ATTATAGCTT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 105 1.00
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.40
Consensus pattern (124 bp):
AACATCAAATTCTCACTCTAACGCTTACTTATGAACATTAAATATTTTTACCGATTATGTTATTT
TGCTCGGTTTCACTTAAAATTGACTAGCAAAAGTTGTTTAACATAACTCTAGCTTCATC
Found at i:46375835 original size:40 final size:40
Alignment explanation
Indices: 46375791--46375873 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
46375781 GTAACGTGAG
46375791 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
46375831 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
46375871 GTT
1 GTT
46375874 AAATTGTCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (40 bp):
GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
Found at i:46376906 original size:12 final size:12
Alignment explanation
Indices: 46376884--46376914 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
46376874 CATAAAAGAG
46376884 ACACTAACACAAA
1 ACAC-AACACAAA
46376897 ACACAACACAAA
1 ACACAACACAAA
46376909 ACACAA
1 ACACAA
46376915 ATGAGTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.65, C:0.32, G:0.00, T:0.03
Consensus pattern (12 bp):
ACACAACACAAA
Found at i:46386158 original size:7 final size:7
Alignment explanation
Indices: 46386146--46386210 Score: 53
Period size: 7 Copynumber: 9.1 Consensus size: 7
46386136 ACTAATTAAT
46386146 CTAAACC
1 CTAAACC
46386153 CTAAACCC
1 CTAAA-CC
*
46386161 CTAACCC
1 CTAAACC
46386168 CTAAACC
1 CTAAACC
*
46386175 TTAAACC
1 CTAAACC
*
46386182 C-CAACC
1 CTAAACC
46386188 CTTAAACC
1 C-TAAACC
*
46386196 AT-AACC
1 CTAAACC
46386202 CATAAACC
1 C-TAAACC
46386210 C
1 C
46386211 ATAATCTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
6 9 0.20
7 21 0.47
8 15 0.33
ACGTcount: A:0.40, C:0.45, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:46386193 original size:21 final size:22
Alignment explanation
Indices: 46386146--46386195 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
46386136 ACTAATTAAT
46386146 CTAAACCCTAAACCCCTAACCC
1 CTAAACCCTAAACCCCTAACCC
*
46386168 CTAAACCTTAAACCCC-AACCC
1 CTAAACCCTAAACCCCTAACCC
*
46386189 TTAAACC
1 CTAAACC
46386196 ATAACCCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (22 bp):
CTAAACCCTAAACCCCTAACCC
Found at i:46386268 original size:14 final size:14
Alignment explanation
Indices: 46386147--46386292 Score: 80
Period size: 14 Copynumber: 10.2 Consensus size: 14
46386137 CTAATTAATC
*
46386147 TAAACCCTAAACCCC
1 TAAACCCTAAA-CCA
* *
46386162 TAACCCCTAAACCT
1 TAAACCCTAAACCA
* * *
46386176 TAAACCCCAACCCT
1 TAAACCCTAAACCA
* *
46386190 TAAACCATAACCCA
1 TAAACCCTAAACCA
* *
46386204 TAAACCCATAATCTA
1 TAAACCC-TAAACCA
*
46386219 TAAACCTTAAA--A
1 TAAACCCTAAACCA
**
46386231 TAGTAACTCCTAAACTT
1 TA--AAC-CCTAAACCA
46386248 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
46386262 TATACCCTAAATCA
1 TAAACCCTAAACCA
* *
46386276 TAAATCCTAAACTA
1 TAAACCCTAAACCA
46386290 TAA
1 TAA
46386293 TGATAATTAA
Statistics
Matches: 102, Mismatches: 23, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
12 3 0.03
14 68 0.67
15 29 0.28
17 2 0.02
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:46386416 original size:14 final size:14
Alignment explanation
Indices: 46386399--46386428 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46386389 CTAAACCTTG
46386399 AATCATAAAACATA
1 AATCATAAAACATA
*
46386413 AATCATAAAACCTA
1 AATCATAAAACATA
46386427 AA
1 AA
46386429 CCCCTAACCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.17, G:0.00, T:0.20
Consensus pattern (14 bp):
AATCATAAAACATA
Found at i:46386481 original size:21 final size:22
Alignment explanation
Indices: 46386427--46386488 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
46386417 ATAAAACCTA
* *
46386427 AACCC-CTAACCCAT-AACCTCT
1 AACCCTCTAAACCATAAACC-CC
*
46386448 AACCCTCTAAACCTTAAACCCC
1 AACCCTCTAAACCATAAACCCC
46386470 AACCCT-TAAACCATAAACC
1 AACCCTCTAAACCATAAACC
46386489 ATAATCGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
21 17 0.49
22 14 0.40
23 4 0.11
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCTCTAAACCATAAACCCC
Found at i:46386690 original size:40 final size:40
Alignment explanation
Indices: 46386588--46386909 Score: 225
Period size: 40 Copynumber: 8.2 Consensus size: 40
46386578 ATTTTTTTGT
* * * *
46386588 GGCGTTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGT
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* * * *
46386628 GGC-ATTTTCAAAAAGCGTCGCTAATACTCGATCTATAAC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* * *
46386667 GGCGTTTTTTAAAAAGCACCGCTAATGCTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* * * *
46386707 GGCGTTTCTCAAAAAGTGCCACTACTGC-C-A-CTA-A--
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* *** * * ** * * *
46386741 AGC--TCAACATAAATGACG-CG-TTATGCTTAATTTTTTTTGC
1 GGCGTTTTTCA-AAAAG-CGCCGCTAATGCTCGA--TCTATAGC
* * * *
46386781 GGCGTTTTCCAAAAAGCGTCACTAATGCCCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* *
46386821 GGCGTTTTTAAAAAAGCGCCGCTAATGCCCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
* *
46386861 GGCGTTTTTCAAAAAGCGCCGTTAATGCTCGATCTATAGT
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
46386901 GGCGTTTTT
1 GGCGTTTTT
46386910 TATCCAAACG
Statistics
Matches: 212, Mismatches: 55, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
32 7 0.03
33 5 0.02
34 4 0.02
36 1 0.00
37 4 0.02
38 1 0.00
39 32 0.15
40 144 0.68
41 5 0.02
42 9 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGC
Found at i:46387963 original size:29 final size:29
Alignment explanation
Indices: 46387904--46387965 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
46387894 TGTACATTGG
**
46387904 GTTAATATATTAACTTGCTTCCTATGTAT
1 GTTAATATATTAACTTGCTTCCTATACAT
* *
46387933 GTTAATATATTTACTTTCTTCCTATACAT
1 GTTAATATATTAACTTGCTTCCTATACAT
46387962 GTTA
1 GTTA
46387966 TTAAATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.50
Consensus pattern (29 bp):
GTTAATATATTAACTTGCTTCCTATACAT
Found at i:46388243 original size:35 final size:35
Alignment explanation
Indices: 46388183--46388387 Score: 234
Period size: 36 Copynumber: 5.8 Consensus size: 35
46388173 AAAAAATTAC
* *
46388183 CTTAGACGTGTCTATCCCAACCTTTTTAAAGATGT
1 CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
* * * *
46388218 CTTAGACAAGGTCTATCCCAACTTTTTTAAGGTTGC
1 CTTAGACGA-GTCTATCCCAACCTTTTTAAAGTTGT
* *
46388254 CTTAGACGAGTCTATACCAACCTTTTTTAAAGGTTGC
1 CTTAGACGAGTCTATCCCAACC-TTTTTAAA-GTTGT
* * *
46388291 CTTAGACAAGGTTTATCCTAACC-TTTTAAAGGTTGT
1 CTTAGACGA-GTCTATCCCAACCTTTTTAAA-GTTGT
*
46388327 CTTAGACGAGTTTATCCCAACCTTTTTAAAGTTGT
1 CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
*
46388362 CTTAGATGAGTCTATCCCAA-CTTTTT
1 CTTAGACGAGTCTATCCCAACCTTTTT
46388388 GTAAGTGTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
34 6 0.04
35 53 0.36
36 64 0.44
37 13 0.09
38 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (35 bp):
CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
Found at i:46388331 original size:73 final size:71
Alignment explanation
Indices: 46388182--46388387 Score: 270
Period size: 73 Copynumber: 2.9 Consensus size: 71
46388172 AAAAAAATTA
* * * *
46388182 CCTTAGACGTGTCTATCCCAACCTTTTTAAAGATGTCTTAGACAAGGTCTATCCCAACTTTTTTA
1 CCTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCCAACCTTTTAA
46388247 AGGTTG
66 AGGTTG
* * * *
46388253 CCTTAGACGAGTCTATACCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTTTATCCTAACCTTTT
1 CCTTAGACGAGTCTATCCCAACC-TTTTTAAA-GTTGTCTTAGACAAGGTCTATCCCAACCTTTT
46388318 AAAGGTTG
64 AAAGGTTG
* * ** *
46388326 TCTTAGACGAGTTTATCCCAACCTTTTTAAAGTTGTCTTAGATGA-GTCTATCCCAACTTTTT
1 CCTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCCAACCTTTT
46388388 GTAAGTGTCA
Statistics
Matches: 116, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
70 14 0.12
71 32 0.28
72 16 0.14
73 54 0.47
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (71 bp):
CCTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCCAACCTTTTAA
AGGTTG
Found at i:46391997 original size:112 final size:112
Alignment explanation
Indices: 46391788--46392088 Score: 257
Period size: 112 Copynumber: 2.7 Consensus size: 112
46391778 TCAGCTTCAA
*
46391788 AGACATTAGTGGCGCTTTAAACAAAACGCCGTAAAAGTCAAGCATTAGCGGCGCTTTCACAAAAG
1 AGACATTAGTGGCGCTTTAAACAAAACGCCGCAAAAGTCAAGCATTAGCGGCGCTTTCACAAAAG
* * * *
46391853 TGCCGCAAAACTGATTAACAGACGGCGCCGTTTTGATTTAGTTTTGG
66 CGCCACAAAACTGATTAACAAACGACGCCGTTTTGATTTAGTTTTGG
* ** * * *
46391900 AGACATTAGTGGTG-TTTATAAGGAAACGCCGCAAAAGATCATGTATTAGCGGCGCTTTCAC-GA
1 AGACATTAGTGGCGCTTTA-AACAAAACGCCGCAAAAG-TCAAGCATTAGCGGCGCTTTCACAAA
* ** * * ** *
46391963 AGCGCCACAAAAGTTTTTACCAAACGACGTCGTTTTCTTGTTGAGTTTTAG
64 AGCGCCACAAAACTGATTAACAAACGACGCCGTTTTGAT-TT-AGTTTTGG
* * * ** * * ** * * *
46392014 ACACAATAGTGGCGATACAAAGAAATCGCCGCTGAAGTCAATCATTAGCGGCGCTTT-AGATGAA
1 AGACATTAGTGGCGCTTTAAACAAAACGCCGCAAAAGTCAAGCATTAGCGGCGCTTTCACA-AAA
46392078 GCGCCACAAAA
65 GCGCCACAAAA
46392089 AGTTTTAAGC
Statistics
Matches: 150, Mismatches: 32, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
111 4 0.03
112 58 0.39
113 40 0.27
114 46 0.31
115 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (112 bp):
AGACATTAGTGGCGCTTTAAACAAAACGCCGCAAAAGTCAAGCATTAGCGGCGCTTTCACAAAAG
CGCCACAAAACTGATTAACAAACGACGCCGTTTTGATTTAGTTTTGG
Found at i:46392165 original size:113 final size:112
Alignment explanation
Indices: 46391922--46392173 Score: 251
Period size: 113 Copynumber: 2.2 Consensus size: 112
46391912 TGTTTATAAG
* *
46391922 GAAACGCCGCAAAAGATC-ATGTATTAGCGGCGCTTTCACGAAGCGCCACAAAAGTTTTTACCAA
1 GAAACGCCGCAAAAG-TCAAT-CATTAGCGGCGCTTTCACGAAGCGCCACAAAAGTTTTAACCAA
*
46391986 ACGACGTCGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATACAAA
64 ACGACGTCGTTTTCTTGTTGAGTCTTAGACACAATAGTGGCGATACAAA
** * * *
46392035 GAAATCGCCGCTGAAGTCAATCATTAGCGGCGCTTTAGATGAAGCGCCACAAAAAGTTTTAAGCA
1 GAAA-CGCCGCAAAAGTCAATCATTAGCGGCGCTTT-CACGAAGCGCCAC-AAAAGTTTTAACCA
* * * ** * * * *
46392100 TACGCCGTCGTTTTC-TGTTGTG-CTTAGGGACATTAGTGGCGCTTCGCGAA
63 AACGACGTCGTTTTCTTGTTGAGTCTTAGACACAATAGTGGCG-AT-ACAAA
*
46392150 -AAACGCCGCAAAAGTCAAGCATTA
1 GAAACGCCGCAAAAGTCAATCATTA
46392174 TCGGTAATAG
Statistics
Matches: 113, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
113 53 0.47
114 32 0.28
115 28 0.25
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (112 bp):
GAAACGCCGCAAAAGTCAATCATTAGCGGCGCTTTCACGAAGCGCCACAAAAGTTTTAACCAAAC
GACGTCGTTTTCTTGTTGAGTCTTAGACACAATAGTGGCGATACAAA
Found at i:46392351 original size:208 final size:207
Alignment explanation
Indices: 46391983--46392648 Score: 1044
Period size: 208 Copynumber: 3.2 Consensus size: 207
46391973 AAGTTTTTAC
** *
46391983 CAAACGACGTCGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATACAAAGAAATCGCCGCTG
1 CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTGGC-ATTCAAAGAAATCGCCGCTG
* *
46392048 AAGTCAATCATTAGCGGCGCTTTAGATGAAGCGCCACAAAAAGTTTTAAGCATACGCCGTCGTTT
65 AAGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTCGTTT
46392113 TCTGTTGTGCTTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGG
130 TCTGTTGTGCTTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGG
46392178 TAATAGTTTTAGG
195 TAATAGTTTTAGG
* *
46392191 CAAACAACAACGTTTTCTTGTTAAGTTTTAGACACAATAGTGGCATTTCAAAGAAATCGCCGCTG
1 CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCA-TTCAAAGAAATCGCCGCTG
**
46392256 AAGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTTATTT
65 AAGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTCGTTT
* **
46392321 TCTGTTGTGTTTAGGGACATTAGTGGCGCTTCGCGAAAAACGTTGCAAAAGTCAAGCATTATCGG
130 TCTGTTGTGCTTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGG
46392386 TAATAGTTTTAGG
195 TAATAGTTTTAGG
** * *
46392399 CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGCCTCGAAGAAATCACCGCTG
1 CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTGGC-ATTCAAAGAAATCGCCGCTG
*
46392464 AAGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGTAAAAAGTTTTAAGCATACGCCGTCGTTT
65 AAGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTCGTTT
* * * * *
46392529 TCTGTTGTGCTTAAGGACATTAGTGGCGCTTCGCGAAAAATGCCGTAAAATTCAAGCATTATCGA
130 TCTGTTGTGCTTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGG
46392594 TAATAGTTTTAGG
195 TAATAGTTTTAGG
* * * * * * *
46392607 CAAATGACAGCGTTTTCTTTTTCAGATTTAGAGACATTAGTG
1 CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTG
46392649 TCTCATTGCC
Statistics
Matches: 420, Mismatches: 36, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
207 1 0.00
208 419 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (207 bp):
CAAACGACAACGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCATTCAAAGAAATCGCCGCTGA
AGTCAATCATTAGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTCGTTTT
CTGTTGTGCTTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGGT
AATAGTTTTAGG
Found at i:46396203 original size:9 final size:9
Alignment explanation
Indices: 46396176--46396223 Score: 64
Period size: 9 Copynumber: 5.6 Consensus size: 9
46396166 GTTCAAATTT
46396176 CATAACTTA
1 CATAACTTA
* *
46396185 CGTAATTTA
1 CATAACTTA
46396194 CATAACTTA
1 CATAACTTA
46396203 CATAA-TT-
1 CATAACTTA
46396210 CATAACTTA
1 CATAACTTA
46396219 CATAA
1 CATAA
46396224 TTTAATTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 5 0.15
8 4 0.12
9 24 0.73
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:46396215 original size:16 final size:16
Alignment explanation
Indices: 46396174--46396252 Score: 83
Period size: 16 Copynumber: 5.0 Consensus size: 16
46396164 AAGTTCAAAT
*
46396174 TTCATAACTTACGTAA
1 TTCATAACTTACATAA
46396190 TTTACATAACTTACATAA
1 -TT-CATAACTTACATAA
46396208 TTCATAACTTACATAA
1 TTCATAACTTACATAA
**
46396224 TT--TAA-TTTTATAA
1 TTCATAACTTACATAA
*
46396237 TACATAACTTACATAA
1 TTCATAACTTACATAA
46396253 CTTATTAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 7 0.13
14 3 0.06
15 3 0.06
16 22 0.42
17 4 0.08
18 13 0.25
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (16 bp):
TTCATAACTTACATAA
Found at i:46396485 original size:16 final size:16
Alignment explanation
Indices: 46396463--46396663 Score: 122
Period size: 16 Copynumber: 12.8 Consensus size: 16
46396453 NNNNNNNNNN
46396463 TAACTTACATAATACA
1 TAACTTACATAATACA
*
46396479 CAACTTACATAACTTACA
1 TAACTTACATAA--TACA
* *
46396497 TAACTTATATAAGAC-
1 TAACTTACATAATACA
*
46396512 -AACTTACATAAT--T
1 TAACTTACATAATACA
46396525 TAA--T---TAATACA
1 TAACTTACATAATACA
46396536 TAACTTACATAATACA
1 TAACTTACATAATACA
46396552 TAACTTACATAACCTACA
1 TAACTTACATAA--TACA
*
46396570 TAA--GACATAACTTACA
1 TAACTTACATAA--TACA
* *
46396586 TAAGTTTCATAATACA
1 TAACTTACATAATACA
* *
46396602 CAACTTACATAACTTGCA
1 TAACTTACATAA--TACA
46396620 TAA--TACATAACTTACA
1 TAACTTACATAA--TACA
* *
46396636 TAATTTACTTAATACA
1 TAACTTACATAATACA
46396652 TAACTTACATAA
1 TAACTTACATAA
46396664 ATATATGATG
Statistics
Matches: 146, Mismatches: 20, Indels: 38
0.72 0.10 0.19
Matches are distributed among these distances:
9 4 0.03
11 3 0.02
12 1 0.01
13 1 0.01
14 12 0.08
16 88 0.60
18 37 0.25
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (16 bp):
TAACTTACATAATACA
Found at i:46396492 original size:9 final size:9
Alignment explanation
Indices: 46396463--46396663 Score: 152
Period size: 9 Copynumber: 24.3 Consensus size: 9
46396453 NNNNNNNNNN
46396463 TAACTTACA
1 TAACTTACA
46396472 TAA--TACA
1 TAACTTACA
*
46396479 CAACTTACA
1 TAACTTACA
46396488 TAACTTACA
1 TAACTTACA
*
46396497 TAACTTATA
1 TAACTTACA
*
46396506 TAA--GAC-
1 TAACTTACA
46396512 -AACTTACA
1 TAACTTACA
*
46396520 TAATTTA-A
1 TAACTTACA
46396528 TTAA--TACA
1 -TAACTTACA
46396536 TAACTTACA
1 TAACTTACA
46396545 TAA--TACA
1 TAACTTACA
46396552 TAACTTACA
1 TAACTTACA
*
46396561 TAACCTACA
1 TAACTTACA
*
46396570 TAA--GACA
1 TAACTTACA
46396577 TAACTTACA
1 TAACTTACA
* *
46396586 TAAGTTTCA
1 TAACTTACA
46396595 TAA--TACA
1 TAACTTACA
*
46396602 CAACTTACA
1 TAACTTACA
*
46396611 TAACTTGCA
1 TAACTTACA
46396620 TAA--TACA
1 TAACTTACA
46396627 TAACTTACA
1 TAACTTACA
* *
46396636 TAATTTACT
1 TAACTTACA
46396645 TAA--TACA
1 TAACTTACA
46396652 TAACTTACA
1 TAACTTACA
46396661 TAA
1 TAA
46396664 ATATATGATG
Statistics
Matches: 152, Mismatches: 20, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
5 2 0.01
7 44 0.29
8 2 0.01
9 104 0.68
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (9 bp):
TAACTTACA
Found at i:46396560 original size:25 final size:25
Alignment explanation
Indices: 46396532--46396663 Score: 192
Period size: 25 Copynumber: 5.3 Consensus size: 25
46396522 ATTTAATTAA
46396532 TACATAACTTACATAATACATAACT
1 TACATAACTTACATAATACATAACT
* *
46396557 TACATAACCTACATAAGACATAACT
1 TACATAACTTACATAATACATAACT
* * *
46396582 TACATAAGTTTCATAATACACAACT
1 TACATAACTTACATAATACATAACT
*
46396607 TACATAACTTGCATAATACATAACT
1 TACATAACTTACATAATACATAACT
* *
46396632 TACATAATTTACTTAATACATAACT
1 TACATAACTTACATAATACATAACT
46396657 TACATAA
1 TACATAA
46396664 ATATATGATG
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 94 1.00
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (25 bp):
TACATAACTTACATAATACATAACT
Found at i:46399336 original size:43 final size:42
Alignment explanation
Indices: 46399275--46399516 Score: 331
Period size: 43 Copynumber: 5.7 Consensus size: 42
46399265 NNNNNCGGCG
46399275 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGG-AAAAGCGCC
46399318 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAGCGCC
46399360 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAATGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAA-GCGCC
* *
46399403 GCTAAAGAACATGATCTTTAGCGGTGTTTTTAGGAAAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGT-GGAAAAGCGCC
* * * * ***** **
46399446 GCTAAAGACCCTGACCTTTAGCGGCGTTTTTTTTGTAGCATC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAGCGCC
*
46399488 GCTAAAGAACATGACCTTTAGCGGCGTTT
1 GCTAAAGAACATGATCTTTAGCGGCGTTT
46399517 ATAAAAATAA
Statistics
Matches: 182, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
42 77 0.42
43 99 0.54
44 6 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (42 bp):
GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAGCGCC
Found at i:46399418 original size:85 final size:86
Alignment explanation
Indices: 46399275--46399474 Score: 339
Period size: 85 Copynumber: 2.3 Consensus size: 86
46399265 NNNNNCGGCG
46399275 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
46399340 GGCGTTTGT-GGAAAAGCGCC
66 GGCGTTTGTAGGAAAAGCGCC
*
46399360 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAATGCGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
* *
46399425 GGTGTTTTTAGGAAAAGCGCC
66 GGCGTTTGTAGGAAAAGCGCC
* * *
46399446 GCTAAAGACCCTGACCTTTAGCGGCGTTT
1 GCTAAAGAACATGATCTTTAGCGGCGTTT
46399475 TTTTTGTAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 71 0.66
86 37 0.34
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (86 bp):
GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
GGCGTTTGTAGGAAAAGCGCC
Found at i:46399491 original size:85 final size:85
Alignment explanation
Indices: 46399275--46399516 Score: 315
Period size: 85 Copynumber: 2.8 Consensus size: 85
46399265 NNNNNCGGCG
* * *
46399275 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCACCGCTAAAGAACATGATCTTTAGC
46399340 GGCGTTTGTGGAAAAGCGCC
66 GGCGTTTGTGGAAAAGCGCC
* *
46399360 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAATGCGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCACCGCTAAAGAACATGATCTTTAGC
* *
46399425 GGTGTTTTTAGGAAAAGCGCC
66 GGCGTTTGT-GGAAAAGCGCC
* * * ***** * *
46399446 GCTAAAGACCCTGACCTTTAGCGGCGTTTTTTTTGTA-GCATCGCTAAAGAACATGACCTTTAGC
1 GCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCACCGCTAAAGAACATGATCTTTAGC
46399510 GGCGTTT
66 GGCGTTT
46399517 ATAAAAATAA
Statistics
Matches: 140, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
85 101 0.72
86 39 0.28
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (85 bp):
GCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCACCGCTAAAGAACATGATCTTTAGC
GGCGTTTGTGGAAAAGCGCC
Found at i:46399507 original size:128 final size:128
Alignment explanation
Indices: 46399275--46399516 Score: 342
Period size: 128 Copynumber: 1.9 Consensus size: 128
46399265 NNNNNCGGCG
*
46399275 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGATCTTTAGC
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGACCTTTAGC
* *
46399340 GGCGTTTGTGGAAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAATGCGCC
66 GGCGTTTGTGGAAAAGCACCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCGCC
* * * *
46399403 GCTAAAGAACATGATCTTTAGCGGTGTTTTTAGG-AAAAGCGCCGCTAAAGACCCTGACCTTTAG
1 GCTAAAGAACATGATCTTTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAGAACATGACCTTTAG
* ***** *
46399467 CGGCGTTTTTTTTGTAGCATCGCTAAAGAACATGACCTTTAGCGGCGTTT
65 CGGCGTTTGTGGAAAAGCACCGCTAAAGAACATGACCTTTAGCGGCGTTT
46399517 ATAAAAATAA
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
128 97 0.98
129 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (128 bp):
GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACATGACCTTTAGC
GGCGTTTGTGGAAAAGCACCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAATGCGCC
Found at i:46401138 original size:21 final size:21
Alignment explanation
Indices: 46401111--46401195 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
46401101 CATTCTTACA
46401111 TCAT-GTTGTGGATAAACCAC
1 TCATCGTTGTGGATAAACCAC
* *
46401131 TCATTGTTGTGGATGAACCAC
1 TCATCGTTGTGGATAAACCAC
* *
46401152 TCATCGTTGTAGATAAACTAC
1 TCATCGTTGTGGATAAACCAC
* * *
46401173 TCATCGGTGTGGATGAACTAC
1 TCATCGTTGTGGATAAACCAC
46401194 TC
1 TC
46401196 GTAGTAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 4 0.07
21 52 0.93
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (21 bp):
TCATCGTTGTGGATAAACCAC
Found at i:46401175 original size:42 final size:41
Alignment explanation
Indices: 46401111--46401195 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 41
46401101 CATTCTTACA
* * *
46401111 TCATGTTGTGGATAAACCACTCATTGTTGTGGATGAACCAC
1 TCATGTTGTAGATAAACCACTCATCGGTGTGGATGAACCAC
* *
46401152 TCATCGTTGTAGATAAACTACTCATCGGTGTGGATGAACTAC
1 TCAT-GTTGTAGATAAACCACTCATCGGTGTGGATGAACCAC
46401194 TC
1 TC
46401196 GTAGTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
41 4 0.11
42 34 0.89
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (41 bp):
TCATGTTGTAGATAAACCACTCATCGGTGTGGATGAACCAC
Found at i:46401424 original size:34 final size:34
Alignment explanation
Indices: 46401348--46401424 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
46401338 TGCAATATGG
* * *
46401348 CATGTTTATAACAGATCAATACAGTAGCAATATA
1 CATGCTTATAACAGATCAATACAGTAACAAAATA
*
46401382 CATGCTTATAACAGATCAATAC-GATAACAAAATT
1 CATGCTTATAACAGATCAATACAG-TAACAAAATA
*
46401416 CATTCTTAT
1 CATGCTTAT
46401425 CATGTAACGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (34 bp):
CATGCTTATAACAGATCAATACAGTAACAAAATA
Found at i:46401721 original size:17 final size:17
Alignment explanation
Indices: 46401701--46401733 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
46401691 TGTGTAATAA
46401701 TAATAA-AAACATATGTT
1 TAATAATAAA-ATATGTT
46401718 TAATAATAAAATATGT
1 TAATAATAAAATATGT
46401734 ATTGCTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (17 bp):
TAATAATAAAATATGTT
Found at i:46401868 original size:51 final size:51
Alignment explanation
Indices: 46401795--46401906 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
46401785 CAAATAAAAG
*
46401795 AAAAGAAA-AAGGAATTGAAAAAGAAACAAAGAATAGAACGAAGCAGGGGA
1 AAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGA
*
46401845 AAAAGAAAGAATGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGA
1 AAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGA
46401896 AAAAGAAAGAA
1 AAAAGAAAGAA
46401907 AGAAAAAGAG
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
50 8 0.14
51 51 0.86
ACGTcount: A:0.64, C:0.05, G:0.24, T:0.06
Consensus pattern (51 bp):
AAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGA
Found at i:46401879 original size:19 final size:19
Alignment explanation
Indices: 46401843--46401879 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
46401833 CGAAGCAGGG
* *
46401843 GAAAAAGAAAGAATGAATT
1 GAAAAAGAAACAAAGAATT
46401862 GAAAAAGAAACAAAGAAT
1 GAAAAAGAAACAAAGAAT
46401880 AGAACGAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.19, T:0.11
Consensus pattern (19 bp):
GAAAAAGAAACAAAGAATT
Found at i:46402614 original size:24 final size:24
Alignment explanation
Indices: 46402587--46402633 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
46402577 ATTGAAATGG
46402587 ATTG-ATTTAATATGTGA-TGAATTT
1 ATTGAATTT-ATAT-TGATTGAATTT
46402611 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
46402634 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:46402911 original size:40 final size:40
Alignment explanation
Indices: 46402853--46402929 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
46402843 AGGTGCCAAT
* *
46402853 TTACTTCGATTTAGCCGATGAGACACTGGGTGTCAAATTA
1 TTACTTCGAATTAGCCGATGAGACACTGGGTGCCAAATTA
* * *
46402893 TTACTTTGAATTATCCGATGAGGCACTGGGTGCCAAA
1 TTACTTCGAATTAGCCGATGAGACACTGGGTGCCAAA
46402930 CTGGTGTGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (40 bp):
TTACTTCGAATTAGCCGATGAGACACTGGGTGCCAAATTA
Found at i:46405571 original size:185 final size:185
Alignment explanation
Indices: 46405344--46405708 Score: 703
Period size: 185 Copynumber: 2.0 Consensus size: 185
46405334 TCGAATTGAT
* *
46405344 TTGTGATATTAATTTAATCATTCATATTATATATAATATAGATAGGTAATATATTATATAAAATA
1 TTGTGATATTAATTTAATCATGCATACTATATATAATATAGATAGGTAATATATTATATAAAATA
*
46405409 TTAATATATTTTAATTTATATAAATATAATACACATTATAATTGATAGAATGAATATGTTGCGAA
66 TTAATATATTTTAATTTATATAAATATAATACACATTATAATTGATAGAATAAATATGTTGCGAA
46405474 TCTAATCAGGATTAGATGTCTTTAATTTGTTTTTAAAGAAGGGTTAAGAGGTGAG
131 TCTAATCAGGATTAGATGTCTTTAATTTGTTTTTAAAGAAGGGTTAAGAGGTGAG
46405529 TTGTGATATTAATTTAATCATGCATACTATATATAATATAGATAGGTAATATATTATATAAAATA
1 TTGTGATATTAATTTAATCATGCATACTATATATAATATAGATAGGTAATATATTATATAAAATA
46405594 TTAATATATTTTAATTTATATAAATATAATACACATTATAATTGATAGAATAAATATGTTGCGAA
66 TTAATATATTTTAATTTATATAAATATAATACACATTATAATTGATAGAATAAATATGTTGCGAA
46405659 TCTAATCAGGATTAGATGTCTTTAATTTGTTTTTAAAGAAGGGTTAAGAG
131 TCTAATCAGGATTAGATGTCTTTAATTTGTTTTTAAAGAAGGGTTAAGAG
46405709 TTTCTTGGAA
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 177 1.00
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (185 bp):
TTGTGATATTAATTTAATCATGCATACTATATATAATATAGATAGGTAATATATTATATAAAATA
TTAATATATTTTAATTTATATAAATATAATACACATTATAATTGATAGAATAAATATGTTGCGAA
TCTAATCAGGATTAGATGTCTTTAATTTGTTTTTAAAGAAGGGTTAAGAGGTGAG
Found at i:46411287 original size:24 final size:24
Alignment explanation
Indices: 46411260--46411311 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
46411250 TTAGTAAGTC
*
46411260 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
46411284 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
46411308 AAAT
1 AAAT
46411312 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:46413577 original size:18 final size:19
Alignment explanation
Indices: 46413554--46413591 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46413544 TGATATTAAA
46413554 ATAAA-TATAT-TATTATTT
1 ATAAATTATATAT-TTATTT
46413572 ATAAATTATATATTTATTT
1 ATAAATTATATATTTATTT
46413591 A
1 A
46413592 GAATCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 12 0.67
20 1 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATAAATTATATATTTATTT
Found at i:46413588 original size:19 final size:18
Alignment explanation
Indices: 46413554--46413591 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
46413544 TGATATTAAA
46413554 ATAAATATATTATTATTT
1 ATAAATATATTATTATTT
46413572 ATAAAT-TATATATTTATTT
1 ATAAATATAT-TA-TTATTT
46413591 A
1 A
46413592 GAATCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 8 0.44
19 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAAATATATTATTATTT
Found at i:46418340 original size:62 final size:62
Alignment explanation
Indices: 46418259--46418427 Score: 302
Period size: 62 Copynumber: 2.7 Consensus size: 62
46418249 CAACATTACA
* * *
46418259 ACATTACAACATTAAAACTTGGAACAAACTTTGTAAAATAAATTTTGTAATATAAATTAAAT
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTATGTAATATAAATTAAAT
*
46418321 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTATGTTATATAAATTAAAT
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTATGTAATATAAATTAAAT
46418383 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTA
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTA
46418428 GGTACATTTA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (62 bp):
ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTATGTAATATAAATTAAAT
Found at i:46425413 original size:14 final size:14
Alignment explanation
Indices: 46425394--46425424 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
46425384 CAAGCAATCC
46425394 AAAAACATAAGCCT
1 AAAAACATAAGCCT
46425408 AAAAACATAAGCCT
1 AAAAACATAAGCCT
46425422 AAA
1 AAA
46425425 CAAAGTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.19, G:0.06, T:0.13
Consensus pattern (14 bp):
AAAAACATAAGCCT
Found at i:46428926 original size:183 final size:183
Alignment explanation
Indices: 46428553--46429273 Score: 1325
Period size: 183 Copynumber: 3.9 Consensus size: 183
46428543 AATTTTTTCT
* * * *
46428553 TTTTCTTTTTTTCTCTTTTTTTGTTTTGTAGTTTGGCGGGGAGGAACTTTCTAGTTAGGTTTGAT
1 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
* ** *
46428618 TATAATGATTTTGAGAGCATATTGCAGAGAGAAGATTGTTGAGTTGGAATTTGGGTATGCAACTT
66 TATAATGATTTTGAGAGTATATTGCA-A-AG-AGA--GTCAAGTTGGAATTGGGGTATGCAACTT
46428683 TATTCATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
126 TATTCATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
46428741 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
1 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
46428806 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
66 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
46428871 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
131 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
46428924 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
1 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
46428989 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
66 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
46429054 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
131 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
46429107 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
1 TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
46429172 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
66 TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
46429237 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTAT
131 ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTAT
46429274 CAACTCCTTC
Statistics
Matches: 525, Mismatches: 8, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
183 433 0.82
185 3 0.01
186 2 0.00
187 1 0.00
188 86 0.16
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.42
Consensus pattern (183 bp):
TTTTCTTTTTTTCTCTTTTTTTGTTCTATGGTTTGGCGGGGAGGAACTTTCTAGTTGGGTTTGAT
TATAATGATTTTGAGAGTATATTGCAAAGAGAGTCAAGTTGGAATTGGGGTATGCAACTTTATTC
ATCTTTAAACAAACTATGGAAAGTGACATTAAAGTATAAAAGTTTTTTCAATA
Found at i:46433408 original size:12 final size:12
Alignment explanation
Indices: 46433391--46433415 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46433381 AGAAATGTTC
46433391 ACCAAATTTGAA
1 ACCAAATTTGAA
46433403 ACCAAATTTGAA
1 ACCAAATTTGAA
46433415 A
1 A
46433416 AGGTAACTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (12 bp):
ACCAAATTTGAA
Found at i:46434192 original size:59 final size:60
Alignment explanation
Indices: 46434100--46434218 Score: 231
Period size: 59 Copynumber: 2.0 Consensus size: 60
46434090 CCAACTTGAT
46434100 AGGAAAATAAAACGTCTTCGATCCGATAGAGGGGACGAGTATGGCGTT-ACTTTCTTAAA
1 AGGAAAATAAAACGTCTTCGATCCGATAGAGGGGACGAGTATGGCGTTAACTTTCTTAAA
46434159 AGGAAAATAAAACGTCTTCGATCCGATAGAGGGGACGAGTATGGCGTTAACTTTCTTAAA
1 AGGAAAATAAAACGTCTTCGATCCGATAGAGGGGACGAGTATGGCGTTAACTTTCTTAAA
46434219 GAGGTTTGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 48 0.81
60 11 0.19
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
AGGAAAATAAAACGTCTTCGATCCGATAGAGGGGACGAGTATGGCGTTAACTTTCTTAAA
Found at i:46435656 original size:82 final size:82
Alignment explanation
Indices: 46435557--46435715 Score: 273
Period size: 82 Copynumber: 1.9 Consensus size: 82
46435547 ATGTTATGTT
* * *
46435557 TATATATATATGGTTGATTTCATATGTATCATGAACAGGTATGATAACTTTTGAGTTTGATGGTG
1 TATATATATATGGTTGATTTCATATGTATCATGAACAAGTATGATAACTTGTGAGTTTGATAGTG
46435622 TTATATAGGCTTATATA
66 TTATATAGGCTTATATA
* *
46435639 TATATATTTATGGTTGATTTCATATGTATCATGAACAAGTATGCTAACTTGTGAGTTTGATAGTG
1 TATATATATATGGTTGATTTCATATGTATCATGAACAAGTATGATAACTTGTGAGTTTGATAGTG
46435704 TTATATAGGCTT
66 TTATATAGGCTT
46435716 TTATTAAGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (82 bp):
TATATATATATGGTTGATTTCATATGTATCATGAACAAGTATGATAACTTGTGAGTTTGATAGTG
TTATATAGGCTTATATA
Found at i:46446878 original size:16 final size:16
Alignment explanation
Indices: 46446857--46446887 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46446847 TTTTTTATTT
*
46446857 TTTTAATATTAAATAA
1 TTTTAAAATTAAATAA
46446873 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
46446888 TCATTAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAAATTAAATAA
Found at i:46448584 original size:24 final size:24
Alignment explanation
Indices: 46448534--46448578 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
46448524 AAAATTTAAA
*
46448534 TTAGGGTATTAGGTTTTTAATTCT
1 TTAGGGTATTAGGTGTTTAATTCT
*
46448558 TTAGGGTTTTAGG-GTTTAATT
1 TTAGGGTATTAGGTGTTTAATT
46448579 TTTTTAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.53
Consensus pattern (24 bp):
TTAGGGTATTAGGTGTTTAATTCT
Found at i:46451894 original size:486 final size:485
Alignment explanation
Indices: 46451116--46452389 Score: 1917
Period size: 486 Copynumber: 2.6 Consensus size: 485
46451106 GATTCGGGTG
* *
46451116 ATTTCTCAAAATCATTCGAAATTGGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
1 ATTTCTCGAAATCATTCGAAATTGAATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
* * * *
46451181 AATGAGTCCCAAGATTGCAATGTCAGTTTTAATTACAAATATTCGTAGTCAGTTT-AGTTACACA
66 AATGAGTCCCAAGATTGCTATTTCGGTTTTAATTACAAATATTCGTAGTCAGTTTGA-TTACACG
* ** * * * *
46451245 TCGTCATACCGCACGGAATGGATCACAAAACATAAAGTATTTGAGAAGATGCATAATAGGTGGGA
130 TCGTCATACCGCAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGA
* * * *
46451310 TGCGTCATACAATGATTTGTGGCAGTGGTGTCAGGTATTGGAGAAGTACATTCTAGATTGCGTAA
195 TGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTAA
* * * * *
46451375 ACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAATGTGCAATGCGAGACAGCAGA
260 ACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAGTGAAATGCAAGACAACAAA
*
46451440 TGTGCATGGAAAATCACGGCTTCTATTTAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTAC
325 TGTGCATGGAAAATCACGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAA-TTAC
*
46451505 CGCTCTGAATACGTGTGTTGCCGTGGGTACTGTTTCAAGACCGTATTATATTTGGGTGTTGAATT
389 CGCTCTGAATACGTGTGTTGCCGTGAGTACTGTTTCAAGACCGTATTATATTTGGGTGTTGAATT
46451570 CCTAACTTTAACATACTCGTATTGTTGCAAGT
454 CCTAACTTTAACATACTCGTATTGTTGCAAGT
** *
46451602 ATTTCTCGAAATCATTCGAAATTGAATTCGGAGATGATTTCAAATATAATAATACCTATGGTGAA
1 ATTTCTCGAAATCATTCGAAATTGAATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
* *
46451667 AATGAGT-CCAAGGATAGCTATTTCGGTTTGAATTACAAATATTCGTAGTCAGTTTGATTACACG
66 AATGAGTCCCAA-GATTGCTATTTCGGTTTTAATTACAAATATTCGTAGTCAGTTTGATTACACG
* * * *
46451731 TTGTCATATCGCAAGGCGTGGATCACAAAGCATAACGCATTGGAGAAGATACATAATGGGTGGGA
130 TCGTCATACCGCAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGA
* *
46451796 TGCGTCATACAATGATTTGTGGTAGTGGGGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTAA
195 TGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTAA
*
46451861 AATTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGAAATGCAAGACAACAA
260 ACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGG-AAAAAAGTGAAATGCAAGACAACAA
* * * *
46451926 ATGTGCATGGAAAATCATGGCTTCTGTTAAGAAGAAGATAGGGTTGTGGACCATAAAAAAATTAT
324 ATGTGCATGGAAAATCACGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTAC
* * *
46451991 CTCTCTGAATACGTGTGTTGTCGTGAGTACTGTTTCAAGACTGTATTATATTTGGGTGTTGAATT
389 CGCTCTGAATACGTGTGTTGCCGTGAGTACTGTTTCAAGACCGTATTATATTTGGGTGTTGAATT
46452056 CCTAACTTTAACATACTCGTATTGTTGCAAGT
454 CCTAACTTTAACATACTCGTATTGTTGCAAGT
* * * * *
46452088 ATTTTTTGAAATCATTCAAAATT-AGATTCGGAGATGATCGCAAATATAATACTACTTATAGTGA
1 ATTTCTCGAAATCATTCGAAATTGA-ATTCGGAGATGATCGCAAATATAATACTACCTATGGTGA
* * * *
46452152 AAATGAGTCCCAAGATTGCTATGTT-GGTTTTAATAACAAATATTCGTAGCCAGTTCGATTGCAC
65 AAATGAGTCCCAAGATTGCTAT-TTCGGTTTTAATTACAAATATTCGTAGTCAGTTTGATTACAC
* * * *
46452216 GTCGTCATACCTCAAGGCGTAGATCACAAAGCATAAAGCATTGGAGATGATGCATAATGGGTAGG
129 GTCGTCATACCGCAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGG
* * *
46452281 ATGCGTCATACAATAATTTGTGGCAGTGGTGTTAGGTACTGAAGAAGTACGTTCCAAATTGCGTA
194 ATGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTA
* *
46452346 AACTTTCACATTGTTAAATCTTATTCTGATAAGTTCAAGGAAAA
259 AACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAA
46452390 TCAAGGCTTC
Statistics
Matches: 709, Mismatches: 73, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
485 9 0.01
486 616 0.87
487 84 0.12
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (485 bp):
ATTTCTCGAAATCATTCGAAATTGAATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
AATGAGTCCCAAGATTGCTATTTCGGTTTTAATTACAAATATTCGTAGTCAGTTTGATTACACGT
CGTCATACCGCAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGAT
GCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTAAA
CTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAGTGAAATGCAAGACAACAAAT
GTGCATGGAAAATCACGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTACCG
CTCTGAATACGTGTGTTGCCGTGAGTACTGTTTCAAGACCGTATTATATTTGGGTGTTGAATTCC
TAACTTTAACATACTCGTATTGTTGCAAGT
Found at i:46456520 original size:462 final size:462
Alignment explanation
Indices: 46455656--46456533 Score: 1495
Period size: 462 Copynumber: 1.9 Consensus size: 462
46455646 TAGGGTTGTG
46455656 GACCATAAAGAAATTTACCGCTCTGCATACGTGTGTTGCCGTGGGTACTGTTTCAAGACTGTATT
1 GACCATAAAGAAATTTACCGCTCTGCATACGTGTGTTGCCGTGGGTACTGTTTCAAGACTGTATT
* **
46455721 ATATTTGGGTGTTGAATTCCTAACTTTAATGTACTCGTATTGTTGCAAGTATTTTTTGAAATCAT
66 ATATTTGGGTGTTGAATTCCTAACTTTAATGTACTCGTATTGTTGCAAGTATTTCTCAAAATCAT
*
46455786 TCGAAATTGGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAAAATGAGTCCCAAGAT
131 TCGAAATTGGATTCGGAGATGATCACAAATATAATACTACCTATGGTGAAAATGAGTCCCAAGAT
* * * * *
46455851 TACTGTGTCGATTTTAATTACAAATATTCATAGCTAATTCGATTACACATCGTCATACCGCAAGG
196 TACTATGTCGATCTTAATTACAAATATTCATAGCCAATTCAATTACACATCGTAATACCGCAAGG
* * *
46455916 CGTGGATCACAAAGCATAAAGTATTAGAGAAGATGCATAATGGGTGGGATGCGCCATACAATGAT
261 CGTGAATCACAAAGCATAAAGCATTAGAGAAGATACATAATGGGTGGGATGCGCCATACAATGAT
* * * *
46455981 TTGTGGCAGTGGTGTTACGTACTGGAGAAGTACGTTCCAGATTGCGTAAACATACACATTGTTAA
326 TTATGGCAGTGGTGTCACGTACTGGAGAAGTAAGTTCCAAATTGCGTAAACATACACATTGTTAA
46456046 ATCTTAGTTTGATAAGTTCAAGGAAATGCGAGGCAACAAATGTACATGGAAAATAACGGCTTCTG
391 ATCTTAGTTTGATAAGTTCAAGGAAATGCGAGGCAACAAATGTACATGGAAAATAACGGCTTCTG
46456111 TTAAGAA
456 TTAAGAA
* *
46456118 GACCATAAATAAATTTACCGTTCTGCATACGTGTGTTGCCGTGGGTACTGTTTCAAGACTGTATT
1 GACCATAAAGAAATTTACCGCTCTGCATACGTGTGTTGCCGTGGGTACTGTTTCAAGACTGTATT
46456183 ATATTTGGGTGTTGAATTCCTAACTTTAATGTACTCGTATTGTTGCAAGTATTTCTCAAAATCAT
66 ATATTTGGGTGTTGAATTCCTAACTTTAATGTACTCGTATTGTTGCAAGTATTTCTCAAAATCAT
*
46456248 TCGAAATTGTATTCGGAGATGATCACAAATATAATACTACCTATGGTGAAAATGAGTCCCAAGAT
131 TCGAAATTGGATTCGGAGATGATCACAAATATAATACTACCTATGGTGAAAATGAGTCCCAAGAT
* * * * *
46456313 TGCTATGTCGATCTTAATTACAAATATTCGTAGCCAGTTCAATTATACTTCGTAATACCGCAAGG
196 TACTATGTCGATCTTAATTACAAATATTCATAGCCAATTCAATTACACATCGTAATACCGCAAGG
* *
46456378 CGTGAATCACAAAGCATAAAGCATTGGAGAAGATACATAATGGGTGGGATGCGTCATACAATGAT
261 CGTGAATCACAAAGCATAAAGCATTAGAGAAGATACATAATGGGTGGGATGCGCCATACAATGAT
* * *
46456443 TTATGGCAGTGGTGTCAGGTACTGGAGAAGTAAGTTTCAAATTGCGTAAACTTACACATTGTTAA
326 TTATGGCAGTGGTGTCACGTACTGGAGAAGTAAGTTCCAAATTGCGTAAACATACACATTGTTAA
46456508 ATCTTAGTTTGATAAGTTCAAGGAAA
391 ATCTTAGTTTGATAAGTTCAAGGAAA
46456534 AATGTACAAT
Statistics
Matches: 387, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
462 387 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (462 bp):
GACCATAAAGAAATTTACCGCTCTGCATACGTGTGTTGCCGTGGGTACTGTTTCAAGACTGTATT
ATATTTGGGTGTTGAATTCCTAACTTTAATGTACTCGTATTGTTGCAAGTATTTCTCAAAATCAT
TCGAAATTGGATTCGGAGATGATCACAAATATAATACTACCTATGGTGAAAATGAGTCCCAAGAT
TACTATGTCGATCTTAATTACAAATATTCATAGCCAATTCAATTACACATCGTAATACCGCAAGG
CGTGAATCACAAAGCATAAAGCATTAGAGAAGATACATAATGGGTGGGATGCGCCATACAATGAT
TTATGGCAGTGGTGTCACGTACTGGAGAAGTAAGTTCCAAATTGCGTAAACATACACATTGTTAA
ATCTTAGTTTGATAAGTTCAAGGAAATGCGAGGCAACAAATGTACATGGAAAATAACGGCTTCTG
TTAAGAA
Found at i:46460131 original size:18 final size:18
Alignment explanation
Indices: 46460096--46460134 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
46460086 TTATATAAAT
* **
46460096 AATTATTTAAAATTATTA
1 AATTATGTAAAAAAATTA
46460114 AATTATGTAAAAAAATTA
1 AATTATGTAAAAAAATTA
46460132 AAT
1 AAT
46460135 ACAAGGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
AATTATGTAAAAAAATTA
Found at i:46470408 original size:78 final size:78
Alignment explanation
Indices: 46470284--46470562 Score: 306
Period size: 78 Copynumber: 3.6 Consensus size: 78
46470274 ATTCTTGTAG
* * * * * *
46470284 TTTAACAGGATTTGTTTGATTTCTATTTTAAACAGAAGATCGATTGAACACTCTTGTTTAAGGAT
1 TTTAACAGGATTTGTTTGATTTTTGTTTCAAACAGAAAATCAATTGAACACTCTTGTTTCAGGAT
46470349 TTTACTTCTATCA
66 TTTACTTCTATCA
* *
46470362 TTTAACAGGATTTGTTTGATTTTTGTTTCAAACTGAAAATCAATTGAATACTCTTGTTTCAGGAT
1 TTTAACAGGATTTGTTTGATTTTTGTTTCAAACAGAAAATCAATTGAACACTCTTGTTTCAGGAT
* *
46470427 TTTACTCCTA-CTG
66 TTTACTTCTATC-A
* * *
46470440 TTTAACAAGATTTGTTTG----TT-TTTCAAACAGAAACTCAATTGAACACT-TCTATTTCAGGA
1 TTTAACAGGATTTGTTTGATTTTTGTTTCAAACAGAAAATCAATTGAACACTCT-TGTTTCAGGA
46470499 TTTTA-TTCCTATCA
65 TTTTACTT-CTATCA
* * * *
46470513 TTTAACAGGATTTTTTTTATTTTTGTTTTAAATAGAAAA-CTAATTGAACA
1 TTTAACAGGATTTGTTTGATTTTTGTTTCAAACAGAAAATC-AATTGAACA
46470563 ATTCTATTCA
Statistics
Matches: 168, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
72 2 0.01
73 56 0.33
74 3 0.02
77 4 0.02
78 103 0.61
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (78 bp):
TTTAACAGGATTTGTTTGATTTTTGTTTCAAACAGAAAATCAATTGAACACTCTTGTTTCAGGAT
TTTACTTCTATCA
Found at i:46470594 original size:151 final size:154
Alignment explanation
Indices: 46470268--46470606 Score: 358
Period size: 151 Copynumber: 2.2 Consensus size: 154
46470258 CCTGTTTTAG
* * *
46470268 GATTTTATTCTTGTAGTTTAACAGGATTTGTTTGATTTCTATTTTAAACAGAAGATCGATTGAAC
1 GATTTTATTCTTGTCGTTTAACAGGATTTGTTTG--TTCTATTTCAAACAGAAGATCAATTGAAC
*
46470333 ACTCTTGTTTAAGGATTTTACTTCTATCATTTAACAGGATTTGTTTGATTTTTGTTTCAAACTGA
64 ACTCTTATTTAAGGATTTTACTTCTATCATTTAACAGGATTTGTTTGATTTTTGTTTCAAACTGA
* * *
46470398 AAATCAATTGAATACTCTTGTTTCAG
129 AAATCAATTGAAAACTCTTGATTCAC
* * * *
46470424 GATTTTACTCCT-ACTGTTTAACAAGATTTGTTTG-T-T-TTTCAAACAGAA-ACTCAATTGAAC
1 GATTTTATTCTTGTC-GTTTAACAGGATTTGTTTGTTCTATTTCAAACAGAAGA-TCAATTGAAC
* * * *
46470484 ACT-TCTATTTCAGGATTTTA-TTCCTATCATTTAACAGGATTTTTTTTATTTTTGTTTTAAA-T
64 ACTCT-TATTTAAGGATTTTACTT-CTATCATTTAACAGGATTTGTTTGATTTTTGTTTCAAACT
*
46470546 AGAAAA-CTAATTGAACAATTC-T-ATTCAC
127 -GAAAATC-AATTGAA-AACTCTTGATTCAC
*
46470574 GATTTTTATTCTTGTCGTTTAATAGGATTTGTT
1 GA-TTTTATTCTTGTCGTTTAACAGGATTTGTT
46470607 CAATTTCCAC
Statistics
Matches: 153, Mismatches: 21, Indels: 23
0.78 0.11 0.12
Matches are distributed among these distances:
150 12 0.08
151 107 0.70
152 5 0.03
153 1 0.01
156 28 0.18
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (154 bp):
GATTTTATTCTTGTCGTTTAACAGGATTTGTTTGTTCTATTTCAAACAGAAGATCAATTGAACAC
TCTTATTTAAGGATTTTACTTCTATCATTTAACAGGATTTGTTTGATTTTTGTTTCAAACTGAAA
ATCAATTGAAAACTCTTGATTCAC
Found at i:46473795 original size:31 final size:31
Alignment explanation
Indices: 46473760--46473972 Score: 248
Period size: 31 Copynumber: 6.9 Consensus size: 31
46473750 GTATATGTTT
*
46473760 TATACATTTCCAAATTTGATTTGTATATAGA
1 TATACATTGCCAAATTTGATTTGTATATAGA
* *
46473791 TATACATTGCCGAATTTGAATTGTATATAGA
1 TATACATTGCCAAATTTGATTTGTATATAGA
* * *
46473822 TATACATTGTCAAATTTGAATTGTTTATAGA
1 TATACATTGCCAAATTTGATTTGTATATAGA
* * *
46473853 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCAAATTTGATTTGTATATAGA
*
46473884 TATACATTGCCAAATTTGATTTGTATATGGA
1 TATACATTGCCAAATTTGATTTGTATATAGA
*** * * * *
46473915 TATACATTGTTGAA-TCGATTTATGTGTAGA
1 TATACATTGCCAAATTTGATTTGTATATAGA
* *
46473945 TATACATTGCCGAATTTGATTCGTATAT
1 TATACATTGCCAAATTTGATTTGTATAT
46473973 GGGTATTGTT
Statistics
Matches: 152, Mismatches: 29, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
30 23 0.15
31 129 0.85
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.43
Consensus pattern (31 bp):
TATACATTGCCAAATTTGATTTGTATATAGA
Done.