Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 146 of 210
Found at i:48462615 original size:26 final size:27
Alignment explanation
Indices: 48462585--48462644 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 27
48462575 AACCATAAAA
48462585 TCAAACATTAA-A-ACAAATATAACATC
1 TCAAACATTAATATACAAATATAA-ATC
* *
48462611 TCAAA-ATTAATATCCAAATATAAGTC
1 TCAAACATTAATATACAAATATAAATC
48462637 TCAAACAT
1 TCAAACAT
48462645 CCATTACGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 5 0.17
26 13 0.45
27 11 0.38
ACGTcount: A:0.53, C:0.18, G:0.02, T:0.27
Consensus pattern (27 bp):
TCAAACATTAATATACAAATATAAATC
Found at i:48473521 original size:24 final size:24
Alignment explanation
Indices: 48473480--48473526 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
48473470 TATTAACAAC
* * *
48473480 TACATGTACATCTTCATACATATA
1 TACATATACATATACATACATATA
*
48473504 TACATATACATATACATATATAT
1 TACATATACATATACATACATAT
48473527 TATTATTCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (24 bp):
TACATATACATATACATACATATA
Found at i:48474096 original size:41 final size:41
Alignment explanation
Indices: 48474003--48474188 Score: 214
Period size: 41 Copynumber: 4.5 Consensus size: 41
48473993 TTTAAAATGA
* * * *
48474003 TTCACCGGCATGT-AGCCTGCTAGGCTTAAAGCCTG-ATTCAG
1 TTCACCGGCAT-TAAGCCTGCTAGACGTAAAGTCTGAATT-AT
** * * *
48474044 AACACCGGCATTAGGCCTGCTAGACGTAAAGTTTGAAATAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAT
*
48474085 TTCACCAGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAT
* *
48474126 TTCACTGGCATTAAGCCTGCTAGATGTAAAGTCTGAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAT
**
48474167 TTCAGTGGCATTAAGCCTGCTA
1 TTCACCGGCATTAAGCCTGCTA
48474189 AGAATAGAGC
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.01
41 121 0.98
42 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAT
Found at i:48474203 original size:82 final size:82
Alignment explanation
Indices: 48474050--48474204 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 82
48474040 TCAGAACACC
* * *
48474050 GGCATTAGGCCTGCTAGACGTAAAGTTTGAAATATTTCACCAGCATTAAGCCTGCTAGACGTAAA
1 GGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACCAGCATTAAGCCTGCTAGACATAAA
*
48474115 GTCTGAATTATTTCACT
66 GCCTGAATTATTTCACT
* * *** *
48474132 GGCATTAAGCCTGCTAGATGTAAAGTCTGAATTATTTCAGTGGCATTAAGCCTGCTAAGA-ATAG
1 GGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACCAGCATTAAGCCTGCT-AGACATAA
48474196 AGCCTGAAT
65 AGCCTGAAT
48474205 AACTCAGATA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
82 59 0.95
83 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (82 bp):
GGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACCAGCATTAAGCCTGCTAGACATAAA
GCCTGAATTATTTCACT
Found at i:48474204 original size:41 final size:41
Alignment explanation
Indices: 48474050--48474188 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 41
48474040 TCAGAACACC
* * * *
48474050 GGCATTAGGCCTGCTAGACGTAAAGTTTGAAATATTTCACC
1 GGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
*
48474091 AGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
1 GGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
* *
48474132 GGCATTAAGCCTGCTAGATGTAAAGTCTGAATTATTTCAGT
1 GGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
48474173 GGCATTAAGCCTGCTA
1 GGCATTAAGCCTGCTA
48474189 AGAATAGAGC
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 90 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (41 bp):
GGCATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACT
Found at i:48474384 original size:61 final size:61
Alignment explanation
Indices: 48474301--48474431 Score: 156
Period size: 61 Copynumber: 2.1 Consensus size: 61
48474291 ACATGAATAA
* * * * *
48474301 ATATATATAATTCATAACATTAAGTTTAGCTCAAAGAACTTGTATA-TTACATTCGAACCTC
1 ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTA-ACCTACATTCGAACCAC
* * * * *
48474362 ATATGTATAGTTCAAAACATTAAATTCAGCTCAATGAATTTGTAACCTATATTCGAACCAC
1 ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
48474423 ATATATATA
1 ATATATATA
48474432 TATATATAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 1 0.02
61 57 0.98
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.35
Consensus pattern (61 bp):
ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
Found at i:48474589 original size:61 final size:62
Alignment explanation
Indices: 48474431--48474590 Score: 175
Period size: 65 Copynumber: 2.5 Consensus size: 62
48474421 ACATATATAT
* *
48474431 ATATATAT-AAATGTATACATCAAATTCAACTCAAGAGATTTTGCAATCTATGTTTGAACCAC
1 ATATATATGAAAT-TATACATCAAATTCAACTCAAGAGATCTTGCAATATATGTTTGAACCAC
* * * *
48474493 ATACGTATAAGAAATTTATATATTAAATTCAACTCAAGA-A-CTTG-AATATATTTATTCGAACC
1 ATA--TATATGAAA-TTATACATCAAATTCAACTCAAGAGATCTTGCAATATATGT-TT-GAACC
48474555 AC
61 AC
*
48474557 ATATATATGAAATTATACATCAAATTCGACTCAA
1 ATATATATGAAATTATACATCAAATTCAACTCAA
48474591 AGAAGTTAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
61 19 0.23
62 18 0.22
63 5 0.06
64 15 0.18
65 24 0.29
66 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (62 bp):
ATATATATGAAATTATACATCAAATTCAACTCAAGAGATCTTGCAATATATGTTTGAACCAC
Found at i:48475380 original size:17 final size:17
Alignment explanation
Indices: 48475348--48475381 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
48475338 CGAAGTCACG
48475348 ATCACAAAAACGTAAAA
1 ATCACAAAAACGTAAAA
48475365 ATCATCAAAAAC-TAAAA
1 ATCA-CAAAAACGTAAAA
48475382 CCAAAACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.65, C:0.18, G:0.03, T:0.15
Consensus pattern (17 bp):
ATCACAAAAACGTAAAA
Found at i:48482058 original size:41 final size:41
Alignment explanation
Indices: 48482006--48482148 Score: 189
Period size: 41 Copynumber: 3.5 Consensus size: 41
48481996 TGATTCAGAA
* *
48482006 CACTGGCATTAAGCGTGCTAGATGTAAAGTCTGAAATATTT
1 CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
* * * *
48482047 CACCGGTATTAAGCCTGTTAGACGTAAAGTCTGAATTATTT
1 CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
* *
48482088 CACTGGCATTTAGCCTGCTAGACGGAAAGTCT-AAATTATTT
1 CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAA-TATTT
*
48482129 CAGTGGCATTAAGCCTGCTA
1 CACTGGCATTAAGCCTGCTA
48482149 AGCACAGAGC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 2 0.02
41 85 0.98
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (41 bp):
CACTGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTT
Found at i:48482386 original size:61 final size:61
Alignment explanation
Indices: 48482261--48482391 Score: 138
Period size: 61 Copynumber: 2.1 Consensus size: 61
48482251 ACATGAATAA
** * * * * *
48482261 ATATATATAATTCATAACATTAAGTTTAGCTCAAAGAACTTGTATATTACATTCAAACCTC
1 ATATATATAGCTCAAAACATTAAATTCAGCTCAAAGAACTTGTATACTACATTCAAACCAC
* * * * *
48482322 ATATGTATAGCTCAAAACATTAAATTCAGCTCAATGAATTTGTA-AGCTATATTCGAACCAC
1 ATATATATAGCTCAAAACATTAAATTCAGCTCAAAGAACTTGTATA-CTACATTCAAACCAC
48482383 ATATATATA
1 ATATATATA
48482392 TAAATGTATA
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
60 1 0.02
61 55 0.98
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.34
Consensus pattern (61 bp):
ATATATATAGCTCAAAACATTAAATTCAGCTCAAAGAACTTGTATACTACATTCAAACCAC
Found at i:48492008 original size:33 final size:33
Alignment explanation
Indices: 48491933--48492008 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
48491923 CTGTTAGGAC
* * * *
48491933 AGTAAATACCAAACAAAGTAAGTCCGCTAAGGT
1 AGTAAACACGAAACAAAGTAAATCCGCTAAGAT
* *
48491966 AGTAAACACGAAATAAAGTAAATCCTCTAAGAT
1 AGTAAACACGAAACAAAGTAAATCCGCTAAGAT
48491999 AGTAAACACG
1 AGTAAACACG
48492009 TGTAATGCCC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.18
Consensus pattern (33 bp):
AGTAAACACGAAACAAAGTAAATCCGCTAAGAT
Found at i:48494612 original size:11 final size:12
Alignment explanation
Indices: 48494596--48494628 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
48494586 AATTTCACAA
48494596 AAAATTTCG-TG
1 AAAATTTCGTTG
48494607 AAAATTTCGTTTG
1 AAAATTTCG-TTG
48494620 AAAATTTCG
1 AAAATTTCG
48494629 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
13 11 0.55
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (12 bp):
AAAATTTCGTTG
Found at i:48498974 original size:19 final size:20
Alignment explanation
Indices: 48498932--48498974 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
48498922 TCATGCTTTC
*
48498932 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
48498952 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
48498970 TATTC
1 TATTC
48498975 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:48499117 original size:45 final size:45
Alignment explanation
Indices: 48499053--48499141 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
48499043 AACGGATACT
* * *
48499053 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTC
48499098 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGT
48499142 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTC
Found at i:48502840 original size:960 final size:960
Alignment explanation
Indices: 48500981--48502900 Score: 3797
Period size: 960 Copynumber: 2.0 Consensus size: 960
48500971 ATTTGGATGA
48500981 TATCTCTGTTTATTTATATTGAAAATAGACTATTTACGTATTTTAACCATATAAATTATAACCCA
1 TATCTCTGTTTATTTATATTGAAAATAGACTATTTACGTATTTTAACCATATAAATTATAACCCA
48501046 TAATTATTTTTGTACAATTTTTTATGATTTTTCAAATTCGAAACAGGGGAACCCGAAATCATTCT
66 TAATTATTTTTGTACAATTTTTTATGATTTTTCAAATTCGAAACAGGGGAACCCGAAATCATTCT
48501111 GACATTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTACTTACACCTTTTCTCT
131 GACATTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTACTTACACCTTTTCTCT
48501176 TATGAGAAACTAGACTCAGTAAGATTTAATTCCATATTTTGTTCATTATGTAATTTCATTTACAC
196 TATGAGAAACTAGACTCAGTAAGATTTAATTCCATATTTTGTTCATTATGTAATTTCATTTACAC
48501241 AATTTATGGTGATTTTTCAAATTTAACCTACTGCTGCTGTCCAAAACTGTTTTAGTGCAAAATGC
261 AATTTATGGTGATTTTTCAAATTTAACCTACTGCTGCTGTCCAAAACTGTTTTAGTGCAAAATGC
48501306 TAATTACTAGGTTTATAACTTCCTTATTCCGTTTCTCTATAATAATTCACATCATTTTCACTTAT
326 TAATTACTAGGTTTATAACTTCCTTATTCCGTTTCTCTATAATAATTCACATCATTTTCACTTAT
48501371 TTCTCTTCACTAATATATCACAAACATAAGACTTTATATAATAAAACTCTACTATAACATCTTTT
391 TTCTCTTCACTAATATATCACAAACATAAGACTTTATATAATAAAACTCTACTATAACATCTTTT
48501436 CCATGCTATTTCATTAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACCTTGTCCT
456 CCATGCTATTTCATTAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACCTTGTCCT
48501501 ATTGATTTCAATCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCCAACTTGA
521 ATTGATTTCAATCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCCAACTTGA
48501566 TATTCTAGCTCCCCATAGTCTCCTTGTTATCTTTCTCTCTTGATGGATATAGAAATTCTTTTGAT
586 TATTCTAGCTCCCCATAGTCTCCTTGTTATCTTTCTCTCTTGATGGATATAGAAATTCTTTTGAT
48501631 TTCTAGGTGAAAATGGTAAGTTTTTGGAAGAAGGACCAAATTATAAAGAAAGCAAAACTTTCCTT
651 TTCTAGGTGAAAATGGTAAGTTTTTGGAAGAAGGACCAAATTATAAAGAAAGCAAAACTTTCCTT
48501696 CTTTCTCTTTTCTCCGCACGTTGGATGCATGGAAGATGATGGGTTGGTTGCTTTTCATCTTTGTT
716 CTTTCTCTTTTCTCCGCACGTTGGATGCATGGAAGATGATGGGTTGGTTGCTTTTCATCTTTGTT
48501761 TCCACATATATATATACTAATTAAATTAATAATAAAATATCATTTAAAAATCAAATTAAAATATT
781 TCCACATATATATATACTAATTAAATTAATAATAAAATATCATTTAAAAATCAAATTAAAATATT
48501826 AATAAACTAATATTTATTTAATTAATTAATCTAAAAAATTGCCAACATCATCATTGCCTTCTAGA
846 AATAAACTAATATTTATTTAATTAATTAATCTAAAAAATTGCCAACATCATCATTGCCTTCTAGA
48501891 TTTCTCGCTCTTCTAATTGATCATTTTGCCCTTTATGTTCTTTAAAAATT
911 TTTCTCGCTCTTCTAATTGATCATTTTGCCCTTTATGTTCTTTAAAAATT
48501941 TATCTCTGTTTATTTATATTGAAAATAGACTATTTACGTATTTTAACCATATAAATTATAACCCA
1 TATCTCTGTTTATTTATATTGAAAATAGACTATTTACGTATTTTAACCATATAAATTATAACCCA
48502006 TAATTATTTTTGTACAATTTTTTATGATTTTTCAAATTCGAAACAGGGGAACCCGAAATCATTCT
66 TAATTATTTTTGTACAATTTTTTATGATTTTTCAAATTCGAAACAGGGGAACCCGAAATCATTCT
48502071 GACATTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTACTTACACCTTTTCTCT
131 GACATTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTACTTACACCTTTTCTCT
48502136 TATGAGAAACTAGACTCAGTAAGATTTAATTCCATATTTTGTTCATTATGTAATTTCATTTACAC
196 TATGAGAAACTAGACTCAGTAAGATTTAATTCCATATTTTGTTCATTATGTAATTTCATTTACAC
48502201 AATTTATGGTGATTTTTCAAATTTAACCTACTGCTGCTGTCCAAAACTGTTTTAGTGCAAAATGC
261 AATTTATGGTGATTTTTCAAATTTAACCTACTGCTGCTGTCCAAAACTGTTTTAGTGCAAAATGC
48502266 TAATTACTAGGTTTATAACTTCCTTATTCCGTTTCTCTATAATAATTCACATCATTTTCACTTAT
326 TAATTACTAGGTTTATAACTTCCTTATTCCGTTTCTCTATAATAATTCACATCATTTTCACTTAT
48502331 TTCTCTTCACTAATATATCACAAACATAAGACTTTATATAATAAAACTCTACTATAACATCTTTT
391 TTCTCTTCACTAATATATCACAAACATAAGACTTTATATAATAAAACTCTACTATAACATCTTTT
48502396 CCATGCTATTTCATTAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACCTTGTCCT
456 CCATGCTATTTCATTAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACCTTGTCCT
* *
48502461 ATTGATTTCAATCTTTAAACTTGATTTT-TCTCTCCTCCAGCTTCAATTTCTTTACTCCAACTTG
521 ATTGATTTCAATCTTT-AACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCCAACTTG
48502525 ATATTCTAGCTCCCCATAGTCTCCTTGTTATCTTTCTCTCTTGATGGATATAGAAATTCTTTTGA
585 ATATTCTAGCTCCCCATAGTCTCCTTGTTATCTTTCTCTCTTGATGGATATAGAAATTCTTTTGA
48502590 TTTCTAGGTGAAAATGGTAAGTTTTTGGAAGAAGGACCAAATTATAAAGAAAGCAAAACTTTCCT
650 TTTCTAGGTGAAAATGGTAAGTTTTTGGAAGAAGGACCAAATTATAAAGAAAGCAAAACTTTCCT
48502655 TCTTTCTCTTTTCTCCGCACGTTGGATGCATGGAAGATGATGGGTTGGTTGCTTTTCATCTTTGT
715 TCTTTCTCTTTTCTCCGCACGTTGGATGCATGGAAGATGATGGGTTGGTTGCTTTTCATCTTTGT
48502720 TTCCACATATATATATACTAATTAAATTAATAATAAAATATCATTTAAAAATCAAATTAAAATAT
780 TTCCACATATATATATACTAATTAAATTAATAATAAAATATCATTTAAAAATCAAATTAAAATAT
48502785 TAATAAACTAATATTTATTTAATTAATTAATCTAAAAAATTGCCAACATCATCATTGCCTTCTAG
845 TAATAAACTAATATTTATTTAATTAATTAATCTAAAAAATTGCCAACATCATCATTGCCTTCTAG
*
48502850 ATTTCTCGCTCTTCTAATTGATCATTTTGCCCTTTATGTTCTTTTAAAATT
910 ATTTCTCGCTCTTCTAATTGATCATTTTGCCCTTTATGTTCTTTAAAAATT
48502901 CCATCATTGA
Statistics
Matches: 956, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
960 945 0.99
961 11 0.01
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.41
Consensus pattern (960 bp):
TATCTCTGTTTATTTATATTGAAAATAGACTATTTACGTATTTTAACCATATAAATTATAACCCA
TAATTATTTTTGTACAATTTTTTATGATTTTTCAAATTCGAAACAGGGGAACCCGAAATCATTCT
GACATTGTCTCACAAAATCTATTATATCTCATGATTTACAATTCCATTACTTACACCTTTTCTCT
TATGAGAAACTAGACTCAGTAAGATTTAATTCCATATTTTGTTCATTATGTAATTTCATTTACAC
AATTTATGGTGATTTTTCAAATTTAACCTACTGCTGCTGTCCAAAACTGTTTTAGTGCAAAATGC
TAATTACTAGGTTTATAACTTCCTTATTCCGTTTCTCTATAATAATTCACATCATTTTCACTTAT
TTCTCTTCACTAATATATCACAAACATAAGACTTTATATAATAAAACTCTACTATAACATCTTTT
CCATGCTATTTCATTAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACCTTGTCCT
ATTGATTTCAATCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCCAACTTGA
TATTCTAGCTCCCCATAGTCTCCTTGTTATCTTTCTCTCTTGATGGATATAGAAATTCTTTTGAT
TTCTAGGTGAAAATGGTAAGTTTTTGGAAGAAGGACCAAATTATAAAGAAAGCAAAACTTTCCTT
CTTTCTCTTTTCTCCGCACGTTGGATGCATGGAAGATGATGGGTTGGTTGCTTTTCATCTTTGTT
TCCACATATATATATACTAATTAAATTAATAATAAAATATCATTTAAAAATCAAATTAAAATATT
AATAAACTAATATTTATTTAATTAATTAATCTAAAAAATTGCCAACATCATCATTGCCTTCTAGA
TTTCTCGCTCTTCTAATTGATCATTTTGCCCTTTATGTTCTTTAAAAATT
Found at i:48503835 original size:50 final size:49
Alignment explanation
Indices: 48503665--48503885 Score: 230
Period size: 50 Copynumber: 4.4 Consensus size: 49
48503655 TATCGATGAA
* * *
48503665 CACGTGTGTAGTACTAAT-TGATAGGCTACTACGTGAATCGATAAA-TGATGGT
1 CACGTGTGTAGTACT-ATGTGA-AGGCTACTACGTGTACCGA-AAACT--TGAT
* * * * *
48503717 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACTGAAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAA-C-TTGAT
*
48503768 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-AAAACTTGAT
* * * *
48503818 CATGGGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAA-AACTTGAT
48503868 CACGTGTGTAGTACTATG
1 CACGTGTGTAGTACTATG
48503886 ATATTTGTTG
Statistics
Matches: 144, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
49 2 0.01
50 65 0.45
51 55 0.38
52 21 0.15
53 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAACTTGAT
Found at i:48503842 original size:101 final size:102
Alignment explanation
Indices: 48503665--48503885 Score: 263
Period size: 101 Copynumber: 2.2 Consensus size: 102
48503655 TATCGATGAA
* ** * *
48503665 CACGTGTGTAGTACTAAT-TGATAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGT
1 CACGTGTGTAGTACT-ATGTGATAGGCTACTACGTGAACCGATAAAACATGATCACAGGTGTAGT
* *
48503729 ACTAAGTGAAGGCTACTATGTGTA-CTGAAA-AGCTTTGGT
65 ACTAAGTGAAGGCTACTACGTGTATC-GAAAGA-C-TTGAT
* **
48503768 CACGTGTGTAGTACTATGTGA-AGGCTACTACGTGAACCG-TAAAACTTGATCATGGGTGTAGTA
1 CACGTGTGTAGTACTATGTGATAGGCTACTACGTGAACCGATAAAACATGATCACAGGTGTAGTA
* *
48503831 CTATGTGAAGGCTACTACGTGTATCGAATGACTTGAT
66 CTAAGTGAAGGCTACTACGTGTATCGAAAGACTTGAT
48503868 CACGTGTGTAGTACTATG
1 CACGTGTGTAGTACTATG
48503886 ATATTTGTTG
Statistics
Matches: 103, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
100 22 0.21
101 42 0.41
102 21 0.20
103 18 0.17
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGATAGGCTACTACGTGAACCGATAAAACATGATCACAGGTGTAGTA
CTAAGTGAAGGCTACTACGTGTATCGAAAGACTTGAT
Found at i:48505671 original size:26 final size:27
Alignment explanation
Indices: 48505642--48505694 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
48505632 ATGACCGTAA
48505642 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
*
48505668 TGCCCCTCGAGGGTAAATGACTGATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
48505695 GTGTTATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGACTGATTT
Found at i:48508754 original size:78 final size:78
Alignment explanation
Indices: 48508529--48508809 Score: 282
Period size: 77 Copynumber: 3.6 Consensus size: 78
48508519 ATAAATTTTA
* * * * *
48508529 TTTTGTTTCAAACATAAATTCAATTGAACAATCCTATTTCAGAATTTTATTCCTGCCATTTAATA
1 TTTTGTTTCAAACAGAAAATCAATTGAACAATCATGTTTCAGGATTTTATTCCTGCCATTTAATA
*
48508594 GGATTTGTTTTA-
66 GGATTTGTTTGAT
* * * * *
48508606 TTTTGTTTCAAATAGAAAAACAATTGAATAATCATGTTTTAGGATTTTATTCCTGCCATTTAACA
1 TTTTGTTTCAAACAGAAAATCAATTGAACAATCATGTTTCAGGATTTTATTCCTGCCATTTAATA
*
48508671 AGATTTGTTTGAT
66 GGATTTGTTTGAT
* * ** * ** *
48508684 TTTTGTTTTAAACAGAAAATCAATTTAACAATTTTGTTTCAGGATTTTATTCCTGTCGCTTCATA
1 TTTTGTTTCAAACAGAAAATCAATTGAACAATCATGTTTCAGGATTTTATTCCTGCCATTTAATA
48508749 GGATTT-TTTCGATCTT
66 GGATTTGTTT-GA---T
* * *
48508765 TTTTTTTTCAAACAG-AAATCAATTGAATAATTCA-GTTTCACGATT
1 TTTTGTTTCAAACAGAAAATCAATTGAACAA-TCATGTTTCAGGATT
48508810 CTTTTCTTGT
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
77 68 0.41
78 59 0.36
80 23 0.14
81 15 0.09
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (78 bp):
TTTTGTTTCAAACAGAAAATCAATTGAACAATCATGTTTCAGGATTTTATTCCTGCCATTTAATA
GGATTTGTTTGAT
Found at i:48516634 original size:20 final size:20
Alignment explanation
Indices: 48516605--48516655 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
48516595 GTATCGATTT
*
48516605 GGTATCGATACT-TTTCTTAA
1 GGTATCGATA-TATTTCCTAA
*
48516625 GGTATTGATATATTTCCTAA
1 GGTATCGATATATTTCCTAA
*
48516645 GGTATCAATAT
1 GGTATCGATAT
48516656 TCATACTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (20 bp):
GGTATCGATATATTTCCTAA
Found at i:48519236 original size:58 final size:58
Alignment explanation
Indices: 48519146--48519261 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
48519136 GTGAAGAAGA
48519146 AAGAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
1 AAGAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
* *
48519204 AAGAATTATGAAAAGGAATGTTGGTAAAGCTCTAAAATGCACCACTAATAATGATAGT
1 AAGAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
48519262 GAATCAAGTG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (58 bp):
AAGAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
Found at i:48520488 original size:32 final size:33
Alignment explanation
Indices: 48520426--48520488 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
48520416 TATTTATGCA
*
48520426 TTAAATTGGAAATAATTTTTATATAGGGGGAGC
1 TTAAATTGGAAATAATTTTTATATAAGGGGAGC
48520459 TTAAATT-GAAATTGAA-TTTTAT-TAAGGGGA
1 TTAAATTGGAAA-T-AATTTTTATATAAGGGGA
48520489 CAATCTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
32 11 0.41
33 14 0.52
34 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (33 bp):
TTAAATTGGAAATAATTTTTATATAAGGGGAGC
Found at i:48520861 original size:20 final size:20
Alignment explanation
Indices: 48520836--48520885 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
48520826 TATCGATTTA
*
48520836 GTATCGATACT-TGTCTTAAG
1 GTATCGATA-TATGTCCTAAG
*
48520856 GTATCGATATATTTCCTAAG
1 GTATCGATATATGTCCTAAG
48520876 GTATCGATAT
1 GTATCGATAT
48520886 TCCTACTCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (20 bp):
GTATCGATATATGTCCTAAG
Found at i:48520890 original size:17 final size:19
Alignment explanation
Indices: 48520852--48520890 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
48520842 ATACTTGTCT
48520852 TAAGGTATCGATATATTTCC
1 TAAGGTATCGA-ATATTTCC
48520872 TAAGGTATCG-ATA-TTCC
1 TAAGGTATCGAATATTTCC
48520889 TA
1 TA
48520891 CTCCAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
20 10 0.53
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TAAGGTATCGAATATTTCC
Found at i:48524016 original size:26 final size:26
Alignment explanation
Indices: 48523986--48524038 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
48523976 TTATTGTTAG
*
48523986 TTAAATGTTAGTATATTGAGATATTT
1 TTAAATATTAGTATATTGAGATATTT
* **
48524012 TTAAATATTATTATATTGTTATATTT
1 TTAAATATTAGTATATTGAGATATTT
48524038 T
1 T
48524039 AGTTTATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (26 bp):
TTAAATATTAGTATATTGAGATATTT
Found at i:48533361 original size:35 final size:35
Alignment explanation
Indices: 48533316--48533436 Score: 104
Period size: 35 Copynumber: 3.5 Consensus size: 35
48533306 GGGTGTTATA
* * *
48533316 GCCCTGAAGGACCTATATATTGTTTATATGGTGTT
1 GCCCCGAAGGACCTATATATAGTTTACATGGTGTT
* * *
48533351 GCCCCGAAGGACCTGTATATAGTTTACACGG-ATT
1 GCCCCGAAGGACCTATATATAGTTTACATGGTGTT
* * *
48533385 -CACCTTGAAGGA-CTAGTATATCGTTTACATGGTGTC
1 GC-CC-CGAAGGACCTA-TATATAGTTTACATGGTGTT
*
48533421 GCCACGAAGGACCTAT
1 GCCCCGAAGGACCTAT
48533437 TGATAACCAT
Statistics
Matches: 66, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
33 1 0.02
34 6 0.09
35 53 0.80
36 5 0.08
37 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (35 bp):
GCCCCGAAGGACCTATATATAGTTTACATGGTGTT
Found at i:48542830 original size:26 final size:26
Alignment explanation
Indices: 48542792--48542847 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
48542782 AACACACTAA
* *
48542792 TATCCCAGTAAAGCTGCCACTAATAG
1 TATCCCAGCAAAGCTGCCACTAACAG
* *
48542818 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCCCAGCAAAGCTGCCACTAACAG
48542844 TATC
1 TATC
48542848 TTCCTCCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (26 bp):
TATCCCAGCAAAGCTGCCACTAACAG
Found at i:48543032 original size:27 final size:27
Alignment explanation
Indices: 48543009--48543338 Score: 330
Period size: 27 Copynumber: 12.3 Consensus size: 27
48542999 AGAGGTATAA
48543009 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** * * *
48543036 TGGTCAGTTTACCCTATAGGGTTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
48543063 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * * *
48543090 TAATCA-TTTAACCTAT-GGGGCATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48543115 TAGTC-TTTATACCCTATGAGGGTATTT
1 CAGTCATTT-TACCCTATGGGGGTATTT
*
48543142 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48543169 CAATCATTTTACCCTATGGAGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48543196 -TGTTCATTTTACCCTATAGGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* * *
48543223 CGGTCATTTTATCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48543250 CTGTCATTTTACCTTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** * * *
48543277 TGGTCATTTTACCTTATAGGGGTATTA
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
48543304 CGGTCATTTTATCCTAT-GGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
48543330 C-GATCATTT
1 CAG-TCATTT
48543339 ATTGACCTCT
Statistics
Matches: 252, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
25 14 0.06
26 31 0.12
27 203 0.81
28 4 0.02
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGGGGGTATTT
Found at i:48543243 original size:81 final size:81
Alignment explanation
Indices: 48543012--48543338 Score: 439
Period size: 81 Copynumber: 4.1 Consensus size: 81
48543002 GGTATAACAG
* *
48543012 TCATTTTACCCTATGGGGGTATTTTGGTCAGTTTACCCTATAGGGTTATTTCAGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCC
*
48543077 TATGAGGGTATTTTAA
66 TATGAGGGTATTTCAA
* * *
48543093 TCA-TTTAACCTAT-GGGGCATTTTAGTC-TTTATACCCTAT-GAGGGTATTTCAGTCATTTTAC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTT-TACCCTATAG-GGGTATTTCAGTCATTTTAC
48543154 CCTATGAGGGTATTTCAA
64 CCTATGAGGGTATTTCAA
* * * *
48543172 TCATTTTACCCTATGGAGGTATTTTGTTCATTTTACCCTATAGGGGTATTTCGGTCATTTTATCC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCC
**
48543237 TATGAGGGTATTTCTG
66 TATGAGGGTATTTCAA
* * * * *
48543253 TCATTTTACCTTATGGGGGTATTTTGGTCATTTTACCTTATAGGGGTATTACGGTCATTTTATCC
1 TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCC
*
48543318 TATG-GGGTATTTCGA
66 TATGAGGGTATTTCAA
48543333 TCATTT
1 TCATTT
48543339 ATTGACCTCT
Statistics
Matches: 218, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.01
79 59 0.27
80 33 0.15
81 119 0.55
82 4 0.02
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCC
TATGAGGGTATTTCAA
Found at i:48544180 original size:51 final size:51
Alignment explanation
Indices: 48544117--48544219 Score: 179
Period size: 51 Copynumber: 2.0 Consensus size: 51
48544107 TGAGAGAAAG
48544117 GTTTCGACGATTTTAATATCACTTGCTACACCTTTACTCCTCGAGGAAATC
1 GTTTCGACGATTTTAATATCACTTGCTACACCTTTACTCCTCGAGGAAATC
* * *
48544168 GTTTCGATGATTTTAATATCACTTGCTACAGCTTTACTCCTTGAGGAAATC
1 GTTTCGACGATTTTAATATCACTTGCTACACCTTTACTCCTCGAGGAAATC
48544219 G
1 G
48544220 AACCGTCAGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (51 bp):
GTTTCGACGATTTTAATATCACTTGCTACACCTTTACTCCTCGAGGAAATC
Found at i:48548854 original size:6 final size:6
Alignment explanation
Indices: 48548843--48548905 Score: 65
Period size: 6 Copynumber: 10.2 Consensus size: 6
48548833 ACTTAAAAAC
* * *
48548843 AAGAAA AAGAAA AAGAAA AGAAAAA AGAGAAA AAAAAA GAAGAAG AAGAAA
1 AAGAAA AAGAAA AAGAAA A-AGAAA A-AGAAA AAGAAA -AAGAAA AAGAAA
48548894 AAGAAA AA-AAA A
1 AAGAAA AAGAAA A
48548906 GGAGAGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
5 4 0.08
6 30 0.61
7 15 0.31
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:48548860 original size:12 final size:12
Alignment explanation
Indices: 48548837--48548905 Score: 75
Period size: 12 Copynumber: 5.5 Consensus size: 12
48548827 TACTTCACTT
*
48548837 AAAAACAAGAAA
1 AAAAAAAAGAAA
*
48548849 AAGAAAAAGAAA
1 AAAAAAAAGAAA
48548861 AGAAAAAAGAGAAA
1 A-AAAAAA-AGAAA
*
48548875 AAAAAAGAAGAAG
1 AAAAAA-AAGAAA
*
48548888 AAGAAAAAGAAA
1 AAAAAAAAGAAA
48548900 AAAAAA
1 AAAAAA
48548906 GGAGAGGCCA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
12 21 0.45
13 19 0.40
14 7 0.15
ACGTcount: A:0.83, C:0.01, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:48548875 original size:19 final size:18
Alignment explanation
Indices: 48548846--48548905 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 18
48548836 TAAAAACAAG
48548846 AAAAAGAAAAAGAAAAGA
1 AAAAAGAAAAAGAAAAGA
*
48548864 AAAAAGAGAAAAAAAAAGA
1 AAAAAGA-AAAAGAAAAGA
48548883 AGAAGAAGAAAAAGAAAA-A
1 A-AA-AAGAAAAAGAAAAGA
48548902 AAAA
1 AAAA
48548906 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
17 1 0.03
18 9 0.24
19 13 0.35
20 10 0.27
21 4 0.11
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAAAGAAAAGA
Found at i:48548875 original size:25 final size:25
Alignment explanation
Indices: 48548838--48548906 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 25
48548828 ACTTCACTTA
48548838 AAAACAAGA-AAAAGAAAAAGAA-AAG
1 AAAA-AAGAGAAAA-AAAAAGAAGAAG
48548863 AAAAAAGAGAAAAAAAAAGAAGAAG
1 AAAAAAGAGAAAAAAAAAGAAGAAG
48548888 AAGAAAA-AGAAAAAAAAAG
1 AA-AAAAGAGAAAAAAAAAG
48548907 GAGAGGCCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
24 12 0.29
25 25 0.61
26 4 0.10
ACGTcount: A:0.81, C:0.01, G:0.17, T:0.00
Consensus pattern (25 bp):
AAAAAAGAGAAAAAAAAAGAAGAAG
Found at i:48548880 original size:39 final size:38
Alignment explanation
Indices: 48548837--48548910 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 38
48548827 TACTTCACTT
48548837 AAAAACAAGAAAAAGAAAAAGAAAAGAAAAAAGAGAAAA
1 AAAAACAAGAAAAAGAAAAAGAAAA-AAAAAAGAGAAAA
* * *
48548876 AAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGGAGA
1 AAAAACAAGAAAAAGAAAAAGAAAAAAAAAAGAGA
48548911 GGCCAAGGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 9 0.28
39 23 0.72
ACGTcount: A:0.80, C:0.01, G:0.19, T:0.00
Consensus pattern (38 bp):
AAAAACAAGAAAAAGAAAAAGAAAAAAAAAAGAGAAAA
Found at i:48550055 original size:143 final size:143
Alignment explanation
Indices: 48549780--48550291 Score: 636
Period size: 143 Copynumber: 3.6 Consensus size: 143
48549770 GATTGAACTC
* * * *
48549780 ATTATGGCGAATCTCATCACCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAGCCTTATCTCT
1 ATTATGGCGAATCTTATCATCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCC
* * * * * * * * * *
48549845 GTGAAGTTGCAGCGGAGTACACTGAAGACAGCGAATCGTATTTCCCTAGCATTGCAGCGAAACAG
66 CTGAAGTTGCAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAG
*
48549910 ATTAAAGCTAAAA
131 ATTAAAGCTACAA
* *
48549923 ATTATGGCGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCATC-AGCCTTATCTC
1 ATTATGGCGAATCTTATCATCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAGCCTTATCTC
* * * * *
48549987 CCTAAAGTTGCAGTGGAGCAGACTGGAGACAGCGAATCTTATTTCCCTGGCGTTATAGTGGAAGA
65 CCTGAAGTTGCAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACA
48550052 GATTAAAGCTACAA
130 GATTAAAGCTACAA
* * * *
48550066 ATTATGG-AAGATATTATCATCTTGAAGTTGCAGTGGAGCAGATTGAAGTCAGC-AGCCTTATCT
1 ATTATGGCGA-ATCTTATCATCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAGCCTTATCT
* * *
48550129 CCCTGAAGTTGCAGTGGAGCAAACTAAAGACAGCGAATCTTATTTCCCTGGAGTTACAGTGGAAT
64 CCCTGAAGTTGCAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAAC
48550194 AGATTAAAGCTACAA
129 AGATTAAAGCTACAA
** * * * *
48550209 ATTATGATGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACCAATCC-TATCTC
1 ATTATGGCGAATCTTATCATCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAGCCTTATCTC
*
48550273 CCTGAAGTTGAAGTGGAGC
65 CCTGAAGTTGCAGTGGAGC
48550292 GGATTAAAAC
Statistics
Matches: 321, Mismatches: 44, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
142 1 0.00
143 316 0.98
144 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (143 bp):
ATTATGGCGAATCTTATCATCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGCCTTATCTCC
CTGAAGTTGCAGTGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAG
ATTAAAGCTACAA
Found at i:48550142 original size:44 final size:45
Alignment explanation
Indices: 48550088--48550299 Score: 142
Period size: 44 Copynumber: 4.6 Consensus size: 45
48550078 ATTATCATCT
*
48550088 TGAAGTTGCAGTGGAGCAGATTGAAGTCAGC-AGCCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTAAAGTCAGCAAGCCTTATCTCCC
* * * * *
48550132 TGAAGTTGCAGTGGAGCAAACTAAAGACAGCGAA-TCTTATTTCCC
1 TGAAGTTGCAGTGGAGCAGATTAAAGTCAGC-AAGCCTTATCTCCC
* * ** ** * *
48550177 TGGAGTTACAGTGGAATAGATTAAAGCTACAAATTATGATGGATCTTATCTTCC
1 TGAAGTTGCAGTGGAGCAGATTAAAG-T-C--AGCA--A--G-CCTTATCTCCC
* * *
48550231 TGAAGTTGCAGTGGAGCAGATTGAAGTCACCAATCC-TATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTAAAGTCAGCAAGCCTTATCTCCC
* *
48550275 TGAAGTTGAAGTGGAGCGGATTAAA
1 TGAAGTTGCAGTGGAGCAGATTAAA
48550300 ACGACAATTC
Statistics
Matches: 126, Mismatches: 30, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
44 56 0.44
45 30 0.24
46 1 0.01
47 1 0.01
48 2 0.02
49 1 0.01
50 3 0.02
52 1 0.01
53 1 0.01
54 30 0.24
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAGCAGATTAAAGTCAGCAAGCCTTATCTCCC
Found at i:48550312 original size:44 final size:44
Alignment explanation
Indices: 48550223--48550323 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 44
48550213 TGATGGATCT
* * **
48550223 TATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACCAATCC
1 TATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAAACACCAATCC
*
48550267 TATCTCCCTGAAGTTGAAGTGGAGCGGATT-AAAACGA-CAATTCC
1 TATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAAAC-ACCAA-TCC
48550311 TATAC-CCCTGAAG
1 TAT-CTCCCTGAAG
48550324 ATGCAATGGG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
43 6 0.12
44 42 0.86
45 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGAAGTGGAGCAGATTGAAAACACCAATCC
Found at i:48551662 original size:12 final size:12
Alignment explanation
Indices: 48551639--48551670 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
48551629 ATTAAAATTA
48551639 ATTATT-TTACT
1 ATTATTATTACT
48551650 ATTATTATTACT
1 ATTATTATTACT
48551662 ATTATTATT
1 ATTATTATT
48551671 TTCCTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:48551681 original size:27 final size:27
Alignment explanation
Indices: 48551622--48551682 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
48551612 ATTTTTGCTA
48551622 TTTTATTATTAAAATTAATTATTTTAC
1 TTTTATTATTAAAATTAATTATTTTAC
* ** *
48551649 TATTATTATTACTATT-ATTATTTTCC
1 TTTTATTATTAAAATTAATTATTTTAC
48551675 TGTTTATT
1 T-TTTATT
48551683 TATTTATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.62
Consensus pattern (27 bp):
TTTTATTATTAAAATTAATTATTTTAC
Found at i:48554930 original size:45 final size:45
Alignment explanation
Indices: 48554828--48555081 Score: 152
Period size: 44 Copynumber: 5.5 Consensus size: 45
48554818 CTTATCTTCT
* * * ** * * *
48554828 TGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTAATCTACC
1 TGAAGTTGCAGTGGAACAGATTGAAGACAGCGAATCTTATTTCCC
* *
48554872 TAAAGTTGCAGTGGAACAGACTGAAGACAGCGAATCTTATTTCCC
1 TGAAGTTGCAGTGGAACAGATTGAAGACAGCGAATCTTATTTCCC
** * * * *
48554917 TGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATTACGGATCTTATTTTCC
1 TGAAGTTGCAGTGGAACAGATTGAAG--AC-----A--GCGAATCTTATTTCCC
* * * ** *
48554971 TGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTTATCTCCC
1 TGAAGTTGCAGTGGAACAGATTGAAGACAGCGAATCTTATTTCCC
* * * * *
48555015 TGAAGTTGCTGCGGAGCAGGTTGAAGATAGCGAATCTTATTTCCC
1 TGAAGTTGCAGTGGAACAGATTGAAGACAGCGAATCTTATTTCCC
**
48555060 TGGCGTTGCAGTGGAACAGATT
1 TGAAGTTGCAGTGGAACAGATT
48555082 AAAGCTACAA
Statistics
Matches: 155, Mismatches: 44, Indels: 21
0.70 0.20 0.10
Matches are distributed among these distances:
44 58 0.37
45 57 0.37
47 3 0.02
52 2 0.01
54 35 0.23
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAACAGATTGAAGACAGCGAATCTTATTTCCC
Found at i:48555174 original size:143 final size:143
Alignment explanation
Indices: 48554665--48555174 Score: 745
Period size: 143 Copynumber: 3.6 Consensus size: 143
48554655 TTGAAGTCAA
* * *
48554665 TATGGC-GAATCTTATCTTCCTGAAGTTGCAGTGCAGCAGATTAAAGCCACCAACCTTATCTCCC
1 TATGGCAG-ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * *
48554729 TAAAGTTGCAGCGAAGTAGACTGAAGACAACGAATCTTATTTCCCTGACGTTGCAGTGGAACAGA
65 TAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGA
48554794 TTAAAGCTACAAAT
130 TTAAAGCTACAAAT
* * *
48554808 TATGGCAGATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTAATCTACCT
1 TATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCT
* *
48554873 AAAGTTGCAGTGGAACAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGAT
66 AAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGAT
48554938 TAAAGCTACAAAT
131 TAAAGCTACAAAT
** * *
48554951 TATTACGGATCTTATTTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCT
1 TATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCT
* * ** *
48555016 GAAGTTGCTGCGGAGCAGGTTGAAGATAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGAT
66 AAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGAT
48555081 TAAAGCTACAAAT
131 TAAAGCTACAAAT
* * * *
48555094 TATGGCAGATCTTATCTTCTTGAAGTTGTAGTGGAGCAAATTGAAGCCACCAATCC-TATCTCCC
1 TATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCC
* *
48555158 TGAAGTTGCAGTGGAGC
65 TAAAGTTGCAGCGGAGC
48555175 GGATTAAAAC
Statistics
Matches: 329, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
143 325 0.99
144 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (143 bp):
TATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCT
AAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGAT
TAAAGCTACAAAT
Found at i:48556424 original size:12 final size:12
Alignment explanation
Indices: 48556401--48556432 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
48556391 ATTAAAATTA
48556401 ATTATT-TTACT
1 ATTATTATTACT
48556412 ATTATTATTACT
1 ATTATTATTACT
48556424 ATTATTATT
1 ATTATTATT
48556433 TTCCTGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:48557405 original size:18 final size:18
Alignment explanation
Indices: 48557384--48557427 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
48557374 TGGTTCTTAC
48557384 TATTTTTAAAATTAAAT-A
1 TATTTTTAAAA-TAAATCA
*
48557402 TA-TTTTAAAATAATTCA
1 TATTTTTAAAATAAATCA
48557419 TATTTTTAA
1 TATTTTTAA
48557428 TCAAACTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TATTTTTAAAATAAATCA
Found at i:48562246 original size:12 final size:12
Alignment explanation
Indices: 48562221--48562259 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
48562211 ACTCGCTTCT
* *
48562221 TTACTTACTCAC
1 TTACTTGCTTAC
*
48562233 TTACTTGTTTAC
1 TTACTTGCTTAC
48562245 TTACTTGCTTAC
1 TTACTTGCTTAC
48562257 TTA
1 TTA
48562260 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:48569907 original size:50 final size:50
Alignment explanation
Indices: 48569828--48569999 Score: 166
Period size: 50 Copynumber: 3.3 Consensus size: 50
48569818 TATCCTAGAT
* ** * *
48569828 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
** * *
48569878 ATGGTCTTA-AGGGGAACCTCTCATCTCGGTGCCAACACCATATCCCAGAT
1 ATGGTCTTACAGGGG-ACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
* *
48569928 ATGGTCTTACATGGGACCTCTCATAATCTCATTGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACAGGGGACCTCTC---ATCTC---GGTGCCAATGCCATGTCCCAGAC
*
48569984 ATGGTCTTACATGGGA
1 ATGGTCTTACAGGGGA
48570000 TCTCATTCCC
Statistics
Matches: 99, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
49 4 0.04
50 52 0.53
51 4 0.04
53 5 0.05
56 34 0.34
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (50 bp):
ATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
Found at i:48582316 original size:13 final size:13
Alignment explanation
Indices: 48582298--48582322 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48582288 TTAATTGATT
48582298 TTTAAGGTTAATG
1 TTTAAGGTTAATG
48582311 TTTAAGGTTAAT
1 TTTAAGGTTAAT
48582323 TTGGTAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TTTAAGGTTAATG
Found at i:48586352 original size:18 final size:18
Alignment explanation
Indices: 48586331--48586371 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
48586321 TTTTTGTATG
48586331 TAATAATATTTTAATAAA
1 TAATAATATTTTAATAAA
* *
48586349 TAATAATATTTTATTAAT
1 TAATAATATTTTAATAAA
48586367 TAATA
1 TAATA
48586372 TTATAATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATATTTTAATAAA
Found at i:48606348 original size:50 final size:50
Alignment explanation
Indices: 48606247--48606437 Score: 211
Period size: 50 Copynumber: 3.7 Consensus size: 50
48606237 TAAAGAGATG
*
48606247 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCCTTGAGAATATGAGAAGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAAGTC
* * *
48606303 CCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTC
** * * * *
48606353 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAAAATTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTC
* * *
48606403 CCATGTAAGATCATATCTGGGATATGGCATTGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA
48606438 TTACAAGAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
50 79 0.68
53 3 0.03
55 2 0.02
56 32 0.28
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAGTC
Found at i:48606430 original size:100 final size:103
Alignment explanation
Indices: 48606251--48606437 Score: 245
Period size: 100 Copynumber: 1.8 Consensus size: 103
48606241 GAGATGCCAT
* *
48606251 GTAAGACCATGTCTGGGACATGACATTGGCATCCTTGAGAATATGAGAAGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGACATGGGCATCC-T--GAATATGAAAAGTCCCATGTAAGACCA
* * *
48606316 TGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
63 TATCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
* * *
48606357 GTAAGACCATGTCTGGGACATGGCATGGGCA-CC-G-ATATGAAAATTCCCATGTAAGATCATAT
1 GTAAGACCATGTCTGGGACATGACATGGGCATCCTGAATATGAAAAGTCCCATGTAAGACCATAT
*
48606419 CTGGGATATGGCATTGGCA
66 CTGGGACATGGCATTGGCA
48606438 TTACAAGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 40 0.56
101 1 0.01
105 2 0.03
106 29 0.40
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (103 bp):
GTAAGACCATGTCTGGGACATGACATGGGCATCCTGAATATGAAAAGTCCCATGTAAGACCATAT
CTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
Found at i:48613457 original size:50 final size:50
Alignment explanation
Indices: 48613388--48613559 Score: 152
Period size: 50 Copynumber: 3.5 Consensus size: 50
48613378 AGGTCCCATA
* * * * * ** *
48613388 TAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCG
1 TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCACG
* *
48613438 TAAGACCATATCTGGGACATGGCATGGGCACCGATATAAGAACTCCCATG
1 TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCACG
* * * * * *
48613488 TAAGACCATATCTGGGATATGGTATTGGCA--GTACATGA-AACATCCCATG
1 TAAGACCATATCTGGGACATGGCATGGGCACCG-AGATAAGAAC-TCCCACG
*
48613537 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATATCTGGGACATGGC
48613560 TTTAGCATGT
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 31 0.30
50 67 0.66
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (50 bp):
TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCCACG
Found at i:48615790 original size:54 final size:54
Alignment explanation
Indices: 48615708--48615814 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
48615698 AAGGATAAAG
48615708 TAAACTGAAAATGTTAAAATATATGCTAAGGATAACTCAATGGGAACAATTTAC
1 TAAACTGAAAATGTTAAAATATATGCTAAGGATAACTCAATGGGAACAATTTAC
*
48615762 TAAACTGAAAATGTTATAATATATGCTAAGGATAACTCAATGGGAACAATTTA
1 TAAACTGAAAATGTTAAAATATATGCTAAGGATAACTCAATGGGAACAATTTA
48615815 ACCAATAAGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (54 bp):
TAAACTGAAAATGTTAAAATATATGCTAAGGATAACTCAATGGGAACAATTTAC
Found at i:48624405 original size:22 final size:22
Alignment explanation
Indices: 48624362--48624405 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
48624352 TTCTACTATC
* * *
48624362 AAACATAACTCAACTTTTACCA
1 AAACATAACTCAAATATGACCA
*
48624384 AAACATACCTCAAATATGACCA
1 AAACATAACTCAAATATGACCA
48624406 TTAACTCTTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (22 bp):
AAACATAACTCAAATATGACCA
Found at i:48639278 original size:41 final size:41
Alignment explanation
Indices: 48639231--48639329 Score: 99
Period size: 41 Copynumber: 2.4 Consensus size: 41
48639221 AGGAGCACTG
* *
48639231 AAGTATAAACAGGGGCACGCATGTGCAGTTTAGGGGTACCA
1 AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
* * * * ** * *
48639272 ACGTATAGATAGGGGAACTTATGTGTAATTCAGGGGTATCA
1 AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
*
48639313 AAGTACAAACAGGGGCA
1 AAGTATAAACAGGGGCA
48639330 TATATGTGTA
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.21
Consensus pattern (41 bp):
AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
Found at i:48645984 original size:20 final size:20
Alignment explanation
Indices: 48645959--48646005 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
48645949 AAGCTTATGC
*
48645959 TAAGTAAATGAAATGGAAAT
1 TAAGTAAATGAAATGGAAAG
*
48645979 TAAGTAAATGAATTGGAAAG
1 TAAGTAAATGAAATGGAAAG
48645999 TAAGTAA
1 TAAGTAA
48646006 GAATGGTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:48651956 original size:41 final size:41
Alignment explanation
Indices: 48651909--48652007 Score: 99
Period size: 41 Copynumber: 2.4 Consensus size: 41
48651899 AGGAGCACTG
* *
48651909 AAGTATAAACAGGGGCACGCATGTGCAGTTTAGGGGTACCA
1 AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
* * * * ** * *
48651950 ACGTATAGATAGGGGAACTTATGTGTAATTCAGGGGTATCA
1 AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
*
48651991 AAGTACAAACAGGGGCA
1 AAGTATAAACAGGGGCA
48652008 TATATGTGTA
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.21
Consensus pattern (41 bp):
AAGTATAAACAGGGGCACGCATGTGCAATTCAGGGGTACCA
Found at i:48658662 original size:20 final size:20
Alignment explanation
Indices: 48658637--48658683 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
48658627 AAGCTTATGC
*
48658637 TAAGTAAATGAAATGGAAAT
1 TAAGTAAATGAAATGGAAAG
*
48658657 TAAGTAAATGAATTGGAAAG
1 TAAGTAAATGAAATGGAAAG
48658677 TAAGTAA
1 TAAGTAA
48658684 GAATGGTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:48660399 original size:23 final size:23
Alignment explanation
Indices: 48660369--48660425 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
48660359 TATAATTCAT
48660369 CATAAAGGAAACACAGAATACGC
1 CATAAAGGAAACACAGAATACGC
***
48660392 CATAAAGGCATTTACAGAATACGC
1 CATAAAGG-AAACACAGAATACGC
48660416 CATAAAGGAA
1 CATAAAGGAA
48660426 TTTATAGAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 9 0.31
24 20 0.69
ACGTcount: A:0.49, C:0.19, G:0.18, T:0.14
Consensus pattern (23 bp):
CATAAAGGAAACACAGAATACGC
Found at i:48660412 original size:24 final size:24
Alignment explanation
Indices: 48660381--48660436 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
48660371 TAAAGGAAAC
*
48660381 ACAGAATACGCCATAAAGGCATTT
1 ACAGAATACGCCATAAAGGAATTT
48660405 ACAGAATACGCCATAAAGGAATTT
1 ACAGAATACGCCATAAAGGAATTT
*
48660429 ATAGAATA
1 ACAGAATA
48660437 TGCACAAGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.21
Consensus pattern (24 bp):
ACAGAATACGCCATAAAGGAATTT
Found at i:48661737 original size:22 final size:23
Alignment explanation
Indices: 48661710--48661754 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
48661700 CAAAAGAAAC
48661710 TGAAATAG-CATT-AAGAAAAGAT
1 TGAAAT-GTCATTAAAGAAAAGAT
48661732 TGAAATGTCATTACAAGAAAAGA
1 TGAAATGTCATTA-AAGAAAAGA
48661755 AAATGACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.05
22 10 0.50
24 9 0.45
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (23 bp):
TGAAATGTCATTAAAGAAAAGAT
Found at i:48664264 original size:21 final size:22
Alignment explanation
Indices: 48664240--48664281 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
48664230 AAGAATGTAC
*
48664240 ATAAAA-CGATCCTAAAAATTT
1 ATAAAAGCAATCCTAAAAATTT
48664261 ATAAAAGCAATCCTAAAAATT
1 ATAAAAGCAATCCTAAAAATT
48664282 CTAAAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (22 bp):
ATAAAAGCAATCCTAAAAATTT
Found at i:48664298 original size:21 final size:23
Alignment explanation
Indices: 48664274--48664317 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
48664264 AAAGCAATCC
*
48664274 TAAAAAT-TCTAAA-ATGTATTA
1 TAAAAATATATAAACATGTATTA
48664295 TAAAAATATATAAACATGTATTA
1 TAAAAATATATAAACATGTATTA
48664318 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (23 bp):
TAAAAATATATAAACATGTATTA
Found at i:48665474 original size:21 final size:21
Alignment explanation
Indices: 48665450--48665489 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
48665440 ATTCCAAAGA
* *
48665450 TAACTCATTAGAAGTATATTG
1 TAACTCACTAAAAGTATATTG
48665471 TAACTCACTAAAAGTATAT
1 TAACTCACTAAAAGTATAT
48665490 GAATTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (21 bp):
TAACTCACTAAAAGTATATTG
Found at i:48670558 original size:31 final size:30
Alignment explanation
Indices: 48670523--48670583 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
48670513 TCCACAGAAG
*
48670523 TAGTCCATTGGGACAGTAAACACAAGATAGA
1 TAGTCCACTGGGACAGTAAACA-AAGATAGA
** *
48670554 TAGTCTGCTGGGCCAGTAAACAAAGATAGA
1 TAGTCCACTGGGACAGTAAACAAAGATAGA
48670584 GTCCGCCAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (30 bp):
TAGTCCACTGGGACAGTAAACAAAGATAGA
Found at i:48675998 original size:18 final size:18
Alignment explanation
Indices: 48675975--48676012 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
48675965 TATGCTAGCA
48675975 AAACTCTTACAGAAGCTC
1 AAACTCTTACAGAAGCTC
*
48675993 AAACTCTTATAGAAGCTC
1 AAACTCTTACAGAAGCTC
48676011 AA
1 AA
48676013 CTCAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (18 bp):
AAACTCTTACAGAAGCTC
Found at i:48678577 original size:18 final size:18
Alignment explanation
Indices: 48678551--48678595 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
48678541 GCTACTGTAG
* *
48678551 AAGATGAAGTTGTTGCTA
1 AAGAAGAAGTGGTTGCTA
*
48678569 AAGAGGAAGTGGTTGCTA
1 AAGAAGAAGTGGTTGCTA
48678587 AAGAAGAAG
1 AAGAAGAAG
48678596 AAGTTGTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.33, T:0.22
Consensus pattern (18 bp):
AAGAAGAAGTGGTTGCTA
Found at i:48678593 original size:21 final size:19
Alignment explanation
Indices: 48678548--48678604 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 19
48678538 GTTGCTACTG
*
48678548 TAGAAGATGAAGTTGTTGC
1 TAGAAGAAGAAGTTGTTGC
* *
48678567 TA-AAGAGGAAGTGGTTGC
1 TAGAAGAAGAAGTTGTTGC
48678585 TAAAGAAGAAGAAGTTGTTG
1 T--AGAAGAAGAAGTTGTTG
48678605 AAAATGAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 15 0.48
19 2 0.06
20 1 0.03
21 13 0.42
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.26
Consensus pattern (19 bp):
TAGAAGAAGAAGTTGTTGC
Found at i:48686191 original size:50 final size:50
Alignment explanation
Indices: 48686133--48686414 Score: 338
Period size: 50 Copynumber: 5.6 Consensus size: 50
48686123 TGAGATCCCA
* *
48686133 TGTAAGACCAGGTCTGGGACATGGCGTGGGCACTAAGATGAGAGGTCCAG
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAG
48686183 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAG
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAG
*
48686233 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-TCGAGATGAGAGGTCCCA-
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACT-AAGATGAGAGGT-CCAG
* * * **
48686283 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCAAGATAAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAG
* * * * **
48686333 CGTAAGACCATGTCTGGGACATGGCATGGGCACCT-ATATGAGAACTCCCA-
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-CTAAGATGAGAGGT-CCAG
* * * *
48686383 TGTAAGACCATATATGGGATATGGCATTGGCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA
48686415 GTATAAAAAA
Statistics
Matches: 203, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
49 3 0.01
50 194 0.96
51 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAG
Found at i:48686401 original size:150 final size:148
Alignment explanation
Indices: 48686121--48686414 Score: 385
Period size: 150 Copynumber: 2.0 Consensus size: 148
48686111 ACATTAAGAG
* * **
48686121 GATGAGATCCCATGTAAGACCAGGTCTGGGACATGGCGTGGGCACTAAGATGAGAGGTCCAGTGT
1 GATGAGATCCCATGTAAGACCAGGTCTGGGACATGGCGTGGGCACCAAGATAAGAGGTCCACCGT
* * ** * *
48686186 AAGACCATGTCTGGGACATGGCGTTGGCACTAAGATGAGAGGTCCAGTGTAAGACCATGTCTGGG
66 AAGACCATGTCTGGGACATGGCATGGGCACTAAGATGAGAACTCCAGTGTAAGACCATATATGGG
*
48686251 ACATGGCGTTGGCATCGA
131 ACATGGCATTGGCATCGA
* * * *
48686269 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCAAGATAAGAGGTCCCCC
1 GATGAGA--TCCCATGTAAGACCAGGTCTGGGACATGGCGTGGGCACCAAGATAAGAGGTCCACC
*
48686334 GTAAGACCATGTCTGGGACATGGCATGGGCACCT-ATATGAGAACTCCCA-TGTAAGACCATATA
64 GTAAGACCATGTCTGGGACATGGCATGGGCA-CTAAGATGAGAACT-CCAGTGTAAGACCATATA
*
48686397 TGGGATATGGCATTGGCA
127 TGGGACATGGCATTGGCA
48686415 GTATAAAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
148 7 0.06
150 113 0.90
151 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (148 bp):
GATGAGATCCCATGTAAGACCAGGTCTGGGACATGGCGTGGGCACCAAGATAAGAGGTCCACCGT
AAGACCATGTCTGGGACATGGCATGGGCACTAAGATGAGAACTCCAGTGTAAGACCATATATGGG
ACATGGCATTGGCATCGA
Found at i:48689111 original size:19 final size:20
Alignment explanation
Indices: 48689069--48689111 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
48689059 TCATGCTTTC
*
48689069 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
48689089 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
48689107 TATTC
1 TATTC
48689112 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:48689353 original size:51 final size:50
Alignment explanation
Indices: 48689240--48689429 Score: 186
Period size: 51 Copynumber: 3.8 Consensus size: 50
48689230 GTATCCGGTT
* * ** *
48689240 CACATAGTAGCCTGCACATAGTACTGCACATGTGACCATTTCCA-TCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA--AGCATTCCGATA
* * * *
48689291 CACGTAATAGCCTGCACATAGTACTACACACGTGATCGAAGCTATT-CGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAAGC-ATTCCGATA
* * * * *
48689342 CGCATAGTAGCCTGCACATAGTACTACACATGCGACCCATCATTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAAGCATTCCGATA
* *
48689392 CACGTAGTAGCCTGCACATAGTACTACATACGTGACCA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA
48689430 TCACTTTCAC
Statistics
Matches: 111, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.03
50 40 0.36
51 65 0.59
52 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCAAGCATTCCGATA
Found at i:48689418 original size:101 final size:101
Alignment explanation
Indices: 48689242--48689426 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
48689232 ATCCGGTTCA
* * *
48689242 CATAGTAGCCTGCACATAGTACTGCACATGTGACCATTTCCATCTGATACACGTAATAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TTCCATCCGATACACGTAATAGCCTGCA
48689307 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
*
48689344 CATAGTAGCCTGCACATAGTACTACACATGCGACCCA-T-CATTCCGATACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGA-CCATTCCA-TCCGATACACGTAATAGCCTGC
*
48689407 ACATAGTACTACATACGTGA
64 ACATAGTACTACACACGTGA
48689427 CCATCACTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 2 0.03
101 40 0.53
102 31 0.41
103 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTCCATCCGATACACGTAATAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATTCGGTACG
Found at i:48693499 original size:24 final size:25
Alignment explanation
Indices: 48693454--48693506 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
48693444 TTTTCTCAAA
* *
48693454 AATTTAATTAATATAAATATTA-AT
1 AATTTAATAAATATAAAAATTAGAT
48693478 AATTTAATAAAT-TGAAAAATTAGAT
1 AATTTAATAAATAT-AAAAATTAGAT
48693503 AATT
1 AATT
48693507 AAATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 18 0.72
25 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
AATTTAATAAATATAAAAATTAGAT
Found at i:48702286 original size:17 final size:17
Alignment explanation
Indices: 48702264--48702297 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
48702254 GATAAGTATA
*
48702264 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
48702281 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
48702298 CATGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:48703222 original size:21 final size:22
Alignment explanation
Indices: 48703198--48703238 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
48703188 TATATTTTAG
*
48703198 CATTTT-CAATTTAGTGAATTT
1 CATTTTACAACTTAGTGAATTT
*
48703219 CATTTTATAACTTAGTGAAT
1 CATTTTACAACTTAGTGAAT
48703239 CCTAGCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (22 bp):
CATTTTACAACTTAGTGAATTT
Found at i:48713952 original size:41 final size:41
Alignment explanation
Indices: 48713846--48714253 Score: 389
Period size: 41 Copynumber: 9.7 Consensus size: 41
48713836 TAACTGCTAC
** *
48713846 ACGGTGGAATCAGCACTTAGCAACCACCTTATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACC-CCTTATAATC-AATGAT
*
48713889 CCTGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 AC-GGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * *
48713932 ACGG-GGAATTAGCACATAGCAACCCCTTTCACAATCAA-GTAT
1 ACGGTGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATG-AT
48713974 ACGGTGGAATCAGCA-TTGAGCAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTT-AGCAACC-CCTTATAATCAATGAT
* * * * * *
48714016 ATGG-GAAATCAACACATAGCAACCCCTTTCACAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGAT
* *
48714058 ACGGTTGAATCAACACTTAGCAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * * *
48714100 ACGG-GAAATCAGCACATAGCAACCCCTTTCACAATCAACGAT
1 ACGGTGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGAT
* *
48714142 ATGGTGGAATCAGCACTTAGCAACCATCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGAT
* * *
48714184 ACAG-GGAATCAGCACATAGCAACCCCTTATTGATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCCCTTA-TAATCAATGAT
* *
48714225 TCGG-GGAATCTGCACTTAGCAACCCCTTA
1 ACGGTGGAATCAGCACTTAGCAACCCCTTA
48714254 CATTCAAAAA
Statistics
Matches: 303, Mismatches: 44, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
40 10 0.03
41 110 0.36
42 81 0.27
43 65 0.21
44 37 0.12
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
ACGGTGGAATCAGCACTTAGCAACCCCTTATAATCAATGAT
Found at i:48713996 original size:84 final size:83
Alignment explanation
Indices: 48713892--48714253 Score: 511
Period size: 84 Copynumber: 4.3 Consensus size: 83
48713882 AAAGGATCCT
* *
48713892 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATTAGCACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
48713957 CTTTCACAATCAAGTATAC
66 CTTTCACAATCAAG-ATAC
* *
48713976 GGTGGAATCAGCA-TTGAGCAACCACCTTATAATCAATGATATGGGAAATCAACACATAGCAACC
1 GGTGGAATCAGCACTT-AGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACC
48714040 CCTTTCACAATCAAGGATAC
65 CCTTTCACAATCAA-GATAC
* *
48714060 GGTTGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
*
48714125 CTTTCACAATCAACGATAT
66 CTTTCACAATCAA-GATAC
*
48714144 GGTGGAATCAGCACTTAGCAACCATCTTATAATCAATGATACAGGG-AATCAGCACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC-GGGAAATCAGCACATAGCAACC
** *
48714208 CC-TT-ATTGATCAATGATTC
65 CCTTTCA-CAATCAA-GATAC
*
48714227 GG-GGAATCTGCACTTAGCAACC-CCTTA
1 GGTGGAATCAGCACTTAGCAACCACCTTA
48714254 CATTCAAAAA
Statistics
Matches: 253, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
81 4 0.02
82 20 0.08
83 14 0.06
84 209 0.83
85 6 0.02
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (83 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCC
CTTTCACAATCAAGATAC
Found at i:48714545 original size:54 final size:54
Alignment explanation
Indices: 48714463--48714568 Score: 212
Period size: 54 Copynumber: 2.0 Consensus size: 54
48714453 TCAATTCCTC
48714463 ATCTTTCTTGGTTTATAATAACACATTTAACTTATTTAACACTCACATTATTAA
1 ATCTTTCTTGGTTTATAATAACACATTTAACTTATTTAACACTCACATTATTAA
48714517 ATCTTTCTTGGTTTATAATAACACATTTAACTTATTTAACACTCACATTATT
1 ATCTTTCTTGGTTTATAATAACACATTTAACTTATTTAACACTCACATTATT
48714569 CAACCTAGTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.34, C:0.17, G:0.04, T:0.45
Consensus pattern (54 bp):
ATCTTTCTTGGTTTATAATAACACATTTAACTTATTTAACACTCACATTATTAA
Found at i:48724866 original size:14 final size:14
Alignment explanation
Indices: 48724824--48724867 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
48724814 CTGAGTGTTT
*
48724824 TTATTATTATTTAC
1 TTATTTTTATTTAC
*
48724838 TTATCTTTTA-ATAC
1 TTAT-TTTTATTTAC
48724852 TTATTTTTATTTAC
1 TTATTTTTATTTAC
48724866 TT
1 TT
48724868 TGATTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
13 5 0.20
14 16 0.64
15 4 0.16
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTTTTATTTAC
Found at i:48725790 original size:21 final size:21
Alignment explanation
Indices: 48725766--48725811 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
48725756 TTATACTTCG
48725766 TTGTT-TTATTATTTATTATTC
1 TTGTTATT-TTATTTATTATTC
*
48725787 TTGTTATTTTATTTTTTATTC
1 TTGTTATTTTATTTATTATTC
48725808 TTGT
1 TTGT
48725812 GCTTAGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (21 bp):
TTGTTATTTTATTTATTATTC
Found at i:48725804 original size:24 final size:25
Alignment explanation
Indices: 48725740--48725806 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
48725730 TTTTATTTTA
*
48725740 TTATCTTTACTATTTATTATACTTCG
1 TTAT-TTTATTATTTATTATACTTCG
* *
48725766 TTGTTTTATTATTTATTATTCTT-G
1 TTATTTTATTATTTATTATACTTCG
*
48725790 TTATTTTATTTTTTATT
1 TTATTTTATTATTTATT
48725807 CTTGTGCTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 16 0.44
25 17 0.47
26 3 0.08
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.69
Consensus pattern (25 bp):
TTATTTTATTATTTATTATACTTCG
Found at i:48727333 original size:13 final size:13
Alignment explanation
Indices: 48727306--48727339 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
48727296 AAATTGAGTT
48727306 TTAATT-AATTAA
1 TTAATTAAATTAA
*
48727318 TTAATTAAATTGA
1 TTAATTAAATTAA
48727331 TTAATTAAA
1 TTAATTAAA
48727340 GTGGTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TTAATTAAATTAA
Found at i:48732103 original size:12 final size:13
Alignment explanation
Indices: 48732086--48732114 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
48732076 CTCATACATG
48732086 AATAAATAAA-GC
1 AATAAATAAATGC
48732098 AATAAATAAATGC
1 AATAAATAAATGC
48732111 AATA
1 AATA
48732115 GTTATAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:48743511 original size:19 final size:19
Alignment explanation
Indices: 48743489--48743526 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
48743479 TCAATCATCC
48743489 CTCATCTCATCA-TCTCTCA
1 CTCAT-TCATCATTCTCTCA
48743508 CTCATTCATCATTCTCTCA
1 CTCATTCATCATTCTCTCA
48743527 ACTTTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATTCATCATTCTCTCA
Found at i:48746528 original size:40 final size:40
Alignment explanation
Indices: 48746433--48746676 Score: 278
Period size: 40 Copynumber: 6.1 Consensus size: 40
48746423 ATACTATTTG
* *
48746433 ATTC-AGGGTTACCAAAGTACAAACA-GGGCATGTATGAGC
1 ATTCAAGGG-TACCGAAGTACAAACAGGGGCATGTATGTGC
*
48746472 GTTC-AGGTGTACCGAAGTACAAACAGGGGCATGTATGTGC
1 ATTCAAGG-GTACCGAAGTACAAACAGGGGCATGTATGTGC
* * * * *
48746512 ATTTAGGGGTATCGAAGTACAAACAGGGGCACGTAGGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCATGTATGTGC
* ** *
48746552 ATTTAAGGGTATAGAAGTACAAAAAGGGGCATGTATGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCATGTATGTGC
* * *
48746592 ATTCAAGGGTACCAAAGTACAAATAGGGGCAGGTATGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCATGTATGTGC
* * **
48746632 ATTCAAGGGTACCAAAGTACAAACAAGGGCACATATGTGC
1 ATTCAAGGGTACCGAAGTACAAACAGGGGCATGTATGTGC
48746672 ATTCA
1 ATTCA
48746677 TACAAAAGTT
Statistics
Matches: 178, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
39 21 0.12
40 155 0.87
41 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (40 bp):
ATTCAAGGGTACCGAAGTACAAACAGGGGCATGTATGTGC
Found at i:48746650 original size:120 final size:119
Alignment explanation
Indices: 48746447--48746674 Score: 314
Period size: 120 Copynumber: 1.9 Consensus size: 119
48746437 AGGGTTACCA
* * * *
48746447 AAGTACAAACAGGGCATGTATGAGCGTTCAGGTGTACCGAAGTACAAACAGGGGCATGTATGTGC
1 AAGTACAAAAAGGGCATGTATGAGCATTCAGGTGTACCAAAGTACAAACAGGGGCAGGTATGTGC
* * * * * *
48746512 ATTTAGGGGTATCGAAGTACAAACAGGGGCACGTAGGTGCATTTAAGGGTATAG
66 ATTCAAGGGTACCAAAGTACAAACAAGGGCACATAGGTGCATTTAAGGGTATAG
* *
48746566 AAGTACAAAAAGGGGCATGTATGTGCATTCAAGG-GTACCAAAGTACAAATAGGGGCAGGTATGT
1 AAGTACAAAAA-GGGCATGTATGAGCATTC-AGGTGTACCAAAGTACAAACAGGGGCAGGTATGT
*
48746630 GCATTCAAGGGTACCAAAGTACAAACAAGGGCACATATGTGCATT
64 GCATTCAAGGGTACCAAAGTACAAACAAGGGCACATAGGTGCATT
48746675 CATACAAAAG
Statistics
Matches: 94, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 10 0.11
120 81 0.86
121 3 0.03
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (119 bp):
AAGTACAAAAAGGGCATGTATGAGCATTCAGGTGTACCAAAGTACAAACAGGGGCAGGTATGTGC
ATTCAAGGGTACCAAAGTACAAACAAGGGCACATAGGTGCATTTAAGGGTATAG
Found at i:48751175 original size:25 final size:25
Alignment explanation
Indices: 48751141--48751197 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
48751131 TCATTAGGGT
* *
48751141 TACCAATTTATAGCTCGTGAGAGCA
1 TACCGATTTATAACTCGTGAGAGCA
48751166 TACCGATTTATAACTCGTGAGAGCA
1 TACCGATTTATAACTCGTGAGAGCA
48751191 TACCGAT
1 TACCGAT
48751198 CTTCAGATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (25 bp):
TACCGATTTATAACTCGTGAGAGCA
Found at i:48756584 original size:30 final size:29
Alignment explanation
Indices: 48756510--48756585 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
48756500 GTGTGCTAAA
* *
48756510 CGATGGTTGTAACCATCCCTTTTAATATT
1 CGATGGTTGTAACCATCCATTTTAATAAT
* *
48756539 CGATGGTTGAAACCATCCATTTTCATTAAT
1 CGATGGTTGTAACCATCCATTTT-AATAAT
* *
48756569 CGATGGTCGTCACCATC
1 CGATGGTTGTAACCATC
48756586 TCTTTTTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (29 bp):
CGATGGTTGTAACCATCCATTTTAATAAT
Found at i:48756613 original size:59 final size:58
Alignment explanation
Indices: 48756510--48756627 Score: 134
Period size: 59 Copynumber: 2.0 Consensus size: 58
48756500 GTGTGCTAAA
*
48756510 CGATGGTTGTAACCATCCCTTTTAATATTCGATGGTTGAAACCATC-CATTTTCATTAAT
1 CGATGGTCGTAACCATCCCTTTTAATATTCGATGGTTGAAACCATCTC-TTTTCA-TAAT
* * * *
48756569 CGATGGTCGTCACCATCTCTTTTTATAGTT-GATGGTT-ATCACCATCTCTTTTCATAAT
1 CGATGGTCGTAACCATCCCTTTTAATA-TTCGATGGTTGA-AACCATCTCTTTTCATAAT
48756627 C
1 C
48756628 AATAGCCAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
58 6 0.12
59 42 0.82
60 3 0.06
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.41
Consensus pattern (58 bp):
CGATGGTCGTAACCATCCCTTTTAATATTCGATGGTTGAAACCATCTCTTTTCATAAT
Found at i:48756644 original size:29 final size:29
Alignment explanation
Indices: 48756616--48756739 Score: 142
Period size: 29 Copynumber: 4.3 Consensus size: 29
48756606 ATCACCATCT
* * *
48756616 CTTTTCATAATCAATAGCCAAAGCTATCT
1 CTTTTCATATTCAATAGCCGAAGCTATCC
* *
48756645 CTTTTCACATTTGAA-AGCCGAAGCTATCC
1 CTTTTCATA-TTCAATAGCCGAAGCTATCC
* * *
48756674 TTTTTCATATTCAATAGCTGAAGTTATCC
1 CTTTTCATATTCAATAGCCGAAGCTATCC
**
48756703 CTTTTCATATTCGGTAGCCGAAGCTATCC
1 CTTTTCATATTCAATAGCCGAAGCTATCC
48756732 CTTTTCAT
1 CTTTTCAT
48756740 TATATGAGGT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
28 4 0.05
29 71 0.91
30 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (29 bp):
CTTTTCATATTCAATAGCCGAAGCTATCC
Found at i:48756679 original size:58 final size:58
Alignment explanation
Indices: 48756616--48756739 Score: 158
Period size: 58 Copynumber: 2.1 Consensus size: 58
48756606 ATCACCATCT
* *
48756616 CTTTTCATAATCAATAGCCAAAGCTATCTCTTTTCACATTTGAAAGCCGAAGCTATCC
1 CTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCACATTCGAAAGCCGAAGCTATCC
* * ** * * **
48756674 TTTTTCATATTCAATAGCTGAAGTTATCCCTTTTCATATTCGGTAGCCGAAGCTATCC
1 CTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCACATTCGAAAGCCGAAGCTATCC
48756732 CTTTTCAT
1 CTTTTCAT
48756740 TATATGAGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (58 bp):
CTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCACATTCGAAAGCCGAAGCTATCC
Found at i:48759304 original size:15 final size:15
Alignment explanation
Indices: 48759284--48759314 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48759274 TTCTCTGCTA
*
48759284 CAGGCTTTTTCTCGG
1 CAGGCTTCTTCTCGG
48759299 CAGGCTTCTTCTCGG
1 CAGGCTTCTTCTCGG
48759314 C
1 C
48759315 CTTTGGTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.32, G:0.26, T:0.35
Consensus pattern (15 bp):
CAGGCTTCTTCTCGG
Found at i:48766563 original size:22 final size:23
Alignment explanation
Indices: 48766519--48766563 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
48766509 TTCTAGTATG
48766519 TTTTAGGGTTGAAATAAGGGTTA
1 TTTTAGGGTTGAAATAAGGGTTA
*
48766542 TTTTAGTGTT-AAA-AATGGGTTA
1 TTTTAGGGTTGAAATAA-GGGTTA
48766564 AAATAAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.42
Consensus pattern (23 bp):
TTTTAGGGTTGAAATAAGGGTTA
Found at i:48776600 original size:25 final size:24
Alignment explanation
Indices: 48776562--48776635 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
48776552 TTCGGGTTAT
* *
48776562 CGATTTCAGGTCGTGAGAGCTTAC
1 CGATTTCAGCTCGTAAGAGCTTAC
*
48776586 CGATTCTCAGCTCGTTTA-AGCTTAC
1 CGATT-TCAGCTCG-TAAGAGCTTAC
* *
48776611 CGATTACAGCTCGTAAGAGCATAC
1 CGATTTCAGCTCGTAAGAGCTTAC
48776635 C
1 C
48776636 AATTCAGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
23 2 0.05
24 19 0.45
25 19 0.45
26 2 0.05
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (24 bp):
CGATTTCAGCTCGTAAGAGCTTAC
Found at i:48776635 original size:24 final size:25
Alignment explanation
Indices: 48776572--48776659 Score: 72
Period size: 25 Copynumber: 3.6 Consensus size: 25
48776562 CGATTTCAGG
* * *
48776572 TCGTGAGAGCTTACCGATTCTCAGC
1 TCGTAAGAGCATACCGATTCACAGC
* *
48776597 TCGTTTA-AGCTTACCGATT-ACAGC
1 TCG-TAAGAGCATACCGATTCACAGC
* *
48776621 TCGTAAGAGCATACCAATTCAGAGC
1 TCGTAAGAGCATACCGATTCACAGC
* *
48776646 TTGTATGAGCATAC
1 TCGTAAGAGCATAC
48776660 ATGTACAGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.04
24 17 0.33
25 31 0.60
26 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
TCGTAAGAGCATACCGATTCACAGC
Found at i:48779708 original size:11 final size:12
Alignment explanation
Indices: 48779683--48779716 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
48779673 TCAGAGAGTT
48779683 ACACGGGCATGG
1 ACACGGGCATGG
48779695 ACACGGGC-TGG
1 ACACGGGCATGG
*
48779706 ACACGGCCATG
1 ACACGGGCATG
48779717 TGTCACTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.24, C:0.29, G:0.38, T:0.09
Consensus pattern (12 bp):
ACACGGGCATGG
Found at i:48780948 original size:16 final size:15
Alignment explanation
Indices: 48780911--48780951 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
48780901 TAATATTTCA
48780911 CACATTTATCATCTT
1 CACATTTATCATCTT
48780926 C-CATTTATACTAT-TT
1 CACATTTAT-C-ATCTT
48780941 CACATTTATCA
1 CACATTTATCA
48780952 CATTAACTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
14 8 0.35
15 6 0.26
16 9 0.39
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (15 bp):
CACATTTATCATCTT
Found at i:48799894 original size:27 final size:28
Alignment explanation
Indices: 48799861--48799916 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
48799851 TTCATTTTTC
48799861 ATTTTTCA-TTTTTAAATAAATGATTTA
1 ATTTTTCATTTTTTAAATAAATGATTTA
*
48799888 ATTTTTCATTTTTTTGAATAAATGATTTA
1 ATTTTTCA-TTTTTTAAATAAATGATTTA
48799917 GGGTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 8 0.31
29 18 0.69
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (28 bp):
ATTTTTCATTTTTTAAATAAATGATTTA
Found at i:48800307 original size:15 final size:15
Alignment explanation
Indices: 48800287--48800319 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
48800277 AACTTTAATA
48800287 TATAA-TTATATTATT
1 TATAATTTATA-TATT
48800302 TATAATTTATATATT
1 TATAATTTATATATT
48800317 TAT
1 TAT
48800320 TTTTATCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATAATTTATATATT
Found at i:48802476 original size:14 final size:14
Alignment explanation
Indices: 48802453--48802482 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48802443 CATCCCTTAT
*
48802453 TCACATCTCTTCTC
1 TCACAACTCTTCTC
48802467 TCACAACTCTTCTC
1 TCACAACTCTTCTC
48802481 TC
1 TC
48802483 CTCTCTCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:48809005 original size:14 final size:13
Alignment explanation
Indices: 48808983--48809023 Score: 66
Period size: 12 Copynumber: 3.2 Consensus size: 13
48808973 AAAATTCTTG
48808983 AAAAGAAAAACTC
1 AAAAGAAAAACTC
48808996 AAAGAGAAAAACTC
1 AAA-AGAAAAACTC
48809010 -AAAGAAAAACTC
1 AAAAGAAAAACTC
48809022 AA
1 AA
48809024 GAACAATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 10 0.38
13 6 0.23
14 10 0.38
ACGTcount: A:0.68, C:0.15, G:0.10, T:0.07
Consensus pattern (13 bp):
AAAAGAAAAACTC
Found at i:48812167 original size:45 final size:45
Alignment explanation
Indices: 48812098--48812192 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
48812088 TACTAATGGA
*
48812098 ACCGAACATCATTGATTAGCAAGGTTGG-TGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAACAAGG-TGGTTGCTATGTGCTGATTCC
* * *
48812143 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAACAAGGTGGTTGCTATGTGCTGATTCC
*
48812188 CCCGA
1 ACCGA
48812193 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 3 0.07
45 40 0.93
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.29
Consensus pattern (45 bp):
ACCGAACATCATTGATTAACAAGGTGGTTGCTATGTGCTGATTCC
Found at i:48814036 original size:96 final size:95
Alignment explanation
Indices: 48813866--48814050 Score: 255
Period size: 96 Copynumber: 1.9 Consensus size: 95
48813856 TTTTCTTTAG
* * *
48813866 TTGGATATTTAATTTGACATTGGGAACCCTTATGATTTTCCTAACTACACCAATAACATTGCCCA
1 TTGGATATTTAATTGGACATTGGAAACCCTTATGATTTT-CTAACTACACCAATAACATTGCACA
* * *
48813931 AAACTTGATATCTCAATCGTATTCTTTCTAT
65 AAACGTGATAGCTCAATCATATTCTTTCTAT
* *
48813962 TTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTT-TGAACTAGACCAATAACATTGGAC
1 TTGGATATTTAATTGGACATTGGAAACCCTTATGAT-TTTCT-AACTACACCAATAACATTGCAC
*
48814026 AAAAGGTGATAGCTCAATCATATTC
64 AAAACGTGATAGCTCAATCATATTC
48814051 CCCTTTTCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 1 0.01
96 74 0.95
97 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (95 bp):
TTGGATATTTAATTGGACATTGGAAACCCTTATGATTTTCTAACTACACCAATAACATTGCACAA
AACGTGATAGCTCAATCATATTCTTTCTAT
Found at i:48814968 original size:15 final size:14
Alignment explanation
Indices: 48814925--48814968 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
48814915 ACCCAAAAAA
48814925 TATTTTTT-CATTT
1 TATTTTTTGCATTT
*
48814938 TAATTTTTTGTATTT
1 T-ATTTTTTGCATTT
48814953 TATTTTTTGCACTTT
1 TATTTTTTGCA-TTT
48814968 T
1 T
48814969 TGATCACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 16 0.62
15 9 0.35
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.73
Consensus pattern (14 bp):
TATTTTTTGCATTT
Found at i:48832469 original size:32 final size:32
Alignment explanation
Indices: 48832428--48832495 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
48832418 TGTTTAATTT
48832428 TACTAAAATCTATTTCATTCATCTAGTTTGCA
1 TACTAAAATCTATTTCATTCATCTAGTTTGCA
48832460 TACTAAAATCTATTTCATTCATCTAGTTTGCA
1 TACTAAAATCTATTTCATTCATCTAGTTTGCA
48832492 TACT
1 TACT
48832496 TAGGATAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (32 bp):
TACTAAAATCTATTTCATTCATCTAGTTTGCA
Found at i:48837466 original size:26 final size:26
Alignment explanation
Indices: 48837437--48837488 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
48837427 CGTATGGGAA
48837437 CAAATACATCTTAGTTGCTGTGGACT
1 CAAATACATCTTAGTTGCTGTGGACT
*
48837463 CAAATACGTCTTAGTTGCTGTGGACT
1 CAAATACATCTTAGTTGCTGTGGACT
48837489 ATGTATCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (26 bp):
CAAATACATCTTAGTTGCTGTGGACT
Found at i:48844892 original size:6 final size:6
Alignment explanation
Indices: 48844881--48844923 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
48844871 TAAATCAATC
*
48844881 AAAAGA AAAAG- AAAAGA AAACGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
48844924 TTGAAAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:48844929 original size:12 final size:12
Alignment explanation
Indices: 48844881--48844941 Score: 70
Period size: 12 Copynumber: 5.2 Consensus size: 12
48844871 TAAATCAATC
*
48844881 AAAAGAAAAAG-
1 AAAAGAAAATGA
*
48844892 AAAAGAAAACGA
1 AAAAGAAAATGA
*
48844904 AAAAGAAAAAGA
1 AAAAGAAAATGA
*
48844916 AAAAGAAATTGA
1 AAAAGAAAATGA
*
48844928 AAAACAAAATGA
1 AAAAGAAAATGA
48844940 AA
1 AA
48844942 GAGAGTTTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
11 10 0.23
12 33 0.77
ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05
Consensus pattern (12 bp):
AAAAGAAAATGA
Found at i:48850307 original size:26 final size:27
Alignment explanation
Indices: 48850278--48850329 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
48850268 ACGCGAGATG
*
48850278 TGAAAA-GAGTATGCTCACACGAGCTA
1 TGAAAATGAGCATGCTCACACGAGCTA
* *
48850304 TGAAAATGGGCCTGCTCACACGAGCT
1 TGAAAATGAGCATGCTCACACGAGCT
48850330 GTGGGTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
TGAAAATGAGCATGCTCACACGAGCTA
Found at i:48857056 original size:26 final size:26
Alignment explanation
Indices: 48857026--48857115 Score: 126
Period size: 26 Copynumber: 3.5 Consensus size: 26
48857016 TATTGCTGCC
*
48857026 AAGCTGCCAATAATAGTATCATAGCA
1 AAGCTGCCAGTAATAGTATCATAGCA
48857052 AAGCTGCCAGTAATAGTATCATAGCA
1 AAGCTGCCAGTAATAGTATCATAGCA
* * * **
48857078 AAACTGCCAGTAACAATATCGGAGCA
1 AAGCTGCCAGTAATAGTATCATAGCA
48857104 AAGCTGCCAGTA
1 AAGCTGCCAGTA
48857116 GCATTATACT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (26 bp):
AAGCTGCCAGTAATAGTATCATAGCA
Found at i:48871651 original size:51 final size:51
Alignment explanation
Indices: 48871596--48871822 Score: 262
Period size: 51 Copynumber: 4.5 Consensus size: 51
48871586 GTAGTGTTGT
* * *
48871596 GTGAAGGCTACTACGTGAATCGCTAAATGATGGTCACATGTGTAGTACTAA
1 GTGAAGGCTACTATGTGAACCGATAAATGATGGTCACATGTGTAGTACTAA
* * * ** * *
48871647 GTGAAGGCTACAATGT-ATACCGAGAAGTTTTGGTCACGTGTGTAGTACTAT
1 GTGAAGGCTACTATGTGA-ACCGATAAATGATGGTCACATGTGTAGTACTAA
* * *
48871698 GTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTACTAA
1 GTGAAGGCTACTATGTGAACCGATAAATGATGGTCACATGTGTAGTACTAA
* * *
48871749 GTGAAGGCTACTATGTGTACCGA-AAAGCTG-TGGTCACGTGTGTAGTACTAT
1 GTGAAGGCTACTATGTGAACCGATAAA--TGATGGTCACATGTGTAGTACTAA
48871800 GTGAAGGCTACTATGTGAACCGA
1 GTGAAGGCTACTATGTGAACCGA
48871823 CGTGTGTAGT
Statistics
Matches: 145, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
50 4 0.03
51 138 0.95
52 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
GTGAAGGCTACTATGTGAACCGATAAATGATGGTCACATGTGTAGTACTAA
Found at i:48871755 original size:102 final size:102
Alignment explanation
Indices: 48871579--48871818 Score: 381
Period size: 102 Copynumber: 2.4 Consensus size: 102
48871569 TATCGATGAA
** * * *
48871579 CACGTGTGTAGTGTTGTGTGAAGGCTACTACGTGAATCGCTAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* * *
48871644 TAAGTGAAGGCTACAATGTATACCGAGAAGTTTTGGT
66 TAAGTGAAGGCTACAATGTATACCGAAAAGCTGTGGT
48871681 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* *
48871746 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTGTGGT
66 TAAGTGAAGGCTACAATGTATACCGAAAAGCTGTGGT
*
48871783 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
48871819 CCGACGTGTG
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 127 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTATACCGAAAAGCTGTGGT
Found at i:48871830 original size:38 final size:38
Alignment explanation
Indices: 48871784--48871856 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
48871774 AGCTGTGGTC
*
48871784 ACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG
48871822 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
48871857 TCGTAAAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (38 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG
Found at i:48871884 original size:88 final size:89
Alignment explanation
Indices: 48871736--48871900 Score: 253
Period size: 89 Copynumber: 1.9 Consensus size: 89
48871726 GATGATCACA
* * * *
48871736 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTGTGGTCACGTGTGTAGTACTATG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGAACCGAAAAGCTGTGATCACGTGTGTAGTACTATC
48871801 TGAAGGCTACTATGTGAACCGACG
66 TGAAGGCTACTATGTGAACCGACG
* *
48871825 TGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAA-CT-TGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGAACCG-AAAAGCTGTGATCACGTGTGTAGTACTAT
48871888 CTGAAGGCTACTA
65 CTGAAGGCTACTA
48871901 CGTGTATCGA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
88 32 0.46
89 33 0.48
90 4 0.06
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (89 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGAACCGAAAAGCTGTGATCACGTGTGTAGTACTATC
TGAAGGCTACTATGTGAACCGACG
Found at i:48871934 original size:139 final size:140
Alignment explanation
Indices: 48871682--48871943 Score: 332
Period size: 139 Copynumber: 1.9 Consensus size: 140
48871672 AGTTTTGGTC
**
48871682 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTACT
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAACATGATCACATGTGTAGTACT
* * * **** * *
48871747 AAGTGAAGGCTACTATGTGTACCGAAAAGCTGTGGTCACGTGTGTAGTACTATGTGAAGGCTACT
66 AACTGAAGGCTACTACGTGTACCGAAAAGATAAAATAACATGTGTAGTACTATGTGAAGGCTACT
48871812 ATGTGAACCG
131 ATGTGAACCG
* *
48871822 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCG-TAAAACTTGATCACGTGTGTAGTACT
1 ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAACATGATCACATGTGTAGTACT
* * * *
48871886 ATCTGAAGGCTACTACGTGTATCG-AATGATAAAAATAACATG-GATAGTACTGTGTGAA
66 AACTGAAGGCTACTACGTGTACCGAAAAGAT-AAAATAACATGTG-TAGTACTATGTGAA
48871944 AAACCCCAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
138 5 0.05
139 60 0.58
140 38 0.37
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (140 bp):
ACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAACATGATCACATGTGTAGTACT
AACTGAAGGCTACTACGTGTACCGAAAAGATAAAATAACATGTGTAGTACTATGTGAAGGCTACT
ATGTGAACCG
Found at i:48884109 original size:17 final size:16
Alignment explanation
Indices: 48884087--48884126 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
48884077 TCCATCATCA
48884087 CTCATCTCATCATCTCT
1 CTCATCTCATCATC-CT
48884104 CTCATCTC-TCATCCT
1 CTCATCTCATCATCCT
48884119 CTC-TCTCA
1 CTCATCTCA
48884127 ACTCTCTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 5 0.23
16 5 0.23
17 8 0.36
ACGTcount: A:0.15, C:0.45, G:0.00, T:0.40
Consensus pattern (16 bp):
CTCATCTCATCATCCT
Found at i:48884115 original size:19 final size:19
Alignment explanation
Indices: 48884091--48884132 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
48884081 TCATCACTCA
*
48884091 TCTCATCATCTCTCTCATC
1 TCTCATCATCTCTCTCAAC
*
48884110 TCTCATCCTCTCTCTCAAC
1 TCTCATCATCTCTCTCAAC
48884129 TCTC
1 TCTC
48884133 TTAGCTCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.40
Consensus pattern (19 bp):
TCTCATCATCTCTCTCAAC
Found at i:48892849 original size:23 final size:22
Alignment explanation
Indices: 48892823--48892870 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
48892813 ATTTATTTAA
*
48892823 TTATTT-TTTAAGTATTTAGGGAT
1 TTATTTCTTT-AGTAATTAGGG-T
48892846 TTATTTCTTTAGTAATTAGGGT
1 TTATTTCTTTAGTAATTAGGGT
48892868 TTA
1 TTA
48892871 ATATTTGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 16 0.70
24 3 0.13
ACGTcount: A:0.25, C:0.02, G:0.17, T:0.56
Consensus pattern (22 bp):
TTATTTCTTTAGTAATTAGGGT
Found at i:48893667 original size:5 final size:5
Alignment explanation
Indices: 48893657--48893681 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
48893647 GTGCTCTTGC
48893657 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
48893682 CAATCACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:48894752 original size:15 final size:16
Alignment explanation
Indices: 48894732--48894779 Score: 66
Period size: 15 Copynumber: 3.1 Consensus size: 16
48894722 TCACTTTATC
48894732 CATCATCC-CTCATCT
1 CATCATCCTCTCATCT
48894747 CATCATCCCTCTCATCT
1 CATCAT-CCTCTCATCT
48894764 C-TCATCCTCTC-TCT
1 CATCATCCTCTCATCT
48894778 CA
1 CA
48894780 ACTCTTTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.13
15 12 0.40
16 6 0.20
17 8 0.27
ACGTcount: A:0.17, C:0.48, G:0.00, T:0.35
Consensus pattern (16 bp):
CATCATCCTCTCATCT
Done.