Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 151 of 210
Found at i:50521721 original size:20 final size:20
Alignment explanation
Indices: 50521696--50521772 Score: 55
Period size: 20 Copynumber: 3.9 Consensus size: 20
50521686 AAGGAGAAAG
*
50521696 TACTGGCAGCTTGTCTGCAT
1 TACTGGCAGCTTATCTGCAT
** * **
50521716 TACTGGTGGCTAATCCACAT
1 TACTGGCAGCTTATCTGCAT
* * *
50521736 TACTGACAGTTTATCTGCAA
1 TACTGGCAGCTTATCTGCAT
* *
50521756 TACTGGTAGCTTGTCTG
1 TACTGGCAGCTTATCTG
50521773 ACACATTAGT
Statistics
Matches: 39, Mismatches: 18, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (20 bp):
TACTGGCAGCTTATCTGCAT
Found at i:50521865 original size:40 final size:40
Alignment explanation
Indices: 50521779--50521874 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
50521769 TCTGACACAT
* *
50521779 TAGTGGCTTGTCCACATTACTAGCAACTTGTCTACAATTC
1 TAGTGGCTTGTCCACATTACTAGCAACTTATCTACAATAC
* * * * ** *
50521819 TGGTGGCTTGTTCACATTATTGGCAGTTTATCTGCAATAC
1 TAGTGGCTTGTCCACATTACTAGCAACTTATCTACAATAC
50521859 TAGTGGCTTGTCCACA
1 TAGTGGCTTGTCCACA
50521875 AACTTGTGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (40 bp):
TAGTGGCTTGTCCACATTACTAGCAACTTATCTACAATAC
Found at i:50523610 original size:50 final size:50
Alignment explanation
Indices: 50523487--50523727 Score: 209
Period size: 50 Copynumber: 4.7 Consensus size: 50
50523477 GATAATAACA
* * * * *
50523487 TGCCAAAGCCATGTCCCAGACAT-GTCTTACATGGGATGTT-TCTTGT-AC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-GTTCTCATATCAG
*
50523535 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCAG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* * * * ** * *
50523585 TGCCCATGTCATATCCCAGACATGGTCTTAAAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* * **
50523635 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCATAACTTCAATG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC-A-G
* * *
50523690 ATGTCAATACCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA
50523728 TCTCTTTACT
Statistics
Matches: 158, Mismatches: 26, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
48 23 0.15
49 17 0.11
50 81 0.51
53 2 0.01
55 1 0.01
56 34 0.22
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
Found at i:50527683 original size:17 final size:16
Alignment explanation
Indices: 50527661--50527692 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
50527651 TTATAAATAA
50527661 TTGGAAGCTTGATCAGT
1 TTGGAAGCTTG-TCAGT
50527678 TTGGAAGCTTGTCAG
1 TTGGAAGCTTGTCAG
50527693 AGATCTACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.34
Consensus pattern (16 bp):
TTGGAAGCTTGTCAGT
Found at i:50528016 original size:33 final size:33
Alignment explanation
Indices: 50527974--50528118 Score: 290
Period size: 33 Copynumber: 4.4 Consensus size: 33
50527964 AGTTATATGA
50527974 GTATGATTGAATGCGGTAAGTATACATGCTTAG
1 GTATGATTGAATGCGGTAAGTATACATGCTTAG
50528007 GTATGATTGAATGCGGTAAGTATACATGCTTAG
1 GTATGATTGAATGCGGTAAGTATACATGCTTAG
50528040 GTATGATTGAATGCGGTAAGTATACATGCTTAG
1 GTATGATTGAATGCGGTAAGTATACATGCTTAG
50528073 GTATGATTGAATGCGGTAAGTATACATGCTTAG
1 GTATGATTGAATGCGGTAAGTATACATGCTTAG
50528106 GTATGATTGAATG
1 GTATGATTGAATG
50528119 ATAGTATTTG
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 112 1.00
ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34
Consensus pattern (33 bp):
GTATGATTGAATGCGGTAAGTATACATGCTTAG
Found at i:50544514 original size:17 final size:17
Alignment explanation
Indices: 50544475--50544516 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
50544465 TTTGTTCAAT
*
50544475 ATTTAATTTCTAAATTA
1 ATTTAATTTCTAAATCA
*
50544492 AATTAATTT-TATAATCA
1 ATTTAATTTCTA-AATCA
50544509 ATTTAATT
1 ATTTAATT
50544517 CATGTGACAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTTAATTTCTAAATCA
Found at i:50554937 original size:43 final size:44
Alignment explanation
Indices: 50554870--50554973 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 44
50554860 ATCAATTTGA
* * * *
50554870 GATTTATGTGTAAGACCATGTCTGGGACATTGGCATTG-TATAT
1 GATTTACGTGTAAGACCATATCTGGGACAGTGGCATCGTTATAT
* *
50554913 GATTTACGTGTAAGACCCTATCTGGGACAGTGGCATCGTTATTT
1 GATTTACGTGTAAGACCATATCTGGGACAGTGGCATCGTTATAT
*
50554957 GA-TTACATGTAAGACCA
1 GATTTACGTGTAAGACCA
50554974 CGTCTGAGAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 46 0.88
44 6 0.12
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (44 bp):
GATTTACGTGTAAGACCATATCTGGGACAGTGGCATCGTTATAT
Found at i:50554990 original size:43 final size:42
Alignment explanation
Indices: 50554834--50554991 Score: 115
Period size: 43 Copynumber: 3.6 Consensus size: 42
50554824 TGTCATATCG
* * * **
50554834 TGTAAGACCACGTCTGGGACGTTGGTATC-AATTTGAGATTTATG
1 TGTAAGACCACGTCTGGGACG-TGGCATCGTATAT--GATTTACA
* * * *
50554878 TGTAAGACCATGTCTGGGACATTGGCATTGTATATGATTTACG
1 TGTAAGACCACGTCTGGGAC-GTGGCATCGTATATGATTTACA
* *
50554921 TGTAAGACC-CTATCTGGGACAGTGGCATCGTTATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTGGCATCG-TATATGATTTACA
*
50554964 TGTAAGACCACGTCTGAGACGCTGGCAT
1 TGTAAGACCACGTCTGGGACG-TGGCAT
50554992 TATACGAACT
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 1 0.01
43 58 0.62
44 31 0.33
45 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTGGCATCGTATATGATTTACA
Found at i:50558449 original size:121 final size:121
Alignment explanation
Indices: 50558233--50558453 Score: 433
Period size: 121 Copynumber: 1.8 Consensus size: 121
50558223 ATCAGTTGTC
50558233 AGAACAGGTGAAGGGTGTTATAGTACATTGGTAAAAGAACCCCTTAAAATTCTTGATTTACACTT
1 AGAACAGGTGAAGGGTGTTATAGTACATTGGTAAAAGAACCCCTTAAAATTCTTGATTTACACTT
*
50558298 GGGCAAAGGGGTAATCAAGCAATAATAGAAGTTTTGAACAGGTGAAGGGGTAATTA
66 GGGCAAAGGGGTAATCAAGCAATAACAGAAGTTTTGAACAGGTGAAGGGGTAATTA
50558354 AGAACAGGTGAAGGGTGTTATAGTACATTGGTAAAAGAACCCCTTAAAATTCTTGATTTACACTT
1 AGAACAGGTGAAGGGTGTTATAGTACATTGGTAAAAGAACCCCTTAAAATTCTTGATTTACACTT
50558419 GGGCAAAGGGGTAATCAAGCAATAACAGAAGTTTT
66 GGGCAAAGGGGTAATCAAGCAATAACAGAAGTTTT
50558454 AGTTCAATGG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 99 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (121 bp):
AGAACAGGTGAAGGGTGTTATAGTACATTGGTAAAAGAACCCCTTAAAATTCTTGATTTACACTT
GGGCAAAGGGGTAATCAAGCAATAACAGAAGTTTTGAACAGGTGAAGGGGTAATTA
Found at i:50573434 original size:100 final size:102
Alignment explanation
Indices: 50573330--50573716 Score: 474
Period size: 100 Copynumber: 3.8 Consensus size: 102
50573320 TTACATTATA
50573330 TAAAAAATT-CATTA-AAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAA
1 TAAAAAATTACATTACAAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAA
*
50573393 TCATAAACTACTAACAAAATAACTAT-AATTTTTTTT
66 TCATAAATTACTAACAAAATAACTATAAATTTTTTTT
* *
50573429 T-TAAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTA
1 TAAAAAATTACATTAC-AAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTA
* * *
50573493 ATCATAAATTACAAACAAAATAACTATAAAATTATTTAT
65 ATCATAAATTACTAACAAAATAACTAT-AAATTTTTTTT
*
50573532 T---AAA-TACATTACTAAAAAATCACAAAACAC-ATAACTAAACACTAACAATTTATATAACCT
1 TAAAAAATTACATTAC-AAAAAATCACAAAAAACTA-AACTAAACACTAACAATTTATATAACCT
* *
50573592 AATCATAAATTACTAACAAAATAATTATAAAATTTTTTT
64 AATCATAAATTACTAACAAAATAACTATAAATTTTTTTT
* * * * *
50573631 AAAAAAAGTTACATTACTAAAAGATCAC-AAAACCATATACTAAACACTAACAA-TT-TGTAACC
1 TAAAAAA-TTACATTAC-AAAAAATCACAAAAAAC-TAAACTAAACACTAACAATTTATATAACC
*
50573693 TAATCCCATAAATTATTAACAAAA
63 TAAT--CATAAATTACTAACAAAA
50573717 ATAAATAACT
Statistics
Matches: 255, Mismatches: 18, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
98 6 0.02
99 15 0.06
100 80 0.31
101 75 0.29
102 13 0.05
103 15 0.06
104 50 0.20
105 1 0.00
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (102 bp):
TAAAAAATTACATTACAAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAA
TCATAAATTACTAACAAAATAACTATAAATTTTTTTT
Found at i:50573457 original size:101 final size:102
Alignment explanation
Indices: 50573333--50573716 Score: 509
Period size: 101 Copynumber: 3.8 Consensus size: 102
50573323 CATTATATAA
50573333 AAAATT-CATTA--AAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAATC
1 AAAATTACATTACTAAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAATC
* *
50573395 ATAAACTACTAACAAAATAACTAT-AATTTTTTTTTT
66 ATAAATTACTAACAAAATAACTATAAATTTTTTTATT
*
50573431 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATC
1 AAAATTACATTACTAAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAATC
* * *
50573496 ATAAATTACAAACAAAATAACTATAAAATTATTTATT
66 ATAAATTACTAACAAAATAACTATAAATTTTTTTATT
*
50573533 -AAA-TACATTACTAAAAAATCACAAAACAC-ATAACTAAACACTAACAATTTATATAACCTAAT
1 AAAATTACATTACTAAAAAATCACAAAAAACTA-AACTAAACACTAACAATTTATATAACCTAAT
* **
50573595 CATAAATTACTAACAAAATAATTATAAAATTTTTTTAAA
65 CATAAATTACTAACAAAATAACTAT-AAATTTTTTTATT
* * * *
50573634 AAAAGTTACATTACTAAAAGATCAC-AAAACCATATACTAAACACTAACAA-TT-TGTAACCTAA
1 AAAA-TTACATTACTAAAAAATCACAAAAAAC-TAAACTAAACACTAACAATTTATATAACCTAA
*
50573696 TCCCATAAATTATTAACAAAA
64 T--CATAAATTACTAACAAAA
50573717 ATAAATAACT
Statistics
Matches: 255, Mismatches: 18, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
98 6 0.02
99 6 0.02
100 80 0.31
101 84 0.33
102 22 0.09
103 6 0.02
104 50 0.20
105 1 0.00
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (102 bp):
AAAATTACATTACTAAAAAATCACAAAAAACTAAACTAAACACTAACAATTTATATAACCTAATC
ATAAATTACTAACAAAATAACTATAAATTTTTTTATT
Found at i:50573518 original size:50 final size:50
Alignment explanation
Indices: 50573464--50573615 Score: 141
Period size: 50 Copynumber: 3.0 Consensus size: 50
50573454 CAAAACACTA
50573464 AACTAAACACTAACAATTTATATAACCTAATCATAAATTACAAACAAAAT
1 AACTAAACACTAACAATTTATATAACCTAATCATAAATTACAAACAAAAT
* ** * * * * * * *
50573514 AACTATA-A--AATTATTTATTAAATACATTACTAAAAAATCACAAA-ACACAT
1 AACTAAACACTAACAATTTA-TATA-AC-CTAATCATAAATTACAAACA-AAAT
*
50573564 AACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACAAAAT
1 AACTAAACACTAACAATTTATATAACCTAATCATAAATTACAAACAAAAT
50573614 AA
1 AA
50573616 TTATAAAATT
Statistics
Matches: 73, Mismatches: 21, Indels: 16
0.66 0.19 0.15
Matches are distributed among these distances:
47 7 0.10
48 3 0.04
49 4 0.05
50 45 0.62
51 4 0.05
52 3 0.04
53 7 0.10
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (50 bp):
AACTAAACACTAACAATTTATATAACCTAATCATAAATTACAAACAAAAT
Found at i:50573558 original size:201 final size:202
Alignment explanation
Indices: 50573344--50573716 Score: 558
Period size: 201 Copynumber: 1.8 Consensus size: 202
50573334 AAATTCATTA
50573344 AAAAAATCACAAAAAAC-TAAACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAAC
1 AAAAAATCACAAAAAACAT-AACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAAC
***
50573408 AAAATAACTAT-AATTTTTTTTTTAAAA-TTACATTACTAAAAAATCACAAAA-CACTAAACTAA
65 AAAATAACTATAAATTTTTTTAAAAAAAGTTACATTACTAAAAAATCACAAAACCA-TAAACTAA
50573470 ACACTAACAATTTATATAACCTAAT-CATAAATTACAAACAAAATAACTATAAAATTATTTATTA
129 ACACTAACAA-TT-TATAACCTAATCCATAAATTACAAACAAAATAACTATAAAATTATTTATTA
50573534 AATACATTACT
192 AATACATTACT
* *
50573545 AAAAAATCACAAAACACATAACTAAACACTAACAATTTATATAACCTAATCATAAATTACTAACA
1 AAAAAATCACAAAAAACATAACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACA
* * *
50573610 AAATAATTATAAAATTTTTTTAAAAAAAGTTACATTACTAAAAGATCACAAAACCATATACTAAA
66 AAATAACTAT-AAATTTTTTTAAAAAAAGTTACATTACTAAAAAATCACAAAACCATAAACTAAA
* **
50573675 CACTAACAATTTGTAACCTAATCCCATAAATTATTAACAAAA
130 CACTAACAATTTATAACCTAAT-CCATAAATTACAAACAAAA
50573717 ATAAATAACT
Statistics
Matches: 154, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
201 70 0.45
202 11 0.07
203 15 0.10
204 56 0.36
205 2 0.01
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (202 bp):
AAAAAATCACAAAAAACATAACTAAACACTAACAATTTATATAACCTAATCATAAACTACTAACA
AAATAACTATAAATTTTTTTAAAAAAAGTTACATTACTAAAAAATCACAAAACCATAAACTAAAC
ACTAACAATTTATAACCTAATCCATAAATTACAAACAAAATAACTATAAAATTATTTATTAAATA
CATTACT
Found at i:50573965 original size:26 final size:27
Alignment explanation
Indices: 50573935--50573990 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
50573925 CATAATCCTA
* *
50573935 AATTACTAACAAAATAATTT-TAAAAT
1 AATTACAAACAAAACAATTTATAAAAT
* *
50573961 AATTACAAACACAACAATTTATAACAT
1 AATTACAAACAAAACAATTTATAAAAT
50573988 AAT
1 AAT
50573991 CCTGAATTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.30
Consensus pattern (27 bp):
AATTACAAACAAAACAATTTATAAAAT
Found at i:50573973 original size:60 final size:60
Alignment explanation
Indices: 50573907--50574025 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
50573897 ATACTAAACT
50573907 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAAATAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAAATAATTTTAAAATAATTAC
* * *
50573967 AAACACAACAATTTATAACATAATCCTGAATTACTAATAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAAATAATTTTAAAATAATTA
50574026 TAAAAAACAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATCCTAAATTACTAACAAAATAATTTTAAAATAATTAC
Found at i:50575744 original size:101 final size:104
Alignment explanation
Indices: 50575610--50575832 Score: 362
Period size: 101 Copynumber: 2.2 Consensus size: 104
50575600 TAAATTAAAT
50575610 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACATAATCATAAATTACTAAC
1 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACATAATCATAAATTACTAAC
50575675 AAAATAACTAT-AAATTA-T-TTTTAAAAAATACATTAC
66 AAAATAACTATAAAATTATTATTTTAAAAAATACATTAC
* *
50575711 TAAAAAATCACAAAACACTAAACTAAACCCTAACAATTTATATAACCTAATCATAAATTACTAAC
1 TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACATAATCATAAATTACTAAC
** **
50575776 AAAATAACTATAAAATTATTATTTTTTAATTTACATTAC
66 AAAATAACTATAAAATTATTATTTTAAAAAATACATTAC
*
50575815 TAAAAACTCACAAAACAC
1 TAAAAAATCACAAAACAC
50575833 AACAATTTAT
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
101 74 0.66
102 6 0.05
103 1 0.01
104 31 0.28
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (104 bp):
TAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACATAATCATAAATTACTAAC
AAAATAACTATAAAATTATTATTTTAAAAAATACATTAC
Found at i:50577508 original size:90 final size:90
Alignment explanation
Indices: 50577350--50577530 Score: 281
Period size: 90 Copynumber: 2.0 Consensus size: 90
50577340 ATGATTAGTT
* * * *
50577350 TATAAATTGTTAGTGTTTAGTTTAGGGTTTTGTGATTTTTTAGTAATGTAATTTTTAAAAAAAAT
1 TATAAATTGTTAGTGGTTAGTTTAGGGTTTCGTGACTTTTTAGTAATGAAATTTTTAAAAAAAAT
*
50577415 AATTTTATAGTTATTTTGTTAGTAA
66 AATTTTATAGTTATTTTGCTAGTAA
* ** *
50577440 TATAAATTGTTAGTGGTTAGTTTAGTGTTTCGTGACTTTTTAGTAATGAAATTTTTTTAAAAATT
1 TATAAATTGTTAGTGGTTAGTTTAGGGTTTCGTGACTTTTTAGTAATGAAATTTTTAAAAAAAAT
50577505 AATTTTATAGTTATTTTGCTAGTAA
66 AATTTTATAGTTATTTTGCTAGTAA
50577530 T
1 T
50577531 TTATGATTAG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (90 bp):
TATAAATTGTTAGTGGTTAGTTTAGGGTTTCGTGACTTTTTAGTAATGAAATTTTTAAAAAAAAT
AATTTTATAGTTATTTTGCTAGTAA
Found at i:50578928 original size:13 final size:12
Alignment explanation
Indices: 50578897--50578930 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50578887 AAATGAAATA
50578897 TTTTTATTTAAC
1 TTTTTATTTAAC
*
50578909 TTTTTATTTAAT
1 TTTTTATTTAAC
50578921 TTTGTTATTT
1 TTT-TTATTT
50578931 TTGCTAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTTATTTAAC
Found at i:50579644 original size:106 final size:104
Alignment explanation
Indices: 50579372--50579661 Score: 408
Period size: 103 Copynumber: 2.8 Consensus size: 104
50579362 TTTTAAAAAT
* * *
50579372 TTACATTACTAAAAAATCATAAAACACTAAAATAAACACTAACAATTTATATAACCTAATT-GTA
1 TTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATTCATA
*
50579436 AATTACTAAAAAAATAACTATAAAATTATTTTTTTTAAA
66 AATTACTAACAAAATAACTATAAAATTATTTTTTTTAAA
* *
50579475 TTACATTACTAAAAAATCACAAAACTCTAAACTAAACACTAACAATTTATATAACCCAA-TCATA
1 TTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATTCATA
*
50579539 AATTACTAACAAAATAACTATAAAATTATTTTTTTTTTTTAA
66 AATTACTAACAAAATAACTATAAAATTA---TTTTTTTTAAA
* * * * *
50579581 TTACATTCCTAAAAAATCACAAAACCCTATACTCAACACTAACAA-TT-TGTAACCTAATCTCAT
1 TTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAAT-TCAT
50579644 AAATTACTAACAAAATAA
65 AAATTACTAACAAAATAA
50579662 ATAACTATAA
Statistics
Matches: 168, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
102 1 0.01
103 84 0.50
104 8 0.05
105 2 0.01
106 73 0.43
ACGTcount: A:0.50, C:0.17, G:0.01, T:0.32
Consensus pattern (104 bp):
TTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATATAACCTAATTCATA
AATTACTAACAAAATAACTATAAAATTATTTTTTTTAAA
Found at i:50580486 original size:17 final size:16
Alignment explanation
Indices: 50580419--50580486 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
50580409 CCATAAACAC
*
50580419 TAAACATAAACAATTTA
1 TAAACA-AAATAATTTA
* *
50580436 T-AA-ATAATAATTAA
1 TAAACAAAATAATTTA
50580450 T-AACAAAAATAATTTA
1 TAAAC-AAAATAATTTA
*
50580466 TAAACAAAATTATTTA
1 TAAACAAAATAATTTA
50580482 CTAAA
1 -TAAA
50580487 ATAATACTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
16 22 0.54
17 8 0.20
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAACAAAATAATTTA
Found at i:50580487 original size:29 final size:30
Alignment explanation
Indices: 50580421--50580491 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 30
50580411 ATAAACACTA
* * *
50580421 AACATAAACAATTTATAAATAATAATTAAT
1 AACAAAAATAATTTATAAACAATAATTAAT
*
50580451 AACAAAAATAATTTATAAACAA-AATTATT
1 AACAAAAATAATTTATAAACAATAATTAAT
* *
50580480 TACTAAAATAAT
1 AACAAAAATAAT
50580492 ACTTACCTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
29 16 0.46
30 19 0.54
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (30 bp):
AACAAAAATAATTTATAAACAATAATTAAT
Found at i:50580534 original size:19 final size:20
Alignment explanation
Indices: 50580499--50580537 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
50580489 AATACTTACC
50580499 TTTTCTTTCTTTCTTCTTCT
1 TTTTCTTTCTTTCTTCTTCT
*
50580519 TTTTCTTT-TTTTTTCTTCT
1 TTTTCTTTCTTTCTTCTTCT
50580538 CCTTTCTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTCTTTCTTTCTTCTTCT
Found at i:50580560 original size:22 final size:22
Alignment explanation
Indices: 50580502--50580557 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
50580492 ACTTACCTTT
* *
50580502 TCTTTCTTTCTTCTTCTTTTTC
1 TCTTTCTTTCTTCTCCTTTCTC
* *
50580524 TTTTTTTTTCTTCTCCTTTCTC
1 TCTTTCTTTCTTCTCCTTTCTC
50580546 TCCTTTCTTTCT
1 T-CTTTCTTTCT
50580558 CTCTTCCGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (22 bp):
TCTTTCTTTCTTCTCCTTTCTC
Found at i:50584867 original size:51 final size:51
Alignment explanation
Indices: 50584812--50584955 Score: 182
Period size: 51 Copynumber: 2.8 Consensus size: 51
50584802 AAAGTGATGG
* * * *
50584812 TCACGTGTGTAGTACTATGTGCAGGCTATTATGTGTACCGGATTGT-TTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGTAAT-GA
* * *
50584863 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGTAATGA
* * *
50584914 TCACATGTGTAGTACCATGTGCAGGCTACTATGTGAACCGAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAA
50584956 CATCATAGAT
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 79 0.99
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGTAATGA
Found at i:50585006 original size:45 final size:45
Alignment explanation
Indices: 50584950--50585044 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
50584940 TACTATGTGA
* * * *
50584950 ACCGAACATCATAGATTAGTAAGGTGGTTGGTATGTGCTGATTCC
1 ACCGAACATCATAGATTAATAAGGTGGTTGCTATGTGCTAAATCC
* *
50584995 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGAACATCATAGATTAATAAGGTGGTTGCTATGTGCTAAATCC
50585040 ACCGA
1 ACCGA
50585045 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (45 bp):
ACCGAACATCATAGATTAATAAGGTGGTTGCTATGTGCTAAATCC
Found at i:50590274 original size:41 final size:41
Alignment explanation
Indices: 50590229--50590323 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
50590219 TAGGGGTATG
*
50590229 TATGTGCAATTCAAGGGTAACGAAGTACAAACGGGGGCACA
1 TATGTGCAATTCAAGGGTAACGAAGTACAAACGAGGGCACA
* * * **
50590270 TATGTGTAATTCAGGGGTACCGAAGTACAAACGAGGGCATG
1 TATGTGCAATTCAAGGGTAACGAAGTACAAACGAGGGCACA
*
50590311 TGTGTGCAATTCA
1 TATGTGCAATTCA
50590324 TCATTAATCT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (41 bp):
TATGTGCAATTCAAGGGTAACGAAGTACAAACGAGGGCACA
Found at i:50596740 original size:21 final size:23
Alignment explanation
Indices: 50596714--50596759 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
50596704 AATAATTACC
50596714 ATATTT-TAAAATT-TAAATTAT
1 ATATTTATAAAATTATAAATTAT
*
50596735 ATATTTATAAAATTATAATTTAT
1 ATATTTATAAAATTATAAATTAT
50596758 AT
1 AT
50596760 CGCCAAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 7 0.32
23 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATTTATAAAATTATAAATTAT
Found at i:50596755 original size:15 final size:16
Alignment explanation
Indices: 50596728--50596758 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50596718 TTTAAAATTT
50596728 AAATTATATATTTATA
1 AAATTATATATTTATA
50596744 AAATTATA-ATTTATA
1 AAATTATATATTTATA
50596759 TCGCCAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATTATATATTTATA
Found at i:50610137 original size:22 final size:19
Alignment explanation
Indices: 50610106--50610148 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 19
50610096 GTGATAATAC
50610106 ATAATATATAATTATAATTATT
1 ATAATATAT-A-T-TAATTATT
*
50610128 ATAATGTATATTAATTATT
1 ATAATATATATTAATTATT
50610147 AT
1 AT
50610149 CAACTTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 10 0.50
20 1 0.05
21 1 0.05
22 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
ATAATATATATTAATTATT
Found at i:50616726 original size:18 final size:17
Alignment explanation
Indices: 50616693--50616731 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50616683 TTTTATAAAT
50616693 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50616711 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50616728 TGTG
1 TGTG
50616732 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:50616970 original size:23 final size:23
Alignment explanation
Indices: 50616944--50617018 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
50616934 GTGTTATTGA
*
50616944 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACATT
*
50616967 TCAGTGTTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
50616990 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
50617013 TCAGTG
1 TCAGTG
50617019 TTGCACTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.17, C:0.21, G:0.27, T:0.35
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:50632425 original size:27 final size:27
Alignment explanation
Indices: 50632188--50632414 Score: 319
Period size: 27 Copynumber: 8.4 Consensus size: 27
50632178 CCGTAAAATA
** *
50632188 GGTAAAATGACAAAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
50632215 GGTAAAATGACCGAAATACCCCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
50632242 TGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
50632269 GGTAAAATGATCAAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
*
50632296 GGTAAAATGACCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
50632323 GGTAGAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
50632350 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
50632377 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
50632404 GGTAAAATGAC
1 GGTAAAATGAC
50632415 TATTACACCC
Statistics
Matches: 179, Mismatches: 21, Indels: 0
0.89 0.10 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:50633770 original size:26 final size:26
Alignment explanation
Indices: 50633741--50633795 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
50633731 AACACACCAA
* *
50633741 TATCGCAACAAAGCTACTAGTAATAG
1 TATCGCAACAAAGCTACCAGTAACAG
*
50633767 TATCGCAACAAAGCTGCCAGTAACAG
1 TATCGCAACAAAGCTACCAGTAACAG
50633793 TAT
1 TAT
50633796 ATGTGGCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (26 bp):
TATCGCAACAAAGCTACCAGTAACAG
Found at i:50633989 original size:27 final size:27
Alignment explanation
Indices: 50633969--50634056 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
50633959 GGGTATAATA
50633969 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
50633996 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
50634023 GTCATTTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
50634050 ATCATTT
1 GTCATTT
50634057 AATTGACCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:50642100 original size:36 final size:36
Alignment explanation
Indices: 50642053--50642125 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
50642043 GAATTGAAGT
50642053 TAGGGCCTCAATGATAAATTTACTAATGTTTAACCA
1 TAGGGCCTCAATGATAAATTTACTAATGTTTAACCA
50642089 TAGGGCCTCAATGATAAATTTACTAATGTTTAACCA
1 TAGGGCCTCAATGATAAATTTACTAATGTTTAACCA
50642125 T
1 T
50642126 CAAACCAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (36 bp):
TAGGGCCTCAATGATAAATTTACTAATGTTTAACCA
Found at i:50643143 original size:16 final size:15
Alignment explanation
Indices: 50643122--50643157 Score: 56
Period size: 14 Copynumber: 2.4 Consensus size: 15
50643112 AAGGGGGGAA
50643122 ATTTATTTTCTTAAGT
1 ATTTATTTT-TTAAGT
50643138 ATTTA-TTTTTAAGT
1 ATTTATTTTTTAAGT
50643152 ATTTAT
1 ATTTAT
50643158 ATTTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 11 0.58
15 3 0.16
16 5 0.26
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.64
Consensus pattern (15 bp):
ATTTATTTTTTAAGT
Found at i:50643151 original size:14 final size:14
Alignment explanation
Indices: 50643122--50643162 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
50643112 AAGGGGGGAA
50643122 ATTTATTTTCTTAAGT
1 ATTTA-TTT-TTAAGT
50643138 ATTTATTTTTAAGT
1 ATTTATTTTTAAGT
*
50643152 ATTTATATTTA
1 ATTTATTTTTA
50643163 TATTATTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (14 bp):
ATTTATTTTTAAGT
Found at i:50654641 original size:19 final size:21
Alignment explanation
Indices: 50654597--50654641 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
50654587 TTTTTTGGCT
*
50654597 TGGTGTTGAGGTGCTTTGTGTA
1 TGGTTTTGAGGT-CTTTGTGTA
50654619 -GGTTTTGAGGT-TTTG-GTA
1 TGGTTTTGAGGTCTTTGTGTA
50654637 TGGTT
1 TGGTT
50654642 GGCTTGAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
18 3 0.14
19 8 0.38
21 10 0.48
ACGTcount: A:0.09, C:0.02, G:0.40, T:0.49
Consensus pattern (21 bp):
TGGTTTTGAGGTCTTTGTGTA
Found at i:50658890 original size:20 final size:20
Alignment explanation
Indices: 50658877--50658925 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
50658867 AATTAGGCTT
50658877 AAACGAGCTGAATTGAGCTC
1 AAACGAGCTGAATTGAGCTC
* *
50658897 AAATGAGCTG-ATTGGAGCTG
1 AAACGAGCTGAATT-GAGCTC
50658917 AAACGAGCT
1 AAACGAGCT
50658926 AAAGGAGCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (20 bp):
AAACGAGCTGAATTGAGCTC
Found at i:50658934 original size:19 final size:20
Alignment explanation
Indices: 50658910--50658948 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50658900 TGAGCTGATT
50658910 GGAGCT-GAAACGAGCTAAA
1 GGAGCTAGAAACGAGCTAAA
**
50658929 GGAGCTAGAATTGAGCTAAA
1 GGAGCTAGAAACGAGCTAAA
50658949 ATCAGCTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.41, C:0.13, G:0.31, T:0.15
Consensus pattern (20 bp):
GGAGCTAGAAACGAGCTAAA
Found at i:50661826 original size:26 final size:26
Alignment explanation
Indices: 50661786--50661868 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 26
50661776 TGGTTAAAAC
*
50661786 AAACAACTGGACACAATTAATTTGTCT
1 AAACAA-TAGACACAATTAATTTGTCT
*
50661813 AAACAATAGACACAATTAATGTGTCT
1 AAACAATAGACACAATTAATTTGTCT
*
50661839 -GA-AATAAGAC-CAATTTAATTTGTTCT
1 AAACAAT-AGACACAA-TTAATTTG-TCT
50661865 AAAC
1 AAAC
50661869 TAAGACCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
24 6 0.13
25 12 0.26
26 21 0.46
27 7 0.15
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (26 bp):
AAACAATAGACACAATTAATTTGTCT
Found at i:50661873 original size:26 final size:24
Alignment explanation
Indices: 50661799--50661882 Score: 89
Period size: 26 Copynumber: 3.3 Consensus size: 24
50661789 CAACTGGACA
*
50661799 CAATTAATTTGTCTAAACAATAGAC
1 CAATTAATTTGTCTAAACTA-AGAC
*
50661824 ACAATTAATGTGTCTGAAA-TAAGAC
1 -CAATTAATTTGTCT-AAACTAAGAC
50661849 CAATTTAATTTGTTCTAAACTAAGAC
1 CAA-TTAATTTG-TCTAAACTAAGAC
50661875 CAAATTAA
1 C-AATTAA
50661883 ATCACATATT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
24 3 0.06
25 14 0.28
26 28 0.56
27 5 0.10
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (24 bp):
CAATTAATTTGTCTAAACTAAGAC
Found at i:50663345 original size:27 final size:27
Alignment explanation
Indices: 50663315--50663461 Score: 109
Period size: 27 Copynumber: 5.4 Consensus size: 27
50663305 TTCTTCAAAG
50663315 TTCACCATATATACTATTCCTTCAGTA
1 TTCACCATATATACTATTCCTTCAGTA
* * *
50663342 TTCACCATATATATTATTCATTTAG-A
1 TTCACCATATATACTATTCCTTCAGTA
* * * *
50663368 GTACACAACATATACTATTCCTTCAGTG
1 -TTCACCATATATACTATTCCTTCAGTA
** ** *
50663396 TTTGCCATAGCTACTATTCCTTCAGTG
1 TTCACCATATATACTATTCCTTCAGTA
** **
50663423 TTTGCCATAGCTACTATTCCTTCA-TA
1 TTCACCATATATACTATTCCTTCAGTA
*
50663449 GTTTACCATATAT
1 -TTCACCATATAT
50663462 GTAATTCTTC
Statistics
Matches: 96, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
26 2 0.02
27 94 0.98
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TTCACCATATATACTATTCCTTCAGTA
Found at i:50663566 original size:27 final size:26
Alignment explanation
Indices: 50663536--50663596 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
50663526 TCCTTCATAG
50663536 TTCCTTTCCATAGATAGCCACAAAGGC
1 TTCCTTT-CATAGATAGCCACAAAGGC
* * *
50663563 TTCCATTTCATAGATTGCTAGAAAGGC
1 TTCC-TTTCATAGATAGCCACAAAGGC
50663590 TTCCTTT
1 TTCCTTT
50663597 TTTTGGCGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (26 bp):
TTCCTTTCATAGATAGCCACAAAGGC
Found at i:50663735 original size:50 final size:50
Alignment explanation
Indices: 50663676--50663776 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
50663666 TTATTTTAGT
* * *
50663676 TCTTTCCATATGATGCCATAACCTACCAGCTATGGTCTTATACGATATGG
1 TCTTTCCATATGATGCCATAACCCACCAGCTATGGTCTTACACAATATGG
* *
50663726 TCTTTCCATATGATGCTATAGCCCACCAGCTATGGTCTTACACAATATGG
1 TCTTTCCATATGATGCCATAACCCACCAGCTATGGTCTTACACAATATGG
50663776 T
1 T
50663777 GCCATGGACC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34
Consensus pattern (50 bp):
TCTTTCCATATGATGCCATAACCCACCAGCTATGGTCTTACACAATATGG
Found at i:50665240 original size:20 final size:20
Alignment explanation
Indices: 50665216--50665284 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
50665206 TGTACAGGAT
*
50665216 TGTACTTCGGTGCCTTTGTT
1 TGTACTTCGGTGCCTTTGTA
*
50665236 TGTACTTTGGTGCCTTTGTA
1 TGTACTTCGGTGCCTTTGTA
*
50665256 TGCACTTCGGTGCCTTTGTA
1 TGTACTTCGGTGCCTTTGTA
50665276 TGTACTTCG
1 TGTACTTCG
50665285 ATGGCTCTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.09, C:0.20, G:0.25, T:0.46
Consensus pattern (20 bp):
TGTACTTCGGTGCCTTTGTA
Found at i:50667578 original size:24 final size:24
Alignment explanation
Indices: 50667551--50667598 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
50667541 CATTACCCAA
50667551 AGAACCCTTAATACTTTTACCTTT
1 AGAACCCTTAATACTTTTACCTTT
50667575 AGAACCCTTAATACTTTTACCTTT
1 AGAACCCTTAATACTTTTACCTTT
50667599 CCTTGCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.04, T:0.42
Consensus pattern (24 bp):
AGAACCCTTAATACTTTTACCTTT
Found at i:50683760 original size:25 final size:25
Alignment explanation
Indices: 50683724--50683784 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
50683714 CTCCTAAATT
*
50683724 TTAATTTAATTATCTAAT-TTTTCA-A
1 TTAATTAAATTAT-TAATATTTT-ATA
*
50683749 TTTATTAAATTATTAATATTTTATA
1 TTAATTAAATTATTAATATTTTATA
50683774 TTAATTAAATT
1 TTAATTAAATT
50683785 TTTGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATTAATATTTTATA
Found at i:50686637 original size:20 final size:21
Alignment explanation
Indices: 50686612--50686653 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50686602 TGGAATGGTT
50686612 AATTTAA-TCAATTTAGCTTG
1 AATTTAATTCAATTTAGCTTG
* *
50686632 AATTTAATTCATTTTAGGTTG
1 AATTTAATTCAATTTAGCTTG
50686653 A
1 A
50686654 TTGCATTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (21 bp):
AATTTAATTCAATTTAGCTTG
Found at i:50710221 original size:24 final size:23
Alignment explanation
Indices: 50710164--50710223 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
50710154 CTCTAATACT
* *
50710164 CCACAAAGGCACTTACAGAAATG
1 CCACAAAGGCACTAACAGAAAAG
*
50710187 CAACAAAGGCACTAACAGAATAAG
1 CCACAAAGGCACTAACAGAA-AAG
50710211 CCACAAAGGCACT
1 CCACAAAGGCACT
50710224 TATAGAAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.47, C:0.27, G:0.17, T:0.10
Consensus pattern (23 bp):
CCACAAAGGCACTAACAGAAAAG
Found at i:50710230 original size:24 final size:23
Alignment explanation
Indices: 50710164--50710251 Score: 95
Period size: 24 Copynumber: 3.7 Consensus size: 23
50710154 CTCTAATACT
*
50710164 CCACAAAGGCACTTACAGAAATG
1 CCACAAAGGCACTTACAGAAAAG
* *
50710187 CAACAAAGGCACTAACAGAATAAG
1 CCACAAAGGCACTTACAGAA-AAG
* *
50710211 CCACAAAGGCACTTATAGAAGACG
1 CCACAAAGGCACTTACAGAA-AAG
* *
50710235 CCATAAGGGCACTTACA
1 CCACAAAGGCACTTACA
50710252 AAACATGTGT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
23 18 0.34
24 35 0.66
ACGTcount: A:0.44, C:0.25, G:0.18, T:0.12
Consensus pattern (23 bp):
CCACAAAGGCACTTACAGAAAAG
Found at i:50711509 original size:22 final size:22
Alignment explanation
Indices: 50711454--50711551 Score: 97
Period size: 22 Copynumber: 4.5 Consensus size: 22
50711444 GCACTAATAT
*
50711454 AACAATAGGCACCGAAGTGCAA
1 AACAATAAGCACCGAAGTGCAA
* *
50711476 ATCACTAAGCACCGAAGTGCAA
1 AACAATAAGCACCGAAGTGCAA
* * * **
50711498 AACAATAGGCACTGAAGTACGG
1 AACAATAAGCACCGAAGTGCAA
* *
50711520 AACGATAAGCACCGAAGTGCGA
1 AACAATAAGCACCGAAGTGCAA
*
50711542 AACGATAAGC
1 AACAATAAGC
50711552 GCTAAAGTGC
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 61 1.00
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.11
Consensus pattern (22 bp):
AACAATAAGCACCGAAGTGCAA
Found at i:50711559 original size:22 final size:21
Alignment explanation
Indices: 50711520--50711581 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
50711510 TGAAGTACGG
* **
50711520 AACGATAAGCACCGAAGTGCGA
1 AACGATAAGCGCTAAAGTGC-A
50711542 AACGATAAGCGCTAAAGTGCA
1 AACGATAAGCGCTAAAGTGCA
50711563 AGACGATAAGTGCGCTAAA
1 A-ACGATAA--GCGCTAAA
50711582 ATTTCCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.06
22 24 0.71
24 8 0.24
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (21 bp):
AACGATAAGCGCTAAAGTGCA
Found at i:50711569 original size:44 final size:44
Alignment explanation
Indices: 50711481--50711572 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
50711471 TGCAAATCAC
* * *
50711481 TAAGCACCGAAGTGCAAAACAATAGGCACTGAAGTACGGAACGA
1 TAAGCACCGAAGTGCAAAACAATAAGCACTAAAGTACAGAACGA
* * * *
50711525 TAAGCACCGAAGTGCGAAACGATAAGCGCTAAAGTGCA-AGACGA
1 TAAGCACCGAAGTGCAAAACAATAAGCACTAAAGTACAGA-ACGA
50711569 TAAG
1 TAAG
50711573 TGCGCTAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.42, C:0.20, G:0.26, T:0.12
Consensus pattern (44 bp):
TAAGCACCGAAGTGCAAAACAATAAGCACTAAAGTACAGAACGA
Found at i:50713733 original size:33 final size:32
Alignment explanation
Indices: 50713691--50713769 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 32
50713681 CAGATCCAAC
* * *
50713691 ATTTAAACACACATTTGTGTTATAAATACGTG
1 ATTTCAACACACATCTATGTTATAAATACGTG
*
50713723 ATTTTCAACACACATCTATGTTATAGATACGTG
1 A-TTTCAACACACATCTATGTTATAAATACGTG
*
50713756 ATTTCCACACACAT
1 ATTTCAACACACAT
50713770 ACGTGTGTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
32 13 0.32
33 28 0.68
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (32 bp):
ATTTCAACACACATCTATGTTATAAATACGTG
Found at i:50718034 original size:20 final size:18
Alignment explanation
Indices: 50718006--50718051 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 18
50717996 TGTTGCTACT
50718006 ATTTTGTTGTTATTGTATA
1 ATTTTGTTGTTATTGT-TA
50718025 ATTCTTGTTGTTATTGTTA
1 ATT-TTGTTGTTATTGTTA
50718044 ATTTTGTT
1 ATTTTGTT
50718052 ACTATTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.19
19 8 0.31
20 13 0.50
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.65
Consensus pattern (18 bp):
ATTTTGTTGTTATTGTTA
Found at i:50718191 original size:13 final size:13
Alignment explanation
Indices: 50718173--50718214 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
50718163 TTGATATATT
50718173 ATATATATTAAA-A
1 ATATATA-TAAATA
50718186 ATATATATAAATA
1 ATATATATAAATA
*
50718199 ATATA-AAAAATA
1 ATATATATAAATA
50718211 ATAT
1 ATAT
50718215 GGGTCGAGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 14 0.52
13 13 0.48
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATATATATAAATA
Found at i:50724311 original size:16 final size:15
Alignment explanation
Indices: 50724287--50724321 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
50724277 GTGAGAGAGA
*
50724287 GAGAGGGGGAGGGAGG
1 GAGAAGGGGAGGG-GG
50724303 GAGAAGGGGAGGGGG
1 GAGAAGGGGAGGGGG
50724318 GAGA
1 GAGA
50724322 GAGAGTGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.29, C:0.00, G:0.71, T:0.00
Consensus pattern (15 bp):
GAGAAGGGGAGGGGG
Found at i:50731867 original size:70 final size:71
Alignment explanation
Indices: 50731780--50731930 Score: 180
Period size: 70 Copynumber: 2.2 Consensus size: 71
50731770 CTTTTGATTC
* *
50731780 GCTAACTGTGTTGTGGCTACGGTTTTGCACTTGCGAGCCTTAATACGACAACTAGGAGTTTTTAA
1 GCTAACTGTGTCGTGGCTACGGTTTTGCACCTGCGAGCCTTAATACGACAACTAGGAGTTTTTAA
*
50731845 TTCT-T
66 CTCTCT
** * * * * * * *
50731850 GCTAACTGTGTCGTGGCTGTGGTTTTTCTCCTGCGAGCCTTAGTATGATAGCTGGGAGTTTTTAA
1 GCTAACTGTGTCGTGGCTACGGTTTTGCACCTGCGAGCCTTAATACGACAACTAGGAGTTTTTAA
50731915 CTCTCT
66 CTCTCT
50731921 -CTAACTGTGT
1 GCTAACTGTGT
50731931 TGGAGGTTGT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
70 67 0.99
71 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (71 bp):
GCTAACTGTGTCGTGGCTACGGTTTTGCACCTGCGAGCCTTAATACGACAACTAGGAGTTTTTAA
CTCTCT
Found at i:50732158 original size:137 final size:137
Alignment explanation
Indices: 50731915--50732355 Score: 377
Period size: 137 Copynumber: 3.2 Consensus size: 137
50731905 GAGTTTTTAA
* * *
50731915 CTCTCTCTAACTGTGTTGGAGGTTGTGATTTTTAACCTACGAGCATTAATATTACACCTGAGAGT
1 CTCTCTCTAACTGTGTTGGAGGTTGTGATTTTTCACCTACGAGC-CT--TATGACACCTGAGAGT
* * ** * ** *
50731980 TTTTAACTCTCGCTAACTGTGCTGGAGGCTGCGAATTTTCACCTGTGAGCCTTA-GTATGACAGC
63 TTGTAACTCTCGCTAACTATGCTAAAGGCTACGAATTTTCACCTACGAGCCCTATG-ATGACAGC
*
50732044 TAATAGCTTTG
127 TAAGAGCTTTG
* * ** *
50732055 CTCT-TGCTAACTGTGTTGGAGGCTGTGATTTTTCACCTGCGAGCCTTATGACATTTGGGAGTTT
1 CTCTCT-CTAACTGTGTTGGAGGTTGTGATTTTTCACCTACGAGCCTTATGACACCTGAGAGTTT
* * ** * * **
50732119 GTAACTCTCGCTAATTATGTTAAAGGCTACGGTTTTTCACCTACGAGCCCTATGATGGCAGTTGG
65 GTAACTCTCGCTAACTATGCTAAAGGCTACGAATTTTCACCTACGAGCCCTATGATGACAGCTAA
50732184 GAGCTTTG
130 GAGCTTTG
* * * * *
50732192 TTCTCTCTAACTGTGTTGGAGGTTGTGGTTTTTCACCTACAAGCCTTAGTATGACAGCTGAGTGT
1 CTCTCTCTAACTGTGTTGGAGGTTGTGATTTTTCACCTACGAGCC-T--TATGACACCTGAGAGT
* * * * * *** * * * *
50732257 TTTTAACTCTTGTTAGCTGTG-TCGTGGCTATGATTTTTCACCTACGAGCCTTAAT-ATGACAGT
63 TTGTAACTCTCGCTAACTATGCTAAAGGCTACGAATTTTCACCTACGAGCCCT-ATGATGACAGC
*
50732320 TGAGAGCTTTG
127 TAAGAGCTTTG
*
50732331 TTCTCTCTAACTGTGTTGGAGGTTG
1 CTCTCTCTAACTGTGTTGGAGGTTG
50732356 CAGTTTTTCA
Statistics
Matches: 246, Mismatches: 48, Indels: 15
0.80 0.16 0.05
Matches are distributed among these distances:
137 106 0.43
138 3 0.01
139 69 0.28
140 68 0.28
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (137 bp):
CTCTCTCTAACTGTGTTGGAGGTTGTGATTTTTCACCTACGAGCCTTATGACACCTGAGAGTTTG
TAACTCTCGCTAACTATGCTAAAGGCTACGAATTTTCACCTACGAGCCCTATGATGACAGCTAAG
AGCTTTG
Found at i:50732229 original size:69 final size:68
Alignment explanation
Indices: 50731916--50732431 Score: 276
Period size: 69 Copynumber: 7.5 Consensus size: 68
50731906 AGTTTTTAAC
* * * ** * **
50731916 TCTCTCTAACTGTGTTGGAGGTTGTGATTTTTAACCTACGAGCATTAATATTACACCTGAGAG-T
1 TCTCTCTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCT-ATATGACAGTTGAGAGCT
50731980 TT-T
65 TTGT
* * ** ** * * * *
50731983 TAACTCTCGCTAACTGTGCTGGAGGCTGCGAATTTTCACCTGTGAGCCTTAGTATGACAGCTAAT
1 T--CTCT--CTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTA-TATGACAGTTGAG
*
50732048 AGCTTTGC
61 AGCTTTGT
* * * *
50732056 TCT-TGCTAACTGTGTTGGAGGCTGTGATTTTTCACCTGCGAG-CCT-TATGACATTTGGGAG-T
1 TCTCT-CTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTATATGACAGTTGAGAGCT
50732117 TTGT
65 TTGT
* * * ** ** * *
50732121 AACTCTCGCTAATTATGTTAAAGGCTACGGTTTTTCACCTACGAGCCCTATGATGGCAGTTGGGA
1 ---TCTCTCTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTAT-ATGACAGTTGAGA
50732186 GCTTTGT
62 GCTTTGT
* * * * *
50732193 TCTCTCTAACTGTGTTGGAGGTTGTGGTTTTTCACCTACAAGCCTTAGTATGACAGCTGAGTG-T
1 TCTCTCTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTA-TATGACAGTTGAGAGCT
50732257 TT-T
65 TTGT
* * * * * * *
50732260 TAACTCTTGTTAGCTGTG-TCGTGGCTATGATTTTTCACCTACGAGCCTTAATATGACAGTTGAG
1 T--CTC-T-CTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCT-ATATGACAGTTGAG
50732324 AGCTTTGT
61 AGCTTTGT
* ** * * * * * **
50732332 TCTCTCTAACTGTGTTGGAGGTTGCAGTTTTTCACTTGCGAGTCTTAGTGTGACAGTAAAGAGCT
1 TCTCTCTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTA-TATGACAGTTGAGAGCT
*
50732397 TTGC
65 TTGT
* * * *
50732401 TCTCTCTAACAGTATTAGAGGCTGCGGTTTT
1 TCTCTCTAACTGTGTTGGAGGCTGTGGTTTT
50732432 AATCTTGTAA
Statistics
Matches: 344, Mismatches: 80, Indels: 48
0.73 0.17 0.10
Matches are distributed among these distances:
65 4 0.01
66 10 0.03
67 3 0.01
68 45 0.13
69 156 0.45
70 46 0.13
71 69 0.20
72 10 0.03
73 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (68 bp):
TCTCTCTAACTGTGTTGGAGGCTGTGGTTTTTCACCTACGAGCCCTATATGACAGTTGAGAGCTT
TGT
Found at i:50732448 original size:69 final size:69
Alignment explanation
Indices: 50732303--50732455 Score: 155
Period size: 69 Copynumber: 2.2 Consensus size: 69
50732293 TTCACCTACG
* ** * * * * * * *
50732303 AGCCTTAATATGACAGTTGAGAGCTTTGTTCTCTCTAACTGTGTTGGAGGTTGCAGTTTTTCACT
1 AGCCTTAGTATGACAGTAAAGAGCTTTGCTCTCTCTAACAGTATTAGAGGCTGCAGGTTTTAACT
*
50732368 TGCG
66 TGCA
* *
50732372 AGTCTTAGTGTGACAGTAAAGAGCTTTGCTCTCTCTAACAGTATTAGAGGCTGC-GGTTTTAATC
1 AGCCTTAGTATGACAGTAAAGAGCTTTGCTCTCTCTAACAGTATTAGAGGCTGCAGGTTTTAA-C
*
50732436 TTGTA
65 TTGCA
*
50732441 AGCCTTAGCATGACA
1 AGCCTTAGTATGACA
50732456 CAAATGTTAT
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
68 6 0.09
69 60 0.91
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.36
Consensus pattern (69 bp):
AGCCTTAGTATGACAGTAAAGAGCTTTGCTCTCTCTAACAGTATTAGAGGCTGCAGGTTTTAACT
TGCA
Found at i:50734861 original size:45 final size:45
Alignment explanation
Indices: 50734782--50734951 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 45
50734772 CAGATACATA
* * *
50734782 GTGG-ATCAGCACATAGC-ACCACCCTTATAGTCAATGATACTCG
1 GTGGAATCAACACATAGCAACCACCTTTATAATCAATGATACTCG
*
50734825 GTGGAATCAACACATAGCAACCACCTTCATAATCAAT-AGTAC-CTG
1 GTGGAATCAACACATAGCAACCACCTTTATAATCAATGA-TACTC-G
** * *
50734870 GTGGAATCAGTACATAACAACCACCTTTATAATCAATGATACAT-A
1 GTGGAATCAACACATAGCAACCACCTTTATAATCAATGATAC-TCG
*
50734915 GTGGAATCAACACACAGCAACCACCTTTATAATCAAT
1 GTGGAATCAACACATAGCAACCACCTTTATAATCAAT
50734952 TGTACCCGAT
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
43 4 0.04
44 14 0.13
45 88 0.82
46 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.24
Consensus pattern (45 bp):
GTGGAATCAACACATAGCAACCACCTTTATAATCAATGATACTCG
Found at i:50734919 original size:90 final size:88
Alignment explanation
Indices: 50734782--50734957 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
50734772 CAGATACATA
* * * *
50734782 GTGGATCAGCACATAGCACCACCCTTATAGTCAATGATACTCGGTGGAATCAACACATAGCAACC
1 GTGGATCAGCACATAACACCACCCTTATAATCAATGATACTCAGTGGAATCAACACACAGCAACC
50734847 ACCTTCATAATCAATAGTACCTG
66 ACCTTCATAATCAATAGTACCTG
* *
50734870 GTGGAATCAGTACATAACAACCACCTTTATAATCAATGATACAT-AGTGGAATCAACACACAGCA
1 GTGG-ATCAGCACATAAC-ACCACCCTTATAATCAATGATAC-TCAGTGGAATCAACACACAGCA
* *
50734934 ACCACCTTTATAATCAATTGTACC
63 ACCACCTTCATAATCAATAGTACC
50734958 CGATACACGT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 4 0.05
89 11 0.14
90 61 0.79
91 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.24
Consensus pattern (88 bp):
GTGGATCAGCACATAACACCACCCTTATAATCAATGATACTCAGTGGAATCAACACACAGCAACC
ACCTTCATAATCAATAGTACCTG
Found at i:50742920 original size:6 final size:6
Alignment explanation
Indices: 50742909--50742933 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
50742899 GCAATAATGT
50742909 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
50742934 TGTGTTAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:50751324 original size:137 final size:137
Alignment explanation
Indices: 50751075--50751340 Score: 324
Period size: 137 Copynumber: 1.9 Consensus size: 137
50751065 AATGGGCCTG
* * * *
50751075 CTCACACAAGTTTTTGGTCGAAATGTAAGCTACATAATGTCGCTCACACAAGCTGTCAAGTATCA
1 CTCACACAAGTTGTCGGTCGAAACGTAAGCTACATAATGTCGCTCACACAAGCTATCAAGTATCA
* * * *
50751140 CAACTAATGTTGGACTTCAGCCATTGGTAGGACATTCAAGACCAGCACCTGAACCATAGTAACCT
66 CAACTAATGCTGGACTTCAGCCACTAGTAGGACATTCAAGACCAGCACCTGAAACATAGTAACCT
50751205 GAGTCTT
131 GAGTCTT
** *
50751212 CTCACACAAGTTGTCGGTC-AGAACGT-AGCTACATGGTGTTGCTCACACAAGCTATCAAGTATC
1 CTCACACAAGTTGTCGGTCGA-AACGTAAGCTACATAATGTCGCTCACACAAGCTATCAAGTAT-
* * * * *
50751275 CGCAAC-ATATGCTGGAAC-TCAGCCACTAGTAGGACATTTAGGACTAGCACCTGAAACATGGTA
64 CACAACTA-ATGCTGG-ACTTCAGCCACTAGTAGGACATTCAAGACCAGCACCTGAAACATAGTA
50751338 ACC
127 ACC
50751341 CTAATGACAT
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
136 34 0.31
137 73 0.67
138 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (137 bp):
CTCACACAAGTTGTCGGTCGAAACGTAAGCTACATAATGTCGCTCACACAAGCTATCAAGTATCA
CAACTAATGCTGGACTTCAGCCACTAGTAGGACATTCAAGACCAGCACCTGAAACATAGTAACCT
GAGTCTT
Found at i:50759180 original size:31 final size:32
Alignment explanation
Indices: 50759124--50759185 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
50759114 AGGAAAAAAA
50759124 GTTAGAGAAAAAAAATATTACAGTTTTCACCG
1 GTTAGAGAAAAAAAATATTACAGTTTTCACCG
* *
50759156 GTTAGTGAAAAAAAATA-TAGAGTTTTCACC
1 GTTAGAGAAAAAAAATATTACAGTTTTCACC
50759186 AGAATTTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 12 0.43
32 16 0.57
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (32 bp):
GTTAGAGAAAAAAAATATTACAGTTTTCACCG
Found at i:50770048 original size:4 final size:4
Alignment explanation
Indices: 50770016--50770073 Score: 62
Period size: 4 Copynumber: 14.5 Consensus size: 4
50770006 TAAATAAACA
* * * * *
50770016 AATG AGTG AATG AGTT AATG AATG GATG AATG AATG AACG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
*
50770064 AATG ATTG AA
1 AATG AATG AA
50770074 ATTGGGGCAC
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.45, C:0.02, G:0.28, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:50773012 original size:15 final size:14
Alignment explanation
Indices: 50772976--50773012 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
50772966 GCCAAGCTGT
50772976 CATAACGTTGCCTA
1 CATAACGTTGCCTA
50772990 CATAACGTTGCCTA
1 CATAACGTTGCCTA
50773004 CATTAACGT
1 CA-TAACGT
50773013 AGAGTCACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (14 bp):
CATAACGTTGCCTA
Found at i:50780925 original size:153 final size:152
Alignment explanation
Indices: 50780795--50781153 Score: 512
Period size: 152 Copynumber: 2.4 Consensus size: 152
50780785 AAAAATCTAT
*
50780795 TTTTTTTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGCTTTT-ATTTTTTTTTCAAC
1 TTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAG-TTTTGATTTTTTTTTCAAC
* * *
50780859 TATTTCAAAGTAAAAATTTTAATCTTTAAGAAAAATAGTGTTTTTTCTTTAAAAAATGAGTAAGT
65 TACTTCAAAATAAAAACTTTAATCTTTAAGAAAAATAGTGTTTTTTCTTTAAAAAATGAGTAAGT
*
50780924 TTAGCTTTTGAAAAATAAAAATA
130 TTAGATTTTGAAAAATAAAAATA
*
50780947 TTTTTTTAGTCATTTTAAAGGAAATTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTCAACT
1 TTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTCAACT
* * * * *
50781012 ACTTCAAAATAAAAGCTTTAATTTTTAAGAAAAATAGTG-TTTTT-TTT--AAAAGGAGAAAATT
66 ACTTCAAAATAAAAACTTTAATCTTTAAGAAAAATAGTGTTTTTTCTTTAAAAAATGAGTAAGTT
*
50781073 TAGATTTTGAAAAATAAAAAGAA
131 TAGATTTTGAAAAATAAAAA-TA
** * * *
50781096 AATTTTAAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAATAAAATTTTGATTTTTTT
1 TTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTT
50781154 AACTATTTCG
Statistics
Matches: 187, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
148 30 0.16
149 53 0.28
150 3 0.02
151 9 0.05
152 92 0.49
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.44
Consensus pattern (152 bp):
TTTTTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTCAACT
ACTTCAAAATAAAAACTTTAATCTTTAAGAAAAATAGTGTTTTTTCTTTAAAAAATGAGTAAGTT
TAGATTTTGAAAAATAAAAATA
Found at i:50781787 original size:16 final size:16
Alignment explanation
Indices: 50781760--50781800 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
50781750 TATATAATTT
50781760 TTTTTA-TT-TTTTCA
1 TTTTTATTTATTTTCA
50781774 TTTTTATTTATTTTCA
1 TTTTTATTTATTTTCA
* *
50781790 TGTCTATTTAT
1 TTTTTATTTAT
50781801 ATTTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 6 0.26
15 2 0.09
16 15 0.65
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.73
Consensus pattern (16 bp):
TTTTTATTTATTTTCA
Found at i:50782542 original size:3 final size:3
Alignment explanation
Indices: 50782534--50782578 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
50782524 TTAAATCTTT
50782534 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
50782579 AAGATCGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:50799844 original size:4 final size:4
Alignment explanation
Indices: 50799835--50799860 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
50799825 AACCAAATGC
50799835 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
50799861 ACATATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:50800201 original size:42 final size:42
Alignment explanation
Indices: 50800154--50800238 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
50800144 ATACAAAGAT
* *
50800154 AAATTTCAATATTTTATGATAACTAATTATAATTACTGACGA
1 AAATTTCAATATTCTATGATAACTAAGTATAATTACTGACGA
*
50800196 AAATTTCAATATTCTATGATAACTGAGTATAATTACTGACGA
1 AAATTTCAATATTCTATGATAACTAAGTATAATTACTGACGA
50800238 A
1 A
50800239 GTCTAGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (42 bp):
AAATTTCAATATTCTATGATAACTAAGTATAATTACTGACGA
Found at i:50801831 original size:23 final size:22
Alignment explanation
Indices: 50801796--50801841 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
50801786 TTTGATAATA
*
50801796 TGTTTTGATATAACAAATTAAAG
1 TGTTTTGAAATAA-AAATTAAAG
* *
50801819 TGTTTTTAAATAAAAGTTAAAG
1 TGTTTTGAAATAAAAATTAAAG
50801841 T
1 T
50801842 TGAACAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.41
Consensus pattern (22 bp):
TGTTTTGAAATAAAAATTAAAG
Found at i:50811741 original size:25 final size:26
Alignment explanation
Indices: 50811693--50811741 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
50811683 TAGATTAAAT
*
50811693 TTAATATTAATATAATCACTTTAATA
1 TTAATATTAATAAAATCACTTTAATA
50811719 TTAA-ATTAATAAAAT-ACTATTAA
1 TTAATATTAATAAAATCACT-TTAA
50811742 CATAAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAATATTAATAAAATCACTTTAATA
Found at i:50811786 original size:68 final size:69
Alignment explanation
Indices: 50811645--50811789 Score: 177
Period size: 68 Copynumber: 2.1 Consensus size: 69
50811635 TTAATCACAT
* * * *
50811645 TAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAATATAATC
1 TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATTAATAAAATC
***
50811710 ACTT
66 AAAA
* * *
50811714 TAATATTAAATTAATAAAATAC-TATTAACATAAGTATTAAATTTAATTTAATATTAAATAAAAT
1 TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATT-AATAAAAT
50811778 -AAAA
65 CAAAA
50811782 TAATATTA
1 TAATATTA
50811790 TTTTTGGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
68 37 0.57
69 28 0.43
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (69 bp):
TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATTAATAAAATC
AAAA
Found at i:50817117 original size:25 final size:26
Alignment explanation
Indices: 50817069--50817117 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
50817059 TAGATTAAAT
*
50817069 TTAATATTAATATAATCACTTTAATA
1 TTAATATTAATAAAATCACTTTAATA
50817095 TTAA-ATTAATAAAAT-ACTATTAA
1 TTAATATTAATAAAATCACT-TTAA
50817118 CATAAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAATATTAATAAAATCACTTTAATA
Found at i:50817162 original size:68 final size:69
Alignment explanation
Indices: 50817021--50817165 Score: 177
Period size: 68 Copynumber: 2.1 Consensus size: 69
50817011 TTAATCACAT
* * * *
50817021 TAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAATATAATC
1 TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATTAATAAAATC
***
50817086 ACTT
66 AAAA
* * *
50817090 TAATATTAAATTAATAAAATAC-TATTAACATAAGTATTAAATTTAATTTAATATTAAATAAAAT
1 TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATT-AATAAAAT
50817154 -AAAA
65 CAAAA
50817158 TAATATTA
1 TAATATTA
50817166 TTTTTGGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
68 37 0.57
69 28 0.43
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (69 bp):
TAATATTAAATTAATAAAATACTTATCAACATAAATATTAAATTAAATTTAATATTAATAAAATC
AAAA
Found at i:50830542 original size:26 final size:26
Alignment explanation
Indices: 50830462--50830542 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
50830452 TTCGATCACG
*
50830462 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAATACTATGTGCAGGCTACTA
* * * *
50830488 CGTGT-AT-CGGATAGTGATAGTC-AC-A
1 TGTGTAATAC-TAT-GTG-CAGGCTACTA
50830513 TGTGTAATACTATGTGCAGGCTACTA
1 TGTGTAATACTATGTGCAGGCTACTA
50830539 TGTG
1 TGTG
50830543 AACCGGTATC
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 4 0.10
25 13 0.33
26 18 0.46
27 4 0.10
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TGTGTAATACTATGTGCAGGCTACTA
Found at i:50830617 original size:46 final size:43
Alignment explanation
Indices: 50830544--50830642 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
50830534 TACTATGTGA
*
50830544 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCT-AATCTC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATC-C
* *
50830587 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
50830633 ACCGCGTATC
1 ACCG-GTATC
50830643 TGTTATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.23
45 2 0.04
46 25 0.52
47 5 0.10
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:50830787 original size:16 final size:16
Alignment explanation
Indices: 50830766--50830797 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50830756 TGATTGAAAG
*
50830766 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
50830782 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
50830798 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:50856066 original size:57 final size:57
Alignment explanation
Indices: 50855937--50856099 Score: 195
Period size: 57 Copynumber: 2.9 Consensus size: 57
50855927 AGAGAAACAA
*
50855937 GAAAGCATTTGGAAATGATTATGGTTTTCTCCTAAATT-AAATGAAAATGGAGAAATG
1 GAAA-CATTTGGAAATGATTATGGTTTTCTCCAAAATTAAAATGAAAATGGAGAAATG
* **
50855994 GAAACATTTGAAAATGATTATGGTTTTCTCCAAAATTAAAATGAAAATGGAGTGAT-
1 GAAACATTTGGAAATGATTATGGTTTTCTCCAAAATTAAAATGAAAATGGAGAAATG
*** * * * *
50856050 GAAATCATTTGGAAATGAACGTGGTTTTCACCGAAATGAAAATGACAATG
1 GAAA-CATTTGGAAATGATTATGGTTTTCTCCAAAATTAAAATGAAAATG
50856100 ACTTGAAAAA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
56 35 0.38
57 57 0.62
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (57 bp):
GAAACATTTGGAAATGATTATGGTTTTCTCCAAAATTAAAATGAAAATGGAGAAATG
Found at i:50865091 original size:8 final size:8
Alignment explanation
Indices: 50865078--50865102 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50865068 TTATCAGCTC
50865078 TTATTATT
1 TTATTATT
50865086 TTATTATT
1 TTATTATT
50865094 TTATTATT
1 TTATTATT
50865102 T
1 T
50865103 CAAATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTATT
Found at i:50869174 original size:8 final size:8
Alignment explanation
Indices: 50869161--50869192 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
50869151 TTATCAACTC
50869161 TTATTATT
1 TTATTATT
50869169 TTATTATT
1 TTATTATT
50869177 TTATTATT
1 TTATTATT
50869185 TTATTATT
1 TTATTATT
50869193 CTAAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTATTATT
Found at i:50869697 original size:22 final size:23
Alignment explanation
Indices: 50869665--50869709 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
50869655 TCATAGATTT
50869665 ATTATTCTATTTTAATTATTTTA
1 ATTATTCTATTTTAATTATTTTA
*
50869688 ATTATT-TATTTTAATTGTTTTA
1 ATTATTCTATTTTAATTATTTTA
50869710 TCTAACCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
ATTATTCTATTTTAATTATTTTA
Found at i:50877048 original size:17 final size:17
Alignment explanation
Indices: 50877028--50877074 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
50877018 TTCATTACTT
50877028 TGTTTTTTTATTACTAA
1 TGTTTTTTTATTACTAA
* *
50877045 TGTTTTATTA-TACTTA
1 TGTTTTTTTATTACTAA
*
50877061 TTTTATTTTTATTA
1 TGTT-TTTTTATTA
50877075 TATTTTTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 8 0.33
17 14 0.58
18 2 0.08
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.68
Consensus pattern (17 bp):
TGTTTTTTTATTACTAA
Found at i:50877849 original size:13 final size:13
Alignment explanation
Indices: 50877831--50877855 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50877821 TATAAAACCT
50877831 TAAAAATAAAAAA
1 TAAAAATAAAAAA
50877844 TAAAAATAAAAA
1 TAAAAATAAAAA
50877856 GTGACATGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:50881872 original size:43 final size:43
Alignment explanation
Indices: 50881819--50881903 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
50881809 TGGATAGTAC
* *
50881819 CTTGTAAGTCAAAATAGTCTATAACATTTGGTATTAGAATTAG
1 CTTGTAAGTCAAAATAGACTATAACATTTGGCATTAGAATTAG
* * *
50881862 CTTGTTAGTCAATATAGACTATAACTTTTGGCATTAGAATTA
1 CTTGTAAGTCAAAATAGACTATAACATTTGGCATTAGAATTA
50881904 ATTGTCTCCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (43 bp):
CTTGTAAGTCAAAATAGACTATAACATTTGGCATTAGAATTAG
Found at i:50883027 original size:20 final size:19
Alignment explanation
Indices: 50882980--50883034 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
50882970 GTAATAAAAT
*
50882980 AAAATAAAAATAGA-TTAG
1 AAAATAAAAATAAATTTAG
50882998 AAAATGTAAAAATAAATTTAAG
1 AAAA--TAAAAATAAATTT-AG
50883020 AAAAT-AAAATAAATT
1 AAAATAAAAATAAATT
50883035 GGTAAATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 4 0.12
19 10 0.31
20 10 0.31
21 2 0.06
22 6 0.19
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.25
Consensus pattern (19 bp):
AAAATAAAAATAAATTTAG
Found at i:50884660 original size:9 final size:9
Alignment explanation
Indices: 50884646--50884671 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
50884636 CCCAAACACT
50884646 TCCATTTTA
1 TCCATTTTA
50884655 TCCATTTTA
1 TCCATTTTA
50884664 TCCATTTT
1 TCCATTTT
50884672 CCCTTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (9 bp):
TCCATTTTA
Found at i:50885356 original size:13 final size:13
Alignment explanation
Indices: 50885338--50885393 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
50885328 TAGATTTTTC
50885338 CTAAATATAATCA
1 CTAAATATAATCA
*
50885351 CT-AA-ATAAT-T
1 CTAAATATAATCA
* *
50885361 CTAAACATTATCA
1 CTAAATATAATCA
*
50885374 CTAAATATTATCA
1 CTAAATATAATCA
50885387 CTAAATA
1 CTAAATA
50885394 ATTCTAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 2 0.06
11 7 0.19
12 6 0.17
13 21 0.58
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (13 bp):
CTAAATATAATCA
Found at i:50886000 original size:8 final size:8
Alignment explanation
Indices: 50885989--50886024 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
50885979 ATCTATATAA
50885989 TTTTTTAT
1 TTTTTTAT
50885997 TTTTTTAT
1 TTTTTTAT
50886005 TTTTTTA-
1 TTTTTTAT
50886012 -TTTTTAT
1 TTTTTTAT
50886019 TTTTTT
1 TTTTTT
50886025 CAAACGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 6 0.23
8 20 0.77
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTAT
Found at i:50886010 original size:16 final size:14
Alignment explanation
Indices: 50885988--50886024 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
50885978 TATCTATATA
*
50885988 ATTTTTTATTTTTTT
1 ATTTTTT-TATTTTT
50886003 ATTTTTTTATTTTT
1 ATTTTTTTATTTTT
50886017 ATTTTTTT
1 ATTTTTTT
50886025 CAAACGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
ATTTTTTTATTTTT
Found at i:50889593 original size:18 final size:18
Alignment explanation
Indices: 50889567--50889609 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
50889557 TTGAGGTGCC
* *
50889567 GGTTCAGTGGGAGCTGCT
1 GGTTCAGTGGAAGCTGAT
*
50889585 GGTTTAGTGGAAGCTGAT
1 GGTTCAGTGGAAGCTGAT
50889603 GGTTCAG
1 GGTTCAG
50889610 CTTCCTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.16, C:0.12, G:0.42, T:0.30
Consensus pattern (18 bp):
GGTTCAGTGGAAGCTGAT
Found at i:50898869 original size:26 final size:26
Alignment explanation
Indices: 50898835--50898884 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
50898825 TACTGAAAGG
50898835 AAACTTTACATGGACAAGACTAGTGA
1 AAACTTTACATGGACAAGACTAGTGA
50898861 AAACTTTACATGGACAAGACTAGT
1 AAACTTTACATGGACAAGACTAGT
50898885 CTATACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (26 bp):
AAACTTTACATGGACAAGACTAGTGA
Found at i:50901519 original size:16 final size:16
Alignment explanation
Indices: 50901480--50901511 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50901470 CGTTTGGTTC
50901480 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
*
50901496 ACTGTAATTGAATAGA
1 ACTGTAATGGAATAGA
50901512 GTTGTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:50901775 original size:58 final size:59
Alignment explanation
Indices: 50901696--50901851 Score: 185
Period size: 58 Copynumber: 2.7 Consensus size: 59
50901686 TTTTAATAAG
* * * * *
50901696 ATTAATATTAAAAATAATTTAATAAAAATAATAAATAATTTAACCATATT-TTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAACAAAATTATTAACATA
* *
50901754 ATTATTATTAAATATAATTTAATAAAAA-AATATATAATTTAATAAAATTATTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAACAAAATTATTAACATA
*
50901812 ATTATTATT--ATATGAATTTACTAAAATTATAATATATAAT
1 ATTATTATTAAATAT-AATTTAATAAAA--ATAATATATAAT
50901852 ACTATAAAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
56 4 0.05
57 28 0.33
58 42 0.49
59 1 0.01
60 10 0.12
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATATATAATTTAACAAAATTATTAACATA
Found at i:50903474 original size:41 final size:41
Alignment explanation
Indices: 50903408--50903511 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 41
50903398 GCTTTTGGCC
* * * * *
50903408 TGCTAGACTTAAAGTCCGAAATGTTTCACCGGCATCCAACT
1 TGCTAGACATAGAGTCTGAATTGTTTCACCAGCATCCAACT
* * *
50903449 TGCTAGACGTAGAGTCTGAATTGTTTCACTAGCATCCAGCT
1 TGCTAGACATAGAGTCTGAATTGTTTCACCAGCATCCAACT
50903490 TGCTAGACATAGAGTCTGAATT
1 TGCTAGACATAGAGTCTGAATT
50903512 ATCTCACTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (41 bp):
TGCTAGACATAGAGTCTGAATTGTTTCACCAGCATCCAACT
Found at i:50909000 original size:21 final size:21
Alignment explanation
Indices: 50908974--50909024 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
50908964 GTTTATTGAG
*
50908974 ATAATTTTTGTGATGTTAATT
1 ATAATTTTTGTAATGTTAATT
50908995 ATAATTTTTGTAATGTTAATT
1 ATAATTTTTGTAATGTTAATT
50909016 ATAATTTTT
1 ATAATTTTT
50909025 AATCAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (21 bp):
ATAATTTTTGTAATGTTAATT
Found at i:50909084 original size:47 final size:47
Alignment explanation
Indices: 50909014--50909105 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 47
50909004 GTAATGTTAA
* *
50909014 TTATAATTTTTAATCAAATAATATAAGTAATATGAAACATTGTTTAG
1 TTATAATTTTTAATCAAACAATATAAGTAATATAAAACATTGTTTAG
50909061 TTATAATTTTTAATCAAACAATATAAGTAATATAAAACATTGTTT
1 TTATAATTTTTAATCAAACAATATAAGTAATATAAAACATTGTTT
50909106 GAAGACCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (47 bp):
TTATAATTTTTAATCAAACAATATAAGTAATATAAAACATTGTTTAG
Found at i:50909189 original size:17 final size:18
Alignment explanation
Indices: 50909167--50909202 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50909157 GTTTTAAATG
50909167 AAACATATC-AAAACTAA
1 AAACATATCGAAAACTAA
*
50909184 AAACATATCGAAAATTAA
1 AAACATATCGAAAACTAA
50909202 A
1 A
50909203 TATAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.64, C:0.14, G:0.03, T:0.19
Consensus pattern (18 bp):
AAACATATCGAAAACTAA
Found at i:50910788 original size:19 final size:19
Alignment explanation
Indices: 50910764--50910800 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50910754 AGTCACCATA
50910764 CAAGAAAA-CAACCAAAAAG
1 CAAGAAAATCAA-CAAAAAG
50910783 CAAGAAAATCAACAAAAA
1 CAAGAAAATCAACAAAAA
50910801 TAGAAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.70, C:0.19, G:0.08, T:0.03
Consensus pattern (19 bp):
CAAGAAAATCAACAAAAAG
Found at i:50913273 original size:43 final size:42
Alignment explanation
Indices: 50913101--50913273 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 42
50913091 CATAGGACTC
* *
50913101 CGATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATAT-TGATTACGTGTAAGACCACGTCTAGGACGTTGGCAT
* * *
50913144 TGAT-TTGAGATTTACGTGTAAGACCATGTCTAGGACATTGGCAT
1 CGATATT--GA-TTACGTGTAAGACCACGTCTAGGACGTTGGCAT
**
50913188 CG-TATATGATTTTGTGTAAGACC-CTGTCTAGGACAGTT-GCAT
1 CGATAT-TGATTACGTGTAAGACCAC-GTCTAGGAC-GTTGGCAT
* *
50913230 CGATAGTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATA-TTGATTACGTGTAAGACCACGTCTAGGACGTTGGCAT
50913273 C
1 C
50913274 ATACGAGCTT
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
41 1 0.01
42 31 0.30
43 39 0.37
44 33 0.31
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
CGATATTGATTACGTGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:50918037 original size:484 final size:484
Alignment explanation
Indices: 50917107--50918083 Score: 1686
Period size: 484 Copynumber: 2.0 Consensus size: 484
50917097 AGTAATTTTG
50917107 AAAACTAAGTCTAATTTTATTAAAAACTTGTTTCTTAGAATTGCAGATAAGAACCACAACAAAAA
1 AAAACTAAGTCTAATTTTATTAAAAACTTGTTTCTTAGAATTGCAGATAAGAACCACAACAAAAA
* * * *
50917172 TTTTTCCTAGAACCATATTCTGTTAAAAATCAATATTTCATGTAAATTCGGTAAAACATCAATAG
66 TTTTTACTAAAACCATATTCTGTTAAAAATCAATATTTCATGTAAATTCGATAAAACATCAACAG
* *
50917237 ACATTTTAAAACCTCAAAAATCAAGTCATATTTTTGTCAAAAACTCATTTCCATTGTCGAAGCGG
131 ACAATTTAAAACCTCAAAAATCAAGTCATATTTTCGTCAAAAACTCATTTCCATTGTCGAAGCGG
50917302 AAAATAGTGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGCGTATTCTTATCAAACACTAA
196 AAAATAGTGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGCGTATTCTTATCAAACACTAA
*
50917367 TTTATGGAGTTTTTAAAACTTAATATCAAGCAATCAACTCTTGCATATCAGAATGAAAAATCCCC
261 TTTATGCAGTTTTTAAAACTTAATATCAAGCAATCAACTCTTGCATATCAGAATGAAAAATCCCC
* * * *
50917432 AAAGTAAAGTCTTATGCCATAGCCCATACTCAAACTTATTACAATCCAAAAATTAAAAATATTAA
326 AAAGTAAAGTCTCATGCCACAGCCCATACTCAAACTTACTACAATCCAAAAATAAAAAATATTAA
50917497 GATAAACTTTAATTACTTTAATTTAAAAAGAATTCCGAGAAACTCCTCCAAATGTTGTCATCGAA
391 GATAAACTTTAATTACTTTAATTTAAAAAGAATTCCGAGAAACTCCTCCAAATGTTGTCATCGAA
50917562 TCCTAACCTCAAGGTTATCTATAAAATCA
456 TCCTAACCTCAAGGTTATCTATAAAATCA
*
50917591 AAAATCTAAGTCTAATTTTATT-AAAACTTGTTTCTTAGAATTGCAGATAAGAACCACAACGAAA
1 AAAA-CTAAGTCTAATTTTATTAAAAACTTGTTTCTTAGAATTGCAGATAAGAACCACAACAAAA
*
50917655 ATTTTTACTAAAACCATATTTTGTTAAAAATCAATATTTCATGTAAATTCGATAAAACATCAACA
65 ATTTTTACTAAAACCATATTCTGTTAAAAATCAATATTTCATGTAAATTCGATAAAACATCAACA
* *
50917720 GACAATTTAAAACCTCAAAAATCAAGTCATATTTTCGTCTAAAACTTATTTCCATTGTCGAAGCG
130 GACAATTTAAAACCTCAAAAATCAAGTCATATTTTCGTCAAAAACTCATTTCCATTGTCGAAGCG
* *
50917785 GAAAATAGTGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGTGTATTCTTATCAAATACTA
195 GAAAATAGTGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGCGTATTCTTATCAAACACTA
* *
50917850 ATTTATGCAGTTTTTAAAACTTAATGTCATGCAATCAACTCTTGCATATCAGAATGAAAAATCCC
260 ATTTATGCAGTTTTTAAAACTTAATATCAAGCAATCAACTCTTGCATATCAGAATGAAAAATCCC
** * *
50917915 CAAAGTAAAGTCTCATGCCACAGTGCATATTCAAACTTACTACAATCCCAAAATAAAAAATATTA
325 CAAAGTAAAGTCTCATGCCACAGCCCATACTCAAACTTACTACAATCCAAAAATAAAAAATATTA
* *
50917980 AGATAAACTTTAATTACTTTAATTTAAAAAGAATTTCGAGAAACTCCTCCAAATGTTGTTATCGA
390 AGATAAACTTTAATTACTTTAATTTAAAAAGAATTCCGAGAAACTCCTCCAAATGTTGTCATCGA
**
50918045 ATCCTAACCTCGGGGTTATCTATAAAATCAA
455 ATCCTAACCTCAAGGTTATCTATAAAATC-A
50918076 AAAACTAA
1 AAAACTAA
50918084 AGACGGTGAG
Statistics
Matches: 464, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
484 442 0.95
485 22 0.05
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (484 bp):
AAAACTAAGTCTAATTTTATTAAAAACTTGTTTCTTAGAATTGCAGATAAGAACCACAACAAAAA
TTTTTACTAAAACCATATTCTGTTAAAAATCAATATTTCATGTAAATTCGATAAAACATCAACAG
ACAATTTAAAACCTCAAAAATCAAGTCATATTTTCGTCAAAAACTCATTTCCATTGTCGAAGCGG
AAAATAGTGATTTTGTCAAGTTTTAATAGAAACCAAGTTTCATGCGTATTCTTATCAAACACTAA
TTTATGCAGTTTTTAAAACTTAATATCAAGCAATCAACTCTTGCATATCAGAATGAAAAATCCCC
AAAGTAAAGTCTCATGCCACAGCCCATACTCAAACTTACTACAATCCAAAAATAAAAAATATTAA
GATAAACTTTAATTACTTTAATTTAAAAAGAATTCCGAGAAACTCCTCCAAATGTTGTCATCGAA
TCCTAACCTCAAGGTTATCTATAAAATCA
Found at i:50918422 original size:45 final size:45
Alignment explanation
Indices: 50918332--50918456 Score: 180
Period size: 45 Copynumber: 2.8 Consensus size: 45
50918322 AATTTACAGG
* * *
50918332 CAAGCTACCATGCAGGTTATGGATAAA-CCACCAATATTCGCAGA
1 CAAGCTGCCATGTAGGTTGTGGATAAAGCCACCAATATTCGCAGA
*
50918376 CAAGCTGCCATGTATGTTGTGGATAAAGCCACCAATATTCGCAGA
1 CAAGCTGCCATGTAGGTTGTGGATAAAGCCACCAATATTCGCAGA
* **
50918421 CAAGCTGACATGTAGGTTGTGGACGAAGCCACCAAT
1 CAAGCTGCCATGTAGGTTGTGGATAAAGCCACCAAT
50918457 TCTTCCGCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
44 23 0.32
45 49 0.68
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (45 bp):
CAAGCTGCCATGTAGGTTGTGGATAAAGCCACCAATATTCGCAGA
Found at i:50918516 original size:2 final size:2
Alignment explanation
Indices: 50918509--50918540 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
50918499 CACAATAAGC
50918509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50918541 TCATTTCAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50921521 original size:25 final size:25
Alignment explanation
Indices: 50921456--50921553 Score: 135
Period size: 25 Copynumber: 3.8 Consensus size: 25
50921446 TATATTCTCA
* * *
50921456 AAATTTTACCAGGGATAAAATTATC
1 AAATTTTACTAGGGGTAAAATCATC
50921481 AAAAATTTTA-TCAGGGGTAAAATCATC
1 --AAATTTTACT-AGGGGTAAAATCATC
50921508 AAATTTTACTAGGGGTAAAATCATC
1 AAATTTTACTAGGGGTAAAATCATC
50921533 AAATTTTACTAGGGGTAAAAT
1 AAATTTTACTAGGGGTAAAAT
50921554 AGGGATGATA
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
25 44 0.67
26 1 0.02
27 21 0.32
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (25 bp):
AAATTTTACTAGGGGTAAAATCATC
Found at i:50921534 original size:52 final size:50
Alignment explanation
Indices: 50921456--50921553 Score: 135
Period size: 52 Copynumber: 1.9 Consensus size: 50
50921446 TATATTCTCA
*
50921456 AAATTTTACCAGGGATAAAATTATCAAAAATTTTA-TCAGGGGTAAAATCATC
1 AAATTTTACCAGGGATAAAATCATC--AAATTTTACT-AGGGGTAAAATCATC
* *
50921508 AAATTTTACTAGGGGTAAAATCATCAAATTTTACTAGGGGTAAAAT
1 AAATTTTACCAGGGATAAAATCATCAAATTTTACTAGGGGTAAAAT
50921554 AGGGATGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
50 19 0.45
51 1 0.02
52 22 0.52
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (50 bp):
AAATTTTACCAGGGATAAAATCATCAAATTTTACTAGGGGTAAAATCATC
Found at i:50921737 original size:35 final size:35
Alignment explanation
Indices: 50921689--50921763 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
50921679 CTCGATGTGA
* *
50921689 GAAAGGCACAAATCCCTATCATAATACATATGAGG
1 GAAATGCAAAAATCCCTATCATAATACATATGAGG
50921724 GAAATGCAAAAATCCCTATCATAATACATATGAGG
1 GAAATGCAAAAATCCCTATCATAATACATATGAGG
50921759 GAAAT
1 GAAAT
50921764 CACACTCTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.45, C:0.17, G:0.16, T:0.21
Consensus pattern (35 bp):
GAAATGCAAAAATCCCTATCATAATACATATGAGG
Found at i:50925781 original size:18 final size:18
Alignment explanation
Indices: 50925757--50925800 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
50925747 TATAAAGCTA
50925757 AAAGAAA-AATACAAAGAT
1 AAAGAAATAA-ACAAAGAT
* *
50925775 TAAGAAATAAAGAAAGAT
1 AAAGAAATAAACAAAGAT
50925793 AAAGAAAT
1 AAAGAAAT
50925801 GAAAGCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.70, C:0.02, G:0.14, T:0.14
Consensus pattern (18 bp):
AAAGAAATAAACAAAGAT
Found at i:50929653 original size:440 final size:440
Alignment explanation
Indices: 50928831--50930151 Score: 2381
Period size: 440 Copynumber: 3.0 Consensus size: 440
50928821 TGTATCTATC
* *
50928831 AAACATAGGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAATATTCAAAT
1 AAACATAAGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
* *
50928896 ACTCAATTCACGCATTAGGAGTTATGCAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
66 ATTCAATTCACGCATTAGGAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
* *
50928961 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTAGTTATCTTGTTCACCTTGGAGAGTGCAAA
131 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
* *
50929026 CTATTGGATTCATCTAGGTTTCTTCCTGATCTATGCATAGTACTTACAGTGTGTCATAACTCGGG
196 CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCGGG
*
50929091 GTCTCTCTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
261 GTCTCTTTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
*
50929156 CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAAATTTGTCAAACCCTG
326 CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAACTTTGTCAAACCCTG
*
50929221 CAAGCAACTAGGCTACAATAATATGATATTTCTTTAACACCGCCTCTTTT
391 CAAGCAACTAGGCTACAATAACATGATATTTCTTTAACACCGCCTCTTTT
* *
50929271 AAACATAAGACAAAATAAGATGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
1 AAACATAAGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
*
50929336 ATTCAATTCACGCATTAGAAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
66 ATTCAATTCACGCATTAGGAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
50929401 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
131 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
*
50929466 CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCAGG
196 CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCGGG
*
50929531 GTCTCTTTATGCTCAAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
261 GTCTCTTTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
50929596 CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAACTTTGTCAAACCCTG
326 CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAACTTTGTCAAACCCTG
*
50929661 CAAGCAACTGGGCTACAATAACATGATATTTCTTTAACACCGCCTCTTTT
391 CAAGCAACTAGGCTACAATAACATGATATTTCTTTAACACCGCCTCTTTT
50929711 AAACATAAGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
1 AAACATAAGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
50929776 ATTCAATTCACGCATTAGGAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
66 ATTCAATTCACGCATTAGGAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
50929841 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
131 TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
50929906 CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCGGG
196 CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCGGG
50929971 GTCTCTTTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
261 GTCTCTTTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
* ** * * ** * *
50930036 CAAAGCATCAGCACGCGTGTTATCACTTCTCGGGAGCTGCTTAATCTGAACTTTGTCAAACCCTA
326 CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAACTTTGTCAAACCCTG
* * *
50930101 CAAGCAACTAGGCTACAATAGCATGATATTTGTCTAACACCGCCTCTTTT
391 CAAGCAACTAGGCTACAATAACATGATATTTCTTTAACACCGCCTCTTTT
50930151 A
1 A
50930152 CATCGTATTC
Statistics
Matches: 846, Mismatches: 35, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
440 846 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (440 bp):
AAACATAAGACAAAATATGTTGTTTTAATTCATTATGCAACTAAACAAGTTTGCAACATTCAAAT
ATTCAATTCACGCATTAGGAGTTATACAGGTATTTGTAATTTGTTATAATGACATACCTCGCAGT
TTTGAGTTGTAGCCTCGTGAGCTCCTTCTTGTCTTGGTTATCTTGTTCACCTTGGAGAGTGTAAA
CTATTGGATTCATCTAGGTTTCTTCTTGATCTATACATAGTACTTACAGTGTGTCATAACTCGGG
GTCTCTTTATGCTCGAGTAGGATTTTCCCTCTTTGTTCGATGACAACAAAGGATGCTAACTTGGA
CAAAGCATTAGCACATGTGTTGTCACTTTTCGGGAGCTATTTAATTTGAACTTTGTCAAACCCTG
CAAGCAACTAGGCTACAATAACATGATATTTCTTTAACACCGCCTCTTTT
Found at i:50930599 original size:15 final size:16
Alignment explanation
Indices: 50930576--50930612 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
50930566 TCTCAAATTC
*
50930576 AATACATATATA-TTA
1 AATATATATATATTTA
50930591 AATATATATATATTTA
1 AATATATATATATTTA
50930607 AATATA
1 AATATA
50930613 ATAAGCTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATATATTTA
Found at i:50938546 original size:39 final size:41
Alignment explanation
Indices: 50938487--50938575 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 41
50938477 AAAAATGTTT
** *
50938487 AAAAT-ATTTTTTATACTTTTTAATGATTTT-AATTTTTTA
1 AAAATAATTTTTTATACTTTTTAACAATTTTAAAGTTTTTA
*
50938526 AAAATAATTTTTTA-ATTTTTTAACAATTTTAAAGTTTTTA
1 AAAATAATTTTTTATACTTTTTAACAATTTTAAAGTTTTTA
50938566 AAAATTAATT
1 AAAA-TAATT
50938576 AAATGTTGAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 18 0.42
40 20 0.47
41 5 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (41 bp):
AAAATAATTTTTTATACTTTTTAACAATTTTAAAGTTTTTA
Found at i:50941332 original size:21 final size:21
Alignment explanation
Indices: 50941294--50941333 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50941284 TTAAATATAT
* *
50941294 ATATATGTACATATAAAAAGA
1 ATATATATACATAAAAAAAGA
*
50941315 ATATATATAGATAAAAAAA
1 ATATATATACATAAAAAAA
50941334 TTAGAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (21 bp):
ATATATATACATAAAAAAAGA
Found at i:50941966 original size:21 final size:21
Alignment explanation
Indices: 50941893--50941986 Score: 135
Period size: 19 Copynumber: 4.7 Consensus size: 21
50941883 AAATTAAATC
* *
50941893 TCTAAGATTACA-AAATCATA
1 TCTAAGATTGCATATATCATA
50941913 TCTAAGATT--ATATATCATA
1 TCTAAGATTGCATATATCATA
50941932 TCTAAGATTG--TATATCATA
1 TCTAAGATTGCATATATCATA
50941951 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
50941972 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
50941987 CCTCAAATTT
Statistics
Matches: 69, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
18 1 0.01
19 35 0.51
20 9 0.13
21 24 0.35
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:50941976 original size:40 final size:38
Alignment explanation
Indices: 50941893--50941987 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 38
50941883 AAATTAAATC
* *
50941893 TCTAAGATTACAAAATCATATCTAAGATTATATATCATA
1 TCTAAGATTGC-ATATCATATCTAAGATTATATATCATA
*
50941932 TCTAAGATTGTATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATT--ATATATCATA
50941972 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
50941988 CTCAAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
38 16 0.32
39 9 0.18
40 25 0.50
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:50945774 original size:17 final size:17
Alignment explanation
Indices: 50945752--50945785 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50945742 AAGATTAAGC
50945752 AATTCAAATTATAGAAT
1 AATTCAAATTATAGAAT
50945769 AATTCAAATTATAGAAT
1 AATTCAAATTATAGAAT
50945786 GGGTCGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
AATTCAAATTATAGAAT
Found at i:50945915 original size:25 final size:26
Alignment explanation
Indices: 50945880--50945936 Score: 107
Period size: 25 Copynumber: 2.2 Consensus size: 26
50945870 TTTTGAAATT
50945880 TGAGATGGTAAGTTTAGGGTTGTATG
1 TGAGATGGTAAGTTTAGGGTTGTATG
50945906 -GAGATGGTAAGTTTAGGGTTGTATG
1 TGAGATGGTAAGTTTAGGGTTGTATG
50945931 TGAGAT
1 TGAGAT
50945937 ACATGAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 25 0.83
26 5 0.17
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.37
Consensus pattern (26 bp):
TGAGATGGTAAGTTTAGGGTTGTATG
Found at i:50950813 original size:13 final size:14
Alignment explanation
Indices: 50950768--50950812 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
50950758 GATTATTTTA
* **
50950768 TTAATTAATTAAAA
1 TTAACTAATTAACC
50950782 TTAACTAATTAACC
1 TTAACTAATTAACC
50950796 TTAA-TAATTAACC
1 TTAACTAATTAACC
50950809 TTAA
1 TTAA
50950813 TCAAATTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 13 0.46
14 15 0.54
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (14 bp):
TTAACTAATTAACC
Done.