Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 140 of 210
Found at i:46473826 original size:62 final size:62
Alignment explanation
Indices: 46473760--46473972 Score: 275
Period size: 62 Copynumber: 3.5 Consensus size: 62
46473750 GTATATGTTT
* *
46473760 TATACATTTCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGA
1 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* * * * *
46473822 TATACATTGTCAAATTTGAATTGTTTATAGATATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* ** * * * *
46473884 TATACATTGCCAAATTTGATTTGTATATGGATATACATTGTTGAA-TCGATTTATGTGTAGA
1 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
* *
46473945 TATACATTGCCGAATTTGATTCGTATAT
1 TATACATTGCCAAATTTGATTTGTATAT
46473973 GGGTATTGTT
Statistics
Matches: 130, Mismatches: 21, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
61 36 0.28
62 94 0.72
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.43
Consensus pattern (62 bp):
TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGATTTGTATATAGA
Found at i:46473900 original size:93 final size:92
Alignment explanation
Indices: 46473760--46473974 Score: 286
Period size: 93 Copynumber: 2.3 Consensus size: 92
46473750 GTATATGTTT
* * * *
46473760 TATACATTTCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCAAATTTGAATTGTATATAGATAT
* * *
46473825 ACATTGTCAAATTTGAATTGTTTATAGA
66 ACATTGTCAAA-TCGAATTATGTATAGA
* * *
46473853 TATACATTGCCGAATTTGATTTGTATATGGTTATACATTGCCAAATTTGATTTGTATATGGATAT
1 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCAAATTTGAATTGTATATAGATAT
** * *
46473918 ACATTGTTGAATCGATTTATGTGTAGA
66 ACATTGTCAAATCGAATTATGTATAGA
*
46473945 TATACATTGCCGAATTTGATTCGTATATGG
1 TATACATTGCCGAATTTGATTTGTATATGG
46473975 GTATTGTTGT
Statistics
Matches: 107, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 40 0.37
93 67 0.63
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (92 bp):
TATACATTGCCGAATTTGATTTGTATATGGATATACATTGCCAAATTTGAATTGTATATAGATAT
ACATTGTCAAATCGAATTATGTATAGA
Found at i:46474175 original size:43 final size:43
Alignment explanation
Indices: 46474114--46474347 Score: 378
Period size: 43 Copynumber: 5.4 Consensus size: 43
46474104 TTCGAGGTGT
* *
46474114 GATTTTGTGTAAGACCATAGCTGGGCTATTTGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
46474157 GATTTCGTGTAAGACCATAGCTGGGCTATTGACATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
46474200 GATTTCGTGTAAGACTATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
46474243 GCTTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * *
46474286 GATTTCGTGTAAGACCATAGCTGGGCTATTGGTATCGATATAA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
46474329 GATTTCCATGTAAGACCAT
1 GATTT-CGTGTAAGACCAT
46474348 GTCTGAGACA
Statistics
Matches: 178, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 166 0.93
44 12 0.07
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:46477430 original size:12 final size:13
Alignment explanation
Indices: 46477406--46477434 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46477396 GGGCTATAAC
46477406 TATTGCATTTATT
1 TATTGCATTTATT
46477419 TATTGC-TTTATT
1 TATTGCATTTATT
46477431 TATT
1 TATT
46477435 AATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:46479602 original size:24 final size:24
Alignment explanation
Indices: 46479562--46479607 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
46479552 AACGAGCTAG
*
46479562 TGATTTATTGGGCCTAATAAATTT
1 TGATGTATTGGGCCTAATAAATTT
46479586 TGATGTATGTGGG-CTAATAAAT
1 TGATGTAT-TGGGCCTAATAAAT
46479608 ACACAGGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (24 bp):
TGATGTATTGGGCCTAATAAATTT
Found at i:46496632 original size:23 final size:23
Alignment explanation
Indices: 46496606--46496671 Score: 89
Period size: 26 Copynumber: 2.7 Consensus size: 23
46496596 AAAACGTTTG
46496606 ATAAATACTAAATTGAAAAAA-AA
1 ATAAATACTAAATT-AAAAAATAA
46496629 ATAAATACTAAATTAAAAAATTAA
1 ATAAATACTAAATTAAAAAA-TAA
46496653 ATTCAAATACTAAATTAAA
1 A-T-AAATACTAAATTAAA
46496672 CCCCAATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
22 6 0.15
23 14 0.36
24 3 0.08
25 1 0.03
26 15 0.38
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (23 bp):
ATAAATACTAAATTAAAAAATAA
Found at i:46496648 original size:20 final size:21
Alignment explanation
Indices: 46496606--46496671 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 21
46496596 AAAACGTTTG
46496606 ATAAATACTAAATTGAAAAAAAA
1 ATAAATACTAAATT--AAAAAAA
46496629 ATAAATACTAAATTAAAAAATTAA
1 ATAAATACTAAATT-AAAAA--AA
46496653 ATTCAAATACTAAATTAAA
1 A-T-AAATACTAAATTAAA
46496672 CCCCAATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.15
23 14 0.36
24 3 0.08
25 4 0.10
26 12 0.31
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (21 bp):
ATAAATACTAAATTAAAAAAA
Found at i:46498587 original size:35 final size:34
Alignment explanation
Indices: 46498516--46498587 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
46498506 TCTAGTTATT
* * * *
46498516 TGTTCCTAGCTAATGTTTACAAGTTTTGGAGGAA
1 TGTTCCCAACTAATGTTTACAAGTTTTGCAGAAA
*
46498550 TGTTCCCAACTAATGTTTACACGTTTTTGCAGAAA
1 TGTTCCCAACTAATGTTTACAAG-TTTTGCAGAAA
46498585 TGT
1 TGT
46498588 GGTTTTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
34 20 0.62
35 12 0.38
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (34 bp):
TGTTCCCAACTAATGTTTACAAGTTTTGCAGAAA
Found at i:46499231 original size:16 final size:17
Alignment explanation
Indices: 46499207--46499239 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
46499197 ATAATCAATA
46499207 CATGTACGTCTCAAATT
1 CATGTACGTCTCAAATT
46499224 CATG-ACGTCTCAAATT
1 CATGTACGTCTCAAATT
46499240 GACCACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (17 bp):
CATGTACGTCTCAAATT
Found at i:46500514 original size:16 final size:16
Alignment explanation
Indices: 46500493--46500524 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
46500483 TAAAGACATA
46500493 TACGTCTCAAATTCAT
1 TACGTCTCAAATTCAT
46500509 TACGTCTCAAATTCAT
1 TACGTCTCAAATTCAT
46500525 CACAATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
TACGTCTCAAATTCAT
Found at i:46500885 original size:613 final size:612
Alignment explanation
Indices: 46499561--46510839 Score: 5458
Period size: 613 Copynumber: 18.0 Consensus size: 612
46499551 CTTCACTTCT
* * * *
46499561 CCTTTAAGCTCCCTACTTTCTCCCTT-AACCTCTCATCATCATATTTCTTATCCTTTTCATTGTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAA-CTCTCATCATCATATTTCTCATCCTTTTCATTGTT
* * * * * *
46499625 TACTTATTTTCGACTCTAAAATGTTTGGAATAAAAACGCTTGCATGGTTAGCCTTTTTTATATCT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACA
* * * * * *
46499690 GCTTATA-TAGTGATTTTGTACCTTCTCGCACATTCTGCTTTAGGAGAAAA-ATTGTTTAAAGTC
130 GCTTATACT-GCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTT-TTTAAAGTC
* * * * *
46499753 TTTATGAGTCCACGGTATTATGGTCATATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTG
193 ATTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTG
* *
46499818 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTAAAAAAATATGGTATTATAGTAAAGACATATA
258 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATA
* * * * *
46499883 AGTCTCAAATTCATTACTTCCCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCT
323 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCT
46499948 CTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
388 CTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
*
46500013 AACAATAACAACAGTTAGCATTTTAAATAT-AAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
453 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
* * *
46500077 TATAATTTTTCTTGTTTATTTAAAATAAGACAAAATCATAAGAATCTAAAAATTACACCTATGAA
518 TATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
*
46500142 AATTACACAAAAATAACAAGACTGCACTTAG
583 AATTACACAAAAATCACAAGACTGC-CTTAG
* * *
46500173 CCTTCAAGCTCCCTTCTTTCTTCTTTCAAATCTCATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * *
46500238 ACTAATTTTCGACTCTAAAATGTCTT-GAATAGAAACTCTTGCATTGTCAGCCCTTTTTATAGCC
66 ACTTATTTTCGACTCTAAAATGT-TTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACA
*
46500302 GCTTATACTGCGATTCTCTACCTTCTTGCACATTCTAATTTAGGAGAAAAGCTTTTTAAAGTCAT
130 GCTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCAT
*
46500367 TATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTGTT
195 TATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTT
46500432 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATACG
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATACG
* *
46500497 TCTCAAATTCATTACGTCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTCT
325 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTCT
46500562 TATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAA
390 TATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAA
46500627 CCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATA
455 CCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATA
**
46500692 TAGTTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAA
520 TAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAA
* *
46500757 TTACACAAAAATAACAAGACTACACTTAG
585 TTACACAAAAATCACAAGACTGC-CTTAG
*
46500786 CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * *
46500851 ACTTATTTTCGACTCTAAAATGTTTTGAATAGAAACTCTTGCATTGTCAGCCCTTTTTATAGCAG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
*
46500916 CTTATACTGCGATTCTCTACCTTCTTGCACATTCTAATTTAGGAGAAAAGCTTTTTAAAGTCATT
131 CTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCATT
*
46500981 ATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTC-TGATT
196 ATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTG-TT
* * * * *
46501045 ATCTGTTCCCTGCTAATATTTACACGTTTTTGGGGGAAATATGGTATTGTAGT---GA-A-A-A-
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTT-GAGAAAATATGGTATTATAGTAAAGACATATAC
* *
46501103 ----C--A-T--GTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCC-AAAAAGTCTC
324 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTC
46501158 TTATC-GAAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
389 TTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
* * * * * * * *
46501222 AGCCATAACAACAGTGAGAATTTTCAGTATAAAAAATGTTTATATAGTCGTTTTAGTCCCATTAA
453 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
* * * * *
46501287 TAAAAATTTTCCTTTTTACTTAAAATAAGATAAAATCATAAGAATCAGAAAATTACACCTATGAA
518 TATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
*
46501352 AATTACACAAAAATCACAAGACTGCTTTCAG
583 AATTACACAAAAATCACAAGACTGCCTT-AG
* *
46501383 CCTTAAAGCTCCCTCCATTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATCT-TT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCAT-TGTT
* *
46501447 TACTTA-TTTCTGACTCTAAAAAGTTTGGAATTGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
65 TACTTATTTTC-GACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
* * * * * *
46501511 CGTTTATACAT-CAATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAG-TTGTTTAAAGT
129 AGCTTATAC-TGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTT-TTTAAAGT
* *
46501574 CTTTATGAGTCCATGGTATT-GTGGTCCTATTATGTTCCTTATTTGGCAGTTGATTCTCCTCT-T
192 CATTATGAGTCCATGGTATTAG-GGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCT
* * * *
46501637 TGGTTATTTGTTCCCAGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAG-AATGACAT
256 T-GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACAT
* * *
46501701 GTACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCACCTTCAAAAAAG
320 ATACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAG
*
46501766 TCTCTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATCAGTAATA
385 TCTCTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATA
46501831 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
450 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
*
46501896 TAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCAAT
515 TAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTAT
* * * *
46501961 GAAAATTA-AAAAAAATCACATGATTGCCTTTAA
580 GAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * **
46501994 CCTTCAAGCTCCCTCCTTTTTTCCTTCAACTCTCATCATCATATTTCCCATCCTTCCCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * *
46502059 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAGCTTTTGCATGGTCAGACCTTTTTATAACAA
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
* * * * *
46502124 CTTATACAGTGATTCTC-ACACTTTTTGCACATTCTGATTTAGGAGAAATGCTTTTTCAAGTCAT
131 CTTATACTGCGATTCTCTAC-CTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCAT
* * * * * * *
46502188 TATGACTTCATGCTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATT-TCCGCT-TTGGT
195 TATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTT-GT
* * * *
46502251 TTTTTGTTCCCTGCTAATATTTACACTTTTTTTTGAG-AAATATGGTATTATAGTAAAGACATGT
259 TATTTGTTCCCTGCTAATGTTTACAC--GTTTTTGAGAAAATATGGTATTATAGTAAAGACATAT
* * *
46502315 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGTC
322 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTC
* * * * * * * *
46502380 GCTTATTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATAT
387 TCTTA-TCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATAT
* * * * * * * *
46502445 AAAACGATAACAGCAATTAGAAATTTT-AATATAAAAAATAGTTTTATTCTAGTTTTAGTCCCAC
451 AAAACCATAACAACAGTTAG-CATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
* * * * *
46502509 TAATATAAATGTTCTTTTTT-TCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTAC
515 TAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTAT
* *
46502573 AAAAATTACACAAAAATCACAAGACTACCTTTAG
580 GAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * * * * * * *
46502607 TCTTCACGTTCCCTCATTTCTT-CTGTCAAC-CTTCA-AACTCCCTCCTTTCTTCACTTCTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCT-TCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTT
* * * * * * * * ** * * * * *
46502669 CA-AG-CTCCCTACTTTC-TCCCT-TAACCTTT--CATCATCATA-T-TT-C-T--T-ATCCTTT
58 CATTGTTTACTTATTTTCGACTCTAAAATGTTTGGAAT-A-GAAACTCTTGCATGGTCAGCCCTT
* * * * ** * **** * *
46502721 TCGTTGTTTA-A--TTAT-TTTCGA--CTCTAAAATGT-TTGGA-ATAGAAACTCTTA-CATGGT
121 T--TT-ATAACAGCTTATACTGCGATTCTCT-ACCT-TCTTGCACATTCTGA-T-TTAGGA--GA
* * * * * ** * * * *
46502777 CAAGCTTTTTTATAACCTC-TTATAAAG-CGAT--TCTCTACCGTCTCGCA-CAT-TCTACTTCA
177 AAAGC-TTTTTA-AA-GTCATTAT-GAGTCCATGGTAT-TAGGGTC-C-TATTATGT-TCCCT-A
** * **** ** * * * **
46502836 -AGGGAAAAGTTG-TT-TAAAGTC-T-TTATGAG-TCCATGGTATTATGGTCCTATTCTGTTCCC
233 TTTGG--CAGTTGATTCTCCTCTCTTGTTATTTGTTCCCTGCTA--AT-GT-TTACAC-GTT---
* * * ** *** ** ** *
46502895 TAGTTG-G-CAGT-T-G-ATTCTCCTCTTTG-GTTATTTGTTCCCAGCTAATGT--TTACATGTT
288 T--TTGAGAAAATATGGTATTATAGT-AAAGACATATACG-TCTCA---AAT-TCATTAC--G--
* ** * * * *
46502952 TCTAGGGAAATATGAT-ATTAT-A-GTA-AA-GACAGTACGTCTC---AAA-T-TCATTA-CATC
341 TCT---CAAAT-TGATCACAATAACCTACAATG-C--CACCTC-CAAAAAAGTCTC-TTATCA-G
** * *** ** ** ** *
46503006 TCAAATT-GAT-CACAATAACCTACAATGCCACCTTCAAA-AAAGTCTCTTACCGGAAAAATTGG
396 AAAAATTGGATCCA-AAT-A-CTATAATAATACGATCAAATATGGT-GATTA---G--TAA-T--
* * * * * * **** *
46503068 ATCCAAATACTATAATAATATGATCA-AATATGGTGATCAATAATATAAAACCATAACAACAGTT
449 AT--AAA-ACCATAACAACA-G-TTAGCAT-T--T--T--A-AATATAAAA-AATGGTTATA-TT
* * * * * * * * *** *
46503132 AG-CATTTTAAAT---A-TAA-A-AAATGGTTATATTGTCATTT-TAGTCCCAC-TAAT-ATAAT
499 -GTCGTTTT-AGTCCCACTAATATAAAT-TTTCT-TTTTTATTTAAAATAAGACAAAATCATAA-
*** *** * ** * * * * * * * *
46503187 TTTTCTTTTTTATTTA-AAATAAGATAAAAT-CATAAGAATCTGAAAATTAC-ACCTATGAA
559 GAATC--TGAAAATTACACCTATGA-AAATTACACAAAAATC--ACAA-GACTGCCT-T-AG
** * ** ** * * *
46503246 AATTAGAAAAAATCACATGACTGCCTTT-AACCTTCAAGCTC-CCTC--CTTTTTTCCTTC-TAC
1 CCTT---CAAGCTC-C----CT-CCTTTCTTCCTTCAA-CTCTCATCATCATATTT-C-TCAT-C
** * * * * * ** * * * ** * * *
46503306 TCTCATCATCATATTT-CTCATCCTTCTC-ATTGTTCACTTCTTTTAGACTCTAAAATGTTTGGA
53 -CTTTTCAT--TGTTTACTTAT--TT-TCGACT-CTAAAAT-GTTTGGAATAGAAACT-CTT-GC
*** * ** ** * *
46503369 AT-AAAAGCTCTTACATGTTCA-GGCTTTTTTATAACCGCTTATAAAGCGATTCTCTACCGTCTC
108 ATGGTCAGCCCTT---T-TT-ATAAC---------A--GCTTATACTGCGATTCTCTACCTTCTT
* * * *
46503432 GCACATTCT-ACTTCAAGG-GAAAAG-TTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCT
157 GCACATTCTGA-TT-TAGGAGAAAAGCTT-TTTAAAGTCATTATGAGTCCATGGTATTAGGGTCC
* * * *
46503494 TATTCTATTCCCTATTTGGCAGTTGATTCTCCACTCTAGTTATTTGTTCCCTTG-TAATGTTTAC
219 TATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTTATTTGTTCCC-TGCTAATGTTTAC
* * * * * * *
46503558 ACGTTTATGGGGAAATATTGTCTTATAGTAAAGACATGTACTTCTCAAATTCATTACGTCTCAAA
283 ACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATACGTCTCAAATTCATTACGTCTCAAA
* * * * * * *
46503623 CTGGTCACAATAACCTACAATTCCACCTCTAACAAAGTCTCTTATC-GAGAAAGTTGAATCCAAA
348 TTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTCTTATCAGA-AAAATTGGATCCAAA
* * * * * *
46503687 TACTATAATAATAC-AGGCAAATATGGTCATTAGTAATATAAAATCAAAAAAATAGTTAGCATTT
412 TACTATAATAATACGA-TCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTT
* * * * * * * *
46503751 TGAATAGAAAAAACGGTTATATTATGGTTTTAGCCCCACTAATATTATTTTTCTTTTTTATTTAA
476 TAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAAATTTTCTTTTTTATTTAA
* * * * * * * *
46503816 AATAAGA-TAAATACATAAGAATCTGAAAATTACACCTACGAAATTTAAATAAATATGACAAGGC
541 AATAAGACAAAAT-CATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGAC
*
46503880 TACCTGTAG
605 TGCCT-TAG
* * * * * *
46503889 CCTTCAAGTTCCCTCATTTCTTCCTTCAACTCACATCATCATATATCTCATCTTTTTCATTCTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * *
46503954 ACTTATTTTCGACTCTAAAATTTTTTGAATACAAACTCTTGCATTGTCAGTCCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
* * * * *
46504019 CTTATACAGCGATTCTCTACCTTCTCGTACATTCTGATATAGGAGAAAAG-TTGTTTAAAGTCTT
131 CTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTT-TTTAAAGTCAT
* ** * * *
46504083 TATAAGTCCATGGTATTATAGTCCTTTTATGTTCCCTATTTGGTAGTTGATTCTCC-CT-TGGTT
195 TATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTT
* * * *
46504146 ATTTTTTCCTTGCTAATGTTTATACGTTTTTTGAG-AAATATGGTATTATAGTAAAGACATGTAC
260 ATTTGTTCCCTGCTAATGTTTACACG-TTTTTGAGAAAATATGGTATTATAGTAAAGACATATAC
* ** * * *
46504210 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACTTGTAATGCCACCGCCAACAAACTCTC
324 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTC
* * ** * * *
46504275 GTATC-GAAAAAATTGAATATAAATACTATAAGAATACGAGCAAATA---TGATTGGTAATATAA
389 TTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
* * * * * *
46504336 AACCATAACAACAATTACCATTTTAGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTCA
453 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
* * * * *
46504401 TAT-AA-----TTTTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACGCCTA-CAC
518 TATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA-
*
46504458 AAATTACATAAAAATCACAAGACTGCCTTTAG
582 AAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46504490 CCTTCAAGCTCCCTCCTTTCTTCTTTCATC-CTTAAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* ** * * ** ** **** * * * *
46504552 CA-AGCTCCCAACTTTATTCCTTCAACTCT--CAT-CATCAAATTTCTCACCCTTTTCATTGTTT
58 CATTG-T--TTAC-TTATT--TTCGACTCTAAAATGTTTGGAA-TAGAAACTC-TTGCA-TGGTC
* * * * ** * * ** * * *
46504613 A--CTTATTTTCGACTCTAA-AG-TGTTTGGCAT-AGAAACTCTTCGATGGTTAGCCCTTTTTAT
114 AGCCCT-TTTT--A---TAACAGCT-TAT-AC-TGCGATTCTCTAC-CTTCTT-GCAC--ATTCT
* * * * * *** * * * *** *
46504673 AACTGCTTA-TA-TAACGATTTTGTACCTTC-TCCA-CAGT-C-TGCT-TTAGGAG-AAAAGT-T
166 GA-T--TTAGGAGAAAAGCTTTT-TAAAGTCAT-TATGAGTCCATGGTATTAGG-GTCCTATTAT
** * * * ** * **
46504729 GTTTAAAGTCTTTTTGAGTCCA-TGGTATTATGGTC-C-TATTA--TGTT-CC--CT-A-GTTGG
225 G-TT---CCCTATTTG-G--CAGTTG-ATTCTCCTCTCTTGTTATTTGTTCCCTGCTAATGTTTA
* ****** * ** * * *
46504784 CA-GTTGATT-CTCCTCTTTGGTTATT-T-GTTCCCAG-C-TA-ATGT-TTACATGT--TT-C-T
282 CACGTT-TTTGAGAAAATATGG-TATTATAG-T-AAAGACATATACGTCTCAAAT-TCATTACGT
*** * * * ** * * ***
46504837 AGGGAAATATGGTATTATAGTAA-AGAC-ATG-TACGTCTC---AAA-T-TCATTA-CATCTCAA
342 -CTCAAAT-T-G-ATCACAATAACCTACAATGCCACCTC-CAAAAAAGTCTC-TTATCA-GAAAA
* *** ** ** ** *
46504893 ATT-GAT-CACAATAACCTACAATGCCACCTTCAAA-AAAGTCTCTTACCAGAAAAATTGGATCC
400 ATTGGATCCA-AAT-A-CTATAATAATACGATCAAATATGGT-GATT---AG--TAA-T--AT--
* * * * * *
46504955 AAATACTATAATAATACGATCA-AATATGTTGATCAATA-ACAACAGTTAGCAT-TTTAAATATA
451 AAA-ACCATAACAACA-G-TTAGCAT-T-TT-A--AATATA-AA-A---A--ATGGTT--ATAT-
** * * *
46505017 AAAATGGTTATATTGTCATTTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGATA
498 ----T-GTCGT-TT-T-A-GT----CCCACTAATATAAATTTTCTTTTTTATTTAAAATAAGACA
* * * *
46505082 AAATTATAAGAATCTGAAAATTACACCTATGAAAATTAGA-AAAAATCACATGACTGCCTTTAA
550 AAATCATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46505145 CCTTCAAGCTCCCTCCTTTTTTCCTTCTACTCTCATCATCATATTTCTCATCCGTCTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * ** *
46505210 ACTTCTTTTAGACTCTAAAATGTTTGGAATA-AAAGCTTTTGCATGGTCAAACCTTTTTATAACT
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAA-CTCTTGCATGGTCAGCCCTTTTTATAACA
* * * *
46505274 GCTTATACAGTGATTCTC-ACACTTCTTGCACATTCTGATTTAGGAGAAATGCTTTTTCAAGTCA
130 GCTTATACTGCGATTCTCTAC-CTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCA
* * * * * *
46505338 TTATGACTTCATGGTTTTACGGTCCTATAATGTACCCTATTTGGCAGTTGATT-T-CTGCT-TTG
194 TTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCT-CTCTT-
* * * * *
46505400 GTTTTTTGTGCCCTGCTAATATTTACACGTTTTTG-GAGAAATATGGTATTTTAGTAAAGACATG
257 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGA-AAATATGGTATTATAGTAAAGACATA
* * * *
46505464 TACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGT
321 TACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGT
* * * * * * *
46505529 CTCTTATTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATA
386 CTCTTA-TCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATA
* * * * * * * * * *
46505594 TAAAACGATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTGCCAC
450 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
* * * *
46505659 TAATATAAATTTTCTTTTTT-TCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTAC
515 TAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTAT
46505723 GAAAATTACACAAAAATCACAAGACTGCCTTTAG
580 GAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * * * * *
46505757 TCTTTAAGTTCCCTCATTTCTTCTTTCAAC-CTTCAAACTCCCTCTTCACTTCTCCTTCAAGCTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TC--A-T-CATCAT-A-TT-T-C-TC-A--T-
* * * * **
46505821 CCTACTTTCTCCCTTAACCTCTTATCATCATATTTCTTATCCTTTTCATTGTTTACTTATTTTCG
52 -C--CTTT-T-CATT---GT-TTA-C-TTAT-TTTC-GA--C---TC--T-AA------------
* * * **
46505886 ACTCTAAAATGTTTGGAATAGAAACTCTTACATGGTCAGGCTTTTTTATAACCA-CTTATAAAGC
84 -------AATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAA-CAGCTTATACTGC
* * * * *
46505950 GATTCTCTACCGTCTCGCACATTCT-ACTTCAAGG-GAAAAG-TTGTTTAAGGTCTTTATGAGTC
141 GATTCTCTACCTTCTTGCACATTCTGA-TT-TAGGAGAAAAGCTT-TTTAAAGTCATTATGAGTC
* * * *
46506012 CATGGTATTATGGTCCTATTCTGTTCCCTATTTGGCAGTTGATTCTCCACTCTAGTTATTTGTTC
203 CATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTTATTTGTTC
** * * * * * * *
46506077 CCTTATAATGTTTACACGTTTATGGGGAAATATTGTCTTATAGTAAAGACATGTACTTCTCAAAT
268 CCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATACGTCTCAAAT
* * * * *
46506142 TCATTACGTCTCAAACTGGTCACAATAACCTGCAATGCCGCCTCCAACAAAGTCTCTTATC-GAA
333 TCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTCTTATCAGAA
* * *
46506206 AAAGTTGAATCCAAATACTATAATAATACAGGA--AAATATGGTCATTAGTAATATAAAACAAAA
398 AAA-TTGGATCCAAATACTATAATAATAC--GATCAAATATGGTGATTAGTAATATAAAAC--CA
* * * * ** * * *
46506269 AAAAAACAGTTAGCATTTTGAATAGAAAAAACAGTTATATTGTGGTTTTAGCCCCACTAATATTA
458 TAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAA
* * * * * * *
46506334 TTTTTCTTTTTTATTTAAAATAAGATAAATTCATAAGAATATGAAAATTACTCCTACGAAATTTA
523 ATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTA
* * * * * *
46506399 AACAAATATGACAAGGCTACTTATAG
588 CACAAAAATCACAAGACTGCCT-TAG
* * * * * *
46506425 CCTTCAAGTTCCCTCATTTCTTCCTAT-AACTCACATCATCATATATCTCATCTTTTTCATTCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCT-TCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTT
* * * * * * *
46506489 TACTTACTTTCGACTCTAAAATGTTTTGAATACAAACTCTTGCATTGTCAGTCCTTTTTAAAACC
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACA
* * * * * *
46506554 GCTTATACAGCGATTCTCTACCTTCTCGCACATTCTGATATAGGAGAAAAGCTGTTTAAAGCCTT
130 GCTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCAT
** * * * * *
46506619 TATGAGTCCATGGTATTATAGTCTTTTTATGTTCCCTACTTGGTAGTTGATTCTCC-CT-TGGTT
195 TATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTT
* * * * *
46506682 ATTTGTTCCTTGCTAATGTTTTCAAGTTTTTG-GAGAAATATGGTATTATAGTAAAGGCATGTAC
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGA-AAATATGGTATTATAGTAAAGACATATAC
* ** * *
46506746 GTCTCGAATTCATTACGTCTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTCTC
324 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTC
* ** * * * *
46506811 TTATC-GAAAAAATTGAATATAAATACTATAAGAATATGAGCAAATA---TGATTGGTAATATAA
389 TTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
* * * * *
46506872 AACCATAACAACAATTACCATTTTAGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTAA
453 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
* * * *
46506937 TAT-AA------TTTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACACCTA-CAC
518 TATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA-
46506993 AAATTACACAAAAATCACAAGACTGCCTTTAG
582 AAATTACACAAAAATCACAAGACTGCC-TTAG
** * *
46507025 CCTTCAAGCTCCCTCCTTTCTTTTTTCATGCT-TCAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCA-ACTCTCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* ** * * ** ** **** * * * *
46507087 CA-AGCTCCCAACTTTATTCCTTCAACTCT--CAT-CATCAAATTTCTCACCCTTTTCATTGTTT
58 CATTG-T--TTAC-TTATT--TTCGACTCTAAAATGTTTGGAA-TAGAAACTC-TTGCA-TGGTC
* * * * * ** * **
46507148 A--CTTATTTTCGACTCTAAAATGTTTGGCATAGAAACTTTTCCATGGT-TAGCCCTTTTTATA-
114 AGCCCT-TTTT--A---TAACA-GCTT---AT----AC--TGCGATTCTCTA--CCTTCTTGCAC
** * * * **** * ** * * * *** * **
46507209 ACCGCTTATATAACGATTCTGTACCTTCTCGCACAGTCTGCTTTAGGAGAAAAGTTGT-TTAAAG
161 A-TTCTGAT-TTAGGA--GAAAAGCTT-T-TTAAAG--T-CATTATGAGTCCA-TGGTATTAGGG
* * * * * ** *
46507273 T-CT-TTTTGAGTCCATGGTATTATGGTCCTATTATG-TTC-CCT-TTTTGGCAGTTGATTCTCC
216 TCCTATTATG-TTCC---CTATT-TGG--C-AGT-TGATTCTCCTCTCTTGTTATTTG-TTC-CC
* * * * * * *
46507333 TATTTGGTTATTTGTTTCCTGCTAATGTTTACATATTTCTAGGGAAATATGGTATTATAGTAAAG
270 ----TGCTAATGT-TTA----C--ACG--T---T-TTT-GA-GAAAATATGGTATTATAGTAAAG
* * * *
46507398 ACATGTACGTCTCAAATTCATTACTTCTTAAATTGATCACAATAACCTGCAATGCCACCTCCAAA
316 ACATATACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAA
* *
46507463 AAAATCTCCTT-TC-GAAAAAATTGGATCCAAATACTATAATAATACGATCAAGTATGGTGATTA
381 AAAGTCT-CTTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTA
* *
46507526 GTAATATAAAACCATAACAACAGTTATCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAG
444 GTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAG
* * * * *
46507591 TCCCAGTAATATAATTTTTCTTTTTTATTTAAAAGAAGACAAAATCATAAGAATCTGGAAAGTAC
509 TCCCACTAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTAC
* * *
46507656 -CCTTATGAAAATTACACAAAAATCACATGACTACCTTTAA
574 ACC-TATGAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46507696 CCTTTAAGCTCCCTCCTTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * **
46507761 AATTGTTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGGTCAACCCTTTTTATAATTG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
* * * * *
46507826 CTTATACAGTGATTCTCTACCTTCTTGTACATTTTGATTTAGGAGAAAAGCTTCTTAAAGTCATT
131 CTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCATT
* * * * *
46507891 ATGAGTCCATGGTTTTATGGTCCTATTATGTACCTTATTTGGCAGTTGATTCTCCT-TTTTGGTT
196 ATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTT-GTT
* * * *
46507955 ATTT-TTTCCTGTTAATATTCACACGTTTTT-AGAGAAATATGGTATTATAGTAAAGAC--AT--
260 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGA-AAATATGGTATTATAGTAAAGACATATAC
* * * *
46508014 G--T---A--C---A--TCTCAAATTGATCACCATAACCTGCAATGCCACCTCCAACAATGTCTC
324 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTC
* * ** * *
46508067 TTAT-AAAAAAATTGAATCCAAATACTATAATAATACGAGAAAATATGATAATTAGTAATATAAA
389 TTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAA
* * * * ** * * *
46508131 ACCATAAAAATAATTAGAATTTTTAAA-ATAAAAAACAGTTTTATTGTGGTTTTAGTCCTACTAA
454 ACCATAACAACAGTTAGCA-TTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
* *
46508195 TATAAATTTTCTTTTTT-TTCTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGA
518 TATAAATTTTCTTTTTTATT-TAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA
46508259 AAATTACACAAAAATCACAAGACTGCCTTTAG
582 AAATTACACAAAAATCACAAGACTGCC-TTAG
* *
46508291 TCTTCATGTTCCCTCCTTTCTTCACTCCTTCTTCAAGCTCCCTACTTTCTCCTTTAACCTCTCAT
1 CCTTCAAG----CTCC---C-TC-CT--TTC-T-----T--C--C--T-T-C---AA-CTCTCAT
* * * **
46508356 CGTCATATTTCTTATCCTTTTCACTGTTTACTTATTTTATACTCTAAAATGTTTGGAATAGAAAC
37 CATCATATTTCTCATCCTTTTCATTGTTTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAAC
* * * ** * **
46508421 TCTTACATGGTCAGCCTTTTTTATAACCGCTTATAAAGCGATTCTCTACCGTCTCACACATTCTG
102 TCTTGCATGGTCAGCCCTTTTTATAACAGCTTATACTGCGATTCTCTACCTTCTTGCACATTCTG
* * * * *
46508486 CTTCAGGAGAAAA-CTTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCCTATTCTGTTCCC
167 ATTTAGGAGAAAAGCTT-TTTAAAGTCATTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCC
* * * * *
46508550 TATTTAGCAGTTGGTTCTCCTCTCTGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGGG
231 TATTTGGCAGTTGATTCTCCTCTCTTGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGAGA
* * * * * * *
46508614 AAATATTGTCTTATAGTAAAGACATGTACTTTTCAAATTCATTACGTCTCAAACTGGTCACAATA
295 AAATATGGTATTATAGTAAAGACATATACGTCTCAAATTCATTACGTCTCAAATTGATCACAATA
* * * * * * * *
46508679 ACCTGCAATGCCACCTCTAACAAAGTTTCTTATC-GAAAAAGCTGAAACCAATTACTATAATAAT
360 ACCTACAATGCCACCTCCAAAAAAGTCTCTTATCAGAAAAA-TTGGATCCAAATACTATAATAAT
* * * * * * *
46508743 ACAAGCAAATATGGTCATTAGTAATATAAAACCAAAACAACAGTTAACATTTTGAATAGAAAAAA
424 ACGATCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAA
* * * * * *
46508808 TTGTTATATTGTGGTTTTAGTCCCACTAATATTATTTTTCTTTTTTATTTAAAATAAGATAAATT
489 TGGTTATATTGTCGTTTTAGTCCCACTAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAAT
* * * *
46508873 CATAAGAATCTGAAAATTACACCTACGAAAATTAAACAAAAATCACAAGGCTACCTATAG
554 CATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCT-TAG
* * * * * ** *
46508933 CCTCCAAGCTCCCTCATTTCTTGCTTCAACTCACATCATCATATATCTCATATTTTTCATTATTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
** * *
46508998 ACTTATTTTTTACTCTAAAATG-TTGTGAATACAAACTCTTGCATTGTCAGCCCTTTTTATAATC
66 ACTTATTTTCGACTCTAAAATGTTTG-GAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAA-C
* * * *
46509062 -GTTGTATA-AGTGATTCTCTACCTTCTTGCACATTCTGATGTAGGAGAAAAG-TTGTTTAAAGT
129 AGCT-TATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTT-TTTAAAGT
* * ** * * * * * *
46509124 CTTTATGAGTCCATCGTATTATAGTCCTTTTATGTTACCTGTTTGGTAATTGATTCTCC-CT-TG
192 CATTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTT
* * * *
46509187 GTTATTTGTTCCTTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
257 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATAT
* ** * *
46509252 ACGTCTCAAATTCATTACGTTTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTC
322 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTC
* ** * * *
46509317 TCTTATC-GAAAAAATTGAATATAAATACTATAAGAGTACGAGCAAATA---TGATTAGTAATAT
387 TCTTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATAT
* * * * * *
46509378 AAAACCATAACAAC-GATTACCATTTTCAATATAAAAAATGGTTAGATTATGGTTTTAGTCCCTC
451 AAAACCATAACAACAG-TTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
*** * ** * *
46509442 TAATATGTTTTTTCTTCTTTTTTTTAGCATAAGACAAAATGACAAGAATC-GTAAAATTACACCT
515 TAATATAAATTTTCTT-TTTTATTTAAAATAAGACAAAATCATAAGAATCTG-AAAATTACACCT
** *
46509506 ACAAAAATTACACAAAAATCATAAGACTGCCTTTAG
578 ATGAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46509542 CCTTCAGGCTCCCTCCTTTCTTCTTTCATC-CTTCAT-ACTCCTTCATTTCTTCA-CACTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* * * * ** **** * * *
46509604 CA-AGCTCCCTACTTTATTCCTTCAACTCTCATCATCAAAT-TTCTCAGCCTTTTCATTGTTTAC
58 CATTG-T--TTAC-TTATT--TTCGA--CTC-T-A--AAATGTT-T-GGAATAGAAACT-CTTGC
** * * * * ** * **
46509667 TTATTTTC-GACTCTAAAATATTTGGAGTACAAACTCTTGTA-TG-G-TTAGC--CCTTTTTATA
108 --ATGGTCAG-CCCT----T-TTT--A-TA-ACA-GCTTATACTGCGATTCTCTACCTTCTTGCA
** * * * **** * ** * * * *** * **
46509726 -ACCGCTTATATAACGATTTTGTACCTTCTCGCACAGTCTGCTTTAGGAGAAAAGTTGT-TTAAA
160 CA-TTCTGAT-TTAGGA--GAAAAGCTT-T-TTAAAG--T-CATTATGAGTCCA-TGGTATTAGG
* * * * *
46509789 GT-CT-GTATGAGTCCATGGTATTATGGTCCTATTATG-TTC-CCTAT-TTGACAGTTGATTCCC
215 GTCCTATTATG-TTCC---CTATT-TGG--C-AGT-TGATTCTCCTCTCTT----GTT-ATT---
* * * * * *
46509849 CTATTTGGTTATTTGTTTCCTACTAATGTTTACATGTTTCTGGGGAAATATGGTATTATAGTAAA
263 -------------TGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAA
* * * * * * *
46509914 AACATGTACGTCTCAAATTCATTACTTCTTAAATTGATCACAATAACATGCAATGCCACCTCTAA
315 GACATATACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAA
* * *
46509979 AAAAGTCTCCTATC-GAAAAAATTGGATCCAAATACTATAATAATATGATTAAATATGGTGATTA
380 AAAAGTCTCTTATCAG-AAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTA
* *
46510043 GTAATATAAAACCATAACAACAGCTAGCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAG
444 GTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAG
* * * *
46510108 TCCGACTAATATAATTTTTCTTTTTTATTTAAAATAAGGCAAAATCATAAGAATATGAAAATTAC
509 TCCCACTAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTAC
* * *
46510173 ACCTATGAAAATTACGCAAAAATCACATGACTGCCTTTAA
574 ACCTATGAAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46510213 CCTTCAAGCTCCCTCATTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * *
46510278 AATTATTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGCTCAGCCCTTTATATAACTG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
*
46510343 CTTATACAT-CGATTCTC-ACACTTCTT-CTACATTCTGATTGAGGAGAAAAGCTTTTTAAAGTC
131 CTTATAC-TGCGATTCTCTAC-CTTCTTGC-ACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTC
* * * * * *
46510405 TTTATAAGTCCATGGTTTTATGGTCCTATTATGTACCCTATTTGGCAGTTGATTCTCCCCT-TTG
193 ATTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTT-
* * * *
46510469 GTTATTTGTTCCCTGTTAATATTTACATGTTTTTG-GAGAAATATGGTATTATAGTAAAGACATG
257 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGA-AAATATGGTATTATAGTAAAGACATA
* * * * * *
46510533 TACGTCT-TAA---ATTA-G--TC------A-C-C-ATAACTTGCAACGCCACCTCCAACAATGT
321 TACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGT
* * * * * *
46510582 CTCTTATCGAAAAAAATTGAATCCAAATACTATAATAATAAGAGCAAGTATGGTCATTAGTAATA
386 CTCTTATC-AGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATA
* * * *** * * *
46510647 TAAAACCATAACAACAATTAGAATTTTTAATATAAAAAACAATTTTATTGTGGTTTCAGTCCCAC
450 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAC
* * * * *
46510712 TAATATAATTTTTCTTTTTT-TCTAGAATAAGACAAAATCACAAGAATTTGAAAATTACACCTA-
515 TAATATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTAT
*
46510775 GCAAAATCACACAAAAATCACAAGACTGCCTTTAG
580 G-AAAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
46510810 TCTTCATGTTCCCTCCTTTCTTCTTTCAAC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAAC
46510840 CTTCAAACTC
Statistics
Matches: 8119, Mismatches: 1714, Indels: 1683
0.71 0.15 0.15
Matches are distributed among these distances:
594 2 0.00
595 186 0.02
596 80 0.01
597 586 0.07
598 167 0.02
599 9 0.00
600 90 0.01
601 99 0.01
602 19 0.00
603 14 0.00
604 13 0.00
605 13 0.00
606 25 0.00
607 41 0.01
608 255 0.03
609 144 0.02
610 106 0.01
611 661 0.08
612 915 0.11
613 1075 0.13
614 78 0.01
615 181 0.02
616 46 0.01
617 42 0.01
618 22 0.00
619 16 0.00
620 29 0.00
621 30 0.00
622 24 0.00
623 20 0.00
624 208 0.03
625 64 0.01
626 17 0.00
627 19 0.00
628 31 0.00
629 27 0.00
630 17 0.00
631 20 0.00
632 24 0.00
633 52 0.01
634 56 0.01
635 49 0.01
636 65 0.01
637 51 0.01
638 60 0.01
639 58 0.01
640 36 0.00
641 100 0.01
642 224 0.03
643 42 0.01
644 48 0.01
645 58 0.01
646 68 0.01
647 44 0.01
648 28 0.00
649 20 0.00
650 28 0.00
651 22 0.00
652 28 0.00
653 25 0.00
654 12 0.00
655 64 0.01
656 55 0.01
657 6 0.00
658 7 0.00
659 7 0.00
660 131 0.02
661 26 0.00
662 17 0.00
663 95 0.01
664 43 0.01
665 185 0.02
666 150 0.02
667 77 0.01
668 107 0.01
669 164 0.02
670 19 0.00
671 203 0.03
672 97 0.01
673 24 0.00
674 12 0.00
675 15 0.00
676 10 0.00
677 10 0.00
678 6 0.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (612 bp):
CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACAG
CTTATACTGCGATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAGTCATT
ATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTTGTTA
TTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATACGT
CTCAAATTCATTACGTCTCAAATTGATCACAATAACCTACAATGCCACCTCCAAAAAAGTCTCTT
ATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAAC
CATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATAT
AAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAAT
TACACAAAAATCACAAGACTGCCTTAG
Found at i:46502169 original size:611 final size:611
Alignment explanation
Indices: 46499561--46514003 Score: 8502
Period size: 612 Copynumber: 23.0 Consensus size: 611
46499551 CTTCACTTCT
* * * *
46499561 CCTTTAAGCTCCCTACTTTCTCCCTT-AACCTCTCATCATCATATTTCTTATCCTTTTCATTGTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAA-CTCTCATCATCATATTTCTCATCCTTTTCATTGTT
* * * * * * *
46499625 TACTTATTTTCGACTCTAAAATGTTTGGAATAAAAACGCTTGCATGGTTAG-CCTTTTTTATATC
65 TACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACC-TTTTTATAAC
* * * * * * *
46499689 TGCTTATATAGTGATTTTGTACCTTCTCGCACATTCTGCTTTAGGAGAAAAATTGTTTAAAGTCT
129 AGCTTATACAGTGATTCT-CACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTCT
* * *
46499754 TTATGAGTCCACGGTATTATGGTCATATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTT-G
193 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCT-TTGG
**** *
46499818 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTAAAAAAATATGGTATTATAGTAAAGACATATA
257 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * * * * * *
46499883 AGTCTCAAATTCATTACTTCCCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCT
322 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* *
46499948 CTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
387 CTTATC-GAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* *
46500013 AACAATAACAACAGTTAGCATTTTAAATAT-AAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
451 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* *
46500077 TATAATTTTTCTTGTTTATTTAAAATAAGACAAAATCATAAGAATCTAAAAATTACACCTATGAA
516 TATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
*
46500142 AATTACACAAAAATAACAAGACTGCAC-TTAG
581 AATTACACAAAAATCACAAGACTGC-CTTTAG
* * *
46500173 CCTTCAAGCTCCCTTCTTTCTTCTTTCAAATCTCATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
** * * * *
46500238 ACTAATTTTCGACTCTAAAATGTCTT-GAATAGAAACTCTTGCATTGTCAGCCCTTTTTATAGCC
66 ACTTCTTTTAGACTCTAAAATGT-TTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACA
* * * *
46500302 GCTTATACTGCGATTCTCTACCTTCTTGCACATTCTAATTTAGGAGAAAAGCTT-TTTAAAGTCA
130 GCTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGTCT
* *
46500366 TTATGAGTCCATGGTATTAGGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTT-G
193 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCT-TTGG
* * *
46500430 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGACATATA
257 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * * *
46500495 CGTCTCAAATTCATTACGTCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCT
322 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* *
46500560 CTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
387 CTTATC-GAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
*
46500625 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
451 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
*
46500690 TATAGTTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
516 TATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
* *
46500755 AATTACACAAAAATAACAAGACTACAC-TTAG
581 AATTACACAAAAATCACAAGACTGC-CTTTAG
*
46500786 CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * *
46500851 ACTTATTTTCGACTCTAAAATGTTTTGAATAGAAACTCTTGCATTGTCAGCCCTTTTTATAGCAG
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACAG
* * * *
46500916 CTTATACTGCGATTCTCTACCTTCTTGCACATTCTAATTTAGGAGAAAAGCTT-TTTAAAGTCAT
131 CTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGTCTT
* *
46500980 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTCTGATT
194 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* *
46501045 ATCTGTTCCCTGCTAATATTTACACGTTTTTGGGGGAAATATGGTA-T-T-GT--AG---TG-A-
259 ATTTGTTCCCTGCTAATGTTTACACGTTTTT-GGGGAAATATGGTATTATAGTAAAGACATGTAC
46501100 -----AAA--CATGTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAA-AAAGTCT
323 GTCTCAAATTCAT-TACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* *
46501157 CTTATCGAAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAA
387 CTTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * * * * * * *
46501222 AGCCATAACAACAGTGAGAATTTTCAGTATAAAAAATGTTTATATAGTCGTTTTAGTCCCATTAA
451 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* * * * * *
46501287 TAAAAATTTTCCTTTTTACTTAAAATAAGATAAAATCATAAGAATCAGAAAATTACACCTATGAA
516 TATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
46501352 AATTACACAAAAATCACAAGACTG-CTTTCAG
581 AATTACACAAAAATCACAAGACTGCCTTT-AG
* *
46501383 CCTTAAAGCTCCCTCCATTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATCT-TT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCAT-TGTT
* * * * *
46501447 TACTTATTTCT-GACTCTAAAAAGTTTGGAATTGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
65 TACTTCTTT-TAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAAC
* * * * * *
46501511 CGTTTATACA-TCAATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTC
129 AGCTTATACAGT-GATTC-TCACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTC
* *
46501575 TTTATGAGTCCATGGTATTGTGGTCCTATTATGTTCCTTATTTGGCAGTTGATTCTCCTCTTTGG
192 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* *
46501640 TTATTTGTTCCCAGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAG-AATGACATGTA
257 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * * *
46501704 CGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCACCTTCAAAAAAGTCT
322 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* * *
46501769 CTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATCAGTAATATAA
387 CTTATC-GAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
*
46501834 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
451 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* *
46501899 TATAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCAATGAA
516 TATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
* * * *
46501964 AATTA-AAAAAAATCACATGATTGCCTTTAA
581 AATTACACAAAAATCACAAGACTGCCTTTAG
* * **
46501994 CCTTCAAGCTCCCTCCTTTTTTCCTTCAACTCTCATCATCATATTTCCCATCCTTCCCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * *
46502059 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAGCTTTTGCATGGTCAGACCTTTTTATAACAA
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACAG
* * * *
46502124 CTTATACAGTGATTCTCACACTTTTTGCACATTCTGATTTAGGAGAAATGCTT-TTTCAAGTCAT
131 CTTATACAGTGATTCTCAC-CTTCTTGCACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGTCTT
* * * * * * *
46502188 TATGACTTCATGCTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATT-TCCGCTTTGGTT
194 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* * * * *
46502252 TTTTGTTCCCTGCTAATATTTACACTTTTTTTTGAGAAATATGGTATTATAGTAAAGACATGTAC
259 ATTTGTTCCCTGCTAATGTTTACAC-GTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTAC
* *
46502317 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGTCGC
323 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
* * * *
46502382 TTATTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATAA
388 TTATCG--AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * * * * * *
46502447 AACGATAACAGCAATTAGAAATTTT-AATATAAAAAATAGTTTTATTCTAGTTTTAGTCCCACTA
451 AACCATAACAACAGTTAG-CATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
* * * * * **
46502511 ATATAAATGTTCTTTTTT-TCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACAA
515 ATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA
*
46502575 AAATTACACAAAAATCACAAGACTACCTTTAG
580 AAATTACACAAAAATCACAAGACTGCCTTTAG
* * * * * * * * *
46502607 TCTTCACGTTCCCTCATTTCTT-CTGTCAAC-CTTCA-AACTCCCTCCTTTCTTCACTTCTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCT-TCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTT
* * * ** * *** *****
46502669 CA-AGCTCCCTACTTTCTCCCTTA-ACCTTTCATCATCATATTTCTTAT-CCTTTTCGTTGTTTA
58 CATTG-T--TTAC-TTCT--TTTAGA-C--TC-T-AAAATGTTTGGAATAGAAACTC-TTG----
* * * * * * **
46502731 ATTATTTTC-GACTCTAAAATGTTTGGAATAGA-AACTCT-TACA-TG-GTC-AAGCTT-TTTTA
107 --CATTGTCAGAC-CT----T-TTT---ATA-ACAGCT-TATACAGTGATTCTCACCTTCTTGCA
* ** * * * *** * * * * * *** *
46502789 TAACCT-CTTATA-AAGCGATTCTCTACCGTCTCGCACATTCTACTTCAAGGGAAAAGTTGT-TT
159 CATTCTGATT-TAGGAG-AAAAGT-T---GT-T--TAAAGTCT--TT-ATGAGTCCA-TGGTATT
** * * * ** * *
46502851 AAAGT-CT-TTATGAGTCCATGGTATTATGGTCCTATTCTG-TTC-CCTAGTTGG-CAGTTGATT
211 ATGGTCCTATTATG-TTCC---CTATT-TGG--C-AGT-TGATTCTCCTCTTTGGTTATTTG--T
* * * * ** **** * * *
46502911 CTCCTCTTTGGTTAT-TTGTTCCCAGCTAATGTTTACATGTTTCTAGGGAAATATGATATTATAG
265 -TCC-C--TGCTAATGTT-TACAC-G-T--T-TTT--GGGGAAATATGG---TATTATAGTA-A-
* * * * * *
46502975 TAAAGACAGTACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCACCTT
313 -AGACA-TGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTC
* * * * *
46503040 CAAAAAAGTCTCTTACCGGAAAAATTGGATCCAAATACTATAATAATATGATCAAATATGGTGAT
376 CAACAAAGTCTCTTATC-GAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGAT
* * **
46503105 CAATAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCATTTT
440 TAGTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTT
*
46503170 AGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGATAAAATCATAAGAATCTGAAAATT
505 AGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATT
* * *
46503235 ACACCTATGAAAATTAGA-AAAAATCACATGACTGCCTTTAA
570 ACACCTATGAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46503276 CCTTCAAGCTCCCTCCTTTTTTCCTTCTACTCTCATCATCATATTTCTCATCCTTCTCATTGTTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * *
46503341 ACTTCTTTTAGACTCTAAAATGTTTGGAATA-AAAGCTCTTACA-TGTTCAGGCTTTTTTATAAC
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAA-CTCTTGCATTG-TCAGACCTTTTTATAAC
* * * * * *
46503404 CGCTTATAAAGCGATTCTCTACCGTCTCGCACATTCT-ACTTCAAGG-GAAAAGTTGTTTAAAGT
129 AGCTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGA-TT-TAGGAGAAAAGTTGTTTAAAGT
* * * * * *
46503467 CTTTATGAGTCCATGGTATTATGGTCTTATTCTATTCCCTATTTGGCAGTTGATTCTCCACTCTA
191 CTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTG
* * *
46503532 GTTATTTGTTCCCTTG-TAATGTTTACACGTTTATGGGGAAATATTGTCTTATAGTAAAGACATG
256 GTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATG
* * * * * *
46503596 TACTTCTCAAATTCATTACGTCTCAAACTGGTCACAATAACCTACAATTCCACCTCTAACAAAGT
320 TACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGT
* *
46503661 CTCTTATCGAGAAAGTTGAATCCAAATACTATAATAATAC-AGGCAAATATGGTCATTAGTAATA
385 CTCTTATCGA-AAAATTGAATCCAAATACTATAATAATACGA-GCAAATATGGTGATTAGTAATA
* * * * * * * * *
46503725 TAAAATCAAAAAAATAGTTAGCATTTTGAATAGAAAAAACGGTTATATTATGGTTTTAGCCCCAC
448 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCAC
* *
46503790 TAATATTATTTTTCTTTTTTATTTAAAATAAGA-TAAATACATAAGAATCTGAAAATTACACCTA
513 TAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAAT-CATAAGAATCTGAAAATTACACCTA
* * * * * * * * *
46503854 CGAAATTTAAATAAATATGACAAGGCTACCTGTAG
577 TGAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * * * *
46503889 CCTTCAAGTTCCCTCATTTCTTCCTTCAACTCACATCATCATATATCTCATCTTTTTCATTCTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * * *
46503954 ACTTATTTTCGACTCTAAAATTTTTTGAATACAAACTCTTGCATTGTCAGTCCTTTTTATAACCG
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACAG
* * * *
46504019 CTTATACAGCGATTCTCTACCTTCTCGTACATTCTGATATAGGAGAAAAGTTGTTTAAAGTCTTT
131 CTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTCTTT
* * * *
46504084 ATAAGTCCATGGTATTATAGTCCTTTTATGTTCCCTATTTGGTAGTTGATTCTCC-C-TTGGTTA
195 ATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTTA
* * * * *
46504147 TTTTTTCCTTGCTAATGTTTATACGTTTTTTGAGAAATATGGTATTATAGTAAAGACATGTACGT
260 TTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGT
* * * * *
46504212 CTCAAATTCATTACGTCTCAAATTGATCACAATAACTTGTAATGCCACCGCCAACAAACTCTCGT
325 CTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCTT
** * *
46504277 ATCGAAAAAATTGAATATAAATACTATAAGAATACGAGCAAATA---TGATTGGTAATATAAAAC
390 ATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAAC
* * * * *
46504339 CATAACAACAATTACCATTTTAGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTCATAT
454 CATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATAT
* * * * *
46504404 AA------TTTTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACGCCTA-CACAAA
519 AATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA-AAA
*
46504461 TTACATAAAAATCACAAGACTGCCTTTAG
583 TTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46504490 CCTTCAAGCTCCCTCCTTTCTTCTTTCATC-CTTAAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
** * * * ** ** **** * *
46504552 CAAGCTCCCAACTTTA-TTCCTTCA-ACTCT--CAT-CATCAAATTTCTCACCCTTTTCATTGT-
58 C-A--T----TGTTTACTTCTTTTAGACTCTAAAATGTTTGGAA-TAGAAACTC-TTGCATTGTC
** * * * ** * * ** * * *
46504611 TTACTTATTTTCGACTCTAA-AG-TGTTTGGCA-TAGAAACTCTTCGATGGTTAGCCCTTTTTAT
114 AGACCT-TTTT--A---TAACAGCT-TAT-ACAGT-GATTCTC-AC-CTTCTT-GCAC--ATTCT
* * * ** * * *** * **
46504673 AACTGCTTA-TATAACGATTTTGTACCTTCTCCACAGTCTGCTTTAGGAGAAAAGTTGT-TTAAA
165 GA-T--TTAGGAGAA--AAGTTG----TT-T--AAAG--T-CTTTATGAGTCCA-TGGTATTATG
* * * * ** * *
46504736 GT-CT-TTTTGAGTCCATGGTATTATGGTCCTATTATG-TTC-CCTAGTTGG-CAGTTGATTCTC
214 GTCCTATTATG-TTCC---CTATT-TGG--C-AGT-TGATTCTCCTCTTTGGTTATTTG-TTC-C
* * *** **** ** * * ** * * *
46504796 CT-CT-TTGGTTATTTGTTCCCAGCTAATGTTTACAT-GT-TTCTAGGGAA-ATATGGTA-TTAT
268 CTGCTAATGTTTACACGTTTTTGGGGAA-----ATATGGTATTATAGTAAAGACAT-GTACGTCT
* ** *
46504855 AGTAAAGACATGTACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCAC
327 --CAAATTCAT-TACG----------------TCTCAAATTGATCACAATAACCTGCAATGCCAC
* * * * *
46504920 CTTCAAAAAAGTCTCTTACCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATA---T
373 CTCCAACAAAGTCTCTTATC-GAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGT
* **
46504982 G-TT-G----AT----CAATAACAACAGTTAGCATTTTAAATAT-AAAAATGGTTATATTGTCAT
437 GATTAGTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGT
* *
46505036 TTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGATAAAATTATAAGAATCTGAAA
502 TTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAA
* * *
46505101 ATTACACCTATGAAAATTAGA-AAAAATCACATGACTGCCTTTAA
567 ATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46505145 CCTTCAAGCTCCCTCCTTTTTTCCTTCTACTCTCATCATCATATTTCTCATCCGTCTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * *
46505210 ACTTCTTTTAGACTCTAAAATGTTTGGAATA-AAAGCTTTTGCATGGTCAAACCTTTTTATAACT
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAA-CTCTTGCATTGTCAGACCTTTTTATAACA
* * *
46505274 GCTTATACAGTGATTCTCACACTTCTTGCACATTCTGATTTAGGAGAAATGCTT-TTTCAAGTCA
130 GCTTATACAGTGATTCTCAC-CTTCTTGCACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGTCT
* * * * * *
46505338 TTATGACTTCATGGTTTTACGGTCCTATAATGTACCCTATTTGGCAGTTGATT-T-CTGCTTTGG
193 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCT-CTTTGG
* * * * *
46505401 TTTTTTGTGCCCTGCTAATATTTACACGTTTTTGGAGAAATATGGTATTTTAGTAAAGACATGTA
257 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* *
46505466 CGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGTCT
322 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* * * *
46505531 CTTATTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATA
387 CTTATCG--AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATA
* * * * * * * * * *
46505596 AAACGATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTGCCACTA
450 AAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
* * * * *
46505661 ATATAAATTTTCTTTTTT-TCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGA
515 ATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA
46505725 AAATTACACAAAAATCACAAGACTGCCTTTAG
580 AAATTACACAAAAATCACAAGACTGCCTTTAG
* * * * * * * * *
46505757 TCTTTAAGTTCCCTCATTTCTTCTTTCAAC-CTTCA-AACTCCCTCTTCACTTC-TCC--TTCA-
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CATATT-TC-TCATCCTTTTCAT
* * * * * * * ** * *
46505816 AGCTCCCTACTTTCTCCCTTA-ACCTCTTATCATCATATTT---CT-TATCCT-TTTCATTGT-T
61 TG-T--TTAC-TTCT--TTTAGA-CTC-TA--A-AATGTTTGGAATAGAAACTCTTGCATTGTCA
* * * * * ** * * * ** *** *
46505874 TACTTATTTTCGACTCTAAAATGTTTGGA-ATAGAAACTCTTACATGGTCAGGCTTTTTTATAAC
115 GACCT-TTTT--A---TAACA-GCTT--ATACAGTGATTCTCACCT--TCTTGC-ACATTCT---
* * * *** * * * * * *** * *
46505938 CACTTATA-AAGCGATTCTCTACCGTCTCGCACATTCTACTTCAAGGGAAAAGTTGT-TTAAGGT
165 GA-TT-TAGGAG-AAAAGT-T---GT-T--TAAAGTCT--TT-ATGAGTCCA-TGGTATTATGGT
* * * * * *
46506001 -CT-TTATGAGTCCATGGTATTATGGTC--CT-ATTCTGTTCCCTATTTGG-CAGTTGATTCTCC
216 CCTATTATG-TTCC---CTATT-TGG-CAGTTGATTC---T-CCTCTTTGGTTATTTG--T-TCC
* * * *** * * ** * **
46506060 ACT-CTAGTTAT-TTGTTC-CCTTATAATGTTTACACGTTTATGGGGAAATATTGTCTTATAGTA
268 -CTGCTA---ATGTT-TACACGTT-T-TTGGGGA-A---ATAT--GG---TATTATAGTAAAGAC
* * * ** * * *
46506122 AAG-ACATGT-ACTTCTCAAATTCATTACGTCTCAAACTGGTCACAATAACCTGCAATGCCGCCT
317 ATGTACGTCTCAAAT-T------CATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCT
* *
46506185 CCAACAAAGTCTCTTATCGAAAAAGTTGAATCCAAATACTATAATAATAC-AGGAAAATATGGTC
375 CCAACAAAGTCTCTTATCGAAAAA-TTGAATCCAAATACTATAATAATACGA-GCAAATATGGTG
* * * * * **
46506249 ATTAGTAATATAAAACAAAAAAAAAACAGTTAGCATTTTGAATAGAAAAAACAGTTATATTGTGG
438 ATTAGTAATATAAAAC--CATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGG
* * * * *
46506314 TTTTAGCCCCACTAATATTATTTTTCTTTTTTATTTAAAATAAGATAAATTCATAAGAATATGAA
501 TTTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAA
* * * * * * * *
46506379 AATTACTCCTACGAAATTTAAACAAATATGACAAGGCT-ACTTATAG
566 AATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCTT-TAG
* * * * * *
46506425 CCTTCAAGTTCCCTCATTTCTTCCTAT-AACTCACATCATCATATATCTCATCTTTTTCATTCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCT-TCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTT
* * * * *
46506489 TACTTAC-TTTCGACTCTAAAATGTTTTGAATACAAACTCTTGCATTGTCAGTCCTTTTTAAAAC
65 TACTT-CTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAAC
* * * * * *
46506553 CGCTTATACAGCGATTCTCTACCTTCTCGCACATTCTGATATAGGAGAAAAGCTGTTTAAAGCCT
129 AGCTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTCT
* * * * *
46506618 TTATGAGTCCATGGTATTATAGTCTTTTTATGTTCCCTACTTGGTAGTTGATTCTCC-C-TTGGT
193 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGT
* * * * *
46506681 TATTTGTTCCTTGCTAATGTTTTCAAGTTTTTGGAGAAATATGGTATTATAGTAAAGGCATGTAC
258 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTAC
* * *
46506746 GTCTCGAATTCATTACGTCTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTCTC
323 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
** * * *
46506811 TTATCGAAAAAATTGAATATAAATACTATAAGAATATGAGCAAATA---TGATTGGTAATATAAA
388 TTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
* * * *
46506873 ACCATAACAACAATTACCATTTTAGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTAAT
452 ACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * * *
46506938 ATAA-------TTTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACACCTA-CACA
517 ATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA-A
46506994 AATTACACAAAAATCACAAGACTGCCTTTAG
581 AATTACACAAAAATCACAAGACTGCCTTTAG
** * *
46507025 CCTTCAAGCTCCCTCCTTTCTTTTTTCATGCT-TCAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCA-ACTCTCATCA-T-CAT-ATTTC-TCATC-CTT--TT
** * * * * **** * *
46507087 CAAGCTCCCAACTTTA-TTCCTTCA-ACTCTCATCATCAAAT-TTCT-CACCCTTTTCATTGTTT
58 C-A--T----TGTTTACTTCTTTTAGA--CTC-T-A--AAATGTT-TGGA--ATAGAAACT-CTT
* * * * * * * *
46507148 ACTTATTTTC-GACTCTAAAATGTTTGGCATAGA-AACTTTTCCATGGTTAGCCCTTTTTATAAC
106 GC--ATTGTCAGAC-CT----T-TTT---ATA-ACAGCTTATACA--G-T-G-----ATTCTCA-
* * * *** * *
46507211 CGCTTATAT-AACGATTCTGTACCTT-CTCGCACAGTCTGCTTTAGGAGAAAAGTTGTTTAAAGT
149 C-CTTCT-TGCAC-ATTCTG-A-TTTAGGAGAAAAG------------------TTGTTTAAAGT
* * *
46507274 CTTTTTGAGTCCATGGTATTATGGTCCTATTATGTTCCCTTTTTGGCAGTTGATTCTCCTATTTG
191 CTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTG
* ** * *
46507339 GTTATTTGTTTCCTGCTAATGTTTACATATTTCTAGGGAAATATGGTATTATAGTAAAGACATGT
256 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
* * * *
46507404 ACGTCTCAAATTCATTACTTCTTAAATTGATCACAATAACCTGCAATGCCACCTCCAAAAAAATC
321 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTC
* * *
46507469 TCCTT-TCGAAAAAATTGGATCCAAATACTATAATAATACGATCAAGTATGGTGATTAGTAATAT
386 T-CTTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * * *
46507533 AAAACCATAACAACAGTTATCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCAGT
449 AAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * *
46507598 AATATAATTTTTCTTTTTTATTTAAAAGAAGACAAAATCATAAGAATCTGGAAAGTAC-CCTTAT
514 AATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACC-TAT
* * *
46507662 GAAAATTACACAAAAATCACATGACTACCTTTAA
578 GAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46507696 CCTTTAAGCTCCCTCCTTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * **
46507761 AATTGTTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGGTCA-ACCCTTTTTATAATT
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGA-CCTTTTTATAACA
* * * *
46507825 GCTTATACAGTGATTCTCTACCTTCTTGTACATTTTGATTTAGGAGAAAAGCTT-CTTAAAGTCA
130 GCTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGTCT
* * * *
46507889 TTATGAGTCCATGGTTTTATGGTCCTATTATGTACCTTATTTGGCAGTTGATTCTCCTTTTTGGT
193 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGT
* * * * * *
46507954 TATTT-TTTCCTGTTAATATTCACACGTTTTTAGAGAAATATGGTATTATAGTAAAGACA--T--
258 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTAC
* *
46508014 G--T---A--C---A--TCTCAAATTGATCACCATAACCTGCAATGCCACCTCCAACAATGTCTC
323 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
** * * *
46508067 TTATAAAAAAATTGAATCCAAATACTATAATAATACGAGAAAATATGATAATTAGTAATATAAAA
388 TTATCGAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAA
* * * * ** * *
46508132 CCATAAAAATAATTAGAATTTTTAAA-ATAAAAAACAGTTTTATTGTGGTTTTAGTCCTACTAAT
453 CCATAACAACAGTTAGCA-TTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * *
46508196 ATAAATTTTCTTTTTT-TTCTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAA
517 ATAATTTTTCTTTTTTATT-TAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
46508260 AATTACACAAAAATCACAAGACTGCCTTTAG
581 AATTACACAAAAATCACAAGACTGCCTTTAG
* *
46508291 TCTTCATGTTCCCTCCTTTCTTCACTCCTTCTTCAAGCTCCCTACTTTCTCCTTTAACCTCTCAT
1 CCTTCAAG----CTCC---C-TC-CT--TTC-T-----T--C--C--T-T-C---AA-CTCTCAT
* * * * *
46508356 CGTCATATTTCTTATCCTTTTCACTGTTTACTTATTTTATACTCTAAAATGTTTGGAATAGAAAC
37 CATCATATTTCTCATCCTTTTCATTGTTTACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAAC
* * * * * * **
46508421 TCTTACATGGTCAG-CCTTTTTTATAACCGCTTATAAAGCGATTCTCTACCGTCTCACACATTCT
102 TCTTGCATTGTCAGACC-TTTTTATAACAGCTTATACAGTGATTCTC-ACCTTCTTGCACATTCT
* * * *
46508485 GCTTCAGGAGAAAACTTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCCTATTCTGTTCCC
165 GATTTAGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCC
* * *
46508550 TATTTAGCAGTTGGTTCTCCTCTCTGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGGG
230 TATTTGGCAGTTGATTCTCCTCTTTGGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGGG
* * * * * *
46508614 AAATATTGTCTTATAGTAAAGACATGTACTTTTCAAATTCATTACGTCTCAAACTGGTCACAATA
294 AAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATA
* * * * *
46508679 ACCTGCAATGCCACCTCTAACAAAGTTTCTTATCGAAAAAGCTGAAACCAATTACTATAATAATA
359 ACCTGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAA-TTGAATCCAAATACTATAATAATA
* * * * * *
46508744 CAAGCAAATATGGTCATTAGTAATATAAAACCAAAACAACAGTTAACATTTTGAATAGAAAAAAT
423 CGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAAT
* * * *
46508809 TGTTATATTGTGGTTTTAGTCCCACTAATATTATTTTTCTTTTTTATTTAAAATAAGATAAATTC
488 GGTTATATTGTGGTTTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATC
* * * * *
46508874 ATAAGAATCTGAAAATTACACCTACGAAAATTAAACAAAAATCACAAGGCTACCTATAG
553 ATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * * * ** *
46508933 CCTCCAAGCTCCCTCATTTCTTGCTTCAACTCACATCATCATATATCTCATATTTTTCATTATTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* ** * *
46508998 ACTTATTTTTTACTCTAAAATG-TTGTGAATACAAACTCTTGCATTGTCAGCCCTTTTTATAATC
66 ACTTCTTTTAGACTCTAAAATGTTTG-GAATAGAAACTCTTGCATTGTCAGACCTTTTTATAA-C
* *
46509062 -GTTGTATA-AGTGATTCTCTACCTTCTTGCACATTCTGATGTAGGAGAAAAGTTGTTTAAAGTC
129 AGCT-TATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTC
* * * * * * *
46509125 TTTATGAGTCCATCGTATTATAGTCCTTTTATGTTACCTGTTTGGTAATTGATTCTCC-C-TTGG
192 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
*
46509188 TTATTTGTTCCTTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
257 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * *
46509253 CGTCTCAAATTCATTACGTTTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTCT
322 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
** * *
46509318 CTTATCGAAAAAATTGAATATAAATACTATAAGAGTACGAGCAAATA---TGATTAGTAATATAA
387 CTTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * * *
46509380 AACCATAACAAC-GATTACCATTTTCAATATAAAAAATGGTTAGATTATGGTTTTAGTCCCTCTA
451 AACCATAACAACAG-TTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
** * ** * * *
46509444 ATATGTTTTTTCTTCTTTTTTTTAGCATAAGACAAAATGACAAGAATC-GTAAAATTACACCTAC
515 ATATAATTTTTCTT-TTTTATTTAAAATAAGACAAAATCATAAGAATCTG-AAAATTACACCTAT
* *
46509508 AAAAATTACACAAAAATCATAAGACTGCCTTTAG
578 GAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46509542 CCTTCAGGCTCCCTCCTTTCTTCTTTCATC-CTTCAT-ACTCCTTCATTTCTTCA-CACTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* * * * ** **** * * *
46509604 CAAGCTCCCTACTTTA-TTCCTTCA-ACTCTCATCATCAAAT-TTCTCAGCCTTTTCATTGTTTA
58 C-A--T---T-GTTTACTTCTTTTAGA--CTC-T-A--AAATGTT-T-GGAATAGAAACT-CTTG
* * ** * ** *
46509666 CTTATTTTC-GACTCTAAAATATTTGGAGT-ACAAACTCT-TGTA-TGGTTAGC-CCTT-TT-TA
107 C--ATTGTCAGAC-CT----T-TTT--A-TAAC-AGCT-TATACAGTGATTCTCACCTTCTTGCA
* * * * ** *** ** * * *** *
46509724 TA-ACCGCTTATATAACGATTTTGTACCTTCTCGCACAGTCTGCTTTAGGAGAAAAGTTGT-TTA
159 CATTCTGATT-TAGGA-GA-AAAGT-TGTT-T---AAAG--T-CTTTATGAGTCCA-TGGTATTA
** * * * *
46509787 AAGT-CT-GTATGAGTCCATGGTATTATGGTCCTATTATG-TTC-CCTATTTGACAGTTGATTCC
212 TGGTCCTATTATG-TTCC---CTATT-TGG--C-AGT-TGATTCTCC----T-------------
* * * *
46509848 CCTATTTGGTTATTTGTTTCCTACTAATGTTTACATGTTTCTGGGGAAATATGGTATTATAGTAA
251 -C--TTTGGTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAA
* * * * *
46509913 AAACATGTACGTCTCAAATTCATTACTTCTTAAATTGATCACAATAACATGCAATGCCACCTCTA
313 AGACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCA
* * * * **
46509978 AAAAAGTCTCCTATCGAAAAAATTGGATCCAAATACTATAATAATATGATTAAATATGGTGATTA
378 ACAAAGTCTCTTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTA
* * *
46510043 GTAATATAAAACCATAACAACAGCTAGCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAG
442 GTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAG
* * *
46510108 TCCGACTAATATAATTTTTCTTTTTTATTTAAAATAAGGCAAAATCATAAGAATATGAAAATTAC
507 TCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTAC
* * *
46510173 ACCTATGAAAATTACGCAAAAATCACATGACTGCCTTTAA
572 ACCTATGAAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46510213 CCTTCAAGCTCCCTCATTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * *
46510278 AATTATTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCA-TGCTCAGCCCTTTATATAACT
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTG-TCAGACCTTTTTATAACA
*
46510342 GCTTATACA-TCGATTCTCACACTTCTT-CTACATTCTGATTGAGGAGAAAAGCTT-TTTAAAGT
130 GCTTATACAGT-GATTCTCAC-CTTCTTGC-ACATTCTGATTTAGGAGAAAAG-TTGTTTAAAGT
* * * *
46510404 CTTTATAAGTCCATGGTTTTATGGTCCTATTATGTACCCTATTTGGCAGTTGATTCTCCCCTTTG
191 CTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTG
* * * *
46510469 GTTATTTGTTCCCTGTTAATATTTACATGTTTTTGGAGAAATATGGTATTATAGTAAAGACATGT
256 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
* * * *
46510534 ACGTCT-TAA---ATTA-G--TC------A-C-C-ATAACTTGCAACGCCACCTCCAACAATGTC
321 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTC
* * *
46510583 TCTTATCGAAAAAAATTGAATCCAAATACTATAATAATAAGAGCAAGTATGGTCATTAGTAATAT
386 TCTTATCG--AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * * *** * *
46510648 AAAACCATAACAACAATTAGAATTTTTAATATAAAAAACAATTTTATTGTGGTTTCAGTCCCACT
449 AAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * *
46510713 AATATAATTTTTCTTTTTT-TCTAGAATAAGACAAAATCACAAGAATTTGAAAATTACACCTA-G
514 AATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATG
*
46510776 CAAAATCACACAAAAATCACAAGACTGCCTTTAG
579 -AAAATTACACAAAAATCACAAGACTGCCTTTAG
* * * * * * * *
46510810 TCTTCATGTTCCCTCCTTTCTTCTTTCAAC-CTTCA-AACTCCCTCCTTTCTTCACTCCTCCTTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTTC
* * * * **** **** * * *
46510873 A-AGATCCCTACTTTCTCCCTTA-ACCTCTCATCATCATATTTCTTATCCTTTTTATTGTTTACT
59 ATTG-T--TTAC-TTCT--TTTAGA-CTCT-A--A--A-ATGT-TTGGAATAGAAACT-CTTGC-
* * * *
46510936 GATTTTC-GACTCTAAAATGTTTGGAATAGA-AACTCT-TACATGGTCAGCCCTTTTCATAACC-
108 -ATTGTCAGAC-CT----T-TTT---ATA-ACAGCT-TATACA--GT--G----ATTC-TCACCT
** ** *** * * * * *
46510997 TCTTATA-AAGC-GATTCTCTACCGTCTCACACATTCTGCTTCAAGAGAAAAGTTGTTTA-AAGT
152 TCTTGCACATTCTGA-T-T-TA--G-GAGA-AAAGT-TG-TT------TAAAG-TCTTTATGAGT
* * ** * * * * *
46511059 CGTTATGAGT-CTATGGTATTATGGTCCTATTTTGTTCCCTATTTGGCATTTGATTCTCCACTCT
201 C--CATG-GTATTATGGTCCTAT--T-AT-GT----TCCCTATTTGGCAGTTGATTCTCCTCTTT
* *
46511123 GGTTATTTGTTCCCTTG-TAATGTTTACATG-TTTTGGGGAAATATTGTATTATAGTAAAGACAT
255 GGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAT
* * * *
46511186 GTACTTCTCAAATTCATTACGTCTCAAATTGGTCACAATAACCTGGAATGCCACCTCCAACAATG
319 GTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAG
* * * * * * *
46511251 TCTCTTATTGAAAAAGCTGGATCCAAATGCTATAATAATATGAGCAAATATGGTGATCAATAATA
384 TCTCTTATCGAAAAA-TTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATA
* ** * * ***
46511316 TAAAACCAAAACAACAGTTAGCATTTGGAATAGAAAGAATGGTTATATTGTGGTTTTAGTCTGTC
448 TAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCAC
* * * *
46511381 TAATATTATTTTTCCTTTTTGTTTAAAATAAGATAAAATCATAAGAATTCT-AAAATTACACCTA
513 TAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAA-TCTGAAAATTACACCTA
* * * * *
46511445 CGAAAATTAAACAAAAAATCACTAGGCTACCTTTAG
577 TGAAAATTACAC-AAAAATCACAAGACTGCCTTTAG
* * * * ** * * *
46511481 CCTTCAGGCTCCCTCCTTTCTTCTTTCAATTCACATCATCATAGCTCTTATCTTTTTCATTATTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * ** * * *
46511546 ACTTATTTTCGCCTCTAAAATGTTCT-GAATACAAACTCTCACATTGTCAGCCCTTTTTCTAACC
66 ACTTCTTTTAGACTCTAAAATGTT-TGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACA
** * * *
46511610 GCTTATGTAGTGATTCTCTACCTTCTCGCACATTCTAATTTAGGAGAAAAGCTGTTTAAAGTCTT
130 GCTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTCTT
* * ** *
46511675 TATGAGTCCATGGTATTATAGTCCTTTTATGTTCTTTATTTGGTAGTTGATTCT-C-CTTTGGTT
194 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* * *
46511738 ATTTGTTCCCTGCTAATGTTTACACGGTTTTGGGGAAATATGGGATTATAGTAAAGAGATGTACG
259 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACG
* * * * * ** *
46511803 TCTCAAATTTAGTACATCTAAAATTGATAACAATAACCTATAATGCCATCTCCAACAAAGTCTCT
324 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCT
** * ***
46511868 TATTAAAAAAAATGAAGATAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAA
389 TA-TCGAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAA
* * * * * * *
46511933 CCATAACAACAATTAACATTTTCAATATAAAAAATGGTTAGATTGTGGTTTTACTCTCGCTAATA
453 CCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATA
* * *
46511998 TAATTTTTCTTTTTTTTTTAAAAATAAGACAAAAT-AGCAATAATCTGAAAATTACACCTATGAA
518 TAATTTTTCTTTTTTATTT-AAAATAAGACAAAATCA-TAAGAATCTGAAAATTACACCTATGAA
46512062 AATTACACAAAAATCACAAGACTGCCTTTAG
581 AATTACACAAAAATCACAAGACTGCCTTTAG
* * * * *
46512093 CCTTCAAGCTCCCTCATTTCTTCTTTCAAC-CTTCA-AATTCCCTCCTTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
** * * * ** * * **** *
46512155 -AAAGCTCCCTAGTTGCTTCCTTA-ACCTCT--CATCATTGTATTTCTCA-TCGTTTTCATTGT-
58 CATTG-T--TTACTT-CTT--TTAGA-CTCTAAAATGTTTGGAATAGAAACTC--TTGCATTGTC
** * * * * * *** * *** * * *
46512214 TTA-CTTATTTTTTAC-TC-TA-AAATGTTTAGAATAGAAAC-TCTTGCATGGTCAGCCCTTT-T
114 AGACCTT-TTTATAACAGCTTATACA-G--T-GATTCTCACCTTCTTGCACATTCTG--ATTTAG
* * * ** * * * ** * **** *
46512273 TA-AAACCACTTATACAGCGATTCTCTATTGTCTCGCACATTCTGCT-TTA-GGAGAAAAGT-TG
172 GAGAAA--AGTTGTTTA--AAGTCTTTA-TGAGT--C-CA---TGGTATTATGG-TCCTATTATG
** * ** ** * * *
46512334 TT---TA-AAGTCTTTATGAGTTCATGGTATTATGGTCCTATTATATTCCTTG-TAATGTTTACA
225 TTCCCTATTTGGCAGT-TGA-TTC-TCCTCTT-TGGT--TATT-TGTTCCCTGCTAATGTTTACA
** * * *
46512394 CGTTTTTGGGGAAATATAATATTACAGCAAAGACAAGTACGTCTCAAATTCATTACGTCTCAAAT
283 CGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAAT
* * * * *
46512459 TGGTCATAA-ATACATGCAATACCAGCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAAT
348 TGATCACAATA-ACCTGCAATGCCACCTCCAACAAAGTCTCTTATCG-AAAAATTGAATCCAAAT
*
46512523 ACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTC
411 ACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTA
* ** *
46512588 AATATAAAAAATGGATATATTGTCATTTTAGTCCCACTAATATAATTTTT-TATTTTTAGTTAAA
476 AATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATATAATTTTTCT-TTTTTATTTAAA
* *
46512652 ATAAGACAAAATCATAAGAATTTGAAAATTACACCTATGAAAATTACATAAAAATCACAAGACTG
540 ATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGACTG
46512717 CCTTTAG
605 CCTTTAG
* * * *
46512724 CCTTCAAGTTCCCTCCTTTCTTCTTTCATC-CTTCAT-ACTCCCTCATTTCTGCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTCT-CATC-CTT--TT
* * * * * ** *
46512786 CAAGCTCCCTGCTTTAC-TCCTTCA-ACTCTCATCATCAA-ATTT---CT-CATCCT-TTTCATT
58 C-A--T---TG-TTTACTTCTTTTAGACTCT-A--A--AATGTTTGGAATAGAAACTCTTGCATT
** ** * * * * *
46512843 GT-TTA-CTTATTT-T-GGA-CTCTATA-ATGTTTGGAATATAAACTCTTGCATGGTCAGCCCTT
111 GTCAGACCTT-TTTATAACAGCT-TATACA-G--T-GATTCT-CAC-CTT-C-T--T--GCACAT
* * * ** * * *** *
46512902 TCT-ATAACCGCTTA-TATAACAATTTTGTACCTTTCCGTACATTCTACTTTAGGGGAAAAGTTG
162 TCTGAT------TTAGGAGAA-AA-GTTG-----TT---TA-A-AGT-CTTTATGAGTCCA-TGG
** * * * * *
46512965 T-TTAAAGT-CT-TTATGAGTCCATGGTATTATGATCCTA-TT-ATGTTTCCTATTTGGCAATTG
207 TATTATGGTCCTATTATG-TTCC---CTATT-TG--GC-AGTTGAT-TCTCCTCTTTGG---TT-
* ***
46513025 ATTCTCCTCTCTTGTTATTTATTCCCTGCTAATGTTTACAAGTTTTTGAAAAAATATGGTATTAT
259 A--------T-TTG-------TTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTAT
* **
46513090 AGTAAAGACA--T--G------------TACGTCTCAAATTGATCACAATAACTTATAATGCCAC
308 AGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCAC
* * * * *
46513139 CTCAAAAAAAGTCTCTTATTGAAAAAATTGGATCCAAATACTATAATAAT---ATCAAATATGGT
373 CTCCAACAAAGTCTCTTATCG-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGT
* *
46513201 GATTAGTAATATAAAACCATAACAACAGTTAGCATTTTCAATATAAAAAATGGTTATATTGTTGT
437 GATTAGTAATATAAAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGT
* ** *
46513266 TTTAGTCCCGCTAATATAATTTTTAATTTTTATTTTAAATAAGACAAAATCATAAGAATCTGAAA
502 TTTAGTCCCACTAATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAA
* * *
46513331 ATTACACCTATGAAAATTACACAAAAATCACAAGATTGCCTATAA
567 ATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCTTTAG
** * * *
46513376 CCTTCAAGCTCTATCCTTTTTTCCCTCAACTCTCATCATCATATTGCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* ** * * * * * * *
46513441 ACTTTTTTTTTACTTTAAAATGTTTGAAATAGAAACTTTTGCATGGTCAGCCCTTTTTATACCCG
66 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACAG
* * *
46513506 CTTATACAGTGATTCTCTAGCTTCTTGCACATTCTAATTTAGGAGAAAA-TCTTTTTAAAGTC--
131 CTTATACAGTGATTCTC-ACCTTCTTGCACATTCTGATTTAGGAGAAAAGT-TGTTTAAAGTCTT
* * * * *
46513568 -ATGAGGCCATGTTTTTATGGTCCTATTATGTTCCCTATTTGGAAGTTGATTCTTCTCTTTGGTT
194 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* * * * *
46513632 ATTTGTTCCCTGTTAATATTTACACGTTTTGGGGGGAAATATGGTATTATAATAAAGACAAGTAC
259 ATTTGTTCCCTGCTAATGTTTACACGTTTT-TGGGGAAATATGGTATTATAGTAAAGACATGTAC
* * ** **
46513697 GTCTCAAATTTATTACGTCTCGAATTGATCACAATAACCCACAATGCCACCTCCAACAATTTCTC
323 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
* * * *
46513762 TTATCGAAAAAGTTGAATCCAAATACTATAATAATAGGAGCAAATATGATAATTAGTACTATAAA
388 TTATCGAAAAA-TTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
* * *
46513827 ACCATAACAAGAGTTAGAATTTTTAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
452 ACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * * * * *
46513892 ATGA---TT-TTTTTT-GTT-GAATAAGACAAAATCATAAAAATCTAAAAATTACACCTACGAAA
517 ATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAA
*
46513951 ATTACACAAAAACCACAAGACTGCCTTTAG
582 ATTACACAAAAATCACAAGACTGCCTTTAG
* * * *
46513981 TCTTTATGCTCCCTTCTTTCTTC
1 CCTTCAAGCTCCCTCCTTTCTTC
46514004 TTTTAGCCTT
Statistics
Matches: 10714, Mismatches: 2104, Indels: 2033
0.72 0.14 0.14
Matches are distributed among these distances:
591 22 0.00
592 24 0.00
594 3 0.00
595 187 0.02
596 75 0.01
597 641 0.06
598 210 0.02
599 17 0.00
600 92 0.01
601 106 0.01
602 24 0.00
603 16 0.00
604 10 0.00
605 89 0.01
606 12 0.00
607 23 0.00
608 286 0.03
609 112 0.01
610 82 0.01
611 808 0.08
612 1435 0.13
613 1290 0.12
614 77 0.01
615 51 0.00
616 53 0.00
617 46 0.00
618 47 0.00
619 42 0.00
620 44 0.00
621 60 0.01
622 27 0.00
623 53 0.00
624 213 0.02
625 78 0.01
626 24 0.00
627 28 0.00
628 26 0.00
629 35 0.00
630 33 0.00
631 201 0.02
632 275 0.03
633 60 0.01
634 42 0.00
635 37 0.00
636 57 0.01
637 44 0.00
638 50 0.00
639 63 0.01
640 62 0.01
641 127 0.01
642 238 0.02
643 68 0.01
644 43 0.00
645 42 0.00
646 59 0.01
647 51 0.00
648 25 0.00
649 60 0.01
650 44 0.00
651 35 0.00
652 228 0.02
653 32 0.00
654 63 0.01
655 216 0.02
656 71 0.01
657 22 0.00
658 78 0.01
659 28 0.00
660 255 0.02
661 32 0.00
662 6 0.00
663 96 0.01
664 27 0.00
665 61 0.01
666 85 0.01
667 78 0.01
668 121 0.01
669 448 0.04
670 215 0.02
671 279 0.03
672 88 0.01
673 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (611 bp):
CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAACTCTTGCATTGTCAGACCTTTTTATAACAG
CTTATACAGTGATTCTCACCTTCTTGCACATTCTGATTTAGGAGAAAAGTTGTTTAAAGTCTTTA
TGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTTAT
TTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTC
TCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCTTA
TCGAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCA
TAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATATAA
TTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTA
CACAAAAATCACAAGACTGCCTTTAG
Found at i:46504559 original size:29 final size:29
Alignment explanation
Indices: 46504490--46504560 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
46504480 CTGCCTTTAG
* **
46504490 CCTTCAAGCTCCCTCCTTTCTTCTTTCAT
1 CCTTCAAGCTCCCTCATTTCTTCACTCAT
* *
46504519 CCTT-AATACTCCCTCATTTCTTCACTCTT
1 CCTTCAA-GCTCCCTCATTTCTTCACTCAT
46504548 CCTTCAAGCTCCC
1 CCTTCAAGCTCCC
46504561 AACTTTATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 2 0.06
29 30 0.88
30 2 0.06
ACGTcount: A:0.14, C:0.42, G:0.03, T:0.41
Consensus pattern (29 bp):
CCTTCAAGCTCCCTCATTTCTTCACTCAT
Found at i:46507094 original size:29 final size:29
Alignment explanation
Indices: 46507025--46507095 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
46507015 CTGCCTTTAG
* ***
46507025 CCTTCAAGCTCCCTCCTTTCTTTTTTCAT
1 CCTTCAAGCTCCCTCATTTCTTCACTCAT
* *
46507054 GCTTCATA-CTCCCTCATTTCTTCACTCTT
1 CCTTCA-AGCTCCCTCATTTCTTCACTCAT
46507083 CCTTCAAGCTCCC
1 CCTTCAAGCTCCC
46507096 AACTTTATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
28 1 0.03
29 31 0.94
30 1 0.03
ACGTcount: A:0.13, C:0.41, G:0.04, T:0.42
Consensus pattern (29 bp):
CCTTCAAGCTCCCTCATTTCTTCACTCAT
Found at i:46510871 original size:29 final size:29
Alignment explanation
Indices: 46510819--46510888 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
46510809 GTCTTCATGT
**
46510819 TCCCTCCTTTCTTCTTTCAACCTTCAA-A
1 TCCCTCCTTTCTTCACTCAACCTTCAAGA
**
46510847 CTCCCTCCTTTCTTCACTCCTCCTTCAAGA
1 -TCCCTCCTTTCTTCACTCAACCTTCAAGA
*
46510877 TCCCTACTTTCT
1 TCCCTCCTTTCT
46510889 CCCTTAACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 34 0.97
30 1 0.03
ACGTcount: A:0.14, C:0.43, G:0.01, T:0.41
Consensus pattern (29 bp):
TCCCTCCTTTCTTCACTCAACCTTCAAGA
Found at i:46512962 original size:631 final size:634
Alignment explanation
Indices: 46511751--46513386 Score: 1922
Period size: 631 Copynumber: 2.6 Consensus size: 634
46511741 TGTTCCCTGC
* *** * * * * * *
46511751 TAATGTTTACACGGTTTTGGGGAAATATGGGATTATAGTAAAGAGATGTACGTCTCAAATTTAGT
1 TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAAGAAAAGTACGTCTCAAATTCATT
* * * * * *
46511816 ACATCTAAAATTGAT-AACAATAACCTATAATGCCATCTCCAACAAAGTCTCTTATTAAAAAAAA
66 ACGTCTCAAATTGATCAA-AATAACATATAATGCCACCTCCAACAAAGTCTCTTATTGAAAAAAT
*** *
46511880 TGAAGATAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAA
130 TGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAG
* * * * *
46511945 TTAACATTTTCAATATAAAAAATGGTTAGATTGTGGTTTTACTCTCGCTAATATAATTTTTCT-T
195 TTAGCATTTTCAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCGCTAATATAATTTTT-TAT
* * *
46512009 TTTTTTTTAAAAATAAGACAAAAT-AGCAATAATCTGAAAATTACACCTATGAAAATTACACAAA
259 TTTTATTT-AAAATAAGACAAAATCA-TAAGAATCTGAAAATTACACCTATGAAAATTACACAAA
* *
46512073 AATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCATTTCTTCTTTCAACCTTCAAATTCCCTCC
322 AATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCATTTCTTCTTTCAACCTTCAAACTCCCTCA
* * ***
46512138 TTTCTTCACTCTTCCTTAAAGCTCCCTAGTTGCTTCCTTAACCTCTCATCATTGTATTTCTCATC
387 TTTCTGCACTCTTCCTTAAAGCTCCCTAGTTACTTCCTTAACCTCTCATCATCAAATTTCTCATC
* **
46512203 GTTTTCATTGTTTACTTATTTTTTACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCC
452 CTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCC
* * * *
46512268 CTTTTTAAAACCACTTATACAGCGATTCTCTATTGTCTCGCACATTCTGCTTTAGGAGAAAAGTT
517 CTTTCTAAAACCACTTATACAACAATTCTCTATTGTCTCGCACATTCTACTTTAGGAGAAAAGTT
* *
46512333 GTTTAAAGTCTTTATGAGTTCATGGTATTATGGTCCTATTAT-ATTCC-TT-G
582 GTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATTATGATTCCTTTGG
*
46512383 TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAAGACAAGTACGTCTCAAATTCATT
1 TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAAGAAAAGTACGTCTCAAATTCATT
* ** * * *
46512448 ACGTCTCAAATTGGTCATAAAT-ACATGCAATACCAGCTCCAACAAAGTCTCTTATCGAAAAAAT
66 ACGTCTCAAATTGATCA-AAATAACATATAATGCCACCTCCAACAAAGTCTCTTATTGAAAAAAT
46512512 TGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAG
130 TGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAG
* * *
46512577 TTAGCATTTTCAATATAAAAAATGGATATATTGTCATTTTAGTCCCACTAATATAATTTTTTATT
195 TTAGCATTTTCAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCGCTAATATAATTTTTTATT
* * *
46512642 TTTAGTTAAAATAAGACAAAATCATAAGAATTTGAAAATTACACCTATGAAAATTACATAAAAAT
260 TTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAAT
* * * *
46512707 CACAAGACTGCCTTTAGCCTTCAAGTTCCCTCCTTTCTTCTTTCATCCTTCATACTCCCTCATTT
325 CACAAGACTGCCTTTAGCCTTCAAGCTCCCTCATTTCTTCTTTCAACCTTCAAACTCCCTCATTT
*
46512772 CTGCACTCTTCCTTCAAGCTCCCT-GCTTTAC-TCCTTCAA-CTCTCATCATCAAATTTCTCATC
390 CTGCACTCTTCCTTAAAGCTCCCTAG--TTACTTCCTT-AACCTCTCATCATCAAATTTCTCATC
* * *
46512834 CTTTTCATTGTTTACTTATTTTGGACTCTATAATGTTTGGAATATAAACTCTTGCATGGTCAGCC
452 CTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCC
* * * * * * *
46512899 CTTTCTATAACCGCTTATATAACAATTTTGTACCTT-TC-CGTACATTCTACTTTAGGGGAAAAG
517 CTTTCTAAAACCACTTATACAACAATTCTCTA--TTGTCTCGCACATTCTACTTTAGGAGAAAAG
*
46512962 TTGTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATTATGTTTCCTATTTGG
580 TTGTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATTATGATTCC--TTTGG
* * * ****** * * *
46513019 CAATTGATTCTCCTCTCTTGTTATTT-ATTCCCTGCTAATGTTTACAAGTTTTTGAAA-AAATAT
1 TAA-TG-TT-T--ACAC--GTT-TTTGGGGAAAT-ATAAT-ATTAC-AG-----CAAAGAAA-A-
* * * ** * * * *
46513082 GGTA-TTATAGTAAAGACATGTACGTCTCAAATTGATCACAATAACTTATAATGCCACCTCAAAA
48 -GTACGTCT--CAAATTCAT-TACGTCTCAAATTGATCAAAATAACATATAATGCCACCTCCAAC
* *
46513146 AAAGTCTCTTATTGAAAAAATTGGATCCAAATACTATAATAAT---ATCAAATATGGTGATTAGT
109 AAAGTCTCTTATTGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGT
*
46513208 AATATAAAACCATAACAACAGTTAGCATTTTCAATATAAAAAATGGTTATATTGTTGTTTTAGTC
174 AATATAAAACCATAACAACAGTTAGCATTTTCAATATAAAAAATGGTTATATTGTCGTTTTAGTC
* *
46513273 CCGCTAATATAATTTTTAATTTTTATTTTAAATAAGACAAAATCATAAGAATCTGAAAATTACAC
239 CCGCTAATATAATTTTTTATTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACAC
* * *
46513338 CTATGAAAATTACACAAAAATCACAAGATTGCCTATAACCTTCAAGCTC
304 CTATGAAAATTACACAAAAATCACAAGACTGCCTTTAGCCTTCAAGCTC
46513387 TATCCTTTTT
Statistics
Matches: 853, Mismatches: 114, Indels: 54
0.84 0.11 0.05
Matches are distributed among these distances:
630 1 0.00
631 306 0.36
632 234 0.27
633 6 0.01
634 1 0.00
635 2 0.00
636 3 0.00
637 2 0.00
638 2 0.00
639 1 0.00
641 2 0.00
643 4 0.00
644 7 0.01
645 4 0.00
646 2 0.00
650 2 0.00
651 4 0.00
652 186 0.22
653 3 0.00
654 9 0.01
655 72 0.08
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (634 bp):
TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAAGAAAAGTACGTCTCAAATTCATT
ACGTCTCAAATTGATCAAAATAACATATAATGCCACCTCCAACAAAGTCTCTTATTGAAAAAATT
GAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGT
TAGCATTTTCAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCGCTAATATAATTTTTTATTT
TTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTACACAAAAATC
ACAAGACTGCCTTTAGCCTTCAAGCTCCCTCATTTCTTCTTTCAACCTTCAAACTCCCTCATTTC
TGCACTCTTCCTTAAAGCTCCCTAGTTACTTCCTTAACCTCTCATCATCAAATTTCTCATCCTTT
TCATTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTT
CTAAAACCACTTATACAACAATTCTCTATTGTCTCGCACATTCTACTTTAGGAGAAAAGTTGTTT
AAAGTCTTTATGAGTCCATGGTATTATGATCCTATTATGATTCCTTTGG
Found at i:46514354 original size:81 final size:81
Alignment explanation
Indices: 46514246--46514403 Score: 289
Period size: 81 Copynumber: 2.0 Consensus size: 81
46514236 ATGACCATGG
* *
46514246 TATTATGGTCCTATTTTGTTCCCTATTTGGCTGTTGATTCTCCACTTTGGTTATTTGTTCCCTTG
1 TATTATGGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTTG
46514311 TAATGTTTACACGGGA
66 TAATGTTTACACGGGA
*
46514327 TATTCTGGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTTG
1 TATTATGGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTTG
46514392 TAATGTTTACAC
66 TAATGTTTACAC
46514404 AGTTTTGGGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (81 bp):
TATTATGGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTTG
TAATGTTTACACGGGA
Found at i:46517229 original size:13 final size:13
Alignment explanation
Indices: 46517211--46517236 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46517201 ATATGTGATT
46517211 ATTCATCTACAAA
1 ATTCATCTACAAA
46517224 ATTCATCTACAAA
1 ATTCATCTACAAA
46517237 TTGTTATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ATTCATCTACAAA
Found at i:46518221 original size:43 final size:43
Alignment explanation
Indices: 46518158--46518248 Score: 173
Period size: 43 Copynumber: 2.1 Consensus size: 43
46518148 AATCCAATCG
*
46518158 TTACAATTACAACTATTTTTCAAATCCAAACTAGTTAGATTTC
1 TTACAATTACAACTAATTTTCAAATCCAAACTAGTTAGATTTC
46518201 TTACAATTACAACTAATTTTCAAATCCAAACTAGTTAGATTTC
1 TTACAATTACAACTAATTTTCAAATCCAAACTAGTTAGATTTC
46518244 TTACA
1 TTACA
46518249 CCGGTTTGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.38
Consensus pattern (43 bp):
TTACAATTACAACTAATTTTCAAATCCAAACTAGTTAGATTTC
Found at i:46519356 original size:21 final size:21
Alignment explanation
Indices: 46519332--46519398 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
46519322 AATCCTCACA
46519332 AACAACTTCTAAACCATCTCC
1 AACAACTTCTAAACCATCTCC
* * * * *
46519353 AACACCCTATAAACCTTCACC
1 AACAACTTCTAAACCATCTCC
** * *
46519374 AGTAGCTTCTAAACCATCTCT
1 AACAACTTCTAAACCATCTCC
46519395 AACA
1 AACA
46519399 CCCCATAAAC
Statistics
Matches: 31, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.37, C:0.36, G:0.03, T:0.24
Consensus pattern (21 bp):
AACAACTTCTAAACCATCTCC
Found at i:46519435 original size:42 final size:42
Alignment explanation
Indices: 46519318--46519437 Score: 136
Period size: 42 Copynumber: 2.9 Consensus size: 42
46519308 TGTGGTGTTA
* *
46519318 CATAAATCC-TCACAAACAACTTCTAAACCATCTCCAACACCC
1 CATAAA-CCTTCACCAACAACTTCTAAACCATCTCTAACACCC
* ** *
46519360 TATAAACCTTCACCAGTAGCTTCTAAACCATCTCTAACACCC
1 CATAAACCTTCACCAACAACTTCTAAACCATCTCTAACACCC
* *
46519402 CATAAACCTTCATCAACAACTT-TTAACCTATCTCTA
1 CATAAACCTTCACCAACAACTTCTAAACC-ATCTCTA
46519438 TAACACCCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 7 0.11
42 57 0.89
ACGTcount: A:0.37, C:0.36, G:0.02, T:0.26
Consensus pattern (42 bp):
CATAAACCTTCACCAACAACTTCTAAACCATCTCTAACACCC
Found at i:46524890 original size:25 final size:25
Alignment explanation
Indices: 46524862--46524956 Score: 120
Period size: 25 Copynumber: 3.8 Consensus size: 25
46524852 CTGTACATGT
* *
46524862 ATGCTCACACGAGCTGTGAATCAAA
1 ATGCTCACACGAGCTGTGAATTAGA
46524887 ATGCTCACACGAGCAT-TGAATTAGA
1 ATGCTCACACGAGC-TGTGAATTAGA
* *
46524912 ATTCTCACACGAGTTGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATTAGA
* *
46524937 ATGCTCATACAAGCTGTGAA
1 ATGCTCACACGAGCTGTGAA
46524957 AATGGGCCTG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 1 0.02
25 58 0.97
26 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATTAGA
Found at i:46534284 original size:26 final size:26
Alignment explanation
Indices: 46534255--46534304 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
46534245 TCATTATGTG
*
46534255 ATTTTATTTTA-TATTTTTTTTGTTAA
1 ATTTTATTTTACT-TCTTTTTTGTTAA
*
46534281 ATTTTGTTTTACTTCTTTTTTGTT
1 ATTTTATTTTACTTCTTTTTTGTT
46534305 TGGCAGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (26 bp):
ATTTTATTTTACTTCTTTTTTGTTAA
Found at i:46542277 original size:23 final size:23
Alignment explanation
Indices: 46542247--46542291 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
46542237 ATCCTCGACT
46542247 TTTAGATGATCCTTCCCAAAACA
1 TTTAGATGATCCTTCCCAAAACA
46542270 TTTAGATGATCCTTCCCAAAAC
1 TTTAGATGATCCTTCCCAAAAC
46542292 GAATAAGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (23 bp):
TTTAGATGATCCTTCCCAAAACA
Found at i:46543893 original size:9 final size:10
Alignment explanation
Indices: 46543879--46543921 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
46543869 ATTAATATCC
46543879 AAAT-AAGTA
1 AAATAAAGTA
*
46543888 AAATAAAATA
1 AAATAAAGTA
46543898 AAATAAAGTAA
1 AAATAAAGT-A
46543909 TAAATAAAGTA
1 -AAATAAAGTA
46543920 AA
1 AA
46543922 GAAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 14 0.48
11 2 0.07
12 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAAGTA
Found at i:46543910 original size:27 final size:25
Alignment explanation
Indices: 46543879--46543950 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 25
46543869 ATTAATATCC
*
46543879 AAATAAGTAAAATAAAATAAAATAAA
1 AAATAA-TAAAATAAAAAAAAATAAA
* *
46543905 GTAATAAATAAAGTAAAGAAAAAATAAA
1 -AAAT-AATAAAATAAA-AAAAAATAAA
46543933 AAATAATAAAAATAAAAA
1 AAATAAT-AAAATAAAAA
46543951 TTAGGTTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 5 0.14
27 21 0.57
28 11 0.30
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (25 bp):
AAATAATAAAATAAAAAAAAATAAA
Found at i:46543915 original size:17 final size:16
Alignment explanation
Indices: 46543892--46543933 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
46543882 TAAGTAAAAT
46543892 AAAATAAAATAAAGTAA
1 AAAATAAAATAAAG-AA
* *
46543909 TAAATAAAGTAAAGAA
1 AAAATAAAATAAAGAA
46543925 AAAATAAAA
1 AAAATAAAA
46543934 AATAATAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (16 bp):
AAAATAAAATAAAGAA
Found at i:46558962 original size:28 final size:28
Alignment explanation
Indices: 46558931--46559159 Score: 160
Period size: 28 Copynumber: 8.2 Consensus size: 28
46558921 AAAAAATGCT
* *
46558931 TTTGTGGTGAACCTATGAAGGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * * **
46558959 TTTGTGGCGAACCTCTAAAAGGATAGAT
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* ** * * * *
46558987 TTTATGGCAAACCTTTGAAAGAAAATCT
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
46559015 TTTGTGGTGAA-CTCCT-AGAAGG-AAGCC
1 TTTGTGGTGAACCT-CTGA-AAGGAAAGCC
* *
46559042 TTTGTGGCGAACCTCTAAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* ** * *
46559070 TTTGTAGAAAACTTCTAAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * *
46559098 TTTGTGGTGAAACTTTGAAAGGAAAGAC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * *
46559126 TTTATGGTAAACCTCTTAAAGG-AAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
*
46559153 CTTGTGG
1 TTTGTGG
46559160 CAATCTTAAT
Statistics
Matches: 153, Mismatches: 43, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
27 31 0.20
28 122 0.80
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (28 bp):
TTTGTGGTGAACCTCTGAAAGGAAAGCC
Found at i:46559102 original size:83 final size:84
Alignment explanation
Indices: 46558931--46559149 Score: 221
Period size: 83 Copynumber: 2.6 Consensus size: 84
46558921 AAAAAATGCT
* * *
46558931 TTTGTGGTGAACCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGATAGATTTTATGGCA
1 TTTGTGGTGAACCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTATAGCA
* * * *
46558996 AACCTTTGAAAGAAAATCT
66 AAACTTTAAAAGAAAAGCC
* *
46559015 TTTGTGGTGAACTCCTA-GAA-GG-AAGCCTTTGTGGCGAACCTCTAAAAGGAAAGCCTTTGTAG
1 TTTGTGGTGAA--CCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTATAG
*
46559077 -AAAACTTCTAAAAGGAAAGCC
64 CAAAACTT-TAAAAGAAAAGCC
* * * * * ** *
46559098 TTTGTGGTGAAACTTTGAAAGGAAAGACTTTATGGTAAACCTCTTAAAGGAA
1 TTTGTGGTGAACCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAA
46559150 GCCCTTGTGG
Statistics
Matches: 112, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
81 2 0.02
82 9 0.08
83 57 0.51
84 37 0.33
85 3 0.03
86 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (84 bp):
TTTGTGGTGAACCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTATAGCA
AAACTTTAAAAGAAAAGCC
Found at i:46559119 original size:56 final size:55
Alignment explanation
Indices: 46558931--46559159 Score: 183
Period size: 56 Copynumber: 4.1 Consensus size: 55
46558921 AAAAAATGCT
* * * ** **
46558931 TTTGTGGTGAACCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGATAGAT
1 TTTGTGGTGAAACTTTGAAAGGAAAGCCTTTGTGGTAAACCTCTAAAAGGA-AGCC
* * * * * * *
46558987 TTTATGG-CAAACCTTTGAAAGAAAATCTTTTGTGGTGAA-CTCCTAGAAGGAAGCC
1 TTTGTGGTGAAA-CTTTGAAAGGAAAGCCTTTGTGGTAAACCT-CTAAAAGGAAGCC
* * * * * * *
46559042 TTTGTGGCGAACCTCTAAAAGGAAAGCCTTTGTAGAAAACTTCTAAAAGGAAAGCC
1 TTTGTGGTGAAACTTTGAAAGGAAAGCCTTTGTGGTAAACCTCTAAAAGG-AAGCC
* * *
46559098 TTTGTGGTGAAACTTTGAAAGGAAAGACTTTATGGTAAACCTCTTAAAGGAAGCC
1 TTTGTGGTGAAACTTTGAAAGGAAAGCCTTTGTGGTAAACCTCTAAAAGGAAGCC
*
46559153 CTTGTGG
1 TTTGTGG
46559160 CAATCTTAAT
Statistics
Matches: 132, Mismatches: 36, Indels: 11
0.74 0.20 0.06
Matches are distributed among these distances:
55 49 0.37
56 83 0.63
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (55 bp):
TTTGTGGTGAAACTTTGAAAGGAAAGCCTTTGTGGTAAACCTCTAAAAGGAAGCC
Found at i:46559205 original size:27 final size:27
Alignment explanation
Indices: 46559142--46559205 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
46559132 GTAAACCTCT
46559142 TAAAGGAAGCCCTTGTGGCAATCTTAA
1 TAAAGGAAGCCCTTGTGGCAATCTTAA
**
46559169 TAAATAAAGCCCTTGTGGCAAT-TTGAA
1 TAAAGGAAGCCCTTGTGGCAATCTT-AA
46559196 TAAAGGAAGC
1 TAAAGGAAGC
46559206 TTTGTGGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (27 bp):
TAAAGGAAGCCCTTGTGGCAATCTTAA
Found at i:46559252 original size:26 final size:24
Alignment explanation
Indices: 46559195--46559253 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 24
46559185 GGCAATTTGA
46559195 ATAAAGGAAGCTTTGTGGTGAAAG
1 ATAAAGGAAGCTTTGTGGTGAAAG
* *
46559219 ATGGAAGGAATGCTTTTGTGGTGAAAT
1 AT-AAAGGAA-GC-TTTGTGGTGAAAG
*
46559246 CTAAAGGA
1 ATAAAGGA
46559254 TGGCACTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 7 0.25
27 13 0.46
ACGTcount: A:0.36, C:0.05, G:0.32, T:0.27
Consensus pattern (24 bp):
ATAAAGGAAGCTTTGTGGTGAAAG
Found at i:46570989 original size:28 final size:28
Alignment explanation
Indices: 46570953--46571042 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
46570943 CTAGGAAAAT
* * * *
46570953 AAAGTCTTTATGGTAAACCTCTAAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGAAAGG
*
46570981 AAAGCCTTTGTGGCGAAATC-CTGAAAGG
1 AAAGCCTTTGTGGC-AAACCTCTGAAAGG
* *
46571009 AAA-CCTTTGTGGCGAACCTTTGAAAGG
1 AAAGCCTTTGTGGCAAACCTCTGAAAGG
46571036 AAAGCCT
1 AAAGCCT
46571043 CTACGACAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
26 3 0.06
27 20 0.39
28 24 0.47
29 4 0.08
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (28 bp):
AAAGCCTTTGTGGCAAACCTCTGAAAGG
Found at i:46571032 original size:27 final size:28
Alignment explanation
Indices: 46570976--46571042 Score: 95
Period size: 27 Copynumber: 2.4 Consensus size: 28
46570966 TAAACCTCTA
46570976 AAAGGAAAGCCTTTGTGGCGAAATCCTG
1 AAAGGAAAGCCTTTGTGGCGAAATCCTG
46571004 AAAGGAAA-CCTTTGTGGCG-AA-CCTTTG
1 AAAGGAAAGCCTTTGTGGCGAAATCC--TG
46571031 AAAGGAAAGCCT
1 AAAGGAAAGCCT
46571043 CTACGACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.06
26 2 0.06
27 21 0.58
28 11 0.31
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (28 bp):
AAAGGAAAGCCTTTGTGGCGAAATCCTG
Found at i:46571086 original size:28 final size:28
Alignment explanation
Indices: 46570976--46571100 Score: 105
Period size: 28 Copynumber: 4.5 Consensus size: 28
46570966 TAAACCTCTA
* * *
46570976 AAAGGAAAGCCTTTGTGGCGAA-ATCCTG
1 AAAGGAAAGCCTCTGTAGCGAACAT-TTG
* * *
46571004 AAAGGAAA-CCTTTGTGGCGAACCTTTG
1 AAAGGAAAGCCTCTGTAGCGAACATTTG
* *
46571031 AAAGGAAAGCCTC--TACGACAAACTTTTG
1 AAAGGAAAGCCTCTGTA-G-CGAACATTTG
*
46571059 AAAGGAATGCCTCTGTAGCGAACATTTG
1 AAAGGAAAGCCTCTGTAGCGAACATTTG
*
46571087 AATGGAAAGCCTCT
1 AAAGGAAAGCCTCT
46571101 TTTCATAGTG
Statistics
Matches: 80, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
26 1 0.01
27 24 0.30
28 52 0.65
29 1 0.01
30 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (28 bp):
AAAGGAAAGCCTCTGTAGCGAACATTTG
Found at i:46587511 original size:10 final size:10
Alignment explanation
Indices: 46587496--46587521 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
46587486 TTATAATTTT
46587496 TATATACATA
1 TATATACATA
46587506 TATATACATA
1 TATATACATA
46587516 TATATA
1 TATATA
46587522 TTTATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATACATA
Found at i:46590313 original size:24 final size:22
Alignment explanation
Indices: 46590262--46590303 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
46590252 AAATCTTATA
*
46590262 TATATTACTAAAATATTTATTT
1 TATATTACTAAAATATTAATTT
46590284 TATATTA-TAAAATATTAATT
1 TATATTACTAAAATATTAATT
46590304 ATTGAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTACTAAAATATTAATTT
Found at i:46591243 original size:19 final size:19
Alignment explanation
Indices: 46591219--46591259 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
46591209 CGTATACTTG
*
46591219 AATAAACAATATGGAATAC
1 AATAAACAAGATGGAATAC
* *
46591238 AATAAAGAAGGTGGAATAC
1 AATAAACAAGATGGAATAC
46591257 AAT
1 AAT
46591260 TCATATTGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.17, T:0.20
Consensus pattern (19 bp):
AATAAACAAGATGGAATAC
Found at i:46593832 original size:5 final size:5
Alignment explanation
Indices: 46593811--46593847 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
46593801 TTTCGCAAAG
46593811 TTTT- TTTTA TTTT- TTTTA TTTTA TTTTGA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTT
46593848 CCTTAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
4 8 0.27
5 17 0.57
6 5 0.17
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.84
Consensus pattern (5 bp):
TTTTA
Found at i:46594532 original size:3 final size:3
Alignment explanation
Indices: 46594524--46594551 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
46594514 CAATTTTATG
46594524 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
46594552 ATATCTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:46595825 original size:27 final size:27
Alignment explanation
Indices: 46595786--46595847 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
46595776 CACAACCTCT
* *
46595786 ATTTTTTAAATCGCCACTAAGGCTTCC
1 ATTTCTTAAATCGCCACAAAGGCTTCC
*
46595813 ATTTCTTATATCGCCACAAAGGCTTCC
1 ATTTCTTAAATCGCCACAAAGGCTTCC
46595840 ATTTCTTA
1 ATTTCTTA
46595848 GATCACCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.39
Consensus pattern (27 bp):
ATTTCTTAAATCGCCACAAAGGCTTCC
Found at i:46595869 original size:27 final size:27
Alignment explanation
Indices: 46595799--46595872 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
46595789 TTTTAAATCG
* * * *
46595799 CCACTAAGGCTTCCATTTCTTATATCG
1 CCACAAAGGATTCCATTTCTTAGATCA
*
46595826 CCACAAAGGCTTCCATTTCTTAGATCA
1 CCACAAAGGATTCCATTTCTTAGATCA
* * *
46595853 CCATAGAGGATTTCATTTCT
1 CCACAAAGGATTCCATTTCT
46595873 CTGACGTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (27 bp):
CCACAAAGGATTCCATTTCTTAGATCA
Found at i:46605471 original size:17 final size:17
Alignment explanation
Indices: 46605449--46605482 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46605439 GGTACTAATA
46605449 TGTATTTTTAAAATATT
1 TGTATTTTTAAAATATT
*
46605466 TGTATTTTTATAATATT
1 TGTATTTTTAAAATATT
46605483 CAAAGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TGTATTTTTAAAATATT
Found at i:46605503 original size:13 final size:13
Alignment explanation
Indices: 46605485--46605509 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46605475 ATAATATTCA
46605485 AAGAAAAAAATAG
1 AAGAAAAAAATAG
46605498 AAGAAAAAAATA
1 AAGAAAAAAATA
46605510 TTTTTTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAGAAAAAAATAG
Found at i:46610851 original size:20 final size:19
Alignment explanation
Indices: 46610811--46610855 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
46610801 CAAGAATATC
* *
46610811 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
46610831 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
46610850 AAATAA
1 AAATAA
46610856 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:46611229 original size:12 final size:12
Alignment explanation
Indices: 46611196--46611229 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
46611186 GTATATGGAA
46611196 ATAAATATATAT
1 ATAAATATATAT
* *
46611208 ATACACATATAT
1 ATAAATATATAT
46611220 ATAAATATAT
1 ATAAATATAT
46611230 GAAAATAATA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (12 bp):
ATAAATATATAT
Found at i:46612838 original size:44 final size:40
Alignment explanation
Indices: 46612782--46612891 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 40
46612772 TTCAGTCTAC
* * *
46612782 CTCACTGGAACTTCAGGAGGATAAGACTTGCTTGCTGAGTCTG
1 CTCACTGCAACTTCAGGAGGATAAGACTAG-ATGC-GA-TCTG
46612825 CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATCTG
1 CT-CACTGCAACTTCAGGAG-GATAAGACTAGATGCGATCTG
* * *
46612866 CTCTCTGCAACTTCAGAAAGATAAGA
1 CTCACTGCAACTTCAGGAGGATAAGA
46612892 TCCAAGGTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
40 20 0.34
41 6 0.10
42 2 0.03
43 6 0.10
44 24 0.41
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTG
Found at i:46612950 original size:34 final size:34
Alignment explanation
Indices: 46612907--46612971 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
46612897 GGTTTTAATC
46612907 TGCTCCACTACAACTTCAAGGAGATAAGATTATT
1 TGCTCCACTACAACTTCAAGGAGATAAGATTATT
*
46612941 TGCTCCACTACAACTTCAGGGAGATAAGATT
1 TGCTCCACTACAACTTCAAGGAGATAAGATT
46612972 TGCCATCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (34 bp):
TGCTCCACTACAACTTCAAGGAGATAAGATTATT
Found at i:46613122 original size:132 final size:132
Alignment explanation
Indices: 46612941--46613408 Score: 709
Period size: 132 Copynumber: 3.6 Consensus size: 132
46612931 TAAGATTATT
** * * *
46612941 TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 TGCTCCACTACTGCTT-AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
* * *
46613006 AGATAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTG
65 AGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTG
46613071 ATC
130 ATC
* *
46613074 TGCTCCACTACTGCTTTGGGAGATAAGATCTACAATCTTCAACCTACT-C-C-ACTG--C---GA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA
*
46613131 GACAAGGCTTTGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
66 GACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
46613196 TC
131 TC
* *
46613198 TGCTCCTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA
*
46613263 GACAAGGCTTTGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
66 GACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
46613328 TC
131 TC
* * *
46613330 TGCTCCTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGGGA
1 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA
*
46613395 GATAAGGCTTGGTG
66 GACAAGGCTTGGTG
46613409 TTTCACCGGT
Statistics
Matches: 309, Mismatches: 18, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
124 110 0.36
125 1 0.00
126 1 0.00
127 4 0.01
129 4 0.01
130 1 0.00
131 1 0.00
132 173 0.56
133 14 0.05
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (132 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGA
GACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGA
TC
Found at i:46619413 original size:482 final size:483
Alignment explanation
Indices: 46618507--46619474 Score: 1857
Period size: 482 Copynumber: 2.0 Consensus size: 483
46618497 AAACCCATTT
46618507 CTGTAGTTTTGGATAATTTTGGCACCAAAATTTTGCTCCCTTCAAGAACAAATGCCTCATTTACA
1 CTGTAGTTTTGGATAATTTTGGCACCAAAATTTTGCTCCCTTCAAGAACAAATGCCTCATTTACA
46618572 AACTCCAAAGATCGAAATGAGCATTCTACTGACTCATCATTGGTCTCCACGTATGGCGTCTCATT
66 AACTCCAAAGATCGAAATGAGCATTCTACTGACTCATCATTGGTCTCCACGTATGGCGTCTCATT
*
46618637 GGATACAGCTGCTATTATATCCTCTTCGGCAATTATTGTCACTAGCCGACCATCTGACACTAACT
131 GGATACAGCTGCTATTATATCCTCTTCAGCAATTATTGTCACTAGCCGACCATCTGACACTAACT
*
46618702 TTAACATCTGATATAATGATGACGGTACTGCCCCCGCCGAATGTATCCATGGTCTTCCTAATAAA
196 TCAACATCTGATATAATGATGACGGTACTGCCCCCGCCGAATGTATCCATGGTCTTCCTAATAAA
46618767 CAATTATAGGAAGATTTGATGTCCATCATAATAAAATCTATCTCATTAACTGTTGGGCCATTCAG
261 CAATTATAGGAAGATTTGATGTCCATCATAATAAAATCTATCTCATTAACTGTTGGGCCATTCAG
46618832 TAGGGGTATCTCAATTCTTCCCATGACCTTTCTTTCTGTACCGTCAAATGCCCTCACTACATTTT
326 TAGGGGTATCTCAATTCTTCCCATGACCTTTCTTTCTGTACCGTCAAATGCCCTCACTACATTTT
46618897 GACATGTTTTCATGTGTGAACTGTCTATGGGTAGCCTGTTGAGTGTGAATAATGGCAATACGTTC
391 GACATGTTTTCATGTGTGAACTGTCTATGGGTAGCCTGTTGAGTGTGAATAATGGCAATACGTTC
46618962 AAAGCCGATCCATTGTCAGTCAATACTC
456 AAAGCCGATCCATTGTCAGTCAATACTC
46618990 CTGTAGTTTTGGATAATTTTGGCACCAAAATTTTGCTCCCTTCAAGAACAAATGCCTCATTTACA
1 CTGTAGTTTTGGATAATTTTGGCACCAAAATTTTGCTCCCTTCAAGAACAAATGCCTCATTTACA
*
46619055 AACTCCAAAGATCGAAATGAGCATTCTACTGACTCGTCATTGGTCTCCACGTATGGCGTCTCATT
66 AACTCCAAAGATCGAAATGAGCATTCTACTGACTCATCATTGGTCTCCACGTATGGCGTCTCATT
*
46619120 GGATACAGCTGCTATTATATCCTCTTCAGCATTTATTGTCACTAGCCGACCATCTGACACTAACT
131 GGATACAGCTGCTATTATATCCTCTTCAGCAATTATTGTCACTAGCCGACCATCTGACACTAACT
* ***
46619185 TCAACATCTGATGTAAT-ATGGTTGTACTGCCCCCGCCGAATGTATCCATGGTCTTCCTAATAAA
196 TCAACATCTGATATAATGATGACGGTACTGCCCCCGCCGAATGTATCCATGGTCTTCCTAATAAA
46619249 CAATTATAGGAAGATTTGATGTCCATCATAATAAAATCTATCTCATTAACTGTTGGGCCATTCAG
261 CAATTATAGGAAGATTTGATGTCCATCATAATAAAATCTATCTCATTAACTGTTGGGCCATTCAG
46619314 TAGGGGTATCTCAATTCTTCCCATGACCTTTCTTTCTGTACCGTCAAATGCCCTCACTACATTTT
326 TAGGGGTATCTCAATTCTTCCCATGACCTTTCTTTCTGTACCGTCAAATGCCCTCACTACATTTT
46619379 GACATGTTTTCATGTGTGAACTGTCTATGGGTAGCCTGTTGAGTGTGAATAATGGCAATACGTTC
391 GACATGTTTTCATGTGTGAACTGTCTATGGGTAGCCTGTTGAGTGTGAATAATGGCAATACGTTC
46619444 AAAGCCGATCCATTGTCAGTCAATACTC
456 AAAGCCGATCCATTGTCAGTCAATACTC
46619472 CTG
1 CTG
46619475 GCAAAATATG
Statistics
Matches: 477, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
482 270 0.57
483 207 0.43
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (483 bp):
CTGTAGTTTTGGATAATTTTGGCACCAAAATTTTGCTCCCTTCAAGAACAAATGCCTCATTTACA
AACTCCAAAGATCGAAATGAGCATTCTACTGACTCATCATTGGTCTCCACGTATGGCGTCTCATT
GGATACAGCTGCTATTATATCCTCTTCAGCAATTATTGTCACTAGCCGACCATCTGACACTAACT
TCAACATCTGATATAATGATGACGGTACTGCCCCCGCCGAATGTATCCATGGTCTTCCTAATAAA
CAATTATAGGAAGATTTGATGTCCATCATAATAAAATCTATCTCATTAACTGTTGGGCCATTCAG
TAGGGGTATCTCAATTCTTCCCATGACCTTTCTTTCTGTACCGTCAAATGCCCTCACTACATTTT
GACATGTTTTCATGTGTGAACTGTCTATGGGTAGCCTGTTGAGTGTGAATAATGGCAATACGTTC
AAAGCCGATCCATTGTCAGTCAATACTC
Found at i:46621742 original size:24 final size:24
Alignment explanation
Indices: 46621714--46621759 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
46621704 ATCATTTTTT
*
46621714 GCTGCTCATT-CATTTGCTTTTGAA
1 GCTGCTC-TTGCATTTCCTTTTGAA
46621738 GCTGCTCTTGCATTTCCTTTTG
1 GCTGCTCTTGCATTTCCTTTTG
46621760 GGACTGTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (24 bp):
GCTGCTCTTGCATTTCCTTTTGAA
Found at i:46625422 original size:20 final size:19
Alignment explanation
Indices: 46625382--46625426 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
46625372 CAAGAATATC
* *
46625382 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
46625402 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
46625421 AAATAA
1 AAATAA
46625427 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:46626076 original size:20 final size:19
Alignment explanation
Indices: 46626036--46626080 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
46626026 CAAGAATATC
* *
46626036 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
46626056 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
46626075 AAATAA
1 AAATAA
46626081 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:46630944 original size:45 final size:45
Alignment explanation
Indices: 46630849--46630937 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
46630839 AAAATGGTAG
*
46630849 AGAAAGCTAACCTTTTCTAATGATGTTTCTATGATCGAAAAAACA
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
*
46630894 AGAAAGCTAACTTTTTCTAATGACGTTTCTATGATCGAAAAAAC
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAAC
46630938 TTGAAAGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (45 bp):
AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
Found at i:46631029 original size:16 final size:16
Alignment explanation
Indices: 46631008--46631043 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
46630998 TTTGGTTCGC
46631008 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
46631024 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
46631040 TGTA
1 TGTA
46631044 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:46631108 original size:44 final size:45
Alignment explanation
Indices: 46631024--46631114 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
46631014 GGATTAGAGG
* * *
46631024 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
46631069 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
46631113 TG
1 TG
46631115 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:46631300 original size:18 final size:17
Alignment explanation
Indices: 46631279--46631313 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46631269 TTATTATTAA
*
46631279 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
46631297 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
46631314 TCTTANNNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:46646081 original size:11 final size:11
Alignment explanation
Indices: 46646043--46646085 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
46646033 CAAAAAAATA
46646043 TGTTATTTT-T
1 TGTTATTTTCT
**
46646053 TGTTATTTTAA
1 TGTTATTTTCT
*
46646064 TGATATTTTCT
1 TGTTATTTTCT
46646075 TGTTATTTTCT
1 TGTTATTTTCT
46646086 CCCTATTTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.16, C:0.05, G:0.09, T:0.70
Consensus pattern (11 bp):
TGTTATTTTCT
Found at i:46651316 original size:28 final size:28
Alignment explanation
Indices: 46651241--46651305 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 28
46651231 AAATATGTAC
*
46651241 ATAAGAAAACAATAAATATACATATATATAA
1 ATAATAAAA-AAT-AAT-TACATATATATAA
**
46651272 ATTTTAAAAAATAATTACATATATA-AA
1 ATAATAAAAAATAATTACATATATATAA
46651299 ATAATAA
1 ATAATAA
46651306 TAATTACATT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 7 0.24
28 10 0.34
29 3 0.10
30 3 0.10
31 6 0.21
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (28 bp):
ATAATAAAAAATAATTACATATATATAA
Found at i:46652880 original size:44 final size:44
Alignment explanation
Indices: 46652825--46652950 Score: 141
Period size: 44 Copynumber: 2.8 Consensus size: 44
46652815 GGGGGATAAG
** *
46652825 ACTTGAGTCTGCTCTGCTGTAACTTCAGGGAGATAAGATGTTT-TT
1 ACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TTTCTT
* *
46652870 A-TTCAGTCTGCCCCACTGCAATTTCAGGG-GAATAAGATTTTCTT
1 ACTT-AGTCTGCTCCACTGCAACTTCAGGGAG-ATAAGATTTTCTT
*
46652914 ACTTAGTCTGCTCCACTGCCACTTCAGGGAGATAAGA
1 ACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
46652951 CTAGATGTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.06
44 60 0.88
45 4 0.06
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (44 bp):
ACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTT
Found at i:46653285 original size:99 final size:100
Alignment explanation
Indices: 46653105--46653288 Score: 246
Period size: 99 Copynumber: 1.9 Consensus size: 100
46653095 TGTTTAACTG
* * **
46653105 CAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTGATCCATTGCACTTCCAGGGAAGT
1 CAATGTCGGGAAAACAAGATTCACCGTCGTAGCTTCAATCTGATCCATTACACCGCCAGGGAAGT
46653170 AAGATTCGCCGCTGCGGCTTCAATATTTTAAATTA
66 AAGATTCGCCGCTGCGGCTTCAATATTTTAAATTA
* * * * *
46653205 CAATGTTGGGAAAACACGATTCGCCGTCGTAGCTTC-ATCT-ATTCCATTACACCGCCAGGGGAT
1 CAATGTCGGGAAAACAAGATTCACCGTCGTAGCTTCAATCTGA-TCCATTACACCGCCAGGGAAG
**
46653268 TAAGATTCGCCTTTGCGGCTT
65 TAAGATTCGCCGCTGCGGCTT
46653289 TAATCTGCTC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
98 1 0.01
99 39 0.54
100 32 0.44
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (100 bp):
CAATGTCGGGAAAACAAGATTCACCGTCGTAGCTTCAATCTGATCCATTACACCGCCAGGGAAGT
AAGATTCGCCGCTGCGGCTTCAATATTTTAAATTA
Found at i:46656413 original size:394 final size:394
Alignment explanation
Indices: 46655684--46656475 Score: 1226
Period size: 394 Copynumber: 2.0 Consensus size: 394
46655674 TCTACCCACT
* * *
46655684 TAGTGAAGTAGTCAATAACTACAAAAATGAAACGATGTCCATTAGAAACCTTTGGCGATATTGGC
1 TAGTGAAGTAGTCAATAACCACAAAAATGAAACGATATCCATTAGAAACCTTCGGCGATATTGGC
* * * * *
46655749 CCAATGACATCCATTCCCCACAGGGAGAAAGGCCATGGAGAAGTCATAACATGAAGAGGTGAAGG
66 CCAATGACATCCATACCCCACAGGGAGAAAGGCCACGGAAAAGTCAAAACATGAAGAGGAGAAGG
*
46655814 AGGCGCGTGCATTTTATCCACATAAATTTGGCATTTATGGCACTTCTTGGCATAATTGATGCAAT
131 AGGCGCGTGCATTTTATCCACATAAATTTGGCATTTATGACACTTCTTGGCATAATTGATGCAAT
* * * * * *
46655879 CTCCTTCCATGGTGGACCAGTAATATCTGAATCTCATGATCTGTTTAGACATGGTGAATCCATTG
196 CTCCTTCCATAGTGGACCAGTAATATCCGAATCTCATAATCTGTCTAGACATGGTAAATCCATTA
* * * *
46655944 GCGTGTGTTCCACAAATACCCTCATGGACTTCTTCTAAAATTTCCTTAGCCTCTACAGTATCCAC
261 GCGTGCGTTCCACAAACACCCTCATGGACTTCTTCTAAAATTTCCCTAGCCTCTACAGCATCCAC
* * *
46656009 GCATCTCAACAGTACTCGATCATTTCCCCTTTTGTATAGAATATCTCCATCTAAGACATAGTCGA
326 GCACCTCAACAATACTCGATCATTTCCCCTTTTGTATAGAATATCTCCATCTAAGACATAGTCAA
46656074 TAGC
391 TAGC
*
46656078 TAGTGAAGTAGTCAATAACCACAAAAATGAAACGATATCCATTA-AAAGCCTTCGGTGATATTGG
1 TAGTGAAGTAGTCAATAACCACAAAAATGAAACGATATCCATTAGAAA-CCTTCGGCGATATTGG
* * * *
46656142 TCCAATGACGTCCATACCTCACATGGAGAAAGGCCACGGAAAAGTCAAAACATGAAGAGGAGAAG
65 CCCAATGACATCCATACCCCACAGGGAGAAAGGCCACGGAAAAGTCAAAACATGAAGAGGAGAAG
* * *
46656207 GAGGCGCGTGCATTTTATCCCCATAAATTTGGCATTTATGACATTTCTTGGCATGATTGATGCAA
130 GAGGCGCGTGCATTTTATCCACATAAATTTGGCATTTATGACACTTCTTGGCATAATTGATGCAA
* * *
46656272 TCTCTTTCTATAGTGGACCAGTAATATCCGAATCTCATAATCTGTCTAGCCATGGTAAATCCATT
195 TCTCCTTCCATAGTGGACCAGTAATATCCGAATCTCATAATCTGTCTAGACATGGTAAATCCATT
* *
46656337 AGCGTGCGTTCCACAAACACCCTTATGGACTTCTTCTAAAATTTCCCTAGCCTCTACAGCGTCCA
260 AGCGTGCGTTCCACAAACACCCTCATGGACTTCTTCTAAAATTTCCCTAGCCTCTACAGCATCCA
* * *
46656402 CGCACCTCAACAATACTCGATCCTTTCCCCTTTTGTATAGGATCTCTCCATCTAAGACATAGTCA
325 CGCACCTCAACAATACTCGATCATTTCCCCTTTTGTATAGAATATCTCCATCTAAGACATAGTCA
46656467 ATAGC
390 ATAGC
46656472 TAGT
1 TAGT
46656476 CTCCTCAATG
Statistics
Matches: 359, Mismatches: 38, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
393 3 0.01
394 356 0.99
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (394 bp):
TAGTGAAGTAGTCAATAACCACAAAAATGAAACGATATCCATTAGAAACCTTCGGCGATATTGGC
CCAATGACATCCATACCCCACAGGGAGAAAGGCCACGGAAAAGTCAAAACATGAAGAGGAGAAGG
AGGCGCGTGCATTTTATCCACATAAATTTGGCATTTATGACACTTCTTGGCATAATTGATGCAAT
CTCCTTCCATAGTGGACCAGTAATATCCGAATCTCATAATCTGTCTAGACATGGTAAATCCATTA
GCGTGCGTTCCACAAACACCCTCATGGACTTCTTCTAAAATTTCCCTAGCCTCTACAGCATCCAC
GCACCTCAACAATACTCGATCATTTCCCCTTTTGTATAGAATATCTCCATCTAAGACATAGTCAA
TAGC
Found at i:46682255 original size:11 final size:11
Alignment explanation
Indices: 46682239--46682264 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
46682229 ACTTGAACGG
46682239 AAATAAAAATA
1 AAATAAAAATA
46682250 AAATAAAAATA
1 AAATAAAAATA
46682261 AAAT
1 AAAT
46682265 TACATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:46687394 original size:14 final size:13
Alignment explanation
Indices: 46687371--46687404 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
46687361 ACCTCCTTGG
46687371 ATTAAATTATTAA
1 ATTAAATTATTAA
46687384 ATTAGAATTATTAA
1 ATTA-AATTATTAA
46687398 A-TAAATT
1 ATTAAATT
46687405 GAAAATCGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 6 0.30
14 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:46687467 original size:23 final size:23
Alignment explanation
Indices: 46687436--46687488 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
46687426 TAAAGGGGTC
46687436 AATCAAAAAAAGGTAAGTTAATT
1 AATCAAAAAAAGGTAAGTTAATT
* *
46687459 AATCCAAAAAAGGTATGTTAATT
1 AATCAAAAAAAGGTAAGTTAATT
46687482 AATCAAA
1 AATCAAA
46687489 GGTCCAACTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (23 bp):
AATCAAAAAAAGGTAAGTTAATT
Found at i:46697576 original size:43 final size:43
Alignment explanation
Indices: 46697478--46697607 Score: 108
Period size: 43 Copynumber: 3.0 Consensus size: 43
46697468 AACTCGTACA
* ** *
46697478 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAACGTCCCAGAAGTGGTCTTACACACAAACACATATCG
* *
46697521 ATGCC-TCTGTCCCAGATAG-GGTCTTACACATAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGA-AGTGGTCTTACACACAAACACATA-TCG
* *
46697564 ATGCCAACGTCCCCA-ACGTGGTCTTACACGA-TAACACATATCG
1 ATGCCAACGT-CCCAGAAGTGGTCTTACAC-ACAAACACATATCG
46697607 A
1 A
46697608 AAATCCTATG
Statistics
Matches: 70, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
42 3 0.04
43 59 0.84
44 8 0.11
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGAAGTGGTCTTACACACAAACACATATCG
Found at i:46699660 original size:42 final size:42
Alignment explanation
Indices: 46699599--46699729 Score: 145
Period size: 43 Copynumber: 3.1 Consensus size: 42
46699589 TTGCGGCGTT
* * *
46699599 TTTTACAATAAACGTCGCTAAAGGACATGACTTTTAGTGGCGC
1 TTTTACAA-AAACGCCGCTAAAGGTCATGACCTTTAGTGGCGC
* * *
46699642 TTTTACAAAAACGCCGCTAAAGGTTATAACCTTTAGTCGCGC
1 TTTTACAAAAACGCCGCTAAAGGTCATGACCTTTAGTGGCGC
* * * * *
46699684 TTTTCCCACAAACACCGCCAAAGGTCATGACCTTTAGCGGCGC
1 TTTT-ACAAAAACGCCGCTAAAGGTCATGACCTTTAGTGGCGC
46699727 TTT
1 TTT
46699730 CCCCACAAAC
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 32 0.44
43 41 0.56
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
TTTTACAAAAACGCCGCTAAAGGTCATGACCTTTAGTGGCGC
Found at i:46699756 original size:43 final size:44
Alignment explanation
Indices: 46699670--46699837 Score: 173
Period size: 43 Copynumber: 3.9 Consensus size: 44
46699660 AAAGGTTATA
* * * **
46699670 ACCTTTAGTC-GCGCTTTTCCCACAAACACCGCCA-AAGGTCATG
1 ACCTTTAG-CGGCGCTTTCCCCACAAACGCCGCTATAAGACCATG
*
46699713 ACCTTTAGCGGCGCTTTCCCCACAAACGCCACTATAA-ACCATG
1 ACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTATAAGACCATG
* ** *
46699756 ACCTTTAGCGGTGCTTTCCCCACAAACGTTGCTA-AAGATCATG
1 ACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTATAAGACCATG
** * *
46699799 ACCTTTAGCAACGTTTTTCCCACAAACGCCGCTATAAGA
1 ACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTATAAGA
46699838 TTGACTTTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
42 3 0.03
43 94 0.91
44 6 0.06
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (44 bp):
ACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTATAAGACCATG
Found at i:46699859 original size:43 final size:43
Alignment explanation
Indices: 46699684--46699860 Score: 123
Period size: 43 Copynumber: 4.1 Consensus size: 43
46699674 TTAGTCGCGC
* * * **
46699684 TTTTCCCACAAACACCGCCA-AAGGTCATGACCTTTAGCGGCGC-
1 TTTTCCCACAAACGCCGCTATAAGAT--TGACCTTTAGCGATGCT
* * * *
46699727 TTTCCCCACAAACGCCACTATAA-ACCATGACCTTTAGCGGTGC-
1 TTTTCCCACAAACGCCGCTATAAGA--TTGACCTTTAGCGATGCT
* ** * *
46699770 TTTCCCCACAAACGTTGCTA-AAGATCATGACCTTTAGCAACG-T
1 TTTTCCCACAAACGCCGCTATAAGAT--TGACCTTTAGCGATGCT
*
46699813 TTTTCCCACAAACGCCGCTATAAGATTGACTTTTAGCGATGCT
1 TTTTCCCACAAACGCCGCTATAAGATTGACCTTTAGCGATGCT
46699856 TTTTC
1 TTTTC
46699861 ACGAACGTCG
Statistics
Matches: 105, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 14 0.13
43 84 0.80
44 7 0.07
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.28
Consensus pattern (43 bp):
TTTTCCCACAAACGCCGCTATAAGATTGACCTTTAGCGATGCT
Found at i:46703528 original size:35 final size:35
Alignment explanation
Indices: 46703456--46703528 Score: 80
Period size: 35 Copynumber: 2.1 Consensus size: 35
46703446 TTTTTAATAT
*
46703456 TTAATTATTGTATCTTTCATATAAATTTTAAATAA
1 TTAATTATTGTATCTTTCATATAAATTTTAAAGAA
*
46703491 TTAATTATTAGTAT-TTT-ATGT-AATGTTTAAAAGAA
1 TTAATTATT-GTATCTTTCATATAAAT-TTT-AAAGAA
46703526 TTA
1 TTA
46703529 GATAAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
33 3 0.09
34 6 0.18
35 20 0.61
36 4 0.12
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.51
Consensus pattern (35 bp):
TTAATTATTGTATCTTTCATATAAATTTTAAAGAA
Found at i:46703565 original size:19 final size:19
Alignment explanation
Indices: 46703543--46703584 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
46703533 AAATTATAAA
46703543 TTTTAGTTTTTTATTTCAT
1 TTTTAGTTTTTTATTTCAT
* *
46703562 TTTTATTTTTTTATTTTAT
1 TTTTAGTTTTTTATTTCAT
46703581 TTTT
1 TTTT
46703585 TTCTTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTAGTTTTTTATTTCAT
Found at i:46703578 original size:13 final size:13
Alignment explanation
Indices: 46703562--46703586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46703552 TTTATTTCAT
46703562 TTTTATTTTTTTA
1 TTTTATTTTTTTA
46703575 TTTTATTTTTTT
1 TTTTATTTTTTT
46703587 CTTATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:46704383 original size:41 final size:40
Alignment explanation
Indices: 46704322--46704504 Score: 260
Period size: 41 Copynumber: 4.5 Consensus size: 40
46704312 NNNNNNNNNN
46704322 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTCC
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTT-C
* * *
46704363 AAAAACGTCGCTAAATCCCCGAGCATTAGCTGTGC-CTTTTT
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGC-G-GCGCTTTTC
*
46704404 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCACCTTTTC
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGC-GCTTTTC
*
46704445 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCCTTCTC
1 AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCG-CTTTTC
*
46704486 AAAAACGCCACTAAAGCCC
1 AAAAACGCCGCTAAAGCCC
46704505 TGAAAGGTCA
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.02
40 1 0.01
41 117 0.91
42 6 0.05
43 2 0.02
ACGTcount: A:0.30, C:0.33, G:0.19, T:0.18
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTC
Found at i:46705201 original size:43 final size:43
Alignment explanation
Indices: 46705114--46705237 Score: 114
Period size: 43 Copynumber: 2.9 Consensus size: 43
46705104 AGCTCATACA
* * * * *
46705114 ATGCAAACGTCCCAAACGTGGTCTTATATG-TAATTACATA-TCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACA-AGTCG
46705157 ATGCC-ACTGTCCCAGACAG-GGTCTTACACG-TAAACACAAGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAT-AACACAAGTCG
*
46705200 ATGCCAACGTCCCCGACGTGGTCTTACACGATAACACA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGATAACACA
46705238 TATCGGAAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.06
43 58 0.85
44 6 0.09
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGATAACACAAGTCG
Found at i:46706127 original size:14 final size:14
Alignment explanation
Indices: 46706108--46706136 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46706098 ATAGCTTTGT
46706108 TTATTTTACTATTA
1 TTATTTTACTATTA
46706122 TTATTTTACTATTA
1 TTATTTTACTATTA
46706136 T
1 T
46706137 AATTAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTTTACTATTA
Found at i:46718884 original size:33 final size:33
Alignment explanation
Indices: 46718847--46718962 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 33
46718837 AAATTTTATT
* *
46718847 ATTAAAAACTATTAGATATATATTATTTTTAAA
1 ATTAAAAACTATTAAATATATATTATTTCTAAA
* ** * * *
46718880 ATTAAAAAATTAAAAAAATTAAAAATTTATTTCTAAT
1 ATT-AAAAACT-ATTAAA-TATATA-TTATTTCTAAA
* *
46718917 ATTTAAAAGTATTAAATATATATTATTTCTAAA
1 ATTAAAAACTATTAAATATATATTATTTCTAAA
46718950 ATTAAAAACTATT
1 ATTAAAAACTATT
46718963 TAAAACTCTA
Statistics
Matches: 62, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
33 24 0.39
34 10 0.16
35 7 0.11
36 9 0.15
37 12 0.19
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (33 bp):
ATTAAAAACTATTAAATATATATTATTTCTAAA
Found at i:46718923 original size:30 final size:32
Alignment explanation
Indices: 46718885--46718957 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 32
46718875 TTAAAATTAA
46718885 AAAATTAAAAAAATTAAA-A-AT-TTATTTCT
1 AAAATTAAAAAAATTAAATATATATTATTTCT
* **
46718914 AATATTTAAAAGTATTAAATATATATTATTTCT
1 AA-AATTAAAAAAATTAAATATATATTATTTCT
46718947 AAAATTAAAAA
1 AAAATTAAAAA
46718958 CTATTTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 2 0.06
30 13 0.37
31 1 0.03
32 9 0.26
33 10 0.29
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (32 bp):
AAAATTAAAAAAATTAAATATATATTATTTCT
Found at i:46719014 original size:34 final size:31
Alignment explanation
Indices: 46718939--46719014 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 31
46718929 TAAATATATA
* *
46718939 TTATTTCTAAAATTAAAAACTATTTAAAACT
1 TTATTTCTAAAATAAAAAAATATTTAAAACT
* * *
46718970 CTATTCCTAAAATAAAAAAATAATTTTTTAAACT
1 TTATTTCTAAAATAAAAAAAT-A--TTTAAAACT
46719004 TTATTTCTAAA
1 TTATTTCTAAA
46719015 CTTGCCTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
31 17 0.49
32 1 0.03
34 17 0.49
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (31 bp):
TTATTTCTAAAATAAAAAAATATTTAAAACT
Found at i:46719705 original size:39 final size:43
Alignment explanation
Indices: 46719601--46719707 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 43
46719591 AAATAGAGGC
46719601 GTAATGGAATAGAGGTGTAATAGTAAATCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGTGTAATAGTAAATCAATTGTTTGGTT--AT
* * *
46719646 GTAATGGAATAGAGGCGTAATAGT-ATTC-TTGTGTTTGG-T-T
1 GTAATGGAATAGAGGTGTAATAGTAAATCAAT-TGTTTGGTTAT
46719686 G-AATGGAATAGAGGTGTAATAG
1 GTAATGGAATAGAGGTGTAATAG
46719708 CATAATGGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 2 0.04
44 10 0.18
45 23 0.40
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.35
Consensus pattern (43 bp):
GTAATGGAATAGAGGTGTAATAGTAAATCAATTGTTTGGTTAT
Found at i:46725323 original size:2 final size:2
Alignment explanation
Indices: 46725316--46725348 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
46725306 CTACTTAGAT
46725316 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
46725349 ATGGTAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46733020 original size:73 final size:73
Alignment explanation
Indices: 46732933--46733079 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
46732923 TGACAACATT
46732933 AATAATGAGAATGACCTAATTCTAACCATCAAGCTCAACTCAGCATGGTTTATTTAAGCTAGATC
1 AATAATGAGAATGACCTAATTCTAACCATCAAGCTCAACTCAGCATGGTTTATTTAAGCTAGATC
46732998 ACACATCC
66 ACACATCC
46733006 AATAATGAGAATGACCTAATTCTAACCATCAAGCTCAACTCAGCATGGTTTATTTAAGCTAGATC
1 AATAATGAGAATGACCTAATTCTAACCATCAAGCTCAACTCAGCATGGTTTATTTAAGCTAGATC
46733071 ACACATCC
66 ACACATCC
46733079 A
1 A
46733080 CACCACATAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.27
Consensus pattern (73 bp):
AATAATGAGAATGACCTAATTCTAACCATCAAGCTCAACTCAGCATGGTTTATTTAAGCTAGATC
ACACATCC
Found at i:46748184 original size:5 final size:5
Alignment explanation
Indices: 46748174--46748204 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
46748164 TTAGCGCTCA
46748174 CTGAC CTGAC CTGAC CTGAC CTGAC CTGAC C
1 CTGAC CTGAC CTGAC CTGAC CTGAC CTGAC C
46748205 AATCCCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (5 bp):
CTGAC
Found at i:46748272 original size:5 final size:5
Alignment explanation
Indices: 46748262--46748294 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
46748252 CCCTCCTTTT
46748262 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCT
1 CCTTC CCTTC CCTTC CCTTC CCTTC CCTTC CCT
46748295 CGCTCGCTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (5 bp):
CCTTC
Found at i:46749349 original size:16 final size:16
Alignment explanation
Indices: 46749328--46749367 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
46749318 AAAAACTTGT
46749328 TTGTTATAGCAAAAT-A
1 TTGTTATAGC-AAATGA
*
46749344 TTGTTATAGCATATGA
1 TTGTTATAGCAAATGA
46749360 TTGTTATA
1 TTGTTATA
46749368 AAGAGGGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 3 0.14
16 19 0.86
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (16 bp):
TTGTTATAGCAAATGA
Found at i:46763013 original size:2 final size:2
Alignment explanation
Indices: 46763006--46763030 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46762996 TAAGTGATAC
46763006 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
46763031 AGTTTAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46763899 original size:157 final size:158
Alignment explanation
Indices: 46763613--46763928 Score: 625
Period size: 157 Copynumber: 2.0 Consensus size: 158
46763603 TATTTTAGCA
46763613 TTCTTCATGTTTTAAAATATTTTTCACATATATATAGTTTTTTTTAGTTTTTTTTGATAAATTAT
1 TTCTTCATGTTTTAAAATATTTTTCACATATATATAGTTTTTTTTAGTTTTTTTTGATAAATTAT
46763678 AATACATTTTAATATTTTCATATATATAATTATAGTCTAACTTTTTAGTTTCTTACTAAATTATA
66 AATACATTTTAATATTTTCATATATATAATTATAGTCTAACTTTTTAGTTTCTTACTAAATTATA
46763743 TATTATATACATGTAAA-ATATCTTAAT
131 TATTATATACATGTAAATATATCTTAAT
46763770 TTCTTCATGTTTTAAAATATTTTTCACATATATATAGTTTTTTTTAGTTTTTTTTGATAAATTAT
1 TTCTTCATGTTTTAAAATATTTTTCACATATATATAGTTTTTTTTAGTTTTTTTTGATAAATTAT
46763835 AATACATTTTAATATTTTCATATATATAATTATAGTCTAACTTTTTAGTTTCTTACTAAATTATA
66 AATACATTTTAATATTTTCATATATATAATTATAGTCTAACTTTTTAGTTTCTTACTAAATTATA
46763900 TATTATATACATGTAAATATATCTTAAT
131 TATTATATACATGTAAATATATCTTAAT
46763928 T
1 T
46763929 ATATACATAT
Statistics
Matches: 158, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
157 147 0.93
158 11 0.07
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (158 bp):
TTCTTCATGTTTTAAAATATTTTTCACATATATATAGTTTTTTTTAGTTTTTTTTGATAAATTAT
AATACATTTTAATATTTTCATATATATAATTATAGTCTAACTTTTTAGTTTCTTACTAAATTATA
TATTATATACATGTAAATATATCTTAAT
Found at i:46764045 original size:23 final size:22
Alignment explanation
Indices: 46763995--46764047 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
46763985 ACAACTTTTG
46763995 ATTTTAAATATGATTATAGAAAA
1 ATTTTAAA-ATGATTATAGAAAA
* *
46764018 A--TTAAAATGGTTAATATAAAA
1 ATTTTAAAATGATT-ATAGAAAA
46764039 ATTTTAAAA
1 ATTTTAAAA
46764048 ATTGATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.20
21 13 0.52
23 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.38
Consensus pattern (22 bp):
ATTTTAAAATGATTATAGAAAA
Found at i:46766102 original size:32 final size:32
Alignment explanation
Indices: 46766061--46766183 Score: 237
Period size: 32 Copynumber: 3.8 Consensus size: 32
46766051 AGATATTGAC
*
46766061 TATGTTTTAAGCTTGTTAGATATTGAATTTAT
1 TATGTTTTAAGCTTGTTGGATATTGAATTTAT
46766093 TATGTTTTAAGCTTGTTGGATATTGAATTTAT
1 TATGTTTTAAGCTTGTTGGATATTGAATTTAT
46766125 TATGTTTTAAGCTTGTTGGATATTGAATTTAT
1 TATGTTTTAAGCTTGTTGGATATTGAATTTAT
46766157 TATGTTTTAAGCTTGTTGGATATTGAA
1 TATGTTTTAAGCTTGTTGGATATTGAA
46766184 ATGATTGACA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 90 1.00
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (32 bp):
TATGTTTTAAGCTTGTTGGATATTGAATTTAT
Found at i:46767332 original size:20 final size:20
Alignment explanation
Indices: 46767307--46767344 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
46767297 ACAATTTAAA
46767307 ATATAAATTTATTAATATGT
1 ATATAAATTTATTAATATGT
46767327 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
46767345 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATGT
Found at i:46767456 original size:20 final size:19
Alignment explanation
Indices: 46767430--46767473 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
46767420 CCAAACACCA
*
46767430 AAAAAGTAAATTATTTTCC
1 AAAAAGTAAATCATTTTCC
46767449 AGAAAAGTAAATCATTTTCC
1 A-AAAAGTAAATCATTTTCC
46767469 AAAAA
1 AAAAA
46767474 TTATTTTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAAAGTAAATCATTTTCC
Found at i:46767651 original size:24 final size:24
Alignment explanation
Indices: 46767595--46767653 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
46767585 TCTCCTAAGG
46767595 TTAAGGTTTTTAATATTTTTAGGT
1 TTAAGGTTTTTAATATTTTTAGGT
*
46767619 TTAAAGTTTTTAATATTTTTAGGT
1 TTAAGGTTTTTAATATTTTTAGGT
*
46767643 TTAGGGTTTTT
1 TTAAGGTTTTT
46767654 GGGTTTAGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.24, C:0.00, G:0.17, T:0.59
Consensus pattern (24 bp):
TTAAGGTTTTTAATATTTTTAGGT
Found at i:46767669 original size:15 final size:15
Alignment explanation
Indices: 46767633--46767669 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
46767623 AGTTTTTAAT
*
46767633 ATTTTTAGGTTTAGG
1 ATTTTTGGGTTTAGG
*
46767648 GTTTTTGGGTTTAGG
1 ATTTTTGGGTTTAGG
46767663 ATTTTTG
1 ATTTTTG
46767670 ACAAAAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
ATTTTTGGGTTTAGG
Found at i:46769373 original size:19 final size:19
Alignment explanation
Indices: 46769351--46769391 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
46769341 ATTGCATTTC
46769351 ATTCA-TTGCATTTAGGTTA
1 ATTCATTTGCATTTA-GTTA
46769370 ATTCATTTGCATTTAGTTA
1 ATTCATTTGCATTTAGTTA
46769389 ATT
1 ATT
46769392 AAATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAGTTA
Found at i:46770369 original size:50 final size:50
Alignment explanation
Indices: 46770294--46770739 Score: 538
Period size: 50 Copynumber: 8.5 Consensus size: 50
46770284 NNNNNNNNNN
*
46770294 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
**
46770344 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGGGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
*
46770394 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GA-CATG
*
46770450 AGAGGTCTCC-TGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATA
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GA-CATG
*
46770506 AGAGGTCTCC-TGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATA
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GA-CATG
*
46770562 AGAGGTCTCC-TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
* *
46770612 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
* * * *
46770662 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
**
46770712 AGAACATCCCATGTAAGACCATGTCTGG
1 AG-AGGTCCCATGTAAGACCATGTCTGG
46770740 TGTAATCAAT
Statistics
Matches: 370, Mismatches: 17, Indels: 17
0.92 0.04 0.04
Matches are distributed among these distances:
49 2 0.01
50 185 0.50
51 25 0.07
55 3 0.01
56 153 0.41
57 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
Found at i:46773511 original size:18 final size:18
Alignment explanation
Indices: 46773488--46773523 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46773478 AATTTATTTA
46773488 TAAATAAATAAATCAAAT
1 TAAATAAATAAATCAAAT
* *
46773506 TAAATATATCAATCAAAT
1 TAAATAAATAAATCAAAT
46773524 GGTTTAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATAAATAAATCAAAT
Found at i:46785661 original size:18 final size:17
Alignment explanation
Indices: 46785638--46785673 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
46785628 CATGTTAGCA
*
46785638 TGCCACGTCAACATCATT
1 TGCCACATCAACAT-ATT
46785656 TGCCACATCAACATATT
1 TGCCACATCAACATATT
46785673 T
1 T
46785674 AACAGTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (17 bp):
TGCCACATCAACATATT
Found at i:46788419 original size:12 final size:12
Alignment explanation
Indices: 46788402--46788442 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
46788392 ACTTAATCAC
46788402 TTTAATATTAAA
1 TTTAATATTAAA
46788414 TTTAATATTAAA
1 TTTAATATTAAA
*
46788426 TCT--TATTAAA
1 TTTAATATTAAA
46788436 -TTAATAT
1 TTTAATAT
46788443 AATATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 1 0.04
10 7 0.28
11 3 0.12
12 14 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:46792578 original size:19 final size:19
Alignment explanation
Indices: 46792556--46792619 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
46792546 GCACAAAGCA
46792556 CATCCTAGCACACAAAGTG
1 CATCCTAGCACACAAAGTG
* * *
46792575 CATCTTAGCGCACCAAGTG
1 CATCCTAGCACACAAAGTG
* **
46792594 CATACCTGGCACATGAAGTG
1 CAT-CCTAGCACACAAAGTG
46792614 CATCCT
1 CATCCT
46792620 GGTGCAAGAG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 22 0.61
20 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (19 bp):
CATCCTAGCACACAAAGTG
Found at i:46794417 original size:2 final size:2
Alignment explanation
Indices: 46794410--46794434 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46794400 TATAATTGTG
46794410 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
46794435 AGATGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46795628 original size:23 final size:23
Alignment explanation
Indices: 46795612--46795685 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
46795602 AAAATGATAT
*
46795612 CAAAATAGCACAAAAAACAACAC
1 CAAAACAGCACAAAAAACAACAC
46795635 CAAAACAGCACAAAAAACAACAC
1 CAAAACAGCACAAAAAACAACAC
* * * *
46795658 CACTAGCAACAC-CAAAACAACAC
1 CA-AAACAGCACAAAAAACAACAC
46795681 CAAAA
1 CAAAA
46795686 ACCTGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.02
23 36 0.84
24 6 0.14
ACGTcount: A:0.62, C:0.31, G:0.04, T:0.03
Consensus pattern (23 bp):
CAAAACAGCACAAAAAACAACAC
Found at i:46795639 original size:12 final size:12
Alignment explanation
Indices: 46795624--46795687 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
46795614 AAATAGCACA
46795624 AAAAACAACACC
1 AAAAACAACACC
* *
46795636 -AAAACAGCACA
1 AAAAACAACACC
46795647 AAAAACAACACC
1 AAAAACAACACC
** *
46795659 ACTAGCAACACC
1 AAAAACAACACC
46795671 -AAAACAACACC
1 AAAAACAACACC
46795682 AAAAAC
1 AAAAAC
46795688 CTGCAAAATA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
11 17 0.43
12 23 0.57
ACGTcount: A:0.62, C:0.33, G:0.03, T:0.02
Consensus pattern (12 bp):
AAAAACAACACC
Found at i:46796327 original size:70 final size:70
Alignment explanation
Indices: 46796222--46796353 Score: 246
Period size: 70 Copynumber: 1.9 Consensus size: 70
46796212 GTCCAACTGT
* *
46796222 GACTTTTCACTCTTAGTGCTAGATTCATTTAAATACCATTTATAATCATCACTCTCATCAAACCA
1 GACTTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCATCAAACCA
46796287 ACTAC
66 ACTAC
46796292 GACTTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCATCAAA
1 GACTTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCATCAAA
46796354 ATCTCCCCCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.36
Consensus pattern (70 bp):
GACTTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCATCAAACCA
ACTAC
Found at i:46801429 original size:7 final size:7
Alignment explanation
Indices: 46801413--46801498 Score: 61
Period size: 7 Copynumber: 11.9 Consensus size: 7
46801403 TTAATATCCA
*
46801413 AATAAGT
1 AATAAAT
46801420 AATAAAT
1 AATAAAT
46801427 AATAAAAT
1 AAT-AAAT
46801435 AAAATAAAGT
1 --AATAAA-T
46801445 AATAAAT
1 AATAAAT
*
46801452 AAAGTAAAG
1 -AA-TAAAT
*
46801461 AA-AGA-
1 AATAAAT
*
46801466 AAGAAAT
1 AATAAAT
46801473 AATAAAT
1 AATAAAT
46801480 AATAAAT
1 AATAAAT
46801487 AAT-AAT
1 AATAAAT
46801493 AATAAA
1 AATAAA
46801499 AATTGGGTTG
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
5 2 0.03
6 10 0.15
7 28 0.43
8 14 0.22
9 7 0.11
10 4 0.06
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (7 bp):
AATAAAT
Found at i:46801442 original size:17 final size:17
Alignment explanation
Indices: 46801412--46801494 Score: 71
Period size: 17 Copynumber: 4.7 Consensus size: 17
46801402 ATTAATATCC
46801412 AAATAAGTAATAAATAAT
1 AAATAA-TAATAAATAAT
46801430 AAAATAA-AATAAAGTAAT
1 -AAATAATAATAAA-TAAT
* * *
46801448 AAATAA-AGTAAAGAAAG
1 AAATAATAATAAA-TAAT
*
46801465 AAAGAAATAATAAATAAT
1 AAA-TAATAATAAATAAT
46801483 AAATAATAATAA
1 AAATAATAATAA
46801495 TAAAAATTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
17 31 0.58
18 11 0.21
19 11 0.21
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (17 bp):
AAATAATAATAAATAAT
Found at i:46816624 original size:21 final size:21
Alignment explanation
Indices: 46816595--46816638 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
46816585 TGGGTGAATT
*
46816595 AGCTTTTACGAGCGTCTATTC
1 AGCTCTTACGAGCGTCTATTC
* *
46816616 AGCTCTTACGAGCTTCTGTTC
1 AGCTCTTACGAGCGTCTATTC
46816637 AG
1 AG
46816639 GTTTTGAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (21 bp):
AGCTCTTACGAGCGTCTATTC
Found at i:46817553 original size:44 final size:44
Alignment explanation
Indices: 46817490--46817664 Score: 350
Period size: 44 Copynumber: 4.0 Consensus size: 44
46817480 ATTGTGTAAG
46817490 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
1 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
46817534 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
1 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
46817578 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
1 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
46817622 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGC
1 TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGC
46817665 CGTTTGACCC
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 131 1.00
ACGTcount: A:0.16, C:0.23, G:0.32, T:0.29
Consensus pattern (44 bp):
TTAGTATGCTTACATGGCCTAGCACACGGGCGTGTGGCTTGGCT
Found at i:46821012 original size:26 final size:26
Alignment explanation
Indices: 46820983--46821033 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
46820973 GGAATGAGAC
46820983 GGTGTTATGTATAGGTGGATGGTTTT
1 GGTGTTATGTATAGGTGGATGGTTTT
46821009 GGTGTTATGTATAGGTGGATGGTTT
1 GGTGTTATGTATAGGTGGATGGTTT
46821034 AGTTAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (26 bp):
GGTGTTATGTATAGGTGGATGGTTTT
Found at i:46821935 original size:39 final size:39
Alignment explanation
Indices: 46821891--46822137 Score: 300
Period size: 39 Copynumber: 6.3 Consensus size: 39
46821881 TGGAATACCG
* *
46821891 AATATACTGAATTATTGCTCAATTGAGCAAGACTTACTA
1 AATATACTGAATTATTGCTCAATCGAGCAAAACTTACTA
* * * *
46821930 AATATATTGAATTATTGCTCAATCAAGCAAGACTTACTG
1 AATATACTGAATTATTGCTCAATCGAGCAAAACTTACTA
* * *
46821969 AATATACTGAATTGTTGCTCAATCGAGGAAAACTTACTG
1 AATATACTGAATTATTGCTCAATCGAGCAAAACTTACTA
* *
46822008 AATATACTGAATTGTTGCTCAATCGAGCAAAGCTTACTA
1 AATATACTGAATTATTGCTCAATCGAGCAAAACTTACTA
* * **
46822047 AATATACTGCAA-TGTTGCTCAATCAAGCAAAACTTACCG
1 AATATACTG-AATTATTGCTCAATCGAGCAAAACTTACTA
* *
46822086 AATATACTGAA-TACTGCTCAATCGAGCAAAACCTACTGAA
1 AATATACTGAATTATTGCTCAATCGAGCAAAACTTACT--A
46822126 AATATACTGAAT
1 AATATACTGAAT
46822138 ACTATTCCAG
Statistics
Matches: 182, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 23 0.13
39 146 0.80
40 13 0.07
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (39 bp):
AATATACTGAATTATTGCTCAATCGAGCAAAACTTACTA
Found at i:46822096 original size:117 final size:116
Alignment explanation
Indices: 46821890--46822137 Score: 347
Period size: 117 Copynumber: 2.1 Consensus size: 116
46821880 ATGGAATACC
* *
46821890 GAATATACTGAATTATTGCTCAATTGAGCAAGACTTACTAAATATATTGAATTATTGCTCAATCA
1 GAATATACTGAATTATTGCTCAATCGAGCAAGACTTACTAAATATACTGAATTATTGCTCAATCA
* * ** * *
46821955 AGCAAGACTTACTGAATATACTGAATTGTTGCTCAATCGAGGAAAACTTACT
66 AGCAAAACTTACCGAATATACTGAA-TACTGCTCAATCGAGCAAAACCTACT
* *
46822007 GAATATACTGAATTGTTGCTCAATCGAGCAA-AGCTTACTAAATATACTGCAA-TGTTGCTCAAT
1 GAATATACTGAATTATTGCTCAATCGAGCAAGA-CTTACTAAATATACTG-AATTATTGCTCAAT
46822070 CAAGCAAAACTTACCGAATATACTGAATACTGCTCAATCGAGCAAAACCTACT
64 CAAGCAAAACTTACCGAATATACTGAATACTGCTCAATCGAGCAAAACCTACT
46822123 GAAAATATACTGAAT
1 G--AATATACTGAAT
46822138 ACTATTCCAG
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
116 24 0.21
117 79 0.68
118 14 0.12
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (116 bp):
GAATATACTGAATTATTGCTCAATCGAGCAAGACTTACTAAATATACTGAATTATTGCTCAATCA
AGCAAAACTTACCGAATATACTGAATACTGCTCAATCGAGCAAAACCTACT
Found at i:46822185 original size:117 final size:117
Alignment explanation
Indices: 46821890--46822189 Score: 281
Period size: 117 Copynumber: 2.6 Consensus size: 117
46821880 ATGGAATACC
** * * * ** *
46821890 GAATATACTGAATTATTGCTCAATTGAGCAAGACTTACTAAATATATTG-AATTATTGCTCAATC
1 GAATATACTGAATTATTGCTCAAGCGAGAAAAACTTACTAAATATACTGCAA-TGCTACTCAATC
* * ** * *
46821954 AAGCAAGACTTACTGAATATACTGAATTGTTGCTCAATCGAGGAAAACTTACT
65 AAGCAAAACTTACCGAATATACTGAATTACTGCTCAATCGAGCAAAACCTACT
* * * * * *
46822007 GAATATACTGAATTGTTGCTCAATCGAGCAAAGCTTACTAAATATACTGCAATGTTGCTCAATCA
1 GAATATACTGAATTATTGCTCAAGCGAGAAAAACTTACTAAATATACTGCAATGCTACTCAATCA
46822072 AGCAAAACTTACCGAATATACTGAA-TACTGCTCAATCGAGCAAAACCTACT
66 AGCAAAACTTACCGAATATACTGAATTACTGCTCAATCGAGCAAAACCTACT
* * * *
46822123 GAAAATATACTGAATACTATT-C-C-AGCGAGTAAAAATTTACTGATTATACTG-AGTGCTACTC
1 G--AATATACTGAAT--TATTGCTCAAGCGAG-AAAAACTTACTAAATATACTGCAATGCTACTC
46822184 AA-CAAG
61 AATCAAG
46822190 AGTTATACAC
Statistics
Matches: 155, Mismatches: 22, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
116 27 0.17
117 93 0.60
118 31 0.20
119 1 0.01
120 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (117 bp):
GAATATACTGAATTATTGCTCAAGCGAGAAAAACTTACTAAATATACTGCAATGCTACTCAATCA
AGCAAAACTTACCGAATATACTGAATTACTGCTCAATCGAGCAAAACCTACT
Found at i:46823206 original size:17 final size:17
Alignment explanation
Indices: 46823165--46823206 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
46823155 GTATTACTTG
* *
46823165 TAATTATGGAATTTAAT
1 TAATTATTGAATGTAAT
46823182 TAATTATTGAATGTAAT
1 TAATTATTGAATGTAAT
*
46823199 TCATTATT
1 TAATTATT
46823207 AATTGTTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TAATTATTGAATGTAAT
Found at i:46831003 original size:16 final size:18
Alignment explanation
Indices: 46830972--46831004 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46830962 ATGTGCATGA
46830972 ATAATTTATGATATGATT
1 ATAATTTATGATATGATT
46830990 ATAATTT-TGA-ATGAT
1 ATAATTTATGATATGAT
46831005 ACAAGGTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 3 0.20
18 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (18 bp):
ATAATTTATGATATGATT
Found at i:46833627 original size:24 final size:24
Alignment explanation
Indices: 46833600--46833708 Score: 94
Period size: 24 Copynumber: 4.5 Consensus size: 24
46833590 TAACTCACAA
* *
46833600 GAGCGTCCCGTTATTAGCTCTCAT
1 GAGCATCCCGATATTAGCTCTCAT
* *
46833624 GAGCATCCCGATATTGGCTCTCTT
1 GAGCATCCCGATATTAGCTCTCAT
* * *
46833648 GAGC-TACCCAATATATGGCTCTCAC
1 GAGCAT-CCCGATAT-TAGCTCTCAT
* * * *
46833673 GAGCCTCCCGTTAATAGCTCTTAT
1 GAGCATCCCGATATTAGCTCTCAT
46833697 GAGCATCCCGAT
1 GAGCATCCCGAT
46833709 TTCGTTGTGA
Statistics
Matches: 67, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
23 1 0.01
24 48 0.72
25 17 0.25
26 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.29
Consensus pattern (24 bp):
GAGCATCCCGATATTAGCTCTCAT
Found at i:46833899 original size:25 final size:24
Alignment explanation
Indices: 46833865--46833912 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
46833855 GGAGTGACCC
*
46833865 GTTATTGGC-TGACATGAGCTTCCA
1 GTTATTGGCTTGA-AAGAGCTTCCA
46833889 GTTATATGGCTTGAAAGAGCTTCC
1 GTTAT-TGGCTTGAAAGAGCTTCC
46833913 CGATTATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 13 0.62
26 3 0.14
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (24 bp):
GTTATTGGCTTGAAAGAGCTTCCA
Found at i:46843487 original size:50 final size:50
Alignment explanation
Indices: 46843423--46843651 Score: 228
Period size: 50 Copynumber: 4.6 Consensus size: 50
46843413 AAAGAGGTCC
* *
46843423 TAAGACCATTTCTGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCCATG
* * * * **
46843473 TAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCCCG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCCATG
* * * * * **
46843523 TAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCCATG
* * ** **
46843573 TAAGACCATATCTGGGATATGGCATTGGCAGTACAGA-AA-ACATCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCACCA-AGATAAGAGGTCCCATG
* *
46843622 TAAGACCATGTCTAGGACATGGCTTTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
46843652 TGTTATTATC
Statistics
Matches: 148, Mismatches: 30, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
49 34 0.23
50 112 0.76
51 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCCATG
Found at i:46843601 original size:100 final size:100
Alignment explanation
Indices: 46843423--46843602 Score: 254
Period size: 100 Copynumber: 1.8 Consensus size: 100
46843413 AAAGAGGTCC
* * ** *
46843423 TAAGACCATTTCTGGGACATGGCGTTGGCACCAAGATAAGAGGTCCCATGTAAGACCATGTCTGG
1 TAAGACCATTTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTGG
*
46843488 GACATGGCGTTGGCATCGAGATGAGAGGTCCCCCG
66 GACATGGCATTGGCATCGAGATGAGAGGTCCCCCG
* * *
46843523 TAAGACCATGTT-TGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATCTG
1 TAAGACCAT-TTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTG
*
46843587 GGATATGGCATTGGCA
65 GGACATGGCATTGGCA
46843603 GTACAGAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
100 67 0.97
101 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (100 bp):
TAAGACCATTTCTGGGACATGGCATGGGCACCAAGATAAGAACTCCCATGTAAGACCATATCTGG
GACATGGCATTGGCATCGAGATGAGAGGTCCCCCG
Found at i:46860869 original size:20 final size:20
Alignment explanation
Indices: 46860844--46860884 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
46860834 GAAATTTTTC
46860844 CGTATCAATAGTAACTTATA
1 CGTATCAATAGTAACTTATA
46860864 CGTATCAATAGTAACTTATA
1 CGTATCAATAGTAACTTATA
46860884 C
1 C
46860885 ATGTTAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (20 bp):
CGTATCAATAGTAACTTATA
Found at i:46861109 original size:23 final size:23
Alignment explanation
Indices: 46861080--46861138 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
46861070 CCGAGCTGAT
* **
46861080 AAACGGTAAGCTCTATCTAGCTG
1 AAACGGTAAGCTCCATAGAGCTG
*
46861103 AAACGGTAAGCTCCGTAGAGCTG
1 AAACGGTAAGCTCCATAGAGCTG
46861126 AAACGGTAAGCTC
1 AAACGGTAAGCTC
46861139 ATACAAGCTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (23 bp):
AAACGGTAAGCTCCATAGAGCTG
Found at i:46861147 original size:23 final size:22
Alignment explanation
Indices: 46861080--46861148 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 22
46861070 CCGAGCTGAT
*
46861080 AAACGGTAAGCTCTATCTAGCTG
1 AAACGGTAAGCTCTA-CAAGCTG
*
46861103 AAACGGTAAGCTCCGTA-GAGCTG
1 AAACGGTAAGCT-C-TACAAGCTG
46861126 AAACGGTAAGCTCATACAAGCTG
1 AAACGGTAAGCTC-TACAAGCTG
46861149 TGGTGAGTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.08
23 34 0.85
24 1 0.03
25 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
AAACGGTAAGCTCTACAAGCTG
Found at i:46861347 original size:72 final size:72
Alignment explanation
Indices: 46861227--46861371 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
46861217 ACGATTTTCT
* *
46861227 AAAGTTCAAACGGGCTCGGTATTATCCAATTTCATCAATTAAGCAATGAAAAATCAATAGCTCAA
1 AAAGTTCAAACGGGCTCAGTATTATCCAATTTCATCAATTAAGAAATGAAAAATCAATAGCTCAA
46861292 TTTCTCA
66 TTTCTCA
46861299 AAAGTTCAAACGGGCTCAGTATTATCCAATTTCATCAATTAAGAAATGAAAAATCAATAGCTCAA
1 AAAGTTCAAACGGGCTCAGTATTATCCAATTTCATCAATTAAGAAATGAAAAATCAATAGCTCAA
46861364 TTTCTCA
66 TTTCTCA
46861371 A
1 A
46861372 TTCATATGCG
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (72 bp):
AAAGTTCAAACGGGCTCAGTATTATCCAATTTCATCAATTAAGAAATGAAAAATCAATAGCTCAA
TTTCTCA
Done.