Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 152 of 210
Found at i:50958385 original size:52 final size:52
Alignment explanation
Indices: 50958315--50958415 Score: 150
Period size: 52 Copynumber: 1.9 Consensus size: 52
50958305 CCCCCAAAAC
*
50958315 TTTTTTCCTGTTACTTTCCCCCTAAAACTTTTACTTTCCCC-AAACCCTCAA
1 TTTTTTCCTGTTACTTTCCCCCTAAAACTTTAACTTTCCCCTAAACCCTCAA
* * *
50958366 TTTTTTCCCTTTTGCTTTCCTCCTAAAACTTTAACTTTCCCCTAAACCCT
1 TTTTTT-CCTGTTACTTTCCCCCTAAAACTTTAACTTTCCCCTAAACCCT
50958416 AAAAACTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 6 0.14
52 31 0.70
53 7 0.16
ACGTcount: A:0.20, C:0.35, G:0.02, T:0.44
Consensus pattern (52 bp):
TTTTTTCCTGTTACTTTCCCCCTAAAACTTTAACTTTCCCCTAAACCCTCAA
Found at i:50958613 original size:17 final size:19
Alignment explanation
Indices: 50958584--50958623 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
50958574 AAAAAATCAA
*
50958584 ATTTTTTACATTT-AATAT
1 ATTTTTTACATTTCAAAAT
50958602 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTTCAAAAT
50958620 ATTT
1 ATTT
50958624 GGTGACAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTTACATTTCAAAAT
Found at i:50962548 original size:26 final size:26
Alignment explanation
Indices: 50962519--50962568 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
50962509 TCTCATCCTT
50962519 ATTTTACCTC-TAGTAAAATTTTGACA
1 ATTTTACC-CATAGTAAAATTTTGACA
*
50962545 ATTTTACCCATGGTAAAATTTTGA
1 ATTTTACCCATAGTAAAATTTTGA
50962569 AAATATGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (26 bp):
ATTTTACCCATAGTAAAATTTTGACA
Found at i:50967155 original size:26 final size:27
Alignment explanation
Indices: 50967116--50967166 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
50967106 TGCAATGGTT
50967116 AGAGCATTGCTATAACAAATTCAAACA
1 AGAGCATTGCTATAACAAATTCAAACA
50967143 AGAGCA-TGCTATAACAAATTCAAA
1 AGAGCATTGCTATAACAAATTCAAA
50967167 ATCATATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.49, C:0.18, G:0.12, T:0.22
Consensus pattern (27 bp):
AGAGCATTGCTATAACAAATTCAAACA
Found at i:50968449 original size:12 final size:12
Alignment explanation
Indices: 50968426--50968488 Score: 99
Period size: 12 Copynumber: 5.0 Consensus size: 12
50968416 TGCCGAAAGC
50968426 TTCAACACAATAA
1 TTCAA-ACAATAA
50968439 TTCAAACAATAA
1 TTCAAACAATAA
50968451 TTCAAACAATAA
1 TTCAAACAATAA
50968463 TTCAAACACAATAA
1 TTC-AA-ACAATAA
50968477 TTCAAACAATAA
1 TTCAAACAATAA
50968489 CACAATCAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
12 29 0.60
13 9 0.19
14 10 0.21
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (12 bp):
TTCAAACAATAA
Found at i:50968473 original size:26 final size:24
Alignment explanation
Indices: 50968426--50968488 Score: 99
Period size: 26 Copynumber: 2.5 Consensus size: 24
50968416 TGCCGAAAGC
50968426 TTCAACACAATAATTCAAACAATAA
1 TTCAA-ACAATAATTCAAACAATAA
50968451 TTCAAACAATAATTCAAACACAATAA
1 TTCAAACAATAATTC-AA-ACAATAA
50968477 TTCAAACAATAA
1 TTCAAACAATAA
50968489 CACAATCAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 10 0.28
25 7 0.19
26 19 0.53
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (24 bp):
TTCAAACAATAATTCAAACAATAA
Found at i:50983407 original size:21 final size:21
Alignment explanation
Indices: 50983365--50983425 Score: 50
Period size: 21 Copynumber: 2.9 Consensus size: 21
50983355 TGGACATGAA
* *
50983365 AATAAATAAAGATGAAATAAG
1 AATAAATAAAAATGAAACAAG
* *
50983386 AATAAATAAAAATTATACAAG
1 AATAAATAAAAATGAAACAAG
* * * *
50983407 AGTGAATAAATATAAAACA
1 AATAAATAAAAATGAAACA
50983426 TTAAAATAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (21 bp):
AATAAATAAAAATGAAACAAG
Found at i:50983968 original size:22 final size:22
Alignment explanation
Indices: 50983940--50983984 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
50983930 TTTTTTTTTC
50983940 AAAATCA-AAATTTTCTTTAAAA
1 AAAATCACAAATTTTC-TTAAAA
*
50983962 AAAATCACTAATTTTCTTAAAA
1 AAAATCACAAATTTTCTTAAAA
50983984 A
1 A
50983985 TCAAAGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATCACAAATTTTCTTAAAA
Found at i:50984210 original size:137 final size:139
Alignment explanation
Indices: 50983928--50984228 Score: 405
Period size: 146 Copynumber: 2.2 Consensus size: 139
50983918 AGTGGCTGAA
* * * *
50983928 ATTTTTTTTTTCAAAATC-AAAATTTTCTTTAAAAAAAATCACTAATTTTCTTAAAAATCAAAGC
1 ATTTTTATTTTAAAAATCTAAAATTTTCTTTAAAAAAAATCACTAATTTTCATAAAAATCAAAGA
50983992 TTTATTTCGAAATAATTGAAAAATATCAAAACTTTGTTTTAAAATTTTAAACTTTTCATTTAAAA
66 TTTATTTCGAAATAATTGAAAAATATCAAAACTTTGTTTTAAAA--TT--A-TTTTCATTTAAAA
*
50984057 TGACTAAAAAACAT
126 TGACTAAAAAAAAT
* * *
50984071 ATTTTTATTTTAAAAATCTAAACTTTCTCTTTTTAAAAAAATCACTATTTTTCATAAAAATCAAA
1 ATTTTTATTTTAAAAATCTAAAATTT-TC-TTTAAAAAAAATCACTAATTTTCATAAAAATCAAA
* * *
50984136 GATTTATTTCGAAATAGTTGAAAAA-ATCAAAACTTTGTTTT-AAA-T-TTTTCCTTTAATATGA
64 GATTTATTTCGAAATAATTGAAAAATATCAAAACTTTGTTTTAAAATTATTTTCATTTAAAATGA
50984197 CTAAAAAAAAT
129 CTAAAAAAAAT
50984208 ATTTTTATTTTAAAAATCTAA
1 ATTTTTATTTTAAAAATCTAA
50984229 GCTCTTTTTT
Statistics
Matches: 144, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
137 45 0.31
141 1 0.01
143 16 0.11
144 9 0.06
145 18 0.12
146 55 0.38
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.43
Consensus pattern (139 bp):
ATTTTTATTTTAAAAATCTAAAATTTTCTTTAAAAAAAATCACTAATTTTCATAAAAATCAAAGA
TTTATTTCGAAATAATTGAAAAATATCAAAACTTTGTTTTAAAATTATTTTCATTTAAAATGACT
AAAAAAAAT
Found at i:50986446 original size:6 final size:6
Alignment explanation
Indices: 50986437--50986470 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
50986427 ATCATTTTTT
*
50986437 ATTTTC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
50986471 TGAGAAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:50991247 original size:38 final size:38
Alignment explanation
Indices: 50991196--50991272 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
50991186 TTGCGAACTC
50991196 TCGTGTTTACTTTTTGTTCAACTCTTTTGAGCTTCTGT
1 TCGTGTTTACTTTTTGTTCAACTCTTTTGAGCTTCTGT
* *
50991234 TCGTGTTTACTTTTTGTTCAGCTCTTTTGAGCTTTTGT
1 TCGTGTTTACTTTTTGTTCAACTCTTTTGAGCTTCTGT
50991272 T
1 T
50991273 TAACCCTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.09, C:0.17, G:0.17, T:0.57
Consensus pattern (38 bp):
TCGTGTTTACTTTTTGTTCAACTCTTTTGAGCTTCTGT
Found at i:50991303 original size:42 final size:42
Alignment explanation
Indices: 50991248--50991416 Score: 241
Period size: 42 Copynumber: 4.0 Consensus size: 42
50991238 GTTTACTTTT
* *
50991248 TGTTCAGCTCTTTTGAGCTTTTGTTTAACCCTTATGGGTTTC
1 TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATGGGTTTC
*
50991290 TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATAGGTTTC
1 TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATGGGTTTC
* * *
50991332 TGTTCAACTATTTTGAGCTTCTATTTAACTCTTATGGGTTT-
1 TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATGGGTTTC
** *
50991373 TCGTTCAACTCTTACGAGCTTCTGTTCAACCCTTATGGGTTTC
1 T-GTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATGGGTTTC
50991416 T
1 T
50991417 ATTTAGCTCT
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 110 0.98
43 1 0.01
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (42 bp):
TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATGGGTTTC
Found at i:50991407 original size:21 final size:21
Alignment explanation
Indices: 50991248--50991445 Score: 130
Period size: 21 Copynumber: 9.4 Consensus size: 21
50991238 GTTTACTTTT
* * *
50991248 TGTTCAGCTCTTTTGAGCTTT
1 TGTTCAACTCTTATGAGCTTC
* * * *
50991269 TGTTTAACCCTTATGGGTTTC
1 TGTTCAACTCTTATGAGCTTC
*
50991290 TGTTCAACTCTTTTGAGCTTC
1 TGTTCAACTCTTATGAGCTTC
* * *
50991311 TGTTTAACCCTTAT-AGGTTTC
1 TGTTCAACTCTTATGA-GCTTC
* *
50991332 TGTTCAACTATTTTGAGCTTC
1 TGTTCAACTCTTATGAGCTTC
* * * *
50991353 TATTTAACTCTTATG-GGTTT
1 TGTTCAACTCTTATGAGCTTC
*
50991373 TCGTTCAACTCTTACGAGCTTC
1 T-GTTCAACTCTTATGAGCTTC
* * *
50991395 TGTTCAACCCTTATGGGTTTC
1 TGTTCAACTCTTATGAGCTTC
* * * * *
50991416 TATTTAGCTCTCATGAGCTTT
1 TGTTCAACTCTTATGAGCTTC
50991437 TGTTCAACT
1 TGTTCAACT
50991446 TTCGGGCTTC
Statistics
Matches: 126, Mismatches: 47, Indels: 8
0.70 0.26 0.04
Matches are distributed among these distances:
20 5 0.04
21 116 0.92
22 5 0.04
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.47
Consensus pattern (21 bp):
TGTTCAACTCTTATGAGCTTC
Found at i:50991444 original size:42 final size:42
Alignment explanation
Indices: 50991248--50991440 Score: 226
Period size: 42 Copynumber: 4.6 Consensus size: 42
50991238 GTTTACTTTT
* * *
50991248 TGTTCAGCTCTTTTGAGCTTTTGTTTAACCCTTATGGGTTTC
1 TGTTCAACTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* *
50991290 TGTTCAACTCTTTTGAGCTTCTGTTTAACCCTTATAGGTTTC
1 TGTTCAACTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* * * *
50991332 TGTTCAACTATTTTGAGCTTCTATTTAACTCTTATGGGTTT-
1 TGTTCAACTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* *
50991373 TCGTTCAACTCTTACGAGCTTCTGTTCAACCCTTATGGGTTTC
1 T-GTTCAACTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
* * * * *
50991416 TATTTAGCTCTCATGAGCTTTTGTT
1 TGTTCAACTCTTATGAGCTTCTGTT
50991441 CAACTTTCGG
Statistics
Matches: 130, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 1 0.01
42 128 0.98
43 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (42 bp):
TGTTCAACTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTC
Found at i:50995923 original size:19 final size:19
Alignment explanation
Indices: 50995881--50995926 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
50995871 CCTTTATTTT
*
50995881 ATTTTCTTCTTTTTCTTTC
1 ATTTTCTTCTTTTCCTTTC
*
50995900 ATTTTTTTCTTTTCCATTTC
1 ATTTTCTTCTTTTCC-TTTC
50995920 -TTTTCTT
1 ATTTTCTT
50995927 ATAGATGGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.74
Consensus pattern (19 bp):
ATTTTCTTCTTTTCCTTTC
Found at i:51000566 original size:20 final size:20
Alignment explanation
Indices: 51000529--51000567 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51000519 TTTTAAGGTT
**
51000529 TGAAAAGTAAAATTGTTTGG
1 TGAAAAGTAAAAGGGTTTGG
51000549 TGAAAAGTAAAAGGGTTTG
1 TGAAAAGTAAAAGGGTTTG
51000568 AGGTTCGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (20 bp):
TGAAAAGTAAAAGGGTTTGG
Found at i:51002118 original size:12 final size:12
Alignment explanation
Indices: 51002101--51002125 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51002091 ACTTAATCAC
51002101 TTTAATATTAAA
1 TTTAATATTAAA
51002113 TTTAATATTAAA
1 TTTAATATTAAA
51002125 T
1 T
51002126 CTATTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:51006421 original size:34 final size:32
Alignment explanation
Indices: 51006358--51006432 Score: 87
Period size: 34 Copynumber: 2.3 Consensus size: 32
51006348 TTTTATTTCC
**
51006358 TTTTCTTTTTTTTCTCTCTCAATGTCTTTTAT
1 TTTTCTTTTTTTTCTCTCTCAATAACTTTTAT
* *
51006390 TTTTCTTTTATTTTCTTTCATCAATAACTTTTCT
1 TTTTCTTTT-TTTTCTCTC-TCAATAACTTTTAT
*
51006424 TTTTATTTT
1 TTTTCTTTT
51006433 CCCTTATTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
32 9 0.25
33 8 0.22
34 19 0.53
ACGTcount: A:0.13, C:0.16, G:0.01, T:0.69
Consensus pattern (32 bp):
TTTTCTTTTTTTTCTCTCTCAATAACTTTTAT
Found at i:51010003 original size:12 final size:12
Alignment explanation
Indices: 51009986--51010016 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
51009976 CCTCACACAC
51009986 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
51009998 CCGTGTGTTAGG
1 CCGTGTGCTAGG
51010010 CCGTGTG
1 CCGTGTG
51010017 AAAACTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.42, T:0.29
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:51015516 original size:33 final size:33
Alignment explanation
Indices: 51015466--51015544 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
51015456 GTGGTGACTA
* *
51015466 GTGAGTGGTGAGTGACGCTGGACAGCGGTGGTG
1 GTGATTGGTGAGCGACGCTGGACAGCGGTGGTG
*
51015499 GTGATTGGTGAGCGACGCTGGATAGCGGTGGTG
1 GTGATTGGTGAGCGACGCTGGACAGCGGTGGTG
51015532 GTGATTGGTGAGC
1 GTGATTGGTGAGC
51015545 AGCAGGCGAC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.15, C:0.11, G:0.49, T:0.24
Consensus pattern (33 bp):
GTGATTGGTGAGCGACGCTGGACAGCGGTGGTG
Found at i:51017986 original size:13 final size:13
Alignment explanation
Indices: 51017968--51018033 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
51017958 TTTAAACCAA
*
51017968 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
51017981 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
51017994 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
51018007 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
51018020 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
51018033 A
1 A
51018034 ATGAAGAACT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
12 4 0.08
13 40 0.83
14 4 0.08
ACGTcount: A:0.38, C:0.29, G:0.06, T:0.27
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:51022262 original size:25 final size:24
Alignment explanation
Indices: 51022210--51022263 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
51022200 TTTATGAAAA
* *
51022210 AGCTTCTAGTTGGAAGGTTTTTAG
1 AGCTTCCAATTGGAAGGTTTTTAG
*
51022234 -GCTTCCAATTGGAAGCGTTTTTTG
1 AGCTTCCAATTGGAAG-GTTTTTAG
51022258 AGCTTC
1 AGCTTC
51022264 ACATCAACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.41
Consensus pattern (24 bp):
AGCTTCCAATTGGAAGGTTTTTAG
Found at i:51024489 original size:55 final size:55
Alignment explanation
Indices: 51024428--51024537 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
51024418 TTTGAGTTGT
*
51024428 GAATGCACAGCTAAAAATGAGAAAGTTGGTTTAAACATTCCGAAGACGTTTTTGA
1 GAATGCACAGCTAAAAATGAGAAAGTTGGTTTAAACATTCAGAAGACGTTTTTGA
51024483 GAATGCACAGCTAAAAATGAGAAAGTTGGTTTAAACATTCAGAAGACGTTTTTGA
1 GAATGCACAGCTAAAAATGAGAAAGTTGGTTTAAACATTCAGAAGACGTTTTTGA
51024538 TCATAAATTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (55 bp):
GAATGCACAGCTAAAAATGAGAAAGTTGGTTTAAACATTCAGAAGACGTTTTTGA
Found at i:51053679 original size:20 final size:22
Alignment explanation
Indices: 51053638--51053684 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
51053628 TTTTCCATGG
51053638 TTAGATCCAATTTTTATATATA
1 TTAGATCCAATTTTTATATATA
*
51053660 TTAGATTCAATTTTTATATATA
1 TTAGATCCAATTTTTATATATA
51053682 TTA
1 TTA
51053685 ACATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.53
Consensus pattern (22 bp):
TTAGATCCAATTTTTATATATA
Found at i:51053693 original size:22 final size:22
Alignment explanation
Indices: 51053645--51053695 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
51053635 TGGTTAGATC
*
51053645 CAATTTTTATATATATTAGATT
1 CAATTTTTATATATATTACATT
51053667 CAATTTTTATATATATTAACATT
1 CAATTTTTATATATATT-ACATT
51053690 -AATTTT
1 CAATTTT
51053696 GCTGCTGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (22 bp):
CAATTTTTATATATATTACATT
Found at i:51054692 original size:19 final size:19
Alignment explanation
Indices: 51054670--51054714 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
51054660 CATTAAAAAT
51054670 TTTAATAATTTAAGTATAA
1 TTTAATAATTTAAGTATAA
* *
51054689 TTTAATTATTTAATTATAA
1 TTTAATAATTTAAGTATAA
*
51054708 TTAAATA
1 TTTAATA
51054715 TTTTTCGATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTAATAATTTAAGTATAA
Found at i:51054979 original size:18 final size:17
Alignment explanation
Indices: 51054956--51054990 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51054946 GTCCAAATGT
51054956 ATTATGTAAAAGAGAGAG
1 ATTATGTAAAAGA-AGAG
*
51054974 ATTATGTTAAAGAAGAG
1 ATTATGTAAAAGAAGAG
51054991 TTGGCTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (17 bp):
ATTATGTAAAAGAAGAG
Found at i:51056538 original size:9 final size:9
Alignment explanation
Indices: 51056526--51056569 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
51056516 AATTGATTGC
51056526 AATGATGAG
1 AATGATGAG
*
51056535 AATGATGAT
1 AATGATGAG
*
51056544 AAGGATGAG
1 AATGATGAG
*
51056553 GATGATGAG
1 AATGATGAG
*
51056562 GATGATGA
1 AATGATGA
51056570 TTCTTCGATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.36, T:0.23
Consensus pattern (9 bp):
AATGATGAG
Found at i:51056787 original size:26 final size:25
Alignment explanation
Indices: 51056744--51056792 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
51056734 GTTTTCAATG
*
51056744 TTCTGTTGCTGCTGTTGGGTGCTAAT
1 TTCTGTTGCTACTGTT-GGTGCTAAT
* *
51056770 TTCTGTTGCTATTTTTGGTGCTA
1 TTCTGTTGCTACTGTTGGTGCTA
51056793 TTTTGCTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.08, C:0.14, G:0.27, T:0.51
Consensus pattern (25 bp):
TTCTGTTGCTACTGTTGGTGCTAAT
Found at i:51061910 original size:18 final size:18
Alignment explanation
Indices: 51061887--51061924 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51061877 CAGCCTGTGT
*
51061887 CCCAGCCCGTGCCCGTGC
1 CCCAGCCCATGCCCGTGC
51061905 CCCAGCCCATGCCCGTGC
1 CCCAGCCCATGCCCGTGC
51061923 CC
1 CC
51061925 GTGTAAGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.58, G:0.24, T:0.11
Consensus pattern (18 bp):
CCCAGCCCATGCCCGTGC
Found at i:51063639 original size:40 final size:40
Alignment explanation
Indices: 51063591--51063697 Score: 169
Period size: 40 Copynumber: 2.7 Consensus size: 40
51063581 AGATCAACCG
* * *
51063591 AACACACCAGACAGAAGCACATAATAGCTAATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGCTAATCCAACCAA
* *
51063631 AACACACCAAAAAGAAGCTCATAAGAGCTTATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAGCTAATCCAACCAA
51063671 AACACACCAAACAGAAGCTCATAAGAG
1 AACACACCAAACAGAAGCTCATAAGAG
51063698 TTGGTCCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.50, C:0.28, G:0.11, T:0.10
Consensus pattern (40 bp):
AACACACCAAACAGAAGCTCATAAGAGCTAATCCAACCAA
Found at i:51063706 original size:40 final size:39
Alignment explanation
Indices: 51063591--51063723 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 39
51063581 AGATCAACCG
* * * *
51063591 AACACACCAGACAGAAGCACATAATAGCTAATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAG-TTATCCAACCAA
*
51063631 AACACACCAAAAAGAAGCTCATAAGAGCTTATCCAACCAA
1 AACACACCAAACAGAAGCTCATAAGAG-TTATCCAACCAA
* * *
51063671 AACACACCAAACAGAAGCTCATAAGAGTTGGTCCAATCGA
1 AACACACCAAACAGAAGCTCATAAGAGTT-ATCCAACCAA
*
51063711 AACACGCCAAACA
1 AACACACCAAACA
51063724 AAAAGTATAA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 2 0.02
40 80 0.98
ACGTcount: A:0.48, C:0.29, G:0.12, T:0.11
Consensus pattern (39 bp):
AACACACCAAACAGAAGCTCATAAGAGTTATCCAACCAA
Found at i:51071705 original size:22 final size:22
Alignment explanation
Indices: 51071676--51071727 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
51071666 AGTTGTAAAG
* *
51071676 TTTTATTTTTATTTA-TTTATT
1 TTTTATTTTTACTTAGTTTAAT
51071697 TATTTATTTTTACTTAGTTTAAT
1 T-TTTATTTTTACTTAGTTTAAT
51071720 TTTTATTT
1 TTTTATTT
51071728 AAATACTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 20 0.74
23 6 0.22
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTTATTTTTACTTAGTTTAAT
Found at i:51080373 original size:40 final size:39
Alignment explanation
Indices: 51080329--51080417 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
51080319 GACTTTAGTA
*
51080329 AATTGGGTTGTCTTTTAGTTTTAGTTTTATTGGATTGAG-T
1 AATTGGGTTGAC-TTTAGTTTTAGTTTTATTGGATTG-GCT
** *
51080369 AATTGGGTAAACTTTAGTTTTAGTTTTATTGGGTTGGCT
1 AATTGGGTTGACTTTAGTTTTAGTTTTATTGGATTGGCT
51080408 AATTGGGTTG
1 AATTGGGTTG
51080418 GGTAATTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.02
39 32 0.76
40 9 0.21
ACGTcount: A:0.19, C:0.03, G:0.27, T:0.51
Consensus pattern (39 bp):
AATTGGGTTGACTTTAGTTTTAGTTTTATTGGATTGGCT
Found at i:51080414 original size:13 final size:13
Alignment explanation
Indices: 51080396--51080425 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51080386 TTTTAGTTTT
51080396 ATTGGGTTGGCTA
1 ATTGGGTTGGCTA
*
51080409 ATTGGGTTGGGTA
1 ATTGGGTTGGCTA
51080422 ATTG
1 ATTG
51080426 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.03, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGCTA
Found at i:51081703 original size:37 final size:37
Alignment explanation
Indices: 51081662--51081735 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
51081652 ACAATGAGTT
*
51081662 GTGTTTGTGTCCCTTCCTTATTAACATACAATTTTGG
1 GTGTTTGTGTCCCATCCTTATTAACATACAATTTTGG
51081699 GTGTTTGTGTCCCATCCTTATTAACATACAATTTTGG
1 GTGTTTGTGTCCCATCCTTATTAACATACAATTTTGG
51081736 CTCACTCTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (37 bp):
GTGTTTGTGTCCCATCCTTATTAACATACAATTTTGG
Found at i:51088543 original size:30 final size:30
Alignment explanation
Indices: 51088509--51088573 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
51088499 CAACTTAACA
*
51088509 AACAAATGCCTCTAAAGTAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
51088539 AACAAATGCCTTTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
51088569 AACAA
1 AACAA
51088574 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.15, G:0.05, T:0.23
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:51088628 original size:22 final size:22
Alignment explanation
Indices: 51088603--51088645 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
51088593 TATTCAAACA
51088603 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
51088625 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
51088646 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:51088649 original size:11 final size:11
Alignment explanation
Indices: 51088610--51088650 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
51088600 ACAATAACAA
51088610 CAAAATAGTAG
1 CAAAATAGTAG
* *
51088621 CAACATAATAG
1 CAAAATAGTAG
*
51088632 TAAAATAGTAG
1 CAAAATAGTAG
51088643 CAAAATAG
1 CAAAATAG
51088651 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:51089933 original size:22 final size:22
Alignment explanation
Indices: 51089903--51089945 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51089893 ACAGCAGAAC
* *
51089903 AGGTTTTTAGCGGCGTTTTTTT
1 AGGTCTTTAGCGGCGCTTTTTT
51089925 AGGTCTTTAGCGGCGCTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
51089946 AACGCCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.14, G:0.28, T:0.49
Consensus pattern (22 bp):
AGGTCTTTAGCGGCGCTTTTTT
Found at i:51090088 original size:42 final size:41
Alignment explanation
Indices: 51090036--51090328 Score: 283
Period size: 42 Copynumber: 7.0 Consensus size: 41
51090026 CGCTTACATA
*
51090036 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* * *
51090077 AAAAATGCGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTAC
1 AAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* **
51090119 AAATAAACGCCGCTAAAGAACATAATCTTTAGCGGCGCTTAG
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
*
51090161 AAATAAACGCCGCTAAATATCATGTTCTTTAGCGGCGCTTAGG
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-G
* *
51090204 AAAAAAACGCCGCTAAAGGTTCATGTTC-TTAGCGGCGCTTTTG
1 -AAAAAACGCCGCTAAA-GATCATGTTCTTTAGCGGCGC-TTAG
* * * *
51090247 AGGAAAACG-CTCTAAA-AGTAATGTTCTATAGCGGCGCTT-G
1 A-AAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAG
* *
51090287 TTCAAAAATGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 --AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
51090329 TTTCACAAAT
Statistics
Matches: 212, Mismatches: 26, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
40 1 0.00
41 20 0.09
42 145 0.68
43 33 0.16
44 13 0.06
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (41 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:51090282 original size:127 final size:124
Alignment explanation
Indices: 51090036--51090328 Score: 301
Period size: 127 Copynumber: 2.3 Consensus size: 124
51090026 CGCTTACATA
* **
51090036 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTATAAAAATGCGCCGCTAAAGATCATG
1 AAAAAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATG
* *
51090101 TTCTTTAGTGGCGCTTACAAATAAACGCCGCTAAAGAACATAATCTTTAGCGGCGCTTAG-
65 TTCTTTAGCGGCGCTTACAAATAAACGCCGCTAAAGAACATAATCTATAGCGGCGCTT-GT
*
51090161 AAATAAACGCCGCTAAATATCATGTTCTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAGGTTC
1 AAA-AAACGCCGCTAAA-ATCATGTTCTTTAGCGGCGCTTA-GAAAAAAACGCCGCTAAA-GATC
** * * * **
51090226 ATGTTC-TTAGCGGCGCTTTTGAGGA-AAACG-CTCTAAAAGTA-ATGTTCTATAGCGGCGCTTG
62 ATGTTCTTTAGCGGCGC-TTACA-AATAAACGCCGCT-AAAGAACATAATCTATAGCGGCGCTTG
51090287 TT
124 -T
* *
51090289 CAAAAATGCCGCTAAAAGT-AGTGTTCTTTAGCGGCGCTTA
1 AAAAAACGCCGCTAAAA-TCA-TGTTCTTTAGCGGCGCTTA
51090329 TTTCACAAAT
Statistics
Matches: 142, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
125 3 0.02
126 39 0.27
127 75 0.53
128 24 0.17
129 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (124 bp):
AAAAAACGCCGCTAAAATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
TCTTTAGCGGCGCTTACAAATAAACGCCGCTAAAGAACATAATCTATAGCGGCGCTTGT
Found at i:51095229 original size:22 final size:22
Alignment explanation
Indices: 51095203--51095251 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
51095193 CCCTAAGTTT
*
51095203 AACCCGTAACCTTTATACTTTA
1 AACCCGTAACCTTTAAACTTTA
51095225 AACCCGTAACCTTTAAACTTTA
1 AACCCGTAACCTTTAAACTTTA
51095247 AACCC
1 AACCC
51095252 TAAACTACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.31
Consensus pattern (22 bp):
AACCCGTAACCTTTAAACTTTA
Found at i:51096106 original size:164 final size:164
Alignment explanation
Indices: 51095910--51096400 Score: 770
Period size: 164 Copynumber: 3.0 Consensus size: 164
51095900 GTTTTGGTTC
* * ** *
51095910 AGATATTTTGTGGCGTTTTCATATAAGCGCCACTAAATGTAACATAGCTTAAGA-CAAACCACTG
1 AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAA-CACTG
* * *** * * *
51095974 CGTTTTGTTAAGATACGTTGCGGCGCTTTACCCAAAGCGCCGCTAAATATATTCTTTAACGGCGT
65 CGTTTTCTTAAGATAAGTTGCGGCGCTTCGTCTAAATCGCCGCTAAAGATATTCTTTAACGGCGT
51096039 TTTCTAGTAAGCGCCACTAATTGAAGTATACATCG
130 TTTCTAGTAAGCGCCACTAATTGAAGTATACATCG
*
51096074 AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAACATTGC
1 AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAACACTGC
51096139 GTTTTCTTAAGATAAGTTGCGGCGCTTCGTCTAAATCGCCGCTAAAGATATTCTTTAACGGCGTT
66 GTTTTCTTAAGATAAGTTGCGGCGCTTCGTCTAAATCGCCGCTAAAGATATTCTTTAACGGCGTT
51096204 TTCTAGTAAGCGCCACTAATTGAAGTATACATCG
131 TTCTAGTAAGCGCCACTAATTGAAGTATACATCG
51096238 AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAACACTGC
1 AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAACACTGC
* * *
51096303 GTTTTCTTAAGATAAGTTGCAGCGCTTCGTCTAAATCACCGCTAAAGATAATCTTTAACGGCGTT
66 GTTTTCTTAAGATAAGTTGCGGCGCTTCGTCTAAATCGCCGCTAAAGATATTCTTTAACGGCGTT
* * *
51096368 TTCTTGTAAGCGTCACTAATAT-TAGTATACATC
131 TTCTAGTAAGCGCCACTAAT-TGAAGTATACATC
51096401 AAAATTAAAA
Statistics
Matches: 304, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
164 299 0.98
165 5 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (164 bp):
AGATTTTTTGCGGCGTTTTCCCATAAGCGCCACTAAATGTAACATGGCTTAAGACCAAACACTGC
GTTTTCTTAAGATAAGTTGCGGCGCTTCGTCTAAATCGCCGCTAAAGATATTCTTTAACGGCGTT
TTCTAGTAAGCGCCACTAATTGAAGTATACATCG
Found at i:51096898 original size:32 final size:32
Alignment explanation
Indices: 51096861--51096938 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
51096851 GTCAAATTTC
* * *
51096861 TAATCAATTCTAATTTCTTTAAGGGTTTGTAT
1 TAATCAATTCTAATTTCTTCAAGGATTTATAT
* *
51096893 TAATCAATCCTATTTTCTTCAAGGATTTATAT
1 TAATCAATTCTAATTTCTTCAAGGATTTATAT
*
51096925 TAATTATATTCTAA
1 TAATCA-ATTCTAA
51096939 AAATTATTAC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
32 32 0.86
33 5 0.14
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.49
Consensus pattern (32 bp):
TAATCAATTCTAATTTCTTCAAGGATTTATAT
Found at i:51114335 original size:37 final size:37
Alignment explanation
Indices: 51114272--51114344 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 37
51114262 CCTGTTTCTG
* *
51114272 TCAAACATAAAGAGATCACTGAACTTGTGCCAAATCC
1 TCAAACATAAAGAGATCACTGAACTTGAGACAAATCC
* * *
51114309 TCAAGCATAAAGAGATTA-TTATACTTGAGACAAATC
1 TCAAACATAAAGAGATCACTGA-ACTTGAGACAAATC
51114345 ACATTGTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
36 2 0.07
37 28 0.93
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (37 bp):
TCAAACATAAAGAGATCACTGAACTTGAGACAAATCC
Found at i:51121781 original size:57 final size:57
Alignment explanation
Indices: 51121693--51121808 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
51121683 TGCTCACAAA
51121693 TGTGCAACAAGGAAGCAATCTATTGAAAATTGGCCAACCATGCTGCTGTGATATTTT
1 TGTGCAACAAGGAAGCAATCTATTGAAAATTGGCCAACCATGCTGCTGTGATATTTT
* *
51121750 TGTGCAGCAAGGAAGCAATCTATTGAAAATTGGCCAACCATGCTGCTGTGGTATTTT
1 TGTGCAACAAGGAAGCAATCTATTGAAAATTGGCCAACCATGCTGCTGTGATATTTT
51121807 TG
1 TG
51121809 GTTGAAGTGC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (57 bp):
TGTGCAACAAGGAAGCAATCTATTGAAAATTGGCCAACCATGCTGCTGTGATATTTT
Found at i:51122500 original size:29 final size:28
Alignment explanation
Indices: 51122457--51122516 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
51122447 TACCGGCTGT
*
51122457 ATGCACTCAACAAAATCATCAA-AGCAGC
1 ATGCACTCAACAAAAACAT-AACAGCAGC
*
51122485 ATGCACTTCAATAAAAACATAACAGCAGC
1 ATGCAC-TCAACAAAAACATAACAGCAGC
51122514 ATG
1 ATG
51122517 GTTGGCCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.47, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
ATGCACTCAACAAAAACATAACAGCAGC
Found at i:51152463 original size:20 final size:20
Alignment explanation
Indices: 51152440--51152568 Score: 73
Period size: 20 Copynumber: 6.5 Consensus size: 20
51152430 TACGTGCAGT
*
51152440 CAGGGGCACCAAAGTGCGAA
1 CAGGGGCACCAAAGTGCAAA
**
51152460 CAGGGGCACTGAAGTGCAAA
1 CAGGGGCACCAAAGTGCAAA
* * *
51152480 CAGGAGCA-TAGACGTGCAAA
1 CAGGGGCACCA-AAGTGCAAA
* * * * * *
51152500 TAGAGACACCGAAGTGTATA
1 CAGGGGCACCAAAGTGCAAA
* * **
51152520 TAGGGGCACCGAAGTGTGAA
1 CAGGGGCACCAAAGTGCAAA
*
51152540 CAGGGGCA-CAATTGTGCAAA
1 CAGGGGCACCAA-AGTGCAAA
51152560 CAGGGGCAC
1 CAGGGGCAC
51152569 TTCTTCATTT
Statistics
Matches: 81, Mismatches: 24, Indels: 7
0.72 0.21 0.06
Matches are distributed among these distances:
19 3 0.04
20 78 0.96
ACGTcount: A:0.35, C:0.20, G:0.33, T:0.12
Consensus pattern (20 bp):
CAGGGGCACCAAAGTGCAAA
Found at i:51154909 original size:43 final size:43
Alignment explanation
Indices: 51154848--51155097 Score: 308
Period size: 43 Copynumber: 5.8 Consensus size: 43
51154838 GTGCCGCTAA
* *
51154848 CTTTAGCGTCGCTCTTCCCACAAACGCCGCTAAAGACCAGAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGAAC
*
51154891 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGAAC
* * * *
51154934 CTTTAGCGGTGCTTTTCCTACAAATGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGAAC
*
51154977 CTTTAGCAGCGCTTTTCCCACAAACGCCGCTAAAGACCA-AGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGA-AC
** * * *
51155020 CTTTAGCGGCGCTTTTCCCTGAAGCGCCGCTAAAAAACA-AGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGA-AC
* * *
51155063 CTTTAGCGACGC-TTTCTCCAAAAACGCCACTAAAG
1 CTTTAGCGGCGCTTTTC-CCACAAACGCCGCTAAAG
51155098 GTCACGAAAA
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 4 0.02
43 178 0.98
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGAAC
Found at i:51155096 original size:129 final size:129
Alignment explanation
Indices: 51154848--51155097 Score: 344
Period size: 129 Copynumber: 1.9 Consensus size: 129
51154838 GTGCCGCTAA
51154848 CTTTAGCGTCGCTCTTCCCACAAACGCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACA
1 CTTTAGCGTCGCTCTTCCCACAAACGCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACA
* * * ** * * *
51154913 AACGCCGCTAAAGACCAGGACCTTTAGCGGTGCTTTTCCTACAAATGCCGCTAAAGACCAGGAC
66 AACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTTCCTAAAAACGCCACTAAAGACCAGGAC
* *
51154977 CTTTAGCAG-CGCTTTTCCCACAAACGCCGCTAAAGACCA-AGACCTTTAGCGGCGCTTTTCCCT
1 CTTTAGC-GTCGCTCTTCCCACAAACGCCGCTAAAGACCAGA-ACCTTTAGCGGCGCTTTTCCCA
* *
51155040 GAAGCGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTCTCC-AAAAACGCCACTAAAG
64 CAAACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTT-TCCTAAAAACGCCACTAAAG
51155098 GTCACGAAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
128 1 0.01
129 101 0.95
130 4 0.04
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (129 bp):
CTTTAGCGTCGCTCTTCCCACAAACGCCGCTAAAGACCAGAACCTTTAGCGGCGCTTTTCCCACA
AACGCCGCTAAAAAACAAGACCTTTAGCGACGCTTTTCCTAAAAACGCCACTAAAGACCAGGAC
Found at i:51156996 original size:23 final size:23
Alignment explanation
Indices: 51156937--51156997 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
51156927 ATAAAACATC
* *
51156937 TCAATTTCCAGCAAC-TAAATACT
1 TCAATTTGCAGC-ACTTAAACACT
51156960 TCAATTTGCAGCACTTAAACACT
1 TCAATTTGCAGCACTTAAACACT
51156983 TCAATTTGCAGCACT
1 TCAATTTGCAGCACT
51156998 ATCAAATTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 2 0.06
23 33 0.94
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.31
Consensus pattern (23 bp):
TCAATTTGCAGCACTTAAACACT
Found at i:51157416 original size:41 final size:39
Alignment explanation
Indices: 51157333--51157416 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
51157323 GCACAATACA
* **
51157333 ATATAAAAAGCATATATAAATATATGAATGTAGAGGCAT
1 ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
*
51157372 ATATAAAAAGCATATATAAATATATGTATGTCACAGAAACT
1 ATATAAAAAGCATATATAAATATATGAATGT-ACAGAAA-T
51157413 ATAT
1 ATAT
51157417 TCATTTATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 30 0.77
40 4 0.10
41 5 0.13
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (39 bp):
ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
Found at i:51161061 original size:21 final size:21
Alignment explanation
Indices: 51161035--51161078 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
51161025 AATGTCTAAC
51161035 CCTTAAACCCCCAAC-CTTAAA
1 CCTTAAA-CCCCAACACTTAAA
*
51161056 CCTTAAATCCCAACACTTAAA
1 CCTTAAACCCCAACACTTAAA
51161077 CC
1 CC
51161079 ATAATCCCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (21 bp):
CCTTAAACCCCAACACTTAAA
Found at i:51161084 original size:20 final size:20
Alignment explanation
Indices: 51161044--51161086 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51161034 CCCTTAAACC
*
51161044 CCCAACCTTAAACCTTAAAT
1 CCCAACCTTAAACCATAAAT
51161064 CCCAACACTTAAACCAT-AAT
1 CCCAAC-CTTAAACCATAAAT
51161084 CCC
1 CCC
51161087 TAATTCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (20 bp):
CCCAACCTTAAACCATAAAT
Found at i:51161108 original size:15 final size:15
Alignment explanation
Indices: 51161078--51161120 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
51161068 ACACTTAAAC
51161078 CATAATCCCT-AATT
1 CATAATCCCTAAATT
*
51161092 CATAATCCATAAATT
1 CATAATCCCTAAATT
*
51161107 CATACTCCCTAAAT
1 CATAATCCCTAAAT
51161121 CGGCCTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.33
Consensus pattern (15 bp):
CATAATCCCTAAATT
Found at i:51161279 original size:15 final size:15
Alignment explanation
Indices: 51161255--51161289 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
51161245 ACAAACTAAT
51161255 CCATAATCCCTAAAC
1 CCATAATCCCTAAAC
*
51161270 CCATACTCCCTAAA-
1 CCATAATCCCTAAAC
51161284 CCATAA
1 CCATAA
51161290 AATATGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (15 bp):
CCATAATCCCTAAAC
Found at i:51161704 original size:91 final size:91
Alignment explanation
Indices: 51161549--51161719 Score: 288
Period size: 91 Copynumber: 1.9 Consensus size: 91
51161539 GCGCTTTTCC
* * * *
51161549 AAAAATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
51161614 GCTTTCCCAAAAACGCCGCTAATCTT
66 GCTTTCCCAAAAACGCCGCTAATCTT
*
51161640 AAAAACGCCACTAAATCCCTGAAAGCTCAAAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
*
51161705 GCTTTCTCAAAAACG
66 GCTTTCCCAAAAACG
51161720 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
91 74 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (91 bp):
AAAAACGCCACTAAATCCCCGAAAGCTCAAAAAACAGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
GCTTTCCCAAAAACGCCGCTAATCTT
Found at i:51162349 original size:91 final size:91
Alignment explanation
Indices: 51162194--51162375 Score: 294
Period size: 91 Copynumber: 2.0 Consensus size: 91
51162184 AGCGGCGCTT
* * * *
51162194 TCTTATAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTG
1 TCTTAAAAACGCCACTAAATACCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTG
*
51162259 CGGCGCTTT-TCTAAAAACGTCGCTAA
66 CGGCGCTTTCTC-AAAAACGCCGCTAA
*
51162285 TCTTAAAAACGCCACTAAATACCTGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTG
1 TCTTAAAAACGCCACTAAATACCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTG
51162350 CGGCGCTTTCTCAAAAACGCCGCTAA
66 CGGCGCTTTCTCAAAAACGCCGCTAA
51162376 AGCCCTGAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 82 0.98
92 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (91 bp):
TCTTAAAAACGCCACTAAATACCCGAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTG
CGGCGCTTTCTCAAAAACGCCGCTAA
Found at i:51162659 original size:114 final size:114
Alignment explanation
Indices: 51162459--51162731 Score: 458
Period size: 114 Copynumber: 2.4 Consensus size: 114
51162449 NNNNNNNNNN
* *
51162459 TTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTTCTAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG
* *
51162524 CTTTCTTATAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCG
66 CTTTCTTAGAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCG
51162573 TTGGGCTTAGGTTTTTTTGCGGCGCTTTTCTAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTTCTAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG
*
51162638 CTTTCTTAGAAACGCCGCTAAATCCCCGAAAGCTCAGGAAACAGCGTCG
66 CTTTCTTAGAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCG
** *
51162687 TTGGGCTTAGGTTTTTTTGTAGCGC-TTTCTCAAAAATGCCGCTAA
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTTCT-AAAAACGCCGCTAA
51162732 TGCTTATTTT
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
113 5 0.03
114 145 0.97
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (114 bp):
TTGGGCTTAGGTTTTTTTGCGGCGCTTTTCTAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCG
CTTTCTTAGAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACAGCGTCG
Found at i:51182099 original size:17 final size:16
Alignment explanation
Indices: 51182073--51182107 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
51182063 TGTATCAAGC
*
51182073 CACTATCTTCTAGTGT
1 CACTATCTTCAAGTGT
51182089 CACTGATCTTCAAGTGT
1 CACT-ATCTTCAAGTGT
51182106 CA
1 CA
51182108 ATTTGGTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (16 bp):
CACTATCTTCAAGTGT
Found at i:51198216 original size:20 final size:23
Alignment explanation
Indices: 51198191--51198241 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
51198181 TATTGTGCAT
51198191 TATTATT-CTAAAA-TTAT-TAG
1 TATTATTACTAAAAGTTATGTAG
*
51198211 TATTATTACCTAAAAGTTATGTTG
1 TATTATTA-CTAAAAGTTATGTAG
51198235 TATTATT
1 TATTATT
51198242 TTTTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 7 0.27
22 6 0.23
23 4 0.15
24 9 0.35
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (23 bp):
TATTATTACTAAAAGTTATGTAG
Found at i:51198218 original size:23 final size:24
Alignment explanation
Indices: 51198189--51198241 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
51198179 GTTATTGTGC
*
51198189 ATTATTATTCTAAAA-TTAT-TAGT
1 ATTATTA-CCTAAAAGTTATGTAGT
*
51198212 ATTATTACCTAAAAGTTATGTTGT
1 ATTATTACCTAAAAGTTATGTAGT
51198236 ATTATT
1 ATTATT
51198242 TTTTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 6 0.23
23 11 0.42
24 9 0.35
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTATTACCTAAAAGTTATGTAGT
Found at i:51202706 original size:30 final size:30
Alignment explanation
Indices: 51202672--51202729 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
51202662 AAAGGAGAAA
51202672 AATCAAAGTCAAAAGCAAAAAA-GAAAAATT
1 AATCAAAGTCAAAA-CAAAAAATGAAAAATT
*
51202702 AATCAAAGTCAAAATAAAAAATGAAAAA
1 AATCAAAGTCAAAACAAAAAATGAAAAA
51202730 ATAAAAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.14
Consensus pattern (30 bp):
AATCAAAGTCAAAACAAAAAATGAAAAATT
Found at i:51202732 original size:15 final size:16
Alignment explanation
Indices: 51202712--51202755 Score: 63
Period size: 15 Copynumber: 2.7 Consensus size: 16
51202702 AATCAAAGTC
51202712 AAAATAAAAAATGA-A
1 AAAATAAAAAATGAGA
51202727 AAAATAAAAAATGATGA
1 AAAATAAAAAATGA-GA
51202744 AAAAGTAAAAAA
1 AAAA-TAAAAAA
51202756 CCCGCAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.54
17 5 0.19
18 7 0.27
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (16 bp):
AAAATAAAAAATGAGA
Found at i:51204074 original size:44 final size:44
Alignment explanation
Indices: 51204006--51204343 Score: 466
Period size: 44 Copynumber: 7.7 Consensus size: 44
51203996 GAAACTATAT
* * *
51204006 GTCCTATCTCCCTGAACAGTAGTGGAATAGGTAGAAGATTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
* * *
51204050 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
* * *
51204094 GTCCTAGATCCCTGAACAGCAGTGGAATAGG-CGAAAGATTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAG-AAGATTGTAA
* * * * * *
51204138 ATCCTAGCTCCCTGAACAACATTGGAATAGGTGGAAGACTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
*
51204182 GTCCTAGCTCCCTGACCAGCAGTGGAATTGGTAGAAGATTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
* *
51204226 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
51204270 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
* *
51204314 GTCCTAG--CCCTGACCAGCTGTGGAGTAGGT
1 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGT
51204344 TGAAAATTAC
Statistics
Matches: 261, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
42 21 0.08
43 1 0.00
44 238 0.91
45 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (44 bp):
GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAA
Found at i:51204164 original size:88 final size:88
Alignment explanation
Indices: 51204006--51204343 Score: 520
Period size: 88 Copynumber: 3.9 Consensus size: 88
51203996 GAAACTATAT
* *
51204006 GTCCTATCTCCCTGAACAGTAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
*
51204071 GTGGAATAGGTGGAAGACTGAAA
66 GTGGAATAGGTGGAAGACTGTAA
* * * * *
51204094 GTCCTAGATCCCTGAACAGCAGTGGAATAGG-CGAAAGATTGTAAATCCTAGCTCCCTGAACAAC
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTAG-AAGATTGTAAGTCCTAGCTCCCTGACCAGC
*
51204158 ATTGGAATAGGTGGAAGACTGTAA
65 AGTGGAATAGGTGGAAGACTGTAA
* *
51204182 GTCCTAGCTCCCTGACCAGCAGTGGAATTGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
51204247 GTGGAATAGGTGGAAGACTGTAA
66 GTGGAATAGGTGGAAGACTGTAA
* *
51204270 GTCCTAGCTCCCTGACCAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAG--CCCTGACCAGCT
1 GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
*
51204333 GTGGAGTAGGT
66 GTGGAATAGGT
51204344 TGAAAATTAC
Statistics
Matches: 228, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
86 21 0.09
87 1 0.00
88 205 0.90
89 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (88 bp):
GTCCTAGCTCCCTGAACAGCAGTGGAATAGGTAGAAGATTGTAAGTCCTAGCTCCCTGACCAGCA
GTGGAATAGGTGGAAGACTGTAA
Found at i:51206052 original size:24 final size:24
Alignment explanation
Indices: 51206015--51206084 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
51206005 CATATTTTTT
51206015 AAGTTAT-CGTGTATTATTATTCTAA
1 AAGTTATAC-TGTATTATTATT-TAA
*
51206040 AA-TTATTAC-GTATTATTACTTAA
1 AAGTTA-TACTGTATTATTATTTAA
*
51206063 AAGTTATGCTGTATTATTATTT
1 AAGTTATACTGTATTATTATTT
51206085 TATTATTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 7 0.18
24 27 0.71
25 3 0.08
26 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (24 bp):
AAGTTATACTGTATTATTATTTAA
Found at i:51215426 original size:14 final size:15
Alignment explanation
Indices: 51215400--51215430 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
51215390 AAATACAAAT
51215400 AAAACAACTAATAAA
1 AAAACAACTAATAAA
51215415 AAAACAAC-AATAAA
1 AAAACAACTAATAAA
51215429 AA
1 AA
51215431 TAAGACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAACAACTAATAAA
Found at i:51217824 original size:26 final size:26
Alignment explanation
Indices: 51217789--51217855 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
51217779 CATTCCGACC
51217789 CACAGCTCGTGTGAGCAGACCAATTT
1 CACAGCTCGTGTGAGCAGACCAATTT
* ** **
51217815 CACTGCTCGTGTGAGCATTCTTATTT
1 CACAGCTCGTGTGAGCAGACCAATTT
51217841 CACAGCTCGTGTGAG
1 CACAGCTCGTGTGAG
51217856 TAACCATGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCAATTT
Found at i:51219372 original size:13 final size:13
Alignment explanation
Indices: 51219354--51219407 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
51219344 CAGGTCTAAG
51219354 TAATCAGCTTAAT
1 TAATCAGCTTAAT
* *
51219367 TAATCAGTTCTAAG
1 TAATCAGCT-TAAT
*
51219381 TAAACAGCTTAAT
1 TAATCAGCTTAAT
*
51219394 TAATCAGCTGAAT
1 TAATCAGCTTAAT
51219407 T
1 T
51219408 GGAACATTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (13 bp):
TAATCAGCTTAAT
Found at i:51219381 original size:27 final size:27
Alignment explanation
Indices: 51219343--51219400 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
51219333 AATGAACTCT
*
51219343 TCAGGTCTAAGTAATCAGCTTAATTAA
1 TCAGGTCTAAGTAAACAGCTTAATTAA
*
51219370 TCAGTTCTAAGTAAACAGCTTAATTAA
1 TCAGGTCTAAGTAAACAGCTTAATTAA
51219397 TCAG
1 TCAG
51219401 CTGAATTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
TCAGGTCTAAGTAAACAGCTTAATTAA
Found at i:51221287 original size:15 final size:16
Alignment explanation
Indices: 51221267--51221296 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
51221257 AAAAAGTGAG
51221267 AGAAAAAGAA-ATGAA
1 AGAAAAAGAAGATGAA
51221282 AGAAAAAGAAGATGA
1 AGAAAAAGAAGATGA
51221297 GTGTGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (16 bp):
AGAAAAAGAAGATGAA
Found at i:51221305 original size:33 final size:34
Alignment explanation
Indices: 51221261--51221350 Score: 91
Period size: 36 Copynumber: 2.6 Consensus size: 34
51221251 AAATCGAAAA
51221261 AGTGAGA--GAAAAAGAAATGAAA-GAAAAAGA-
1 AGTGAGATTGAAAAAGAAATGAAACGAAAAAGAG
*
51221291 AGATGAG-TGTGAAAAAGAAAAGAAAACTGAAAAAGAG
1 AG-TGAGAT-TGAAAAAGAAATG-AAAC-GAAAAAGAG
51221328 AGTGAGATTGAAGAAAGAAATGA
1 AGTGAGATTGAA-AAAGAAATGA
51221351 GAGCGCAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
33 11 0.23
34 3 0.06
36 17 0.35
37 11 0.23
ACGTcount: A:0.60, C:0.01, G:0.28, T:0.11
Consensus pattern (34 bp):
AGTGAGATTGAAAAAGAAATGAAACGAAAAAGAG
Found at i:51228277 original size:17 final size:17
Alignment explanation
Indices: 51228255--51228288 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51228245 ACCACTATAA
51228255 GCTAAAAAGTCATCTGC
1 GCTAAAAAGTCATCTGC
51228272 GCTAAAAAGTCATCTGC
1 GCTAAAAAGTCATCTGC
51228289 AATAAACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (17 bp):
GCTAAAAAGTCATCTGC
Found at i:51228294 original size:17 final size:17
Alignment explanation
Indices: 51228257--51228294 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51228247 CACTATAAGC
**
51228257 TAAAAAGTCATCTGCGC
1 TAAAAAGTCATCTGCAA
51228274 TAAAAAGTCATCTGCAA
1 TAAAAAGTCATCTGCAA
51228291 TAAA
1 TAAA
51228295 CACATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (17 bp):
TAAAAAGTCATCTGCAA
Found at i:51230512 original size:16 final size:15
Alignment explanation
Indices: 51230486--51230515 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51230476 TCCATCAATT
51230486 ACCTTTTTCTATCCC
1 ACCTTTTTCTATCCC
51230501 ACCTTGTTTCTATCC
1 ACCTT-TTTCTATCC
51230516 TAAACCGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.37, G:0.03, T:0.47
Consensus pattern (15 bp):
ACCTTTTTCTATCCC
Found at i:51232381 original size:12 final size:12
Alignment explanation
Indices: 51232353--51232394 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
51232343 AAACTAAAGT
*
51232353 AAATAA-AAAAA
1 AAATAATAATAA
51232364 AGAATAATAATAA
1 A-AATAATAATAA
*
51232377 AAATAATAGTAA
1 AAATAATAATAA
51232389 AAATAA
1 AAATAA
51232395 CAACTAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 1 0.04
12 21 0.78
13 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:51232486 original size:25 final size:25
Alignment explanation
Indices: 51232442--51232512 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
51232432 AAATAGGACT
*
51232442 AATAAAACA-AAT-AAATATAATAAC
1 AATAAAAAATAATGAAA-ATAATAAC
*
51232466 AATAAAAAATAATGAAAATAATAAT
1 AATAAAAAATAATGAAAATAATAAC
*
51232491 AA-AATAAAATAATAGAACATAA
1 AATAA-AAAATAAT-GAAAATAA
51232513 AAATGAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.25
25 20 0.50
26 10 0.25
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (25 bp):
AATAAAAAATAATGAAAATAATAAC
Found at i:51232504 original size:16 final size:16
Alignment explanation
Indices: 51232450--51232502 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
51232440 CTAATAAAAC
51232450 AAAT-AAAT-ATAATA
1 AAATAAAATAATAATA
51232464 ACAATAAAA-AATAATGA
1 A-AATAAAATAATAAT-A
51232481 AAATAATAATAA-AATA
1 AAATAA-AATAATAATA
51232497 AAATAA
1 AAATAA
51232503 TAGAACATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
14 1 0.03
15 3 0.09
16 20 0.61
17 7 0.21
18 2 0.06
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (16 bp):
AAATAAAATAATAATA
Found at i:51233135 original size:13 final size:13
Alignment explanation
Indices: 51233099--51233137 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
51233089 CGTGTTGGGC
*
51233099 CACACGACCATGT
1 CACACGACCGTGT
*
51233112 TACACGACCGTGT
1 CACACGACCGTGT
*
51233125 CACACGCCCGTGT
1 CACACGACCGTGT
51233138 GGGGTTTTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.38, G:0.21, T:0.18
Consensus pattern (13 bp):
CACACGACCGTGT
Found at i:51233268 original size:45 final size:45
Alignment explanation
Indices: 51233205--51233309 Score: 131
Period size: 45 Copynumber: 2.4 Consensus size: 45
51233195 GGACACGATA
* * ** *
51233205 GTGTGTCCAGGTCGTGTGTGATATTTCTTTTCTTATCCTACGCCT
1 GTGTGTCCAGGCCGTGTGTGATATTCCTTCGCTTATCCCACGCCT
* *
51233250 GTGTGTCCAGGCCGTGTGTGATATTCCTTCGCTTCTCCCATGCCT
1 GTGTGTCCAGGCCGTGTGTGATATTCCTTCGCTTATCCCACGCCT
*
51233295 GTGTG-CAAGGCCGTG
1 GTGTGTCCAGGCCGTG
51233310 CAGGGCACAC
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 9 0.17
45 43 0.83
ACGTcount: A:0.10, C:0.26, G:0.27, T:0.37
Consensus pattern (45 bp):
GTGTGTCCAGGCCGTGTGTGATATTCCTTCGCTTATCCCACGCCT
Found at i:51237056 original size:30 final size:30
Alignment explanation
Indices: 51237013--51237069 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51237003 TAGGCATTTC
*
51237013 CACACGAGGTGGACACATGCCCGTGTGAGT
1 CACACGAGGTGGACACATGCCCATGTGAGT
51237043 CACAC-AGGCTGGACACATGCCCATGTG
1 CACACGAGG-TGGACACATGCCCATGTG
51237070 CTAGCCCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.16
Consensus pattern (30 bp):
CACACGAGGTGGACACATGCCCATGTGAGT
Found at i:51252185 original size:41 final size:42
Alignment explanation
Indices: 51252098--51252188 Score: 134
Period size: 41 Copynumber: 2.2 Consensus size: 42
51252088 AGATATTCTA
* *
51252098 GGAA-TATTTTATTTTATCTTTTAGTATTTACTTAGAATAAG
1 GGAATTATTTTATCTTATATTTTAGTATTTACTTAGAATAAG
51252139 GGAATTATTTT-TCTTATATTTTAGTAGTTTA-TTAGAATAAG
1 GGAATTATTTTATCTTATATTTTAGTA-TTTACTTAGAATAAG
51252180 GGAATTATT
1 GGAATTATT
51252189 ATCCTAATTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 36 0.78
42 10 0.22
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (42 bp):
GGAATTATTTTATCTTATATTTTAGTATTTACTTAGAATAAG
Found at i:51260044 original size:17 final size:16
Alignment explanation
Indices: 51260018--51260052 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
51260008 TGTATCAAGC
*
51260018 CACTATCTTCTAGTGT
1 CACTATCTTCAAGTGT
51260034 CACTGATCTTCAAGTGT
1 CACT-ATCTTCAAGTGT
51260051 CA
1 CA
51260053 ATTTGGTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (16 bp):
CACTATCTTCAAGTGT
Found at i:51265206 original size:48 final size:48
Alignment explanation
Indices: 51265154--51265262 Score: 191
Period size: 48 Copynumber: 2.3 Consensus size: 48
51265144 CTCTAGCACA
*
51265154 CCAAACATGTCCCGTTGAATGGAGCTTAGCTCACATTTTCTTATCTCT
1 CCAAACATGTCCCGTTGAATGGAGCTTAGCTCACATTTCCTTATCTCT
*
51265202 CCAAACATGTCCTGTTGAATGGAGCTTAGCTCACATTTCCTTATCTCT
1 CCAAACATGTCCCGTTGAATGGAGCTTAGCTCACATTTCCTTATCTCT
*
51265250 CCAACCATGTCCC
1 CCAAACATGTCCC
51265263 AGGGCCTCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (48 bp):
CCAAACATGTCCCGTTGAATGGAGCTTAGCTCACATTTCCTTATCTCT
Found at i:51265476 original size:25 final size:25
Alignment explanation
Indices: 51265442--51265492 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
51265432 CTTAGCATGT
*
51265442 ATGGCATGCTTACATATACTCTTTC
1 ATGGCATGCTTACAAATACTCTTTC
51265467 ATGGCATGCTTACAAATACTCTTTC
1 ATGGCATGCTTACAAATACTCTTTC
51265492 A
1 A
51265493 CACCAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (25 bp):
ATGGCATGCTTACAAATACTCTTTC
Found at i:51274845 original size:11 final size:11
Alignment explanation
Indices: 51274831--51274856 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51274821 ATTTGTCTAA
51274831 TTTTTGCTCAT
1 TTTTTGCTCAT
51274842 TTTTTGCTCAT
1 TTTTTGCTCAT
51274853 TTTT
1 TTTT
51274857 CTCCCAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTGCTCAT
Found at i:51275722 original size:15 final size:16
Alignment explanation
Indices: 51275702--51275733 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
51275692 CAAGTCAAAT
51275702 ATCAATAAAA-AGGAA
1 ATCAATAAAACAGGAA
51275717 ATCAATAAAACAGGAA
1 ATCAATAAAACAGGAA
51275733 A
1 A
51275734 AAGTCAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (16 bp):
ATCAATAAAACAGGAA
Found at i:51281561 original size:81 final size:82
Alignment explanation
Indices: 51281376--51281594 Score: 359
Period size: 81 Copynumber: 2.7 Consensus size: 82
51281366 TACTATACGT
* *
51281376 CTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCAGTGATC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGACAGTGATC
51281441 TGAATCAAGTTATAAAC
66 TGAATCAAGTTATAAAC
* *
51281458 CTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGT-ACTGTGATC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGACAGTGATC
*
51281522 TGAATCAGGTTATAAAC
66 TGAATCAAGTTATAAAC
* * *
51281539 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATCAGCCTAGCAGGCTAAGTG
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTG
51281595 CCGGTGAATC
Statistics
Matches: 127, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 74 0.58
82 53 0.42
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (82 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGACAGTGATC
TGAATCAAGTTATAAAC
Found at i:51281566 original size:122 final size:123
Alignment explanation
Indices: 51281376--51281601 Score: 373
Period size: 122 Copynumber: 1.8 Consensus size: 123
51281366 TACTATACGT
*
51281376 CTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCAGTGATC
1 CTAGCAGGCTAAGTACCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCAGTGATC
*
51281441 TGAATCAAGTTATAAACCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
66 TGAATCAAGCTATAAACCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
* *
51281499 CTAGCAGGCTAAGTACTG-TGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 CTAGCAGGCTAAGTACCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCAGTGATC
* * * *
51281563 TGAATCAGGCTATCAGCCTAGCAGGCTAAGTGCCGGTGA
66 TGAATCAAGCTATAAACCTAGCAGGCTAAGTGCCAGTGA
51281602 ATCTTTTAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
122 79 0.83
123 16 0.17
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (123 bp):
CTAGCAGGCTAAGTACCGATGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCAGTGATC
TGAATCAAGCTATAAACCTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
Found at i:51281598 original size:41 final size:41
Alignment explanation
Indices: 51281376--51281601 Score: 364
Period size: 41 Copynumber: 5.5 Consensus size: 41
51281366 TACTATACGT
*
51281376 CTAGCAGGCTAAGTGCCGATGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
51281417 CTAGCAGGCTAAGTGCCAGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
51281458 CTAGCAGGCTAAGTGCCAGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
51281499 CTAGCAGGCTAAGT-ACTGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
51281539 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATCAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
51281580 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
51281602 ATCTTTTAAA
Statistics
Matches: 173, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 38 0.22
41 135 0.78
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:51281690 original size:33 final size:33
Alignment explanation
Indices: 51281653--51281717 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
51281643 ATGATTTTAG
* *
51281653 TTATATGTAATGGATAAGTATATGAACATTTGT
1 TTATATGTAATGGATAAGCATATAAACATTTGT
* * *
51281686 TTATATGTATTTGATGAGCATATAAACATTTG
1 TTATATGTAATGGATAAGCATATAAACATTTG
51281718 GATCTTTGTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.43
Consensus pattern (33 bp):
TTATATGTAATGGATAAGCATATAAACATTTGT
Found at i:51289452 original size:24 final size:24
Alignment explanation
Indices: 51289408--51289453 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
51289398 TTACTAGGTG
*
51289408 TATAATTCTCTTATTCCCTTTCTC
1 TATAATTCTCTTATTCACTTTCTC
*
51289432 TATAATATTTCTTA-TCACTTTC
1 TATAAT-TCTCTTATTCACTTTC
51289454 ACTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (24 bp):
TATAATTCTCTTATTCACTTTCTC
Found at i:51290399 original size:23 final size:23
Alignment explanation
Indices: 51290373--51290417 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
51290363 TTCCTTACTA
51290373 TAGTAATTTTCAGGG-TATTACAG
1 TAGTAATTTTC-GGGATATTACAG
51290396 TAGTAATTTTCGGGATATTACA
1 TAGTAATTTTCGGGATATTACA
51290418 AATACAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAG
Found at i:51293520 original size:20 final size:19
Alignment explanation
Indices: 51293441--51293553 Score: 64
Period size: 20 Copynumber: 5.7 Consensus size: 19
51293431 TATATATATA
* *
51293441 GGGCACCAAAGTGCGAACAG
1 GGGCACCGAAGTG-GAATAG
* * *
51293461 GAGCACAGACGTGGAAATAG
1 GGGCACCGAAGTGG-AATAG
* * *
51293481 AGACACCGAAGTGTATATAG
1 GGGCACCGAAGTGGA-ATAG
51293501 GGGCACCGAAGTGCGAATAG
1 GGGCACCGAAGTG-GAATAG
** *
51293521 GGGCATAGTAGTGGCAATAG
1 GGGCACCGAAGTGG-AATAG
* *
51293541 AGACACCGAAGTG
1 GGGCACCGAAGTG
51293554 TATACATTAG
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
19 3 0.04
20 63 0.94
21 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.35, T:0.12
Consensus pattern (19 bp):
GGGCACCGAAGTGGAATAG
Found at i:51293540 original size:60 final size:60
Alignment explanation
Indices: 51293320--51293557 Score: 280
Period size: 60 Copynumber: 4.0 Consensus size: 60
51293310 GTGCAGTCAA
* * * * * **
51293320 GGGCACCAAAGTGCGAATAGGGACACAGATGTGCAAACAGGGACACTAAAGTGTATATAG
1 GGGCACCAAAGTGCGAATAGGGGCACAGACGTGGAAATAGAGACACCGAAGTGTATATAG
* * * ** * *
51293380 GGGCACCAAAGTGCGAACAGGAGCATAGACGTGGAAATAGAGACGTCGAAGTATATATATA
1 GGGCACCAAAGTGCGAATAGGGGCACAGACGTGGAAATAGAGACACCGAAGTGTATATA-G
* *
51293441 GGGCACCAAAGTGCGAACAGGAGCACAGACGTGGAAATAGAGACACCGAAGTGTATATAG
1 GGGCACCAAAGTGCGAATAGGGGCACAGACGTGGAAATAGAGACACCGAAGTGTATATAG
* * *
51293501 GGGCACCGAAGTGCGAATAGGGGCATAGTA-GTGGCAATAGAGACACCGAAGTGTATA
1 GGGCACCAAAGTGCGAATAGGGGCACAG-ACGTGGAAATAGAGACACCGAAGTGTATA
51293558 CATTAGCACT
Statistics
Matches: 152, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
60 96 0.63
61 56 0.37
ACGTcount: A:0.37, C:0.16, G:0.32, T:0.15
Consensus pattern (60 bp):
GGGCACCAAAGTGCGAATAGGGGCACAGACGTGGAAATAGAGACACCGAAGTGTATATAG
Found at i:51293540 original size:121 final size:121
Alignment explanation
Indices: 51293319--51293544 Score: 321
Period size: 121 Copynumber: 1.9 Consensus size: 121
51293309 CGTGCAGTCA
* * * *
51293319 AGGGCACCAAAGTGCGAATAGGGACACAGATGTGCAAACAGGGACACTAAAGTGTATATAGGGGC
1 AGGGCACCAAAGTGCGAACAGGGACACAGACGTGCAAACAGAGACACCAAAGTGTATATAGGGGC
51293384 ACCAAAGTGCGAACAGGAGCATAGACGTGGAAATAGAGACGTCGAAGTATATATAT
66 ACCAAAGTGCGAACAGGAGCATAGACGTGGAAATAGAGACGTCGAAGTATATATAT
* * *
51293440 AGGGCACCAAAGTGCGAACA-GGAGCACAGACGTGGAAATAGAGACACCGAAGTGTATATAGGGG
1 AGGGCACCAAAGTGCGAACAGGGA-CACAGACGTGCAAACAGAGACACCAAAGTGTATATAGGGG
* * * *
51293504 CACCGAAGTGCGAATAGGGGCATAGTA-GTGGCAATAGAGAC
65 CACCAAAGTGCGAACAGGAGCATAG-ACGTGGAAATAGAGAC
51293545 ACCGAAGTGT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
120 3 0.03
121 88 0.96
122 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.32, T:0.14
Consensus pattern (121 bp):
AGGGCACCAAAGTGCGAACAGGGACACAGACGTGCAAACAGAGACACCAAAGTGTATATAGGGGC
ACCAAAGTGCGAACAGGAGCATAGACGTGGAAATAGAGACGTCGAAGTATATATAT
Found at i:51293580 original size:60 final size:60
Alignment explanation
Indices: 51293368--51293585 Score: 181
Period size: 60 Copynumber: 3.6 Consensus size: 60
51293358 AGGGACACTA
* * * * * * **
51293368 AAGTGTATATAGGGGCACCAAAGTGCGAACAGGAGCATAG-ACGTGGAAATAGAGACGTCG
1 AAGTGTATACAGGAGCACCGAAGTGCAAATAGGGGCATAGTA-GTGGAAATAGAGACACCG
* * * * * * *
51293428 AAGTATATATATAGG-GCACCAAAGTGCGAACAGGAGCACAG-ACGTGGAAATAGAGACACCG
1 AAG--TGTATACAGGAGCACCGAAGTGCAAATAGGGGCATAGTA-GTGGAAATAGAGACACCG
* * * *
51293489 AAGTGTATATAGGGGCACCGAAGTGCGAATAGGGGCATAGTAGTGGCAATAGAGACACCG
1 AAGTGTATACAGGAGCACCGAAGTGCAAATAGGGGCATAGTAGTGGAAATAGAGACACCG
** *
51293549 AAGTGTATACATTAGCACTGAAGTGCAAATAGGGGCA
1 AAGTGTATACAGGAGCACCGAAGTGCAAATAGGGGCA
51293586 CAGTTATGCA
Statistics
Matches: 138, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
59 9 0.07
60 73 0.53
61 47 0.34
62 9 0.07
ACGTcount: A:0.37, C:0.16, G:0.31, T:0.16
Consensus pattern (60 bp):
AAGTGTATACAGGAGCACCGAAGTGCAAATAGGGGCATAGTAGTGGAAATAGAGACACCG
Found at i:51299253 original size:61 final size:60
Alignment explanation
Indices: 51299150--51299303 Score: 188
Period size: 61 Copynumber: 2.5 Consensus size: 60
51299140 CACCAAAGTA
* * * *
51299150 TATACAAGGGCACTAAAGTGCAAATAGGAGCACAGA-CGTGCAAATAGAGACACC-AAATCG
1 TATACAAGGCCACTAAAGTGCAAACAGGGGCACA-ATTGTGCAAATAGAGACACCGAAAT-G
* * *
51299210 TATACAGGGCGCA-TCAAAGTGCGAACAGGGGCACAATTGTGCAAATAGAGACACCGAAGTG
1 TATACAAGGC-CACT-AAAGTGCAAACAGGGGCACAATTGTGCAAATAGAGACACCGAAATG
51299271 TATACAAGGCCACTAAAGTGCAAACAGGGGCAC
1 TATACAAGGCCACTAAAGTGCAAACAGGGGCAC
51299304 TTCTTTATTT
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
60 30 0.38
61 47 0.59
62 3 0.04
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.14
Consensus pattern (60 bp):
TATACAAGGCCACTAAAGTGCAAACAGGGGCACAATTGTGCAAATAGAGACACCGAAATG
Found at i:51325065 original size:17 final size:17
Alignment explanation
Indices: 51325033--51325067 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
51325023 GTCTTCTCCT
*
51325033 TTTTTGTTCACGTTTGG
1 TTTTTGTTCACCTTTGG
*
51325050 TTTTTGTTCCCCTTTGG
1 TTTTTGTTCACCTTTGG
51325067 T
1 T
51325068 CGAAACTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.17, G:0.20, T:0.60
Consensus pattern (17 bp):
TTTTTGTTCACCTTTGG
Found at i:51328488 original size:23 final size:23
Alignment explanation
Indices: 51328460--51328510 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
51328450 CTGGACTGCA
51328460 GCCATGTACTGATTGTGGTAGAC
1 GCCATGTACTGATTGTGGTAGAC
51328483 GCCATGTACTGATTGTGGTAGAC
1 GCCATGTACTGATTGTGGTAGAC
51328506 GCCAT
1 GCCAT
51328511 CAGGGCGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (23 bp):
GCCATGTACTGATTGTGGTAGAC
Found at i:51331568 original size:28 final size:28
Alignment explanation
Indices: 51331537--51331590 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
51331527 TGGGTGGGCC
*
51331537 ACACGGGCGTATGGGCCCACACGGGCTT
1 ACACAGGCGTATGGGCCCACACGGGCTT
* *
51331565 ACACAGGCGTGTGGGCCTACACGGGC
1 ACACAGGCGTATGGGCCCACACGGGC
51331591 AGATTACATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.19, C:0.31, G:0.37, T:0.13
Consensus pattern (28 bp):
ACACAGGCGTATGGGCCCACACGGGCTT
Found at i:51333559 original size:19 final size:19
Alignment explanation
Indices: 51333535--51333571 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51333525 TATTTTAAAG
*
51333535 TTATTTTGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
51333554 TTATTTAGGTAGATAAAT
1 TTATTTAGGTAGATAAAT
51333572 ATTAGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:51333658 original size:41 final size:42
Alignment explanation
Indices: 51333600--51333692 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 42
51333590 AGATATTCTA
* *
51333600 GGAA-TATTTTATTTTATCTTTTAATAGTTTATTATAATAAG
1 GGAATTATTTTATATTATCTTTTAATAGTTTATTAGAATAAG
*
51333641 GGAATTATTTT-TATTATCTTTTAGTAGTTTATTAGAATAAG
1 GGAATTATTTTATATTATCTTTTAATAGTTTATTAGAATAAG
51333682 GGAATTATTTT
1 GGAATTATTTT
51333693 CCCAATTAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
41 42 0.88
42 6 0.12
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (42 bp):
GGAATTATTTTATATTATCTTTTAATAGTTTATTAGAATAAG
Found at i:51337714 original size:17 final size:17
Alignment explanation
Indices: 51337692--51337727 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
51337682 GAACACCTCC
51337692 ATTAAATGTGAAATAAA
1 ATTAAATGTGAAATAAA
*
51337709 ATTAAATGTGAGATAAA
1 ATTAAATGTGAAATAAA
51337726 AT
1 AT
51337728 CTGAAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.31
Consensus pattern (17 bp):
ATTAAATGTGAAATAAA
Found at i:51349418 original size:827 final size:827
Alignment explanation
Indices: 51347818--51349472 Score: 3247
Period size: 827 Copynumber: 2.0 Consensus size: 827
51347808 AATTTGCTGA
51347818 AATCCTTTATGCAAGGATGGTGATAGGCGTGAGTGCTAAGAGAGTTGAGAGAATTGAGAGAGGAG
1 AATCCTTTATGCAAGGATGGTGATAGGCGTGAGTGCTAAGAGAGTTGAGAGAATTGAGAGAGGAG
51347883 AGAATGATGAGAAGTGAGGGATGATGGATGAATGAATGAGAGGGTCTTTTTTATAGGTGAGGAGA
66 AGAATGATGAGAAGTGAGGGATGATGGATGAATGAATGAGAGGGTCTTTTTTATAGGTGAGGAGA
51347948 GGGGGATAGTTTACTAAAACTAGGGGTGTTCATCCTTTGAAAAATCTCCCATGGTTGGCCGGCCA
131 GGGGGATAGTTTACTAAAACTAGGGGTGTTCATCCTTTGAAAAATCTCCCATGGTTGGCCGGCCA
51348013 TACATCAAGCAAATCAAGCTAATTTTTCCTTAATTTTTGGTCAGTTTGGATGCCACAACAATTCA
196 TACATCAAGCAAATCAAGCTAATTTTTCCTTAATTTTTGGTCAGTTTGGATGCCACAACAATTCA
51348078 GGACTGAGACTCGATCAAGTGCAAATCTTTAGGTAAATCTTTAATTTCTTCAATTCTTCGAGGAC
261 GGACTGAGACTCGATCAAGTGCAAATCTTTAGGTAAATCTTTAATTTCTTCAATTCTTCGAGGAC
51348143 CTTATATAATTAAACCAAAAGTTGGTTTATAATCAGCCATGTGTAGCTGAAAATTGGGTTGACTT
326 CTTATATAATTAAACCAAAAGTTGGTTTATAATCAGCCATGTGTAGCTGAAAATTGGGTTGACTT
51348208 GGTCCCCACTTAGACGGTTTTGCAATTTGAAGAAAATCCTTAAACCTGTCAAAGATAGCAAATAG
391 GGTCCCCACTTAGACGGTTTTGCAATTTGAAGAAAATCCTTAAACCTGTCAAAGATAGCAAATAG
51348273 TTTAGAGGACCAATAAATTAATTTAACAACTTTAATTAATTAATTTACTTAATTAAACCCAATTT
456 TTTAGAGGACCAATAAATTAATTTAACAACTTTAATTAATTAATTTACTTAATTAAACCCAATTT
51348338 TTATTAATGAAATATTTAAAATGAATTATTAAAATATAACATTATATTTTATTATTTAATTTAAT
521 TTATTAATGAAATATTTAAAATGAATTATTAAAATATAACATTATATTTTATTATTTAATTTAAT
51348403 AATGCATGGCCCACGTCATAGCTTAAAAAATATAATATGCTTCAATTAATATAAAATAAGCCATT
586 AATGCATGGCCCACGTCATAGCTTAAAAAATATAATATGCTTCAATTAATATAAAATAAGCCATT
51348468 ATATGCATGAAAACAATACAATAAAACATAAAATCACATTTTAATAATTTCTATGTCATAATTTC
651 ATATGCATGAAAACAATACAATAAAACATAAAATCACATTTTAATAATTTCTATGTCATAATTTC
*
51348533 ATATTTTCACATATTTCATTAATTTAATAAACAATTACTTGGTTTTAGCAACAATTTTAAGTAAA
716 ATATTTTCACATATTTCATTAATTTAATAAACAATTACTTGGTTTTAACAACAATTTTAAGTAAA
*
51348598 AAGGTGATGAATTATATAGGAAAAATCCTATATATTTTTCCGTTTAC
781 AAGGCGATGAATTATATAGGAAAAATCCTATATATTTTTCCGTTTAC
51348645 AATCCTTTATGCAAGGATGGTGATAGGCGTGAGTGCTAAGAGAGTTGAGAGAATTGAGAGAGGAG
1 AATCCTTTATGCAAGGATGGTGATAGGCGTGAGTGCTAAGAGAGTTGAGAGAATTGAGAGAGGAG
51348710 AGAATGATGAGAAGTGAGGGATGATGGATGAATGAATGAGAGGGTCTTTTTTATAGGTGAGGAGA
66 AGAATGATGAGAAGTGAGGGATGATGGATGAATGAATGAGAGGGTCTTTTTTATAGGTGAGGAGA
51348775 GGGGGATAGTTTACTAAAACTAGGGGTGTTCATCCTTTGAAAAATCTCCCATGGTTGGCCGGCCA
131 GGGGGATAGTTTACTAAAACTAGGGGTGTTCATCCTTTGAAAAATCTCCCATGGTTGGCCGGCCA
51348840 TACATCAAGCAAATCAAGCTAATTTTTCCTTAATTTTTGGTCAGTTTGGATGCCACAACAATTCA
196 TACATCAAGCAAATCAAGCTAATTTTTCCTTAATTTTTGGTCAGTTTGGATGCCACAACAATTCA
51348905 GGACTGAGACTCGATCAAGTGCAAATCTTTAGGTAAATCTTTAATTTCTTCAATTCTTCGAGGAC
261 GGACTGAGACTCGATCAAGTGCAAATCTTTAGGTAAATCTTTAATTTCTTCAATTCTTCGAGGAC
51348970 CTTATATAATTAAACCAAAAGTTGGTTTATAATCAGCCATGTGTAGCTGAAAATTGGGTTGACTT
326 CTTATATAATTAAACCAAAAGTTGGTTTATAATCAGCCATGTGTAGCTGAAAATTGGGTTGACTT
51349035 GGTCCCCACTTAGACGGTTTTGCAATTTGAAGAAAATCCTTAAACCTGTCAAAGATAGCAAATAG
391 GGTCCCCACTTAGACGGTTTTGCAATTTGAAGAAAATCCTTAAACCTGTCAAAGATAGCAAATAG
51349100 TTTAGAGGACCAATAAATTAATTTAACAACTTTAATTAATTAATTTACTTAATTAAACCCAATTT
456 TTTAGAGGACCAATAAATTAATTTAACAACTTTAATTAATTAATTTACTTAATTAAACCCAATTT
51349165 TTATTAATGAAATATTTAAAATGAATTATTAAAATATAACATTATATTTTATTATTTAATTTAAT
521 TTATTAATGAAATATTTAAAATGAATTATTAAAATATAACATTATATTTTATTATTTAATTTAAT
*
51349230 CATGCATGGCCCACGTCATAGCTTAAAAAATATAATATGCTTCAATTAATATAAAATAAGCCATT
586 AATGCATGGCCCACGTCATAGCTTAAAAAATATAATATGCTTCAATTAATATAAAATAAGCCATT
51349295 ATATGCATGAAAACAATACAATAAAACATAAAATCACATTTTAATAATTTCTATGTCATAATTTC
651 ATATGCATGAAAACAATACAATAAAACATAAAATCACATTTTAATAATTTCTATGTCATAATTTC
* * *
51349360 ATATTTTCACATATTTCATTAATTTATTAAATAATTACTTGGTTTTAACAATAATTTTAAGTAAA
716 ATATTTTCACATATTTCATTAATTTAATAAACAATTACTTGGTTTTAACAACAATTTTAAGTAAA
*
51349425 AAGGCGATGAATTATATAGGAAAAATCCTATATATTTTTCTGTTTAC
781 AAGGCGATGAATTATATAGGAAAAATCCTATATATTTTTCCGTTTAC
51349472 A
1 A
51349473 GTATCCAAAT
Statistics
Matches: 821, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
827 821 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (827 bp):
AATCCTTTATGCAAGGATGGTGATAGGCGTGAGTGCTAAGAGAGTTGAGAGAATTGAGAGAGGAG
AGAATGATGAGAAGTGAGGGATGATGGATGAATGAATGAGAGGGTCTTTTTTATAGGTGAGGAGA
GGGGGATAGTTTACTAAAACTAGGGGTGTTCATCCTTTGAAAAATCTCCCATGGTTGGCCGGCCA
TACATCAAGCAAATCAAGCTAATTTTTCCTTAATTTTTGGTCAGTTTGGATGCCACAACAATTCA
GGACTGAGACTCGATCAAGTGCAAATCTTTAGGTAAATCTTTAATTTCTTCAATTCTTCGAGGAC
CTTATATAATTAAACCAAAAGTTGGTTTATAATCAGCCATGTGTAGCTGAAAATTGGGTTGACTT
GGTCCCCACTTAGACGGTTTTGCAATTTGAAGAAAATCCTTAAACCTGTCAAAGATAGCAAATAG
TTTAGAGGACCAATAAATTAATTTAACAACTTTAATTAATTAATTTACTTAATTAAACCCAATTT
TTATTAATGAAATATTTAAAATGAATTATTAAAATATAACATTATATTTTATTATTTAATTTAAT
AATGCATGGCCCACGTCATAGCTTAAAAAATATAATATGCTTCAATTAATATAAAATAAGCCATT
ATATGCATGAAAACAATACAATAAAACATAAAATCACATTTTAATAATTTCTATGTCATAATTTC
ATATTTTCACATATTTCATTAATTTAATAAACAATTACTTGGTTTTAACAACAATTTTAAGTAAA
AAGGCGATGAATTATATAGGAAAAATCCTATATATTTTTCCGTTTAC
Found at i:51350328 original size:41 final size:41
Alignment explanation
Indices: 51350283--51350376 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
51350273 AAGATATTCT
* *
51350283 AGGAA-TATTTTATTTTATCTTTTAGTAGTTTATTAGAATAA
1 AGGAATTATTTT-TCTTATCTTTTAGTAGTTTAATAGAATAA
51350324 AGGAATTATTTTTCTTATCTTTTAGTAGTTTAATAGAATAA
1 AGGAATTATTTTTCTTATCTTTTAGTAGTTTAATAGAATAA
*
51350365 GGGAATTATTTT
1 AGGAATTATTTT
51350377 CCCAATTAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
41 43 0.88
42 6 0.12
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (41 bp):
AGGAATTATTTTTCTTATCTTTTAGTAGTTTAATAGAATAA
Found at i:51358175 original size:19 final size:18
Alignment explanation
Indices: 51358153--51358192 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
51358143 TGAATAAAAC
51358153 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
51358172 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
51358190 TTA
1 TTA
51358193 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:51366861 original size:28 final size:25
Alignment explanation
Indices: 51366819--51366913 Score: 68
Period size: 28 Copynumber: 3.6 Consensus size: 25
51366809 ATATTAATTG
51366819 AAAAAAATATAATATGTACATATATAT
1 AAAAAAATATAATA--TACATATATAT
*
51366846 AAAAAAATAATTATATACATATATAGATT
1 AAAAAAAT-ATAATATACATATAT--A-T
**
51366875 ATAAAAACGATAAT-TACATATATA-
1 A-AAAAAATATAATATACATATATAT
*
51366899 CAAAAAATGATAATA
1 AAAAAAAT-ATAATA
51366914 ATTAAATTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
23 5 0.09
24 5 0.09
26 10 0.19
27 8 0.15
28 15 0.28
29 6 0.11
30 5 0.09
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (25 bp):
AAAAAAATATAATATACATATATAT
Found at i:51366864 original size:26 final size:27
Alignment explanation
Indices: 51366819--51366870 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
51366809 ATATTAATTG
*
51366819 AAAAAAATATAATATGTACATATATAT
1 AAAAAAATATAATATATACATATATAT
*
51366846 AAAAAAATA-ATTATATACATATATA
1 AAAAAAATATAATATATACATATATA
51366871 GATTATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAAAAATATAATATATACATATATAT
Found at i:51371953 original size:17 final size:16
Alignment explanation
Indices: 51371927--51371961 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
51371917 TGTATCAAGC
51371927 CACTATCTTCAAGTGT
1 CACTATCTTCAAGTGT
51371943 CACTGATCTTCAAGTGT
1 CACT-ATCTTCAAGTGT
51371960 CA
1 CA
51371962 ATTTGGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (16 bp):
CACTATCTTCAAGTGT
Found at i:51381879 original size:27 final size:27
Alignment explanation
Indices: 51381810--51381908 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 27
51381800 GAGATTTTAC
* * * *
51381810 CCTTACAAGGGTATTACGGTAATCCTA
1 CCTTACAGGGGTATTTCAGTAATTCTA
*
51381837 CCTTACAGAGGTATTTCAGTAATTCTA
1 CCTTACAGGGGTATTTCAGTAATTCTA
** *
51381864 CCTTACAGGGGTATTTTGGTGATTCTA
1 CCTTACAGGGGTATTTCAGTAATTCTA
* *
51381891 CCCTATAGGGGTATTTCA
1 CCTTACAGGGGTATTTCA
51381909 CAAATCAGAG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (27 bp):
CCTTACAGGGGTATTTCAGTAATTCTA
Found at i:51381937 original size:26 final size:26
Alignment explanation
Indices: 51381908--51381984 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 26
51381898 GGGGTATTTC
51381908 ACAAATCAGAGGTA-TTTGGTAATCTA
1 ACAAATC-GAGGTATTTTGGTAATCTA
* *
51381934 ACAAATTGAGGGTATTTTGGTAATTTA
1 ACAAATCGA-GGTATTTTGGTAATCTA
51381961 ACAAATCGAAGGTATTTTGGTAAT
1 ACAAATCG-AGGTATTTTGGTAAT
51381985 TTTATAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.04
26 10 0.22
27 32 0.71
28 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (26 bp):
ACAAATCGAGGTATTTTGGTAATCTA
Found at i:51381962 original size:27 final size:27
Alignment explanation
Indices: 51381918--51382221 Score: 294
Period size: 27 Copynumber: 11.3 Consensus size: 27
51381908 ACAAATCAGA
* *
51381918 GGTA-TTTGGTAATCTAACAAATTGAG
1 GGTATTTTGGTAATTTTACAAATTGAG
* * *
51381944 GGTATTTTGGTAATTTAACAAATCGAA
1 GGTATTTTGGTAATTTTACAAATTGAG
*
51381971 GGTATTTTGGTAATTTTATAAATT-AG
1 GGTATTTTGGTAATTTTACAAATTGAG
*
51381997 GGTTATTTTAGTAATTTTACAAATTGAGG
1 GG-TATTTTGGTAATTTTACAAATTGA-G
* * *
51382026 GGTATTTTGATAATTTTGCAAATTGGG
1 GGTATTTTGGTAATTTTACAAATTGAG
* *
51382053 GGTACTTTGGTAATTTCACAAATTGAG
1 GGTATTTTGGTAATTTTACAAATTGAG
** *
51382080 GGTATTTCAGTAATTTTACAAATCG-G
1 GGTATTTTGGTAATTTTACAAATTGAG
** *
51382106 GTGTATTTTGGTAATTTCCCAAATTGAA
1 G-GTATTTTGGTAATTTTACAAATTGAG
* *
51382134 GGTATTTTGATAATTTTGCAAATT-AGG
1 GGTATTTTGGTAATTTTACAAATTGA-G
* *
51382161 GGTACTTTGGTAATTTTGCAAATT-AGG
1 GGTATTTTGGTAATTTTACAAATTGA-G
* * * *
51382188 GGTACTTCGGTAAGTTTACAAGTTGAG
1 GGTATTTTGGTAATTTTACAAATTGAG
51382215 GGTATTT
1 GGTATTT
51382222 CAATAATTTT
Statistics
Matches: 230, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
26 10 0.04
27 194 0.84
28 23 0.10
29 3 0.01
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATTGAG
Found at i:51382074 original size:109 final size:108
Alignment explanation
Indices: 51381935--51382176 Score: 333
Period size: 109 Copynumber: 2.2 Consensus size: 108
51381925 GGTAATCTAA
* * ** *
51381935 CAAATTGAGGGTATTTTGGTAATTTAACAAATCGAAGGTATTTTGGTAATTTTATAAATTAGGGT
1 CAAATTGGGGGTACTTTGGTAATTTAACAAATCGAAGGTATTTCAGTAATTTTACAAA-TAGGGT
* *
51382000 -TATTTTAGTAATTTTACAAATTGAGGGGTATTTTGATAATTTTG
65 GTATTTTAGTAATTTCACAAATTGA-AGGTATTTTGATAATTTTG
* * * *
51382044 CAAATTGGGGGTACTTTGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGGGTG
1 CAAATTGGGGGTACTTTGGTAATTTAACAAATCGAAGGTATTTCAGTAATTTTACAAATAGGGTG
* *
51382109 TATTTTGGTAATTTCCCAAATTGAAGGTATTTTGATAATTTTG
66 TATTTTAGTAATTTCACAAATTGAAGGTATTTTGATAATTTTG
*
51382152 CAAATTAGGGGTACTTTGGTAATTT
1 CAAATTGGGGGTACTTTGGTAATTT
51382177 TGCAAATTAG
Statistics
Matches: 118, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
108 47 0.40
109 71 0.60
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (108 bp):
CAAATTGGGGGTACTTTGGTAATTTAACAAATCGAAGGTATTTCAGTAATTTTACAAATAGGGTG
TATTTTAGTAATTTCACAAATTGAAGGTATTTTGATAATTTTG
Found at i:51382156 original size:81 final size:78
Alignment explanation
Indices: 51381903--51382258 Score: 282
Period size: 81 Copynumber: 4.4 Consensus size: 78
51381893 CTATAGGGGT
* * * * * *
51381903 ATTTCACAAATCAGAGGTA-TTTGGTAATCTAACAAATTGAGGGTATTTTGGTAATTTAACAAAT
1 ATTTTACAAATTAG-GGTATTTTAGTAATTTTACAAATAG-GGGTATTTTGGTAATTT-ACAAAT
* *
51381967 CGAAGGTATTTTGGTA
63 TGAAGGTATTTTGATA
* * *
51381983 ATTTTATAAATTAGGGTTATTTTAGTAATTTTACAAATTGAGGGGTATTTTGATAATTTTGCAAA
1 ATTTTACAAATTAGGG-TATTTTAGTAATTTTACAAA-T-AGGGGTATTTTGGTAA-TTTACAAA
** * *
51382048 TTGGGGGTACTTTGGTA
62 TTGAAGGTATTTTGATA
* * * *
51382065 ATTTCACAAATTGAGGGTATTTCAGTAATTTTACAAATCGGGTGTATTTTGGTAATTTCCCAAAT
1 ATTTTACAAATT-AGGGTATTTTAGTAATTTTACAAATAGGG-GTATTTTGGTAATTT-ACAAAT
51382130 TGAAGGTATTTTGATA
63 TGAAGGTATTTTGATA
* * * * * * *
51382146 ATTTTGCAAATTAGGGGTACTTTGGTAATTTTGCAAATTAGGGGTACTTCGGTAAGTTTACAAGT
1 ATTTTACAAATTA-GGGTATTTTAGTAATTTTACAAA-TAGGGGTATTTTGGTAA-TTTACAAAT
* **
51382211 TGAGGGTATTTCAATA
63 TGAAGGTATTTTGATA
** **
51382227 ATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 ATTTTACAAA-TTAGGGTATTTTAGTAATTTT
51382259 GTAAACCAAA
Statistics
Matches: 222, Mismatches: 42, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
79 2 0.01
80 20 0.09
81 124 0.56
82 68 0.31
83 8 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (78 bp):
ATTTTACAAATTAGGGTATTTTAGTAATTTTACAAATAGGGGTATTTTGGTAATTTACAAATTGA
AGGTATTTTGATA
Found at i:51382243 original size:27 final size:27
Alignment explanation
Indices: 51382213--51382267 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
51382203 TTACAAGTTG
51382213 AGGGTATTTCAATAATTTTGTAAACCA
1 AGGGTATTTCAATAATTTTGTAAACCA
* *
51382240 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTCAATAATTTTGTAAACCA
51382267 A
1 A
51382268 ATATTCTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTGTAAACCA
Found at i:51386306 original size:30 final size:32
Alignment explanation
Indices: 51386248--51386327 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
51386238 ATATATATTC
*
51386248 GGCACAAAGCCTTCAGTAACAATATAATA-ATT
1 GGCACAAAGCCATCAGTAAC-ATATAATACATT
51386280 GGCACAAAGCCAT-AGGTAAC-TATAATACGATT
1 GGCACAAAGCCATCA-GTAACATATAATAC-ATT
* *
51386312 GGCACATAGACATCAG
1 GGCACAAAGCCATCAG
51386328 CGACGGTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 7 0.17
31 1 0.02
32 32 0.78
33 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (32 bp):
GGCACAAAGCCATCAGTAACATATAATACATT
Found at i:51386763 original size:27 final size:27
Alignment explanation
Indices: 51386516--51386846 Score: 299
Period size: 27 Copynumber: 12.3 Consensus size: 27
51386506 ATAAATCGGG
* *
51386516 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTGCAAATTGA
* *
51386543 GGGGTATTCTGGTAATTTTACAAATT-A
1 -GGGTATTTTGGTAATTTTGCAAATTGA
* *
51386570 GGGGTACTTTGGTAATTTTGCAAACTGA
1 -GGGTATTTTGGTAATTTTGCAAATTGA
51386598 GGGTATTTTGGTAATTTTGCAAATT-A
1 GGGTATTTTGGTAATTTTGCAAATTGA
*
51386624 GGGGTATTTCGGTAATTTTGCAAATTGA
1 -GGGTATTTTGGTAATTTTGCAAATTGA
* * *
51386652 GGGTATTTTTGTAATTTTCCAAAGTGA
1 GGGTATTTTGGTAATTTTGCAAATTGA
* *
51386679 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTGCAAATTGA
* **
51386706 GGGTACTTTGGTAATTTTGCAAACCGA
1 GGGTATTTTGGTAATTTTGCAAATTGA
* * * *
51386733 GGGTATTTTGATAATTTTGTATATTGG
1 GGGTATTTTGGTAATTTTGCAAATTGA
** * * * *
51386760 GGGTGCTTCGATAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTGCAAATTGA
** * ***
51386787 GGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTGCAAATTGA
** * *
51386814 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTGCAAATTGA
51386841 -GGTATT
1 GGGTATT
51386847 ATAAACAGAG
Statistics
Matches: 251, Mismatches: 49, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
26 7 0.03
27 219 0.87
28 25 0.10
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCAAATTGA
Done.