Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 153 of 210
Found at i:51388780 original size:41 final size:41
Alignment explanation
Indices: 51388689--51388791 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 41
51388679 TACCGACACG
* ** * * *
51388689 AAGCCTGCTAGGCGTAAAGGCTATTATGGTACACTGGCGTT
1 AAGCCTGCTAGGCGTAAAGCCTATTATAATACACCGGCATA
* *
51388730 AAGCTTGCTAGGCGTAAAGCCTGA-TATAATTCACCGGCATA
1 AAGCCTGCTAGGCGTAAAGCCT-ATTATAATACACCGGCATA
*
51388771 AAGCCTGCTAGGCATAAAGCC
1 AAGCCTGCTAGGCGTAAAGCC
51388792 CGATTATCAC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 50 0.98
42 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (41 bp):
AAGCCTGCTAGGCGTAAAGCCTATTATAATACACCGGCATA
Found at i:51396364 original size:2 final size:2
Alignment explanation
Indices: 51396357--51396393 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
51396347 TCAAACCCAA
*
51396357 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51396394 CAAGCCTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:51402224 original size:49 final size:49
Alignment explanation
Indices: 51402160--51402257 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
51402150 CAACTTCTAC
* *
51402160 CCACTTAGAGACATAATCTATGGCCATAACTACATACATATTACCCTAA
1 CCACTTAAAGACATAATCTATAGCCATAACTACATACATATTACCCTAA
51402209 CCACTTAAAGACATAATCTATAGCCATAACTACATACATATTACCCTAA
1 CCACTTAAAGACATAATCTATAGCCATAACTACATACATATTACCCTAA
51402258 AAAGGTGGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.41, C:0.27, G:0.06, T:0.27
Consensus pattern (49 bp):
CCACTTAAAGACATAATCTATAGCCATAACTACATACATATTACCCTAA
Found at i:51403313 original size:23 final size:22
Alignment explanation
Indices: 51403269--51403313 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
51403259 GGGTTTGGAT
* *
51403269 ATCTTCTAAAAATCCTTAATAA
1 ATCTTCAAAAAATCCTGAATAA
*
51403291 ATCTTCAATAAAATCCTGCATAA
1 ATCTTCAA-AAAATCCTGAATAA
51403314 CATAGGAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.33
Consensus pattern (22 bp):
ATCTTCAAAAAATCCTGAATAA
Found at i:51408993 original size:12 final size:12
Alignment explanation
Indices: 51408976--51409009 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
51408966 GGCCCTTCCC
51408976 TTTTCTTTTAAA
1 TTTTCTTTTAAA
51408988 TTTTCTTTTAAA
1 TTTTCTTTTAAA
*
51409000 TTTTATTTTA
1 TTTTCTTTTA
51409010 TTATTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTCTTTTAAA
Found at i:51409019 original size:14 final size:15
Alignment explanation
Indices: 51409000--51409036 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
51408990 TTCTTTTAAA
51409000 TTTTATTTTA-TTAT
1 TTTTATTTTATTTAT
51409014 TTTTA-TTTATTTAT
1 TTTTATTTTATTTAT
*
51409028 TTTGATTTT
1 TTTTATTTT
51409037 CCTAGTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 13 0.65
15 3 0.15
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (15 bp):
TTTTATTTTATTTAT
Found at i:51409084 original size:32 final size:34
Alignment explanation
Indices: 51409007--51409087 Score: 87
Period size: 36 Copynumber: 2.4 Consensus size: 34
51408997 AAATTTTATT
*
51409007 TTATTATTTTTATTTATTTATTTTGATTTTCCTAG
1 TTATTATTTTTATTTATTTATTTT-ACTTTCCTAG
* *
51409042 TTATTAATTTTTGTTTATTT-TTCTT-CTTTCTTA-
1 TTATT-ATTTTTATTTATTTATT-TTACTTTCCTAG
51409075 TTATTATTTTTAT
1 TTATTATTTTTAT
51409088 CATTATTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
32 7 0.17
33 5 0.12
34 6 0.15
35 7 0.17
36 15 0.38
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.72
Consensus pattern (34 bp):
TTATTATTTTTATTTATTTATTTTACTTTCCTAG
Found at i:51415892 original size:35 final size:35
Alignment explanation
Indices: 51415845--51415939 Score: 97
Period size: 34 Copynumber: 2.7 Consensus size: 35
51415835 TATTTCGTTG
51415845 GTTTATCCGACTAGCGTTGGGCACAAC-TTCTGTCA
1 GTTTATCCGACTAGCGTTGGGCACAACATT-TGTCA
* * * *
51415880 GTTTATCTGACTA-CTGCTGGGCA-TACATTTGTCG
1 GTTTATCCGACTAGC-GTTGGGCACAACATTTGTCA
* *
51415914 GTTTATCCGACTAGCATTAGGCACAA
1 GTTTATCCGACTAGCGTTGGGCACAA
51415940 ATATCGTTGA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
34 24 0.51
35 23 0.49
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (35 bp):
GTTTATCCGACTAGCGTTGGGCACAACATTTGTCA
Found at i:51415926 original size:34 final size:35
Alignment explanation
Indices: 51415844--51415928 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
51415834 TTATTTCGTT
*
51415844 GGTTTATCCGACTAGCGTTGGGCACAACTTCTGTC
1 GGTTTATCCGACTAGCGCTGGGCACAACTTCTGTC
* * *
51415879 AGTTTATCTGACTA-CTGCTGGGCA-TACATT-TGTC
1 GGTTTATCCGACTAGC-GCTGGGCACAAC-TTCTGTC
51415913 GGTTTATCCGACTAGC
1 GGTTTATCCGACTAGC
51415929 ATTAGGCACA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
34 19 0.46
35 22 0.54
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (35 bp):
GGTTTATCCGACTAGCGCTGGGCACAACTTCTGTC
Found at i:51416063 original size:144 final size:144
Alignment explanation
Indices: 51415793--51416072 Score: 355
Period size: 144 Copynumber: 1.9 Consensus size: 144
51415783 TAAATAATTG
* * **
51415793 CAAATATCATTGATTTATCCAACTTGAGCTAGGCTCACTATTTATTTCGTTGGTTTATCCGACTA
1 CAAATATCATTGATTTATCAAACTTGAGCTAGGCTCACTATTTATTTCATTGGTTTAAACGACTA
* * * * * * * * *
51415858 GCGTTGGGCACAACTTCTGTCAGTTTATCTGACTACTGCTGGGCATACATTTGTCGGTTTATCCG
66 ACGTTAGGCACAACTTCCGCCAGTTTATCTAACTACTACTGGGCACACATTCGTCGATTTATCCG
51415923 ACTAGCATTAGGCA
131 ACTAGCATTAGGCA
* * *
51415937 CAAATATCGTTGATTTATCAAACTTGGGCTAGGCTCACTATTT-TTTTATTCGGTTTAAACGACT
1 CAAATATCATTGATTTATCAAACTTGAGCTAGGCTCACTATTTATTTCATT-GGTTTAAACGACT
* * * * *
51416001 AACGTTAGGCGCAACTTCCGCCAGTTTATCTAACTAGTATTGGGTACACATTCGTCGATTTATCT
65 AACGTTAGGCACAACTTCCGCCAGTTTATCTAACTACTACTGGGCACACATTCGTCGATTTATCC
51416066 GACTAGC
130 GACTAGC
51416073 GCTAGGCGCA
Statistics
Matches: 114, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
143 5 0.04
144 109 0.96
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (144 bp):
CAAATATCATTGATTTATCAAACTTGAGCTAGGCTCACTATTTATTTCATTGGTTTAAACGACTA
ACGTTAGGCACAACTTCCGCCAGTTTATCTAACTACTACTGGGCACACATTCGTCGATTTATCCG
ACTAGCATTAGGCA
Found at i:51417764 original size:43 final size:42
Alignment explanation
Indices: 51417708--51417839 Score: 158
Period size: 43 Copynumber: 3.1 Consensus size: 42
51417698 ATAAATGCCT
* **
51417708 CTAAAGATCATGACCTTTAGCGGCGTTTGTGGGA-AAAGCGCCG
1 CTAAAGACCATGACCTTTAGCGGCGTTT-TCCGACAAA-CGCCG
*** *
51417751 CTAAAGACCATGACCTTTAGCGGCACATTCCTACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCGTTTTCCGACAAACGCCG
*
51417793 CTAAAGACCATGACCTTTAGCGGCGTTTTTCCCACAAACGCCG
1 CTAAAGACCATGACCTTTAGCGGCG-TTTTCCGACAAACGCCG
51417836 CTAA
1 CTAA
51417840 CTATAGGTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 31 0.41
43 45 0.59
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (42 bp):
CTAAAGACCATGACCTTTAGCGGCGTTTTCCGACAAACGCCG
Found at i:51417803 original size:42 final size:43
Alignment explanation
Indices: 51417746--51417839 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 43
51417736 GTGGGAAAAG
*
51417746 CGCCGCTAAAGACCATGACCTTTAGCGGC-ACATTCCTACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGACATTCCCACAAA
***
51417788 CGCCGCTAAAGACCATGACCTTTAGCGGCGTTTTTCCCACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGACATTCCCACAAA
51417831 CGCCGCTAA
1 CGCCGCTAA
51417840 CTATAGGTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 29 0.62
43 18 0.38
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (43 bp):
CGCCGCTAAAGACCATGACCTTTAGCGGCGACATTCCCACAAA
Found at i:51421528 original size:844 final size:806
Alignment explanation
Indices: 51419903--51421553 Score: 2933
Period size: 844 Copynumber: 2.0 Consensus size: 806
51419893 GAGCCAGTCG
51419903 CCCAATAAAACACAATTTACTTTTTCATACCTACTTACTGCTTACAGCTACTACTTTCTTTCTTT
1 CCCAATAAAACACAATTTACTTTTTCATACCTACTTACTGCTTACAGCTACTACTTTCTTTCTTT
51419968 TTTTCCTTTCAAATCTTACAGACAGCTACTAATTGAAGGTTGAATAATGCAACTAACAAACATAA
66 TTTTCCTTTCAAATCTTACAGACAGCTACTAATTGAAGGTTGAATAATGCAACTAACAAACATAA
51420033 ATAATAATTAAATCGATTAACCAATTCCATGCTGTGGTGCAAGTCCAGTGGCCACATACTTGCAT
131 ATAATAATTAAATCGATTAACCAATTCCATGCTGTGGTGCAAGTCCAGTGGCCACATACTTGCAT
51420098 GAATTGTTTACATTTTTCATTAAGTACTTAATTTCTAGATATTTTTCACTTGGATGAAAATTTCA
196 GAATTGTTTACATTTTTCATTAAGTACTTAATTTCTAGATATTTTTCACTTGGATGAAAATTTCA
51420163 CTTCAATTTTTGTAAGAATCATTTACCAAGTTCACACATATATTGCTTGAATGAACCAATAATGA
261 CTTCAATTTTTGTAAGAATCATTTACCAAGTTCACACATATATTGCTTGAATGAACCAATAATGA
51420228 AAGACACACAGTTAACAAAGTTCACGATTACCATTAAGCATTAAATTACATGTAATTTATAATAA
326 AAGACACACAGTTAACAAAGTTCACGATTACCATTAAGCATTAAATTACATGTAATTTATAATAA
51420293 AATGTTTGAATTTGAGAGTATATCATGTTGGTTTTCTCTATTTTTGCTTCTCCCAAAGAGCAGAG
391 AATGTTTGAATTTGAGAGTATATCATGTTGGTTTTCTCTATTTTTGCTTCTCCCAAAGAGCAGAG
51420358 ATCAAATATTACCTTATTTCATTATGATGGTTCTGCTTCATACTTACCTTTTCGAAAGGAGCTGA
456 ATCAAATATTACCTTATTTCATTATGATGGTTCTGCTTCATACTTACCTTTTCGAAAGGAGCTGA
51420423 TGCATTTATGGAAGGACTTGGAAGTCTTTGTGTCTTGTTGTATAATTCGACCATGTGAAATTTCA
521 TGCATTTATGGAAGGACTTGGAAGTCTTTGTGTCTTGTTGTATAATTCGACCATGTGAAATTTCA
51420488 CCTGAGTAAGATAAAATAAAGGAATTGTCTCATCTATAAATCAAACTTGAAATGATATTCACATT
586 CCTGAGTAAGATAAAATAAAGGAATTGTCTCATCTATAAATCAAACTTGAAATGATATTCACATT
51420553 TGTCAGTAGATAACATAATTTCTTTCCCCTTCTTCAGACCACATGCCATAAGTCAGAAACATAAC
651 TGTCAGTAGATAACATAATTTCTTTCCCCTTCTTCAGACCACATGCCATAAGTCAGAAACATAAC
*
51420618 CATCGTAGTTACCTTTGGTAACAGGTTCCTTTGTCAATCCAGTAGACTGCATTTCTAATATACAG
716 CATCGTAGTTACCTTTGGTAACAGGTTCCTCTGTCAATCCAGTAGACTGCATTTCTAATATACAG
51420683 ACTTCAGGCTCCGTTTATCAATAAGT
781 ACTTCAGGCTCCGTTTATCAATAAGT
51420709 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATAAAACACAATTTACTTTTTCA
1 --------------------------------------CCCAATAAAACACAATTTACTTTTTCA
51420774 TACCTACTTACTGCTTACAGCTACTACTTTCTTTCTTTTTTTCCTTTCAAATCTTACAGACAGCT
28 TACCTACTTACTGCTTACAGCTACTACTTTCTTTCTTTTTTTCCTTTCAAATCTTACAGACAGCT
51420839 ACTAATTGAAGGTTGAATAATGCAACTAACAAACATAAATAATAATTAAATCGATTAACCAATTC
93 ACTAATTGAAGGTTGAATAATGCAACTAACAAACATAAATAATAATTAAATCGATTAACCAATTC
51420904 CATGCTGTGGTGCAAGTCCAGTGGCCACATACTTGCATGAATTGTTTACATTTTTCATTAAGTAC
158 CATGCTGTGGTGCAAGTCCAGTGGCCACATACTTGCATGAATTGTTTACATTTTTCATTAAGTAC
51420969 TTAATTTCTAGATATTTTTCACTTGGATGAAAATTTCACTTCAATTTTTGTAAGAATCATTTACC
223 TTAATTTCTAGATATTTTTCACTTGGATGAAAATTTCACTTCAATTTTTGTAAGAATCATTTACC
*
51421034 AAGTTCACACATATATTGCTTGAATGAACCAATAATGCAAGACACACAGTTAACAAAGTTCACGA
288 AAGTTCACACATATATTGCTTGAATGAACCAATAATGAAAGACACACAGTTAACAAAGTTCACGA
51421099 TTACCATTAAGCATTAAATTACATGTAATTTATAATAAAATGTTTGAATTTGAGAGTATATCATG
353 TTACCATTAAGCATTAAATTACATGTAATTTATAATAAAATGTTTGAATTTGAGAGTATATCATG
51421164 TTGGTTTTCTCTATTTTTGCTTCTCCCAAAGAGCAGAGATCAAATATTACCTTATTTCATTATGA
418 TTGGTTTTCTCTATTTTTGCTTCTCCCAAAGAGCAGAGATCAAATATTACCTTATTTCATTATGA
51421229 TGGTTCTGCTTCATACTTACCTTTTCGAAAGGAGCTGATGCATTTATGGAAGGACTTGGAAGTCT
483 TGGTTCTGCTTCATACTTACCTTTTCGAAAGGAGCTGATGCATTTATGGAAGGACTTGGAAGTCT
51421294 TTGTGTCTTGTTGTATAATTCGACCATGTGAAATTTCACCTGAGTAAGATAAAATAAAGGAATTG
548 TTGTGTCTTGTTGTATAATTCGACCATGTGAAATTTCACCTGAGTAAGATAAAATAAAGGAATTG
*
51421359 TCTCATCTATAAATCAAACTTGAAATGATATTCGCATTTGTCAGTAGATAACATAATTTCTTTCC
613 TCTCATCTATAAATCAAACTTGAAATGATATTCACATTTGTCAGTAGATAACATAATTTCTTTCC
51421424 CCTTCTTCAGACCACATGCCATAAGTCAGAAACATAACCATCGTAGTTACCTTTGGTAACAGGTT
678 CCTTCTTCAGACCACATGCCATAAGTCAGAAACATAACCATCGTAGTTACCTTTGGTAACAGGTT
51421489 CCTCTGTCAATCCAGTAGACTGCATTTCTAATATACAGACTTCAGGCTCCGTTTATCAATAAGT
743 CCTCTGTCAATCCAGTAGACTGCATTTCTAATATACAGACTTCAGGCTCCGTTTATCAATAAGT
51421553 C
1 C
51421554 GGAAGGATTA
Statistics
Matches: 804, Mismatches: 3, Indels: 38
0.95 0.00 0.04
Matches are distributed among these distances:
806 1 0.00
844 803 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.35
Consensus pattern (806 bp):
CCCAATAAAACACAATTTACTTTTTCATACCTACTTACTGCTTACAGCTACTACTTTCTTTCTTT
TTTTCCTTTCAAATCTTACAGACAGCTACTAATTGAAGGTTGAATAATGCAACTAACAAACATAA
ATAATAATTAAATCGATTAACCAATTCCATGCTGTGGTGCAAGTCCAGTGGCCACATACTTGCAT
GAATTGTTTACATTTTTCATTAAGTACTTAATTTCTAGATATTTTTCACTTGGATGAAAATTTCA
CTTCAATTTTTGTAAGAATCATTTACCAAGTTCACACATATATTGCTTGAATGAACCAATAATGA
AAGACACACAGTTAACAAAGTTCACGATTACCATTAAGCATTAAATTACATGTAATTTATAATAA
AATGTTTGAATTTGAGAGTATATCATGTTGGTTTTCTCTATTTTTGCTTCTCCCAAAGAGCAGAG
ATCAAATATTACCTTATTTCATTATGATGGTTCTGCTTCATACTTACCTTTTCGAAAGGAGCTGA
TGCATTTATGGAAGGACTTGGAAGTCTTTGTGTCTTGTTGTATAATTCGACCATGTGAAATTTCA
CCTGAGTAAGATAAAATAAAGGAATTGTCTCATCTATAAATCAAACTTGAAATGATATTCACATT
TGTCAGTAGATAACATAATTTCTTTCCCCTTCTTCAGACCACATGCCATAAGTCAGAAACATAAC
CATCGTAGTTACCTTTGGTAACAGGTTCCTCTGTCAATCCAGTAGACTGCATTTCTAATATACAG
ACTTCAGGCTCCGTTTATCAATAAGT
Found at i:51422946 original size:25 final size:25
Alignment explanation
Indices: 51422918--51422967 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
51422908 CATTATTGCT
51422918 TTTTTATAAATTGATTTATATTTTG
1 TTTTTATAAATTGATTTATATTTTG
*
51422943 TTTTTATAAATTGATTTATTTTTTG
1 TTTTTATAAATTGATTTATATTTTG
51422968 CGGCGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (25 bp):
TTTTTATAAATTGATTTATATTTTG
Found at i:51423105 original size:105 final size:105
Alignment explanation
Indices: 51422936--51423407 Score: 637
Period size: 105 Copynumber: 4.4 Consensus size: 105
51422926 AATTGATTTA
51422936 TATTTTG-TTTTTATAAATTGATTTATTTTTTGCGGCG-TTTTTATAAAACGCCGCTATTTCATT
1 TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
* * *
51422999 TTTAACAAAATGACGTCGTTTTGCTATTC-ATAAAATTTTT
66 TTGAACAAAATGACGCCGTTTTGCTATGCTA-AAAATTTTT
51423039 TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
1 TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
51423104 TTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTT
66 TTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTT
* * * * * *
51423144 TATTTTATTTTTTTATATATTGATTTATTTTTTGCGGCGTTTGTCATAAAAACGCTGCAAAAAAA
1 TATTTT-GTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTAT-AAAACGCCGC-----TA
* * * * * **
51423209 ATTCATTTTTAACAAAATGGCGCCATTTTGCTATTC-ATAATTTTTTT
59 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTA-AAAATTTTT
51423256 TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
1 TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
*
51423321 TTGAACAAAATGACGCCGTTTTGCTCTGCTAAAAATTTTT
66 TTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTT
*
51423361 TATTTTATTTTTTATATATATATTGATTTATTTTTTGCGGCGTTTTT
1 TATTTT-GTTTTT-TATA-A-ATTGATTTATTTTTTGCGGCGTTTTT
51423408 ATATTGCTTA
Statistics
Matches: 322, Mismatches: 31, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
103 7 0.02
104 30 0.09
105 111 0.34
106 43 0.13
107 13 0.04
108 1 0.00
109 26 0.08
110 9 0.03
111 37 0.11
112 45 0.14
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.51
Consensus pattern (105 bp):
TATTTTGTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATT
TTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTT
Found at i:51423311 original size:217 final size:211
Alignment explanation
Indices: 51422943--51423406 Score: 741
Period size: 217 Copynumber: 2.2 Consensus size: 211
51422933 TTATATTTTG
* * * *
51422943 TTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAAAACGCCGCTATTTCATTTTTAACAAA
1 TTTTTATATATTGATTTATTTTTTGCGGCGTTTTCATAAAACGCCGCAAATTCATTTTTAACAAA
* *
51423008 ATGACGTCGTTTTGCTATTCATAAAATTTTTTATTTTGTTTTTTATAAATTGATTTATTTTTTGC
66 ATGACGCCATTTTGCTATTCATAAAATTTTTTATTTTGTTTTTTATAAATTGATTTATTTTTTGC
51423073 GGCGTTTTTTATAAAACGCCGCTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAA
131 GGCGTTTTTTATAAAACGCCGCTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAA
51423138 ATTTTTTATTTTA-TT
196 ATTTTTTATTTTATTT
*
51423153 TTTTTATATATTGATTTATTTTTTGCGGCGTTTGTCATAAAAACGCTGCAAAAAAAATTCATTTT
1 TTTTTATATATTGATTTATTTTTTGCGGCGTTT-TCAT-AAAACGCCGC-----AAATTCATTTT
* **
51423218 TAACAAAATGGCGCCATTTTGCTATTCATAATTTTTTTTATTTTGTTTTTTATAAATTGATTTAT
59 TAACAAAATGACGCCATTTTGCTATTCATAAAATTTTTTATTTTGTTTTTTATAAATTGATTTAT
*
51423283 TTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATTTTGAACAAAATGACGCCGTTTTGCTCT
124 TTTTTGCGGCGTTTTTTATAAAACGCCGCTATTTCATTTTGAACAAAATGACGCCGTTTTGCTAT
51423348 GCTAAAAATTTTTTATTTTATTT
189 GCTAAAAATTTTTTATTTTATTT
51423371 TTTATATATATATTGATTTATTTTTTGCGGCGTTTT
1 TTT-T-TATATATTGATTTATTTTTTGCGGCGTTTT
51423407 TATATTGCTT
Statistics
Matches: 233, Mismatches: 11, Indels: 11
0.91 0.04 0.04
Matches are distributed among these distances:
210 32 0.14
211 3 0.01
212 9 0.04
217 153 0.66
218 5 0.02
219 2 0.01
220 29 0.12
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (211 bp):
TTTTTATATATTGATTTATTTTTTGCGGCGTTTTCATAAAACGCCGCAAATTCATTTTTAACAAA
ATGACGCCATTTTGCTATTCATAAAATTTTTTATTTTGTTTTTTATAAATTGATTTATTTTTTGC
GGCGTTTTTTATAAAACGCCGCTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAA
ATTTTTTATTTTATTT
Found at i:51423539 original size:16 final size:15
Alignment explanation
Indices: 51423508--51423537 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
51423498 AATTTTTTAT
51423508 TTTATTTTTTATAAA
1 TTTATTTTTTATAAA
51423523 TTTATTTTTTATAAA
1 TTTATTTTTTATAAA
51423538 ATAGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTATTTTTTATAAA
Found at i:51423720 original size:15 final size:14
Alignment explanation
Indices: 51423690--51423727 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
51423680 TATGCTAAAA
51423690 ATTTTTTAT--TTT
1 ATTTTTTATAATTT
51423702 ATTTTTTATAATTT
1 ATTTTTTATAATTT
51423716 GATTTTTTATAA
1 -ATTTTTTATAA
51423728 AATAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
14 3 0.13
15 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
ATTTTTTATAATTT
Found at i:51424052 original size:15 final size:14
Alignment explanation
Indices: 51424034--51424136 Score: 68
Period size: 15 Copynumber: 7.1 Consensus size: 14
51424024 TCGACCCCTA
51424034 AATCCCTAAACCTT
1 AATCCCTAAACCTT
*
51424048 AAAT-CCTTAACTCTT
1 -AATCCCTAAAC-CTT
* *
51424063 AACCCCT-AACATCT
1 AATCCCTAAACCT-T
* *
51424077 AACCCCTAAACCCCT
1 AATCCCTAAA-CCTT
*
51424092 AATCCCTAAACCCCT
1 AATCCCTAAA-CCTT
51424107 AATCCCTAAACCTT
1 AATCCCTAAACCTT
*
51424121 AAATCCC-AACCCTT
1 -AATCCCTAAACCTT
51424135 AA
1 AA
51424137 ACCATAATCC
Statistics
Matches: 74, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
13 3 0.04
14 28 0.38
15 42 0.57
16 1 0.01
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (14 bp):
AATCCCTAAACCTT
Found at i:51424072 original size:7 final size:7
Alignment explanation
Indices: 51424062--51424115 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
51424052 CCTTAACTCT
51424062 TAACCCC
1 TAACCCC
**
51424069 TAACATC
1 TAACCCC
51424076 TAACCCC
1 TAACCCC
51424083 TAAACCCC
1 T-AACCCC
*
51424091 TAATCCC
1 TAACCCC
51424098 TAAACCCC
1 T-AACCCC
*
51424106 TAATCCC
1 TAACCCC
51424113 TAA
1 TAA
51424116 ACCTTAAATC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 25 0.66
8 13 0.34
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.20
Consensus pattern (7 bp):
TAACCCC
Found at i:51424090 original size:8 final size:8
Alignment explanation
Indices: 51424077--51424118 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
51424067 CCTAACATCT
51424077 AACCCCTA
1 AACCCCTA
51424085 AACCCCT-
1 AACCCCTA
*
51424092 AATCCCTA
1 AACCCCTA
51424100 AACCCCT-
1 AACCCCTA
*
51424107 AATCCCTA
1 AACCCCTA
51424115 AACC
1 AACC
51424119 TTAAATCCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 12 0.43
8 16 0.57
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.17
Consensus pattern (8 bp):
AACCCCTA
Found at i:51424876 original size:73 final size:73
Alignment explanation
Indices: 51424747--51424883 Score: 222
Period size: 73 Copynumber: 1.9 Consensus size: 73
51424737 AGCATTTTTT
* *
51424747 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
1 GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
51424812 TTAAAAAC
66 TTAAAAAC
* *
51424820 GCCGCTAAATCCCCAAAAGCTCACAAAACGGTGTCGTTGGGCTTAG-GTTTTCTTGCGGCGTTTT
1 GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTT-TTGCGGCGTTTT
51424884 TGAGAAACCG
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 4 0.07
73 55 0.93
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (73 bp):
GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
TTAAAAAC
Found at i:51424899 original size:73 final size:73
Alignment explanation
Indices: 51424747--51424901 Score: 215
Period size: 73 Copynumber: 2.1 Consensus size: 73
51424737 AGCATTTTTT
* *
51424747 GCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
1 GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
*
51424812 TTAAAAAC
66 TGAAAAAC
* *
51424820 GCCGCTAAATCCCCAAAAGCTCACAAAACGGTGTCGTTGGGCTTAG-GTTTTCTTGCGGCGTTTT
1 GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTT-TTGCGGCGTTTT
*
51424884 -TGAGAAACC
65 CTGA-AAAAC
*
51424893 GTCGCTAAA
1 GCCGCTAAA
51424902 GCCCTGAGCA
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
72 6 0.08
73 67 0.92
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (73 bp):
GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGTTTTC
TGAAAAAC
Found at i:51424978 original size:114 final size:114
Alignment explanation
Indices: 51424801--51425243 Score: 683
Period size: 114 Copynumber: 3.9 Consensus size: 114
51424791 AGAATTTTTT
* * *
51424801 GCGGCGTTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGTGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * * * *
51424866 GTTTTCTTGCGGCG-TTTTTGAGAAACCGTCGCTAAAGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTGAGCATTA
*
51424915 GCGGCGCTTTCTTAAAAACGCCGCTAAAGCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
*
51424980 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAGGCCCTGAGCATTA
66 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
51425029 GCGGCGCTTTCTTAAAAACGCCGCTAAA-CCCTCGAAAGCTCACAAAACGTCGTCGTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-CGAAAGCTCACAAAACGGCGTCGTTGGGCTTA
* * *
51425093 TGTTTTTTTGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAGCGTTA
65 GGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
51425143 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTTACAAAACGGTGTCGTTGGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* *
51425208 GTTTTTTTGCAGCGCTTTCTCAGAAACGCCGCTAAA
66 GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
51425244 TCCCCGAAAG
Statistics
Matches: 305, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
113 3 0.01
114 294 0.96
115 8 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (114 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:51425235 original size:73 final size:73
Alignment explanation
Indices: 51425146--51425315 Score: 270
Period size: 73 Copynumber: 2.3 Consensus size: 73
51425136 AGCGTTAGCG
* * * *
51425146 GCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCT-TACAAAACGGTGTCGTTGGGCTTATGT
1 GCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCGA-AAAACGGCGTCGTTGGGCTTAGGT
51425210 TTTTTTGCA
65 TTTTTTGCA
*
51425219 GCGCTTTCTCAGAAACGCCGCTAAATCCCCGAAAGCTCGAAAAACGGCGTCGTTGGGCTTAGGTT
1 GCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCGAAAAACGGCGTCGTTGGGCTTAGGTT
*
51425284 TTTTTGCG
66 TTTTTGCA
51425292 GCGCTTTCTCAAAAACGCCGCTAA
1 GCGCTTTCTCAAAAACGCCGCTAA
51425316 TGCTTATTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 88 0.99
74 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (73 bp):
GCGCTTTCTCAAAAACGCCGCTAAATCCCCGAAAGCTCGAAAAACGGCGTCGTTGGGCTTAGGTT
TTTTTGCA
Found at i:51429086 original size:21 final size:22
Alignment explanation
Indices: 51429041--51429086 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
51429031 AGAGAAAAAT
*
51429041 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
51429063 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
51429084 AAA
1 AAA
51429087 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:51431620 original size:19 final size:22
Alignment explanation
Indices: 51431579--51431625 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 22
51431569 ACTTATGTAT
51431579 ATATTTATTCATTGAATGATATA
1 ATATTTATTCATTGAAT-ATATA
51431602 ATATTT-TTC-TTGAAT-TATA
1 ATATTTATTCATTGAATATATA
*
51431621 CTATT
1 ATATT
51431626 AAAGTTGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
21 6 0.26
22 3 0.13
23 6 0.26
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.53
Consensus pattern (22 bp):
ATATTTATTCATTGAATATATA
Found at i:51442345 original size:4 final size:4
Alignment explanation
Indices: 51442329--51442362 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
51442319 CACATATAAC
*
51442329 ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC
51442363 CCTAATAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.26, G:0.03, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:51452307 original size:43 final size:43
Alignment explanation
Indices: 51452258--51452379 Score: 135
Period size: 42 Copynumber: 2.9 Consensus size: 43
51452248 AAAAAGCTCG
* *
51452258 TACAATGCCAAC-ATCCCATAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCCAACTATCCCAGACAG-GGTCTTACACGTAATCAAA
* *
51452300 TAACAATGCC-ACTGTCCCAGACAGGGTCTTACACGTAATCATA
1 T-ACAATGCCAACTATCCCAGACAGGGTCTTACACGTAATCAAA
* * *
51452343 TACGATGCCAA-TGTCCCAGACACGGTCTTACACGTAA
1 TACAATGCCAACTATCCCAGACAGGGTCTTACACGTAA
51452380 ATCTCAAATC
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 35 0.50
43 34 0.49
44 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
TACAATGCCAACTATCCCAGACAGGGTCTTACACGTAATCAAA
Found at i:51452363 original size:42 final size:42
Alignment explanation
Indices: 51452281--51452419 Score: 147
Period size: 42 Copynumber: 3.2 Consensus size: 42
51452271 TCCCATACGT
* * * *
51452281 GGTCTTACATGTAATCAAATAACAATGCCACTGTCCCAGACAG
1 GGTCTTACACGTAATCATAT-ACGATGCCAATGTCCCAGACAG
*
51452324 GGTCTTACACGTAATCATATACGATGCCAATGTCCCAGACAC
1 GGTCTTACACGTAATCATATACGATGCCAATGTCCCAGACAG
* * *
51452366 GGTCTTACACGTAAATC-TCAAATCGATGCTAACGTCCCAGAC-G
1 GGTCTTACACGT-AATCAT-ATA-CGATGCCAATGTCCCAGACAG
51452409 TGGTCTTACAC
1 -GGTCTTACAC
51452420 AAAATCACAT
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
42 32 0.39
43 24 0.29
44 27 0.33
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCATATACGATGCCAATGTCCCAGACAG
Found at i:51452406 original size:44 final size:42
Alignment explanation
Indices: 51452262--51452419 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
51452252 AGCTCGTACA
* * ** * *
51452262 ATGCCAACATCCCATACGTGGTCTTACATGTAATCAAATAACA
1 ATGCCAACGTCCCAGACACGGTCTTACACGTAATCAAAT-ACG
* *
51452305 ATGCC-ACTGTCCCAGACAGGGTCTTACACGTAATCATATACG
1 ATGCCAAC-GTCCCAGACACGGTCTTACACGTAATCAAATACG
*
51452347 ATGCCAATGTCCCAGACACGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAACGTCCCAGACACGGTCTTACACGT-AA--TCAAATACG
* **
51452391 ATGCTAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACACGGTCTTACAC
51452420 AAAATCACAT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 31 0.32
43 33 0.34
44 27 0.28
45 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACACGGTCTTACACGTAATCAAATACG
Found at i:51456564 original size:18 final size:17
Alignment explanation
Indices: 51456533--51456575 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
51456523 CGATGATTGG
*
51456533 CTAAAAAT-ATGGTTTT
1 CTAAAAATAAAGGTTTT
51456549 ACTAAAAATAAAGGTTTT
1 -CTAAAAATAAAGGTTTT
*
51456567 TTAAAAATA
1 CTAAAAATA
51456576 CGAACGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (17 bp):
CTAAAAATAAAGGTTTT
Found at i:51457344 original size:11 final size:12
Alignment explanation
Indices: 51457328--51457360 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
51457318 GGACCCAAGA
51457328 TGAATTAATTT-
1 TGAATTAATTTG
*
51457339 TGAATTCATTTG
1 TGAATTAATTTG
51457351 TGAATTAATT
1 TGAATTAATT
51457361 CACTTGTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:51458702 original size:10 final size:10
Alignment explanation
Indices: 51458687--51458721 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
51458677 AATATTCTAT
51458687 TAATTTAATA
1 TAATTTAATA
51458697 TAATTTAATA
1 TAATTTAATA
*
51458707 TTAATTTAATC
1 -TAATTTAATA
51458718 TAAT
1 TAAT
51458722 ATTTATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (10 bp):
TAATTTAATA
Found at i:51458710 original size:16 final size:16
Alignment explanation
Indices: 51458686--51458724 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
51458676 AAATATTCTA
51458686 TTAAT-TTAATATAAT
1 TTAATATTAATATAAT
*
51458701 TTAATATTAATTTAAT
1 TTAATATTAATATAAT
*
51458717 CTAATATT
1 TTAATATT
51458725 TATCTTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
TTAATATTAATATAAT
Found at i:51458713 original size:11 final size:11
Alignment explanation
Indices: 51458684--51458716 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
51458674 ATAAATATTC
51458684 TATTAATTTAA
1 TATTAATTTAA
51458695 TA-TAATTTAA
1 TATTAATTTAA
51458705 TATTAATTTAA
1 TATTAATTTAA
51458716 T
1 T
51458717 CTAATATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:51458727 original size:61 final size:59
Alignment explanation
Indices: 51458639--51458755 Score: 155
Period size: 58 Copynumber: 1.9 Consensus size: 59
51458629 AGTGATTATC
* * ** *
51458639 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATATAAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-TA-ATAAATATTAGATTAAATTAATATAAT
51458701 TTAATATT-AATTTAATCTAATATTTATCTTAATAAATATTAGATTAAATTAATAT
1 TTAATATTAAATTTAATCTAATATTTATCTTAATAAATATTAGATTAAATTAATAT
51458756 TAAAGTGATT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
58 21 0.42
59 2 0.04
60 1 0.02
61 18 0.36
62 8 0.16
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTAATAAATATTAGATTAAATTAATATAAT
Found at i:51471864 original size:51 final size:49
Alignment explanation
Indices: 51471697--51471889 Score: 165
Period size: 51 Copynumber: 3.9 Consensus size: 49
51471687 AAAGTGAAAG
* * *
51471697 TGAT-GGTCACATGTGTGGTACTATGTGCAGGCTACTACGTGTACCAGAA
1 TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTA-CAGGA
* * * * * *
51471746 TGATGGGTCGCATGTGTAGTACTGTGTGTAGGCTACTATGCGTACCGGA
1 TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAGGA
* * * * **
51471795 TAGCTTCGATCACGTGTGTAGTACTATGTGCAAGCTACTATGTGTATTGGA
1 T-G-ATCGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAGGA
* *
51471846 TGGAAAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTTTGTG
1 T-G--ATCGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
51471890 AATCGGGTAC
Statistics
Matches: 113, Mismatches: 27, Indels: 6
0.77 0.18 0.04
Matches are distributed among these distances:
49 8 0.07
50 34 0.30
51 70 0.62
52 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (49 bp):
TGATCGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAGGA
Found at i:51471965 original size:44 final size:45
Alignment explanation
Indices: 51471900--51471989 Score: 146
Period size: 44 Copynumber: 2.0 Consensus size: 45
51471890 AATCGGGTAC
*
51471900 CATTGACTATAAAGGTGGTTGCTATGTGTTGATTCCACCGAGTAT
1 CATTGACTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTAT
* *
51471945 CATTGATTAT-AAGGTGGTTGCTATGTGCTGATTCCACCGTGTAT
1 CATTGACTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTAT
51471989 C
1 C
51471990 TGTTATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 33 0.79
45 9 0.21
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (45 bp):
CATTGACTATAAAGGTGGTTGCTATGTGCTGATTCCACCGAGTAT
Found at i:51476618 original size:12 final size:12
Alignment explanation
Indices: 51476601--51476629 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
51476591 GGGTGGCAAT
51476601 GATGCATTGCTA
1 GATGCATTGCTA
51476613 GATGCATTGCTA
1 GATGCATTGCTA
51476625 GATGC
1 GATGC
51476630 CACTCATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (12 bp):
GATGCATTGCTA
Found at i:51477493 original size:23 final size:23
Alignment explanation
Indices: 51477467--51477512 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51477457 TGTTATAACT
51477467 TTTTTTATTTACCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
51477490 TTTTTTATTTACCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
51477513 AATAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTTTATTTACCAAAATATATA
Found at i:51477889 original size:19 final size:19
Alignment explanation
Indices: 51477865--51477923 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
51477855 TCAATTTTTT
51477865 ATTTAATAACTCTATTTCA
1 ATTTAATAACTCTATTTCA
*
51477884 ATTTAATAA-ACTATTCTC-
1 ATTTAATAACTCTATT-TCA
*
51477902 ATTTAATAACTCTATTTTA
1 ATTTAATAACTCTATTTCA
51477921 ATT
1 ATT
51477924 GAGTAATACT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAATAACTCTATTTCA
Found at i:51484137 original size:30 final size:30
Alignment explanation
Indices: 51484070--51484127 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
51484060 CGTGAAAATT
*
51484070 ATAA-AAAA-TCTAAAAAATATATTTAAAA
1 ATAATAAAACTCTAAAAAATATATTAAAAA
*
51484098 ATAATAAAACTCTAAAAAATGTATTAAAAA
1 ATAATAAAACTCTAAAAAATATATTAAAAA
51484128 CATTTAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 4 0.15
29 4 0.15
30 18 0.69
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (30 bp):
ATAATAAAACTCTAAAAAATATATTAAAAA
Found at i:51493344 original size:69 final size:71
Alignment explanation
Indices: 51493246--51493392 Score: 280
Period size: 69 Copynumber: 2.1 Consensus size: 71
51493236 CCACTACCCA
51493246 AACCCAACTAGCCCAAATGCCCATGATCAAACACTAAATCTGATTGGCCCAGTTACAGTGGCCCG
1 AACCCAACTAGCCCAAATGCCCATGATCAAACACTAAATCTGATTGGCCCAGTTACAGTGGCCCG
51493311 ACACCT
66 ACACCT
51493317 -ACCCAACTAGCCC-AATGCCCATGATCAAACACTAAATCTGATTGGCCCAGTTACAGTGGCCCG
1 AACCCAACTAGCCCAAATGCCCATGATCAAACACTAAATCTGATTGGCCCAGTTACAGTGGCCCG
51493380 ACACCT
66 ACACCT
51493386 AACCCAA
1 AACCCAA
51493393 AACCCGATTC
Statistics
Matches: 75, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
69 56 0.75
70 19 0.25
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.18
Consensus pattern (71 bp):
AACCCAACTAGCCCAAATGCCCATGATCAAACACTAAATCTGATTGGCCCAGTTACAGTGGCCCG
ACACCT
Found at i:51496065 original size:21 final size:19
Alignment explanation
Indices: 51496035--51496084 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
51496025 ATATAATAAT
*
51496035 AATATATTTTTAATTGTTATC
1 AATATA-TTTTAAATG-TATC
*
51496056 AATATGTTTTAAATGTATC
1 AATATATTTTAAATGTATC
51496075 AATATTATTT
1 AATA-TATTT
51496085 AAAAATACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.54
Consensus pattern (19 bp):
AATATATTTTAAATGTATC
Found at i:51496074 original size:19 final size:19
Alignment explanation
Indices: 51496038--51496087 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
51496028 TAATAATAAT
*
51496038 ATATTTTTAATTGTTATCA
1 ATATTTTTAAATGTTATCA
51496057 ATATGTTTTAAATG-TATCA
1 ATAT-TTTTAAATGTTATCA
51496076 ATATTATTTAAA
1 ATATT-TTTAAA
51496088 AATACATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 1 0.04
19 19 0.68
20 8 0.29
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (19 bp):
ATATTTTTAAATGTTATCA
Found at i:51499540 original size:21 final size:21
Alignment explanation
Indices: 51499514--51499564 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
51499504 TTGCAAGATT
51499514 GAAGAATTGAAAAAGAGGATA
1 GAAGAATTGAAAAAGAGGATA
51499535 GAAGAATTGAAAAAGAGGATA
1 GAAGAATTGAAAAAGAGGATA
51499556 GAAGAATTG
1 GAAGAATTG
51499565 GAGTACGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.16
Consensus pattern (21 bp):
GAAGAATTGAAAAAGAGGATA
Found at i:51508626 original size:44 final size:44
Alignment explanation
Indices: 51508534--51508906 Score: 204
Period size: 44 Copynumber: 8.0 Consensus size: 44
51508524 GAGATCGCAT
* ** *
51508534 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAACGGAA
1 CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* *
51508578 CAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* ** *
51508622 CAGAT-TAAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAG
1 CAGATCGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAGT-G-G-AG
*
51508669 -ATCGCATCAAATTGAAGGC-AGAAATCTTATCTCACTGAGATTACAGTGGAG
1 CA--G-ATC-----GAA-GCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* *
51508720 CAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* * ** * *
51508764 CGGAT-TAAAATA-AAGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCG
1 CAGATCGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G
* * *
51508815 CATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 ---CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* * * *
51508862 CAGATCGAAGCTAGTAAGCCTATCTCCCTGAGATTATAGTGGAG
1 CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
51508906 C
1 C
51508907 GGACTAAAAT
Statistics
Matches: 251, Mismatches: 42, Indels: 72
0.69 0.12 0.20
Matches are distributed among these distances:
42 2 0.01
43 13 0.05
44 155 0.62
45 1 0.00
46 2 0.01
47 4 0.02
48 1 0.00
49 9 0.04
50 1 0.00
51 4 0.02
52 2 0.01
53 1 0.00
54 43 0.17
55 9 0.04
56 4 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (44 bp):
CAGATCGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
Found at i:51508724 original size:142 final size:142
Alignment explanation
Indices: 51508467--51508969 Score: 819
Period size: 142 Copynumber: 3.5 Consensus size: 142
51508457 TGCCTCCATC
* *
51508467 GATTATAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGGAGATCGC
1 GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
* *
51508532 ATCAGATTGAA-GCTAGAAATCTTATCTCCCTGAGATTACAACGGAACAGATCGAAGCTAGTAAT
66 ATCAGATTGAAGGC-AGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCTAGTAAT
51508596 CCTATCTCCCTGA
130 CCTATCTCCCTGA
*
51508609 GATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
1 GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
* * *
51508674 ATCAAATTGAAGGCAGAAATCTTATCTCACTGAGATTACAGTGGAGCAGATCGAAGCTAGTAATC
66 ATCAGATTGAAGGCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCTAGTAATC
51508739 CTATCTCCCTGA
131 CTATCTCCCTGA
*
51508751 GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGC
1 GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
* *
51508816 ATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCTAGTAAGC
66 ATCAGATTGAAGGCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCTAGTAATC
51508881 CTATCTCCCTGA
131 CTATCTCCCTGA
* * * ** * *
51508893 GATTATAGTGGAGCGGACTAAAATAAATGATCTTATCTCTCTGAAGTTACAGCGGAGTAGCTCAC
1 GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
*
51508958 ATCAGAATGAAG
66 ATCAGATTGAAG
51508970 CTACAACAGC
Statistics
Matches: 336, Mismatches: 24, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
142 334 0.99
143 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (142 bp):
GATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGC
ATCAGATTGAAGGCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGCTAGTAATC
CTATCTCCCTGA
Found at i:51510686 original size:19 final size:20
Alignment explanation
Indices: 51510647--51510689 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
51510637 TAATAATAAT
* *
51510647 ATATTTTTTAATTGTTATCA
1 ATATGTTTTAAATGTTATCA
51510667 ATATGTTTTAAATG-TATCA
1 ATATGTTTTAAATGTTATCA
51510686 ATAT
1 ATAT
51510690 TATTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
ATATGTTTTAAATGTTATCA
Found at i:51510695 original size:19 final size:19
Alignment explanation
Indices: 51510651--51510697 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
51510641 AATAATATAT
*
51510651 TTTTTAATTGTTATCAATA
1 TTTTTAAATGTTATCAATA
51510670 TGTTTTAAATG-TATCAATA
1 T-TTTTAAATGTTATCAATA
51510689 TTATTTAAA
1 TT-TTTAAA
51510698 AATACATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.53
Consensus pattern (19 bp):
TTTTTAAATGTTATCAATA
Found at i:51510791 original size:16 final size:16
Alignment explanation
Indices: 51510770--51510807 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
51510760 CAAATTATCC
51510770 TTTTATTCACATAATT-
1 TTTTATT-ACATAATTG
51510786 TTTTA-TACATAATTG
1 TTTTATTACATAATTG
51510801 TTTTATT
1 TTTTATT
51510808 TCTTAAACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
15 6 0.30
16 6 0.30
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (16 bp):
TTTTATTACATAATTG
Found at i:51514205 original size:26 final size:27
Alignment explanation
Indices: 51514156--51514214 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
51514146 ACCCGTAATT
* *
51514156 ATATATGTTATATAATAAGACCCATGC
1 ATATATGTTACATAATAAGACCCACGC
*
51514183 ATATATG-TACATAGTAAGACCCACGC
1 ATATATGTTACATAATAAGACCCACGC
*
51514209 AAATAT
1 ATATAT
51514215 ATTAATACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (27 bp):
ATATATGTTACATAATAAGACCCACGC
Found at i:51514340 original size:62 final size:64
Alignment explanation
Indices: 51514274--51514398 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 64
51514264 TATATATTGT
* *
51514274 ATACAACAGAACCATGCATA-TATATTATATATA-ACACCAAAATCCATTAATATATATACCGC
1 ATACAACAGAACCATGCATAGTATATTATATATAGACACCAAAACCCATCAATATATATACCGC
*
51514336 ATACAATAGAACCATGCATATGTATATTATATATATGACACCAAAACCCATCAATATATATAC
1 ATACAACAGAACCATGCATA-GTATATTATATATA-GACACCAAAACCCATCAATATATATAC
51514399 TATATATAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
62 19 0.34
64 13 0.23
66 24 0.43
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (64 bp):
ATACAACAGAACCATGCATAGTATATTATATATAGACACCAAAACCCATCAATATATATACCGC
Found at i:51516165 original size:41 final size:41
Alignment explanation
Indices: 51516055--51516169 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
51516045 CTTTGAGTCC
* * *
51516055 AGCAGACTTCATGCCGGTGATTTATACCAGGCTCTCTACCT
1 AGCAGGCTTCATGCCGGTGATTTATATCAGGCTCTATACCT
* * *
51516096 AGTAGGC-TCTATGCTGGTG-TGTTGTATCAGGCTCTATACCT
1 AGCAGGCTTC-ATGCCGGTGAT-TTATATCAGGCTCTATACCT
* *
51516137 AGCAGGCTTCGTGCCAGTGATTTATATCAGGCT
1 AGCAGGCTTCATGCCGGTGATTTATATCAGGCT
51516170 TTGTGCTGGT
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
40 3 0.05
41 53 0.90
42 3 0.05
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (41 bp):
AGCAGGCTTCATGCCGGTGATTTATATCAGGCTCTATACCT
Found at i:51522935 original size:195 final size:195
Alignment explanation
Indices: 51522603--51522993 Score: 766
Period size: 195 Copynumber: 2.0 Consensus size: 195
51522593 GGTCTGGTCG
51522603 AGTTAAGCCTAAGCATGATATTAACATAACTTATGATTGTCCCAATCCCAGCCCGACCTGAAACA
1 AGTTAAGCCTAAGCATGATATTAACATAACTTATGATTGTCCCAATCCCAGCCCGACCTGAAACA
51522668 CGGGCTTAAATTTTTGCCCAAATCCGCCCATATTTGCAACTAACCCAAGCCCATTTGGGCCAACC
66 CGGGCTTAAATTTTTGCCCAAATCCGCCCATATTTGCAACTAACCCAAGCCCATTTGGGCCAACC
51522733 TATATTATTTTTTGAATTTTCTTG-AAAAATATTTATATTATATTATTTTAATATTTAATAATTT
131 TATATTATTTTTTGAATTTTCTTGAAAAAATATTTA-ATTATATTATTTTAATATTTAATAATTT
51522797 T
195 T
51522798 AGTTAAGCCTAAGCATGATATTAACATAACTTATGATTGTCCCAATCCCAGCCCGACCTGAAACA
1 AGTTAAGCCTAAGCATGATATTAACATAACTTATGATTGTCCCAATCCCAGCCCGACCTGAAACA
51522863 CGGGCTTAAATTTTTGCCCAAATCCGCCCATATTTGCAACTAACCCAAGCCCATTTGGGCCAACC
66 CGGGCTTAAATTTTTGCCCAAATCCGCCCATATTTGCAACTAACCCAAGCCCATTTGGGCCAACC
51522928 TATATTATTTTTTGAATTTTCTTGAAAAAATATTTAATTATATTATTTTAATATTTAATAATTTT
131 TATATTATTTTTTGAATTTTCTTGAAAAAATATTTAATTATATTATTTTAATATTTAATAATTTT
51522993 A
1 A
51522994 CACATTCTTT
Statistics
Matches: 195, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
195 184 0.94
196 11 0.06
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (195 bp):
AGTTAAGCCTAAGCATGATATTAACATAACTTATGATTGTCCCAATCCCAGCCCGACCTGAAACA
CGGGCTTAAATTTTTGCCCAAATCCGCCCATATTTGCAACTAACCCAAGCCCATTTGGGCCAACC
TATATTATTTTTTGAATTTTCTTGAAAAAATATTTAATTATATTATTTTAATATTTAATAATTTT
Found at i:51523916 original size:12 final size:13
Alignment explanation
Indices: 51523901--51523930 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
51523891 ACCTTCACTT
51523901 TTCTCTTCTC-TC
1 TTCTCTTCTCTTC
51523913 TTCTCTTCTCTTC
1 TTCTCTTCTCTTC
51523926 TTCTC
1 TTCTC
51523931 CTCTTCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (13 bp):
TTCTCTTCTCTTC
Found at i:51524657 original size:26 final size:27
Alignment explanation
Indices: 51524628--51524689 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
51524618 GCAAATGGCC
51524628 GAAATACCCCCA-AGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
51524654 GAAATA-CCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
**
51524680 GTTATACCCC
1 GAAATACCCC
51524690 TAGGAGATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 5 0.16
26 24 0.75
27 3 0.09
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACT
Found at i:51524710 original size:27 final size:26
Alignment explanation
Indices: 51524635--51524712 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
51524625 GCCGAAATAC
* **
51524635 CCCCA-AGGGTAAAATGACTGAAATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51524660 CCCCATAGGGTAAAATGACTGTTATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51524686 CCCC-TAGGAGATAAAATTACCGTTATA
1 CCCCATAGG-G-TAAAATGACCGTTATA
51524713 GCCTTATGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.20
26 23 0.50
27 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (26 bp):
CCCCATAGGGTAAAATGACCGTTATA
Found at i:51525055 original size:28 final size:28
Alignment explanation
Indices: 51525022--51525098 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
51525012 TACTGGTTAT
* *
51525022 TGTATTGGGCTAAGGCCCATATTATTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51525050 TGTATTGGACTAAGGCCCACATTGCTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51525078 CGTTTTGGGCTAAGGCCCACA
1 TGTATTGGGCTAAGGCCCACA
51525099 CTGTACTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACATTACTAC
Found at i:51527639 original size:20 final size:20
Alignment explanation
Indices: 51527616--51527657 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51527606 CTCGGGTCTG
51527616 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51527636 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51527656 AT
1 AT
51527658 TTTGATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCGATGTTCCTCACACTCT
Found at i:51528331 original size:10 final size:10
Alignment explanation
Indices: 51528282--51528337 Score: 60
Period size: 10 Copynumber: 5.3 Consensus size: 10
51528272 TTTAAATTTT
51528282 AAAAATTATTA
1 AAAAATTA-TA
51528293 AAAAATTATA
1 AAAAATTATA
51528303 AACAAACTTCATA
1 AA-AAA-TT-ATA
51528316 AAAAATTATA
1 AAAAATTATA
*
51528326 ACAAATT-TA
1 AAAAATTATA
51528335 AAA
1 AAA
51528338 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 4 0.10
10 13 0.32
11 13 0.32
12 5 0.12
13 5 0.12
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:51535003 original size:26 final size:27
Alignment explanation
Indices: 51534974--51535035 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
51534964 GGGAATGGCC
51534974 GAAATACCCCCA-AGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
51535000 GAAATA-CCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
**
51535026 GTTATACCCC
1 GAAATACCCC
51535036 TAGGAGATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 5 0.16
26 24 0.75
27 3 0.09
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACT
Found at i:51535056 original size:27 final size:26
Alignment explanation
Indices: 51534981--51535058 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
51534971 GCCGAAATAC
* **
51534981 CCCCA-AGGGTAAAATGACTGAAATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51535006 CCCCATAGGGTAAAATGACTGTTATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51535032 CCCC-TAGGAGATAAAATTACCGTTATA
1 CCCCATAGG-G-TAAAATGACCGTTATA
51535059 GCCTTATGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.20
26 23 0.50
27 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (26 bp):
CCCCATAGGGTAAAATGACCGTTATA
Found at i:51535401 original size:28 final size:28
Alignment explanation
Indices: 51535368--51535444 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
51535358 TACTGGTTAT
* *
51535368 TGTATTGGGCTAAGGCCCATATTATTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51535396 TGTATTGGACTAAGGCCCACATTGCTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51535424 CGTTTTGGGCTAAGGCCCACA
1 TGTATTGGGCTAAGGCCCACA
51535445 CTGTACTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACATTACTAC
Found at i:51537985 original size:20 final size:20
Alignment explanation
Indices: 51537962--51538003 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51537952 CTCGGGTCTG
51537962 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51537982 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51538002 AT
1 AT
51538004 TTTGATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCGATGTTCCTCACACTCT
Found at i:51538677 original size:10 final size:10
Alignment explanation
Indices: 51538628--51538683 Score: 60
Period size: 10 Copynumber: 5.3 Consensus size: 10
51538618 TTTAAATTTT
51538628 AAAAATTATTA
1 AAAAATTA-TA
51538639 AAAAATTATA
1 AAAAATTATA
51538649 AACAAACTTCATA
1 AA-AAA-TT-ATA
51538662 AAAAATTATA
1 AAAAATTATA
*
51538672 ACAAATT-TA
1 AAAAATTATA
51538681 AAA
1 AAA
51538684 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 4 0.10
10 13 0.32
11 13 0.32
12 5 0.12
13 5 0.12
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:51545340 original size:26 final size:27
Alignment explanation
Indices: 51545311--51545372 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
51545301 GCAAATGGCC
51545311 GAAATACCCCCA-AGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
51545337 GAAATA-CCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
**
51545363 GTTATACCCC
1 GAAATACCCC
51545373 TAGGAGATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 5 0.16
26 24 0.75
27 3 0.09
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.19
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACT
Found at i:51545393 original size:27 final size:26
Alignment explanation
Indices: 51545318--51545395 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 26
51545308 GCCGAAATAC
* **
51545318 CCCCA-AGGGTAAAATGACTGAAATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51545343 CCCCATAGGGTAAAATGACTGTTATA
1 CCCCATAGGGTAAAATGACCGTTATA
*
51545369 CCCC-TAGGAGATAAAATTACCGTTATA
1 CCCCATAGG-G-TAAAATGACCGTTATA
51545396 GCCTTATGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.20
26 23 0.50
27 14 0.30
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (26 bp):
CCCCATAGGGTAAAATGACCGTTATA
Found at i:51545738 original size:28 final size:28
Alignment explanation
Indices: 51545705--51545781 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
51545695 TACTGGTTAT
* *
51545705 TGTATTGGGCTAAGGCCCATATTATTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51545733 TGTATTGGACTAAGGCCCACATTGCTAC
1 TGTATTGGGCTAAGGCCCACATTACTAC
* *
51545761 CGTTTTGGGCTAAGGCCCACA
1 TGTATTGGGCTAAGGCCCACA
51545782 CTGTACTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACATTACTAC
Found at i:51548322 original size:20 final size:20
Alignment explanation
Indices: 51548299--51548340 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51548289 CTCGGGTCTG
51548299 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51548319 ATCGATGTTCCTCACACTCT
1 ATCGATGTTCCTCACACTCT
51548339 AT
1 AT
51548341 TTTGATCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCGATGTTCCTCACACTCT
Found at i:51549014 original size:10 final size:10
Alignment explanation
Indices: 51548965--51549020 Score: 60
Period size: 10 Copynumber: 5.3 Consensus size: 10
51548955 TTTAAATTTT
51548965 AAAAATTATTA
1 AAAAATTA-TA
51548976 AAAAATTATA
1 AAAAATTATA
51548986 AACAAACTTCATA
1 AA-AAA-TT-ATA
51548999 AAAAATTATA
1 AAAAATTATA
*
51549009 ACAAATT-TA
1 AAAAATTATA
51549018 AAA
1 AAA
51549021 TTTAAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 4 0.10
10 13 0.32
11 13 0.32
12 5 0.12
13 5 0.12
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAAATTATA
Found at i:51560631 original size:22 final size:21
Alignment explanation
Indices: 51560596--51560653 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
51560586 AAAGGGTATC
* *
51560596 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
51560617 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
51560640 TGCATATCATATCT
1 TACAAATCATATCT
51560654 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:51560647 original size:17 final size:17
Alignment explanation
Indices: 51560625--51560676 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
51560615 ATTACAAAAT
51560625 CATATCTTTTAAGATTG
1 CATATCTTTTAAGATTG
*
51560642 CATATCATATCTAAGATTG
1 CATATC-T-TTTAAGATTG
* *
51560661 CATATCCTTGAAGATT
1 CATATCTTTTAAGATT
51560677 ATGTTTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 13 0.45
18 1 0.03
19 15 0.52
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (17 bp):
CATATCTTTTAAGATTG
Found at i:51565727 original size:9 final size:9
Alignment explanation
Indices: 51565713--51565737 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
51565703 GCTTTAACAA
51565713 TTGTTTATT
1 TTGTTTATT
51565722 TTGTTTATT
1 TTGTTTATT
51565731 TTGTTTA
1 TTGTTTA
51565738 ATGTACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (9 bp):
TTGTTTATT
Found at i:51570294 original size:6 final size:6
Alignment explanation
Indices: 51570242--51570292 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
51570232 AATATGTGTG
*
51570242 TTTTCT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
51570289 TTTT
1 TTTT
51570293 TTGCAATCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 5 0.11
6 39 0.89
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:51571280 original size:20 final size:20
Alignment explanation
Indices: 51571244--51571282 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51571234 GCTTCTTAAC
*
51571244 AATGAAGAAACGGTGAAGAG
1 AATGAAGAAACGATGAAGAG
51571264 AATGAAAGAAA-GATGAAGA
1 AATG-AAGAAACGATGAAGA
51571283 TGGCCACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.56, C:0.03, G:0.31, T:0.10
Consensus pattern (20 bp):
AATGAAGAAACGATGAAGAG
Found at i:51573891 original size:11 final size:11
Alignment explanation
Indices: 51573818--51573893 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
51573808 ATTTCAAAAA
*
51573818 TAATATTATTT
1 TAATATTAATT
51573829 TAATAATTTAATAT
1 TAAT-A-TTAAT-T
51573843 TAA-ATTTAATT
1 TAATA-TTAATT
*
51573854 TAATACTAATCT
1 TAATATTAAT-T
*
51573866 TAATAAT-ATT
1 TAATATTAATT
51573876 T--TATTAATT
1 TAATATTAATT
51573885 TAATATTAA
1 TAATATTAA
51573894 AGTGATTATC
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 2 0.04
11 20 0.38
12 16 0.30
13 4 0.08
14 4 0.08
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TAATATTAATT
Found at i:51573901 original size:20 final size:18
Alignment explanation
Indices: 51573832--51573928 Score: 75
Period size: 17 Copynumber: 5.7 Consensus size: 18
51573822 ATTATTTTAA
51573832 TAATTTAATATTAAAT-T
1 TAATTTAATATTAAATAT
* *
51573849 TAATTTAATACT-AATCT
1 TAATTTAATATTAAATAT
*
51573866 TAA--TAATATT--TTAT
1 TAATTTAATATTAAATAT
51573880 TAATTTAATATTAAAGTGAT
1 TAATTTAATATTAAA-T-AT
*
51573900 T-ATCTTAATATTCAAT-T
1 TAAT-TTAATATTAAATAT
51573917 TAATTTAATATT
1 TAATTTAATATT
51573929 TATCTTGTTG
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
14 5 0.08
15 6 0.09
16 10 0.15
17 25 0.38
18 2 0.03
19 4 0.06
20 13 0.20
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (18 bp):
TAATTTAATATTAAATAT
Found at i:51573990 original size:18 final size:17
Alignment explanation
Indices: 51573969--51574004 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
51573959 ATAAGATTTA
51573969 ATATTAAATATAAATATT
1 ATATTAAAT-TAAATATT
*
51573987 ATATTAAATTTAATATT
1 ATATTAAATTAAATATT
51574004 A
1 A
51574005 AAGTGATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATTAAATTAAATATT
Found at i:51583636 original size:39 final size:40
Alignment explanation
Indices: 51583593--51583696 Score: 105
Period size: 37 Copynumber: 2.7 Consensus size: 40
51583583 CTATTCCAAA
*
51583593 AATAATATTATTTTAATAGTTTAATATTAAATTTAAT-TT
1 AATAATATTATCTTAATAGTTTAATATTAAATTTAATATT
*
51583632 AAT-A-ATTATCTTAATAGTATT-TTATT-AATTTAATATT
1 AATAATATTATCTTAATAGT-TTAATATTAAATTTAATATT
* *
51583669 AA-ATTAATTATCTTAATA-TTAAATATTA
1 AATAAT-ATTATCTTAATAGTTTAATATTA
51583697 TTTAATGTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
36 8 0.15
37 22 0.42
38 8 0.15
39 15 0.28
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (40 bp):
AATAATATTATCTTAATAGTTTAATATTAAATTTAATATT
Found at i:51583684 original size:20 final size:20
Alignment explanation
Indices: 51583634--51583692 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
51583624 TTTAATTTAA
* *
51583634 TAATTATCTTAATAGT-ATT
1 TAATTATCTTAATATTAAAT
*
51583653 TTATTAAT-TTAATATTAAAT
1 TAATT-ATCTTAATATTAAAT
51583673 TAATTATCTTAATATTAAAT
1 TAATTATCTTAATATTAAAT
51583693 ATTATTTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (20 bp):
TAATTATCTTAATATTAAAT
Found at i:51587937 original size:16 final size:16
Alignment explanation
Indices: 51587890--51587938 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
51587880 CGCTGTATTG
* *
51587890 GAATAGAGGCGTAATG
1 GAATAAAGGCGTAATA
* *
51587906 GAATAAATGTGTAATA
1 GAATAAAGGCGTAATA
51587922 GAATAAAGGCGTAATA
1 GAATAAAGGCGTAATA
51587938 G
1 G
51587939 CAAATCAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.45, C:0.04, G:0.29, T:0.22
Consensus pattern (16 bp):
GAATAAAGGCGTAATA
Found at i:51594425 original size:33 final size:33
Alignment explanation
Indices: 51594378--51594445 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
51594368 GCGTGTGGAG
51594378 AACTATGAGAAACAGAGGGAGCAAATC-GTCAGA
1 AACTATGAGAAACAGAGGGAGCAAATCAG-CAGA
*
51594411 AACTGTGAGAAACAGAGGGAGCAAATCAGCAGA
1 AACTATGAGAAACAGAGGGAGCAAATCAGCAGA
51594444 AA
1 AA
51594446 AGAAAAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.28, T:0.10
Consensus pattern (33 bp):
AACTATGAGAAACAGAGGGAGCAAATCAGCAGA
Found at i:51597787 original size:21 final size:21
Alignment explanation
Indices: 51597763--51597812 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
51597753 TTCTGCTTTG
*
51597763 CTCTGCTTCCCTCGTTGCTGC
1 CTCTGCTTCCCTCGTCGCTGC
*
51597784 CTCTGCTTCCCTCGTCGTTGC
1 CTCTGCTTCCCTCGTCGCTGC
*
51597805 CTCCGCTT
1 CTCTGCTT
51597813 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.44, G:0.18, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTCGTCGCTGC
Found at i:51600336 original size:25 final size:26
Alignment explanation
Indices: 51600303--51600362 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
51600293 CCCGGCCCAT
* * *
51600303 TTTTAAAAT-AAACATTAAAAAATTA
1 TTTTAAAATAAAAAATAAAAAAAATA
51600328 TTTTAAAATAAAAAAATAAAAAAAATA
1 TTTTAAAAT-AAAAAATAAAAAAAATA
51600355 TTTTAAAA
1 TTTTAAAA
51600363 GTATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 9 0.30
27 21 0.70
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
TTTTAAAATAAAAAATAAAAAAAATA
Found at i:51604203 original size:3 final size:3
Alignment explanation
Indices: 51604186--51604248 Score: 56
Period size: 3 Copynumber: 21.0 Consensus size: 3
51604176 TAATTACTCA
* * * *
51604186 ATT ATT -TT CATT ATT ATT GTT ATT ATT ATT ATT AAT GTT ATT ATA
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
51604231 ACT ATT AGT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
51604249 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:51604228 original size:18 final size:18
Alignment explanation
Indices: 51604195--51604248 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
51604185 AATTATTTTC
*
51604195 ATTATTATTGTTATTATT
1 ATTATTAATGTTATTATT
*
51604213 ATTATTAATGTTATTATA
1 ATTATTAATGTTATTATT
* * *
51604231 ACTATTAGTATTATTATT
1 ATTATTAATGTTATTATT
51604249 NNNNNNNNNN
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (18 bp):
ATTATTAATGTTATTATT
Found at i:51604978 original size:106 final size:109
Alignment explanation
Indices: 51604832--51605037 Score: 328
Period size: 107 Copynumber: 1.9 Consensus size: 109
51604822 GCAAAACCTT
* * *
51604832 TTTCATTTTGAACAAAAACGACACCGTTTTGCTATTCT-AAATTTTTTTATTTTGTTTTTTATAA
1 TTTCATTTTGAACAAAAACGACACCGTTTTGCTATGCTAAAACTTTTTTATTTTATTTTTTATAA
* *
51604896 TTTGGTTTA-TTTTTTGCGGCGTTTTTATAAAAAAAAACCACTA
66 ATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAAAAACCACTA
*
51604939 TTTCATTTTGAAC-AAAATGACACCGTTTTGCTATGCTAAAACTTTTTTATTTTATTTTTTATAA
1 TTTCATTTTGAACAAAAACGACACCGTTTTGCTATGCTAAAACTTTTTTATTTTATTTTTTATAA
*
51605003 ATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAA
66 ATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAA
51605038 CGCCGCTGTT
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
106 22 0.24
107 44 0.49
108 24 0.27
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.50
Consensus pattern (109 bp):
TTTCATTTTGAACAAAAACGACACCGTTTTGCTATGCTAAAACTTTTTTATTTTATTTTTTATAA
ATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAAAAACCACTA
Found at i:51605213 original size:106 final size:106
Alignment explanation
Indices: 51605081--51605294 Score: 333
Period size: 106 Copynumber: 2.0 Consensus size: 106
51605071 CGCAAATTTT
* *
51605081 TTTCATTTTGAACAAAACGACGCCGTTTTGCTAT-TCTAAAAATTTTTATTTTGTTTTTTATAAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGT-TAAAAATTTTTATTTTGTTTTTTAAAAA
* *
51605145 TTGGTTTA-TTTTTTGCGGCGTTTTTATAAAAAAATGCCGCTA
65 TTGATTTATTTTTTTGCGGCGTTTTTAT-AAAAAACGCCGCTA
* *
51605187 TTTCATTTTTAACAAAATGACACCGTTTTGCTATGTTAAAAATTTTTATTTTGTTTTTTAAAAAT
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGTTAAAAATTTTTATTTTGTTTTTTAAAAAT
*
51605252 TGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTA
66 TGATTTATTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
51605293 TT
1 TT
51605295 GCTTACCTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
106 80 0.81
107 19 0.19
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (106 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTATGTTAAAAATTTTTATTTTGTTTTTTAAAAAT
TGATTTATTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
Found at i:51605465 original size:107 final size:105
Alignment explanation
Indices: 51605329--51605521 Score: 314
Period size: 107 Copynumber: 1.8 Consensus size: 105
51605319 GCAAGACTTT
* * * *
51605329 TTTCATTTTGAACAAAACGACGCCTTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTTATAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAA-TTTTTATTTT-ATTTTTTATAA
*
51605394 ATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAATGCCGCTA
64 ATTGATTTATTTTTTGCGGCGTTTTTATAAAAAATGCCGCTA
*
51605436 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT
51605501 TGATTTATTTTTTGCGGCGTT
66 TGATTTATTTTTTGCGGCGTT
51605522 ATTGCTTACC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
105 32 0.40
106 10 0.12
107 38 0.47
ACGTcount: A:0.26, C:0.11, G:0.12, T:0.50
Consensus pattern (105 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT
TGATTTATTTTTTGCGGCGTTTTTATAAAAAATGCCGCTA
Found at i:51605482 original size:249 final size:249
Alignment explanation
Indices: 51604732--51605625 Score: 1169
Period size: 248 Copynumber: 3.6 Consensus size: 249
51604722 AAAATGGCAC
* *
51604732 TATTTTTT-TAAAGTGAAATTA-TTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACC
1 TATTTTTTATAAATTG-ATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACC
* *
51604795 TTTAGCGGCGTTTTGCATAAAAACGCCGCAAAACCTTTTTCATTTTGAACAAAAACGACACCGTT
65 TTTAGCGGCGTTTT---T----A---CGC-AAACTTTTTTCATTTTGAACAAAAACGACGCCGTT
* *
51604860 TTGCTATTCT-AAATTTTTTTATTTTGTTTTTTATAATTTGGTTTATTTTTTGCGGCGTTTTTAT
119 TTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTAT
** * *
51604924 AAAAAAAAACCACTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAACTTTTTTAT
184 AAAAAAATGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAA-ATTTTTAT
51604989 TT
248 TT
*
51604991 TATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTGTTGCTTACCT
1 TATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACCT
********** *
51605056 TTAGCATAAAAACGCCGCAAATTTTTTTCATTTTGAAC-AAAACGACGCCGTTTTGCTATTCTAA
66 TTAGCGGCGTTTTTACGCAAACTTTTTTCATTTTGAACAAAAACGACGCCGTTTTGCTATTCTAA
51605120 AAA-TTTTTATTTTGTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAAATGCCG
131 AAATTTTTTATTTTGTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAAATGCCG
* *
51605184 CTATTTCATTTTTAACAAAATGACACCGTTTTGCTATGTTAAAAATTTTTATTT
196 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTT
* *
51605238 TGTTTTTTAAAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACCT
1 TATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACCT
* *
51605303 TTAGCGGCGTTTTTATGCAAGACTTTTTTCATTTTGAAC-AAAACGACGCCTTTTTGCTATTCTA
66 TTAGCGGCGTTTTTACGCAA-ACTTTTTTCATTTTGAACAAAAACGACGCCGTTTTGCTATTCTA
51605367 AAAATTTTTTATTTTGTTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTAT-AAAAAATGC
130 AAAATTTTTTATTTTG-TTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAAATGC
51605431 CGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTT
194 CGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTT
*
51605487 TATTTTTTATAAATTGATTTA--TTTTT-T-GCG--------------G-CGTTATTGCTTACCT
1 TATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACCT
* *
51605533 TTAGCGGCGTTTTT--GCAAATTTTTTTTCATTTTGAACAAAAACAACGCCGTTTTGCTATTCTA
66 TTAGCGGCGTTTTTACGCAAA-CTTTTTTCATTTTGAACAAAAACGACGCCGTTTTGCTATTCTA
51605596 AAAATTTTTTATTTTGTTTTTTATAAATTG
130 AAAATTTTTTATTTTGTTTTTTATAAATTG
51605626 NNNNNNNNNN
Statistics
Matches: 579, Mismatches: 48, Indels: 47
0.86 0.07 0.07
Matches are distributed among these distances:
227 1 0.00
228 34 0.06
229 39 0.07
230 28 0.05
231 1 0.00
245 3 0.01
246 1 0.00
247 85 0.15
248 167 0.29
249 114 0.20
250 41 0.07
259 12 0.02
260 53 0.09
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47
Consensus pattern (249 bp):
TATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAACGCCGCTATTGCTTACCT
TTAGCGGCGTTTTTACGCAAACTTTTTTCATTTTGAACAAAAACGACGCCGTTTTGCTATTCTAA
AAATTTTTTATTTTGTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAAATGCCG
CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTT
Found at i:51611998 original size:106 final size:108
Alignment explanation
Indices: 51611878--51612093 Score: 319
Period size: 107 Copynumber: 2.0 Consensus size: 108
51611868 GCAAAACTTT
* * * *
51611878 TTTCATTTCGAACAAAACGACGCC-GTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAA
1 TTTCATTTCGAACAAAACGACACCAGTTTGATATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* * *
51611942 TTGATTTATTTTTTGCGGCGTTTTTAT-AAAAAAACTCCGCTA
66 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCTA
* * * *
51611984 TTTCATTTTGAACAAAATGACACCATTTTGATATGCTAAATATTTTTTATTTTATTTTTTATAAA
1 TTTCATTTCGAACAAAACGACACCAGTTTGATATGCTAAAAATTTTTTATTTTATTTTTTATAAA
51612049 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCTA
66 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCTA
51612092 TT
1 TT
51612094 GCTTACCTTT
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
106 21 0.22
107 60 0.62
108 16 0.16
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.47
Consensus pattern (108 bp):
TTTCATTTCGAACAAAACGACACCAGTTTGATATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGATTTAATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCTA
Found at i:51612278 original size:257 final size:256
Alignment explanation
Indices: 51611856--51612588 Score: 1041
Period size: 258 Copynumber: 2.8 Consensus size: 256
51611846 TTACCTTTAG
* ** * * *
51611856 CATAAAAACGCCGCAAAACTTTTTTCATTTCGAACAAAACGACGCCG-TTTGCTATTCTAAAAAT
1 CATAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAACAATGCCGTTTTGCTATTCT-AAAAT
*
51611920 TTTTTATTTTGTTTTTTATAAATT-GATTTATTTTTTGCGGCGTTTTTATAAAAAAACTCCGCTA
65 TTTTTATTTTGTTTTTTATAAATTAG-TTTATTTTTTGCGGCGTTTTTAT-AAAAAACGCCGCTA
** * *
51611984 TTTCATTTTGAACAAAATGACACCATTTTGATATGCTAAATATTTTTTATTTTATTTTTTATAAA
128 TTTCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* *
51612049 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTG
193 TTGATTTAATTTTTGAGGCGTTTTTAT--AAAAAACACCGCTATTGCTTACCTTTAGCAGCGTT-
51612114 TT
255 TT
* *
51612116 CATAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAACAATGTCGTTTTGCTAGTCT-AAATT
1 CATAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAACAATGCCGTTTTGCTATTCTAAAATT
* *
51612180 TTTT-TTAT-TTTTTTATAAATTAGTTTATTTTTTTGCGGCGTTTTTATAAAAACCGCCGCTATT
66 TTTTATTTTGTTTTTTATAAATTAGTTTA-TTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATT
* * *
51612243 TCATTTTGAGCCAAATGACACTGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTATAAATT
130 TCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATT
*
51612308 GATTTAATTTTTGCA-GCGATTTTATAAAAAACACCGCTATTGCTTACCTTTAGCAGCGTTTT
195 GATTTAATTTTTG-AGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCAGCGTTTT
**
51612370 CATTAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAA-TGTCGCCGTTTTGCTATTCTAAAA
1 CA-TAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAACAAT-GCCGTTTTGCTATTCTAAAA
*
51612434 TTTTTTTATTTTGTTTTTTATAAAGTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
64 -TTTTTTATTTTGTTTTTTATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
* * *
51612499 TTTCATTTTGAACAAAATGACACTGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAA
128 TTTCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* *
51612564 TT-AGTTTATTTTTTGCGGCGTTTTT
193 TTGA-TTTAATTTTTGAGGCGTTTTT
51612589 GAACAAAATG
Statistics
Matches: 424, Mismatches: 37, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
254 5 0.01
255 84 0.20
256 3 0.01
257 118 0.28
258 137 0.32
259 27 0.06
260 40 0.09
261 10 0.02
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (256 bp):
CATAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAACAATGCCGTTTTGCTATTCTAAAATT
TTTTATTTTGTTTTTTATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTT
CATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTG
ATTTAATTTTTGAGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCAGCGTTTT
Found at i:51612514 original size:106 final size:106
Alignment explanation
Indices: 51612393--51612588 Score: 320
Period size: 106 Copynumber: 1.8 Consensus size: 106
51612383 GCAAATTTTT
* * * * *
51612393 TTTCATTTTGAACAAAATGTCGCCGTTTTGCTATTCTAAAATTTTTTTATTTTGTTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATAAA
51612458 GTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
66 GTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
* *
51612499 TTTCATTTTGAACAAAATGACACTGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAA
1 TTTCATTTTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATAAA
*
51612564 TTAGTTTATTTTTTGCGGCGTTTTT
66 GTAGTTTATTTTTTGCGGCGTTTTT
51612589 GAACAAAATG
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 82 1.00
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.52
Consensus pattern (106 bp):
TTTCATTTTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATAAA
GTAGTTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
Found at i:51612602 original size:81 final size:82
Alignment explanation
Indices: 51612504--51612779 Score: 285
Period size: 81 Copynumber: 3.4 Consensus size: 82
51612494 CGCTATTTCA
* *
51612504 TTTTGAACAAAATGACACTG-TTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAG
1 TTTTGAACAAAATGACACCGTTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAG
51612568 TTTATTTTTTGCGGCGT
66 TTTATTTTTTGCGGCGT
* *
51612585 TTTTGAACAAAATGACACCGTTTTTGCTATGCT----A------A-TTT-TTTTATATAAATT-G
1 TTTTGAACAAAATGACACCGTTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAG
51612637 ATTTATTTTTTGCGGCGTTTT
66 -TTTATTTTTTGCGGCG---T
* *
51612658 TATAAAAATTGAACAAAATGACTCCG-TTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATG
1 T-T-----TTGAACAAAATGACACCGTTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTTATG
51612722 AATTAGTTTATTTTTTGCGGCGT
60 AATTAGTTTATTTTTTGCGGCGT
* *
51612745 TTTTGAACAAAATGACATCGTTTTTCCTATGCTAA
1 TTTTGAACAAAATGACACCGTTTTTGCTATGCTAA
51612780 TTTTTTTTAT
Statistics
Matches: 158, Mismatches: 12, Indels: 49
0.72 0.05 0.22
Matches are distributed among these distances:
69 1 0.01
70 27 0.17
71 3 0.02
72 1 0.01
73 2 0.01
74 1 0.01
78 12 0.08
79 17 0.11
81 35 0.22
82 24 0.15
86 1 0.01
87 2 0.01
88 1 0.01
89 3 0.02
90 27 0.17
91 1 0.01
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (82 bp):
TTTTGAACAAAATGACACCGTTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAG
TTTATTTTTTGCGGCGT
Found at i:51612700 original size:160 final size:159
Alignment explanation
Indices: 51612506--51612824 Score: 550
Period size: 160 Copynumber: 2.0 Consensus size: 159
51612496 CTATTTCATT
*
51612506 TTGAACAAAATGACACTGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAGTTT
1 TTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAGTTT
* *
51612571 ATTTTTTGCGGCGTTTTTGAACAAAATGACACCGTTTTTGCTATGCTAATTTTTTTATATAAATT
66 ATTTTTTGCGGCGTTTTTGAACAAAATGACACCGTTTTTCCTATGCTAATTTTTTT-TATAAATC
51612636 GATTTATTTTTTGCGGCG-TTTTTATAAAAA
130 GATTTA-TTTTTGCGGCGTTTTTTATAAAAA
* * *
51612666 TTGAACAAAATGACTCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATGAATTAGTTT
1 TTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAGTTT
*
51612731 ATTTTTTGCGGCGTTTTTGAACAAAATGACATCGTTTTTCCTATGCTAATTTTTTTTATAAATCG
66 ATTTTTTGCGGCGTTTTTGAACAAAATGACACCGTTTTTCCTATGCTAATTTTTTTTATAAATCG
51612796 ATTTATTTTTGCGGCGTTTTTTATAAAAA
131 ATTTATTTTTGCGGCGTTTTTTATAAAAA
51612825 ACACCGCTAT
Statistics
Matches: 151, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
158 11 0.07
159 25 0.17
160 115 0.76
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (159 bp):
TTGAACAAAATGACACCGTTTTACTATGCTAAAAATTTTTTATTTTGTTTTTTATGAATTAGTTT
ATTTTTTGCGGCGTTTTTGAACAAAATGACACCGTTTTTCCTATGCTAATTTTTTTTATAAATCG
ATTTATTTTTGCGGCGTTTTTTATAAAAA
Found at i:51613045 original size:104 final size:107
Alignment explanation
Indices: 51612876--51613091 Score: 314
Period size: 106 Copynumber: 2.0 Consensus size: 107
51612866 CCGCAAAAAT
* * *
51612876 TATTTCATTTTGAACAAAACGACGCCTTTCTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATA
1 TATTTCATTTTGAACAAAACGACACCTTTCTGCTATGCT-AAAATTTTTTATTTTATTTTTTATA
* *
51612941 AATTGGTTTA-TTTTTTGCGGCGTTTTT-TATAAAAACGCCGC
65 AATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAAACGCCGC
* *
51612982 TATTTCATTTTGAACAAAATGACACCGTTT-TGTTATGCT-AAATTTTTTATTTTATTTTTTATA
1 TATTTCATTTTGAACAAAACGACACC-TTTCTGCTATGCTAAAATTTTTTATTTTATTTTTTATA
*
51613045 AATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAAACGCCGC
65 AATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAAACGCCGC
51613088 TATT
1 TATT
51613092 GCTTACCTTT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
104 32 0.32
105 16 0.16
106 48 0.48
107 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (107 bp):
TATTTCATTTTGAACAAAACGACACCTTTCTGCTATGCTAAAATTTTTTATTTTATTTTTTATAA
ATTGATTTATTTTTTTGCGGCGTTTTTATAAAAAAACGCCGC
Found at i:51613239 original size:104 final size:106
Alignment explanation
Indices: 51613126--51613337 Score: 284
Period size: 104 Copynumber: 2.0 Consensus size: 106
51613116 GTAAAACTTT
* * * * * * *
51613126 TTTCATTTTGAACAAAACGACGCCGTTTTGTTATTCTAAAAATTTTTTATTTTGTTTTGTATAAA
1 TTTCATTTTGAACAAAACGACACCATTTTGCTATGCTAAAAAATTTTTATTTTATTTTGTAGAAA
* * *
51613191 TTGGTTTTTTTTTTGCGGCGTCT-T-TAAAAAACGCCGCTA
66 TTGATTTATTTTTTGCGGCGTCTGTATAAAAAACACCGCTA
* * *
51613230 TTTCATTTTGAACAAAATGACACCATTTTGCTGTGCTAAAAAATTTTTATTTTATTTTTTAGAAA
1 TTTCATTTTGAACAAAACGACACCATTTTGCTATGCTAAAAAATTTTTATTTTATTTTGTAGAAA
*
51613295 TTGATTTATTTTTTGTGGCGTCTGTATAAAAAACACCGCTA
66 TTGATTTATTTTTTGCGGCGTCTGTATAAAAAACACCGCTA
51613336 TT
1 TT
51613338 GCTTACCTTT
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 75 0.82
105 1 0.01
106 16 0.17
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (106 bp):
TTTCATTTTGAACAAAACGACACCATTTTGCTATGCTAAAAAATTTTTATTTTATTTTGTAGAAA
TTGATTTATTTTTTGCGGCGTCTGTATAAAAAACACCGCTA
Found at i:51613540 original size:106 final size:107
Alignment explanation
Indices: 51613382--51613596 Score: 283
Period size: 106 Copynumber: 2.0 Consensus size: 107
51613372 GCAAAATTTT
** * * *
51613382 TTTCATTTTGAACAAAACGACGTCGTTTTTCTAGTCTAAAATTTTTTTATTTTCTTCTTTATAAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTAGTCTAAAAATTTTTTATTTTATTCTTTATAAA
* * * *
51613447 TT-AGTTTATTTTTTGCGGCGTTTTTAT-AAAAACCGCCGCTA
66 TTGA-TTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTA
* * *
51613488 TTTCATTTTGAACCAAATGACACCGTTTTGCTA-TGCTAAAAATTTTTTATTTTATTTTTTATAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTAGT-CTAAAAATTTTTTATTTTATTCTTTATAA
51613552 ATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTA
65 ATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTA
51613595 TT
1 TT
51613597 GCTTACCTTT
Statistics
Matches: 94, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
105 1 0.01
106 77 0.82
107 16 0.17
ACGTcount: A:0.28, C:0.13, G:0.11, T:0.47
Consensus pattern (107 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTAGTCTAAAAATTTTTTATTTTATTCTTTATAAA
TTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTA
Found at i:51613583 original size:258 final size:254
Alignment explanation
Indices: 51612782--51613724 Score: 1322
Period size: 258 Copynumber: 3.7 Consensus size: 254
51612772 TATGCTAATT
* *
51612782 TTTTTTATAAATCGATTT-ATTTTTGCGGCGTTTTT-TATAAAAAACACCGCTATTGCTTACCTT
1 TTTTTTATAAATTGATTTAATTTTTGTGGCGTTTTTATA-AAAAAACACCGCTATTGCTTACCTT
* * *
51612845 TGGCGGCGTTTATGAAAAACGCCGCAAAAATTATTTCATTTTGAACAAAACGACGCCTTTCTGCT
65 TAGCGGCGTTTATGAAAAACGCCGC-AAAATTTTTTCATTTTGAACAAAACGACGCGTTT-TGCT
* *
51612910 ATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTTATAAAA
128 ATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTGCGGCG-TTTTTATAAAA
*
51612975 ACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGTTATGCT--AAATTTTTTATTTTA
192 ACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA
* *
51613036 TTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAAACGCCGCTATTGCTTACCTT
1 TTTTTTATAAATTGATTTA-ATTTTTGTGGCGTTTTTATAAAAAAACACCGCTATTGCTTACCTT
* *
51613101 TA---GC----AT-AAAAACGCCGTAAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGTT
65 TAGCGGCGTTTATGAAAAACGCCGCAAAA-TTTTTTCATTTTGAACAAAACGACG-CGTTTTGCT
* * *
51613158 ATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTTGCGGCGTCTTTA-AAAAA
128 ATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAAAA
* * *
51613222 CGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTGTGCTAAAAAATTTTTATTTTA
193 CGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA
* * * *
51613284 TTTTTTAGAAATTGATTTATTTTTTGTGGCGTCTGTAT-AAAAAACACCGCTATTGCTTACCTTT
1 TTTTTTATAAATTGATTTAATTTTTGTGGCGTTTTTATAAAAAAACACCGCTATTGCTTACCTTT
* *
51613348 AGCGGCGTTTTTATGAACAACGCCGCAAAATTTTTTTCATTTTGAACAAAACGACGTCGTTTTTC
66 AGCGGCG--TTTATGAAAAACGCCGCAAAA-TTTTTTCATTTTGAACAAAACGACG-CGTTTTGC
* * *
51613413 TAGTCTAAAATTTTTTTATTTTCTTCTT-TATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAA
127 TATTCTAAAAATTTTTTATTTTGTT-TTGTATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAA
*
51613477 AACCGCCGCTATTTCATTTTGAACCAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA
191 AA-CGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA
* * *
51613542 TTTTTTATAAATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTT
1 TTTTTTATAAATTGATTTAATTTTTGTGGCGTTTTTATAAAAAAACACCGCTATTGCTTACCTTT
* * *
51613607 AGCGGCGTTTTTATGAACAACGCCGCAAAATTTTTTCATTTTGGACAAAACGACGACGTTTCGCT
66 AGCGGCG--TTTATGAAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACG-CGTTTTGCT
*
51613672 ATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTTCGGCG
128 ATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTGCGGCG
51613725 ATGACACCGT
Statistics
Matches: 616, Mismatches: 51, Indels: 40
0.87 0.07 0.06
Matches are distributed among these distances:
246 73 0.12
247 26 0.04
248 120 0.19
249 8 0.01
253 2 0.00
254 17 0.03
255 2 0.00
256 135 0.22
257 11 0.02
258 167 0.27
259 55 0.09
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (254 bp):
TTTTTTATAAATTGATTTAATTTTTGTGGCGTTTTTATAAAAAAACACCGCTATTGCTTACCTTT
AGCGGCGTTTATGAAAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCGTTTTGCTATT
CTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTGCGGCGTTTTTATAAAAACGC
CGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTA
Found at i:51613742 original size:69 final size:70
Alignment explanation
Indices: 51613663--51613794 Score: 178
Period size: 70 Copynumber: 1.9 Consensus size: 70
51613653 AAAACGACGA
* * * * *
51613663 CGTTTCGCTATTCT-AAAAATTTTTTATTTTGTTTTGTATAAATT-AGTTTATTTTTTTCGGCGA
1 CGTTTCGCTATGCTAAAAAAATTTTTAGTTTATTTTGTATAAATTGA-TTTATTTTTTGCGGCGA
51613726 TGACAC
65 TGACAC
* *
51613732 CGTTTTGCTATGCTAAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTGCGGCG
1 CGTTTCGCTATGCTAAAAAAATTTTTAGTTTATTTTGTATAAATTGATTTATTTTTTGCGGCG
51613795 TTTTTATAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
69 12 0.22
70 41 0.76
71 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (70 bp):
CGTTTCGCTATGCTAAAAAAATTTTTAGTTTATTTTGTATAAATTGATTTATTTTTTGCGGCGAT
GACAC
Found at i:51613799 original size:222 final size:221
Alignment explanation
Indices: 51613504--51613939 Score: 689
Period size: 222 Copynumber: 2.0 Consensus size: 221
51613494 TTTGAACCAA
* *
51613504 ATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGA
1 ATGACACCGTTTTGCTATGCTAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTAATTTTTGA
* *
51613569 GACGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTT-ATGAACAACGCCGC
66 GACGTTTTTAT-AAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCAT-AAAAACGCCGC
* *
51613633 AAAA-TTTTTTCATTTTGGACAAAACGACGACGTT-TCGCTATTCTAAAAATTTTTTATTTTGTT
129 AAAATTTTTTTCATTTTGAACAAAACGAAGACGTTCT-GCTATTCTAAAAATTTTTTATTTTGTT
51613696 TTGTATAAATTAGTTTATTTTTTTCGGCG
193 TTGTATAAATTAGTTTATTTTTTTCGGCG
*
51613725 ATGACACCGTTTTGCTATGCTAAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTG
1 ATGACACCGTTTTGCTATGCT-AAAAAATTTTTAGTTTATTTTTTATAAATTGATTTAATTTTTG
* * *
51613790 CGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCTGCA
65 AGACGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCCGCA
* *
51613855 AAATTTTTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAATTTTTTTATTTTGTTTT
130 AAATTTTTTTCATTTTGAACAAAACGAAGACGTTCTGCTATTCTAAAAATTTTTTATTTTGTTTT
* *
51613920 TTATAAATTGGTTTATTTTT
195 GTATAAATTAGTTTATTTTT
51613940 AAAAAACACC
Statistics
Matches: 197, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
221 71 0.36
222 125 0.63
223 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (221 bp):
ATGACACCGTTTTGCTATGCTAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTAATTTTTGA
GACGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCCGCAA
AATTTTTTTCATTTTGAACAAAACGAAGACGTTCTGCTATTCTAAAAATTTTTTATTTTGTTTTG
TATAAATTAGTTTATTTTTTTCGGCG
Found at i:51613980 original size:92 final size:93
Alignment explanation
Indices: 51613862--51614032 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
51613852 GCAAAATTTT
* *
51613862 TTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCT-AAAATTTTTTTATTTTGTTTTTTATAA
1 TTTCATTTTGAACAAAACGAAGCCGTTCTGCTATGCTAAAAATTTTTTTATTTTATTTTTTATAA
*
51613926 ATTGGTTTATTTTTAAAAAACACCGCTA
66 ATTGATTTATTTTTAAAAAACACCGCTA
* *
51613954 TTTCATTTTGAACAAAATGACA-CCGTTTTGCTATGCTAAAAATTTTTTTATTTTATTTTTTATA
1 TTTCATTTTGAACAAAACGA-AGCCGTTCTGCTATGCTAAAAATTTTTTTATTTTATTTTTTATA
51614018 AATTGATTTATTTTT
65 AATTGATTTATTTTT
51614033 TGTGGCATTT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 32 0.44
93 40 0.56
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (93 bp):
TTTCATTTTGAACAAAACGAAGCCGTTCTGCTATGCTAAAAATTTTTTTATTTTATTTTTTATAA
ATTGATTTATTTTTAAAAAACACCGCTA
Found at i:51614232 original size:105 final size:107
Alignment explanation
Indices: 51614098--51614311 Score: 299
Period size: 105 Copynumber: 2.0 Consensus size: 107
51614088 GCAAAACTTT
* * * *
51614098 TTTCATTTTGAACGAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTGTATAAA
1 TTTCATTTTGAACGAAACGACACCATTTTGCTATGCTAAAAATTTTTTATTTTATTTTGTATAAA
*
51614163 TTGGTTT-TTTT-TTGCAGCGTTTTTATAAAAAACGCCGCTA
66 TTGATTTATTTTGTTGCAGCGTTTTTATAAAAAACGCCGCTA
* * *
51614203 TTTCATTTTGAA-GAAAATGACACCATTTTGCTATGCTAAAATTTTTTTATTTTATTTTTTATAA
1 TTTCATTTTGAACG-AAACGACACCATTTTGCTATGCTAAAAATTTTTTATTTTATTTTGTATAA
** *
51614267 ATTGATTTATTTTGTTGTGGCGTTTTTATAAAAAACGCCTCTA
65 ATTGATTTATTTTGTTGCAGCGTTTTTATAAAAAACGCCGCTA
51614310 TT
1 TT
51614312 GCTTACCTTT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
104 1 0.01
105 62 0.65
106 4 0.04
107 28 0.29
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.49
Consensus pattern (107 bp):
TTTCATTTTGAACGAAACGACACCATTTTGCTATGCTAAAAATTTTTTATTTTATTTTGTATAAA
TTGATTTATTTTGTTGCAGCGTTTTTATAAAAAACGCCGCTA
Found at i:51614417 original size:254 final size:252
Alignment explanation
Indices: 51613935--51614804 Score: 1222
Period size: 254 Copynumber: 3.4 Consensus size: 252
51613925 AATTGGTTTA
* *
51613935 TTTT-TAAAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTT
1 TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAA-TT
* * *
51613999 TTTTATTTTATTTTTTATAAATTGATTTATTTTTTGTGGCATTTTTATAAAAAAACGCCGATGTT
65 TTTTATTTTATTTTTTATAAATTGATTTATTTTTTGTGGCGTTTTTATAAAAAAACGCCGCTATT
* * * * *
51614064 GCTTACCTTTA--GC--ATAAAAACGCCGCAAAACTTTTTTCATTTTGAACGAAACGACGCCGTT
130 GCTTACCTTTAGGGCTTTTTATAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACTCCGTT
* *
51614125 TTGCTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTGCAGCGT
195 TTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTTTTTTTGCGGCGT
* *
51614183 TTTTATAAAAAACGCCGCTATTTCATTTTGAAGAAAATGACACCATTTTGCTATGCTAAAATTTT
1 TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAATTT
*
51614248 TTTATTTTATTTTTTATAAATTGATTTATTTTGTTGTGGCGTTTTTAT-AAAAAACGCCTCTATT
66 TTTATTTTATTTTTTATAAATTGATTTATTTT-TTGTGGCGTTTTTATAAAAAAACGCCGCTATT
51614312 GCTTACCTTTAGCGGCGTTTTTATAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACTCCG
130 GCTTACCTTTAG-GGC-TTTTTATAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACTCCG
*
51614377 TTTTGTTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGG-TTTTTTTTGCGGCGT
193 TTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTTTTTTTGCGGCGT
* * **
51614436 TTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACAAAATGGTACCGA-TTTGCT-TGCTAAAAA
1 TTTTAT--AAAAAACGCCGCTATTTCATTTTGAACAAAATGACACC-ATTTTGCTATGCTAAAAA
*
51614499 TTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGAT-GCGTTTTTATAAAAAAACGCCGCT
63 TTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTG-TGGCGTTTTTATAAAAAAACGCCGCT
* * *
51614563 ATTGCTTACCTTTAGTGGCCTTTTTATGAACAACGCTGCAAAATTTTTTTCATTTTAAACAAAAC
127 ATTGCTTACCTTTAG-GG-CTTTTTAT----AACGCCGCAAAACTTTTTTCATTTTGAACAAAAC
* * *
51614628 GACGT-CGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTTTATAAATTAGTTTTTTTTTGCGG
186 GAC-TCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTTTTTTTGCGG
*
51614692 CAT
250 CGT
*
51614695 TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTT
1 TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAATTT
* * * **
51614760 TTTATTTTGTTTTTGATAAATTGGTTTATTTTTTACGGCGTTTTT
66 TTTATTTTATTTTTTATAAATTGATTTATTTTTTGTGGCGTTTTT
51614805 TCTATTTCAT
Statistics
Matches: 555, Mismatches: 44, Indels: 36
0.87 0.07 0.06
Matches are distributed among these distances:
248 63 0.11
249 67 0.12
251 2 0.00
253 33 0.06
254 162 0.29
255 40 0.07
256 1 0.00
257 40 0.07
258 126 0.23
259 21 0.04
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.46
Consensus pattern (252 bp):
TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAATTT
TTTATTTTATTTTTTATAAATTGATTTATTTTTTGTGGCGTTTTTATAAAAAAACGCCGCTATTG
CTTACCTTTAGGGCTTTTTATAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACTCCGTTT
TGCTATTCTAAAAATTTTTTATTTTGTTTTTTATAAATTGGTTTTTTTTTGCGGCGT
Found at i:51614462 original size:106 final size:105
Alignment explanation
Indices: 51614352--51614565 Score: 279
Period size: 106 Copynumber: 2.0 Consensus size: 105
51614342 GCAAAACTTT
* * * * *
51614352 TTTCATTTTGAACAAAACGACT-CCGTTTTGTTATTCTAAAAATTTTTTATTTTGTTTTTTATAA
1 TTTCAGTTTGAACAAAACG-CTACCGATTTGCT-TGCTAAAAATTTTTTATTTTATTTTTTATAA
* * *
51614416 ATTGGTTT-TTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTA
64 ATTGATTTATTTTTGAGGCGTTTTTAT-AAAAAAACGCCGCTA
* *
51614458 TTTCAGTTTGAACAAAATGGTACCGATTTGCTTGCTAAAAATTTTTTATTTTATTTTTTATAAAT
1 TTTCAGTTTGAACAAAACGCTACCGATTTGCTTGCTAAAAATTTTTTATTTTATTTTTTATAAAT
*
51614523 TGATTTAATTTTTGATGCGTTTTTATAAAAAAACGCCGCTA
66 TGATTT-ATTTTTGAGGCGTTTTTATAAAAAAACGCCGCTA
51614564 TT
1 TT
51614566 GCTTACCTTT
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
105 37 0.39
106 41 0.44
107 16 0.17
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.48
Consensus pattern (105 bp):
TTTCAGTTTGAACAAAACGCTACCGATTTGCTTGCTAAAAATTTTTTATTTTATTTTTTATAAAT
TGATTTATTTTTGAGGCGTTTTTATAAAAAAACGCCGCTA
Found at i:51614724 original size:512 final size:491
Alignment explanation
Indices: 51613725--51614804 Score: 1495
Period size: 512 Copynumber: 2.2 Consensus size: 491
51613715 TTTTTCGGCG
* *
51613725 ATGACACCGTTTTGCTATGCTAAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTG
1 ATGACACCGTTTTGCTATGCT-AAAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTG
*
51613790 CGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCTGCA
65 CGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCAT--AAACGCCGCA
* *
51613855 AAATTTTTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAATTTTTTTATTTTGTTTT
128 AAACTTTTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAAATTTTTTATTTTGTTTT
* * *
51613920 TTATAAATTGGTTTATTTTTAAAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGC
193 TTATAAATTGGTTTATTTTTAAAAAAAACCGCTATTTCAGTTTGAACAAAATGACACCGATTTGC
*
51613985 TATGCTAAAAATTTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTGTGGCATTTTTATAAA
258 TATGCTAAAAATTTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGTGGCATTTTTATAAA
* * *
51614050 AAAACGCCGATGTTGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTGAACGAAA
323 AAAACGCCGATATTGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTAAACAAAA
* * *
51614115 CGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTGCAG
388 CGACGCCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTGTATAAATTAGTTTTTTTTTGCAG
* *
51614180 CGTTTTTATAAAAAACGCCGCTATTTCATTTTGAAGAAA
453 CATTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAA
* *
51614219 ATGACACCATTTTGCTATGCTAAAATTTTTTTATTTTATTTTTTATAAATTGATTTATTTTGTTG
1 ATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTT-TTG
* * *
51614284 TGGCGTTTTTATAAAAAACGCCTCTATTGCTTACCTTTAGCGGCGTTTTT-AT-AACGCCGCAAA
65 CGGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAACGCCGCAAA
** * *
51614347 ACTTTTTTCATTTTGAACAAAACGACTCCGTTTTGTTATTCTAAAAATTTTTTATTTTGTTTTTT
130 ACTTTTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAAATTTTTTATTTTGTTTTTT
*
51614412 ATAAATTGGTTTTTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACAAAATG
195 ATAAATTGG-----TTT------ATTTT-TAAAAAAAAC-C-GCTATTTCAGTTTGAACAAAATG
**
51614477 GTACCGATTTGCT-TGCTAAAAA-TTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGAT-
246 ACACCGATTTGCTATGCTAAAAATTTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTG-TG
* * * *
51614539 GCGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGTGGCCTTTTTATGAACAACGCTGCAA
310 GCATTTTTATAAAAAAACGCCGATATTGCTTACCTTTA---G-C-----AT-AAAAACGCCGCAA
* * *
51614604 AATTTTTTTCATTTTAAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTT
365 AACTTTTTTCATTTTAAACAAAACGACGCCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTG
*
51614669 TATAAATTAGTTTTTTTTTGCGGCATTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAA
430 TATAAATTAGTTTTTTTTTGCAGCATTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAA
* * * *
51614731 ATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTGATAAATTGGTTTATTTTTTAC
1 ATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTGC
51614796 GGCGTTTTT
66 GGCGTTTTT
51614805 TCTATTTCAT
Statistics
Matches: 516, Mismatches: 44, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
490 78 0.15
493 39 0.08
494 70 0.14
495 3 0.01
501 4 0.01
502 81 0.16
503 11 0.02
504 32 0.06
505 1 0.00
506 1 0.00
511 13 0.03
512 183 0.35
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.46
Consensus pattern (491 bp):
ATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTGC
GGCGTTTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAACGCCGCAAAA
CTTTTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAAATTTTTTATTTTGTTTTTTA
TAAATTGGTTTATTTTTAAAAAAAACCGCTATTTCAGTTTGAACAAAATGACACCGATTTGCTAT
GCTAAAAATTTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGTGGCATTTTTATAAAAAA
ACGCCGATATTGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTAAACAAAACGA
CGCCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTGTATAAATTAGTTTTTTTTTGCAGCAT
TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAA
Found at i:51614742 original size:105 final size:103
Alignment explanation
Indices: 51614610--51614915 Score: 332
Period size: 105 Copynumber: 3.0 Consensus size: 103
51614600 GCAAAATTTT
* * ** *
51614610 TTTCATTTTAAACAAAACGACGTCGTTTTGCTA-GTCTAAAAATTTTTTATTTTCTTTTTTATAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATG-CTAAAAATTTTTTATTTTATTTTTTATAA
*
51614674 ATTAGTTT-TTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
65 ATT-GTTTATTTTTTACGGCATTTTTATAAAAAAC-CC-CTA
* *
51614715 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTGATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
*
51614780 TTGGTTTATTTTTTACGGCGTTTTT-T---------CTA
66 TT-GTTTATTTTTTACGGCATTTTTATAAAAAACCCCTA
***
51614809 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAA-AAATTATTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
*
51614873 TTGATTTATTTTTTCCGGCATTTTTATAAAAAACACCACTA
66 TTG-TTTATTTTTTACGGCATTTTTATAAAAAAC-CC-CTA
51614914 TT
1 TT
51614916 GCTTACCTTT
Statistics
Matches: 170, Mismatches: 16, Indels: 30
0.79 0.07 0.14
Matches are distributed among these distances:
92 1 0.01
93 38 0.22
94 46 0.27
105 69 0.41
106 16 0.09
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.48
Consensus pattern (103 bp):
TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGTTTATTTTTTACGGCATTTTTATAAAAAACCCCTA
Found at i:51614825 original size:94 final size:93
Alignment explanation
Indices: 51614712--51614897 Score: 291
Period size: 94 Copynumber: 2.0 Consensus size: 93
51614702 AAAAACGCCG
*** *
51614712 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTGTTTTTGAT
1 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAA-AAATTATTTTATTTTTGAT
* *
51614777 AAATTGGTTTATTTTTTACGGCGTTTTTT
65 AAATTGATTTATTTTTTACGGCATTTTTT
*
51614806 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTATTTTATTTTTTATA
1 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTATTTTATTTTTGATA
*
51614871 AATTGATTTATTTTTTCCGGCATTTTT
66 AATTGATTTATTTTTTACGGCATTTTT
51614898 ATAAAAAACA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 39 0.46
94 45 0.54
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (93 bp):
CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTATTTTATTTTTGATA
AATTGATTTATTTTTTACGGCATTTTTT
Found at i:51614884 original size:970 final size:959
Alignment explanation
Indices: 51611962--51614692 Score: 2807
Period size: 989 Copynumber: 2.8 Consensus size: 959
51611952 TTTTGCGGCG
* * *
51611962 TTTTTATAAAAAAACTCCGCTATTTCATTTTGAACAAAATGACACCATTTTGATATGCTAAATAT
1 TTTTTAT--AAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCT-AA-AT
* * * *
51612027 TTTTTATTTTATTTTTTATAAATTGATTTA-ATTTTTGAGGCGTTTTTATAAAAAAAACGCCGCT
62 TTTTTATTTTATTTTTTATAAATTGATTTATTTTTTTGTGGCATTTTTAT-AAAAAAACGCCGAT
* **
51612091 ATTGCTTACCTTTAGCGGCGTTGTTCATAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAAC
126 ATTGCTTACCTTTA--------G--CATAAAAACGCCGCAAAACTTTTTTCATTTTGAACAAAAC
* * * * *
51612156 AATGTCGTTTTGCTAGTCT--AAATTTTTT-TTATT-TTTT-TATAAATTAGTTTATTTTTTTGC
181 GACGCCGTTTTGCTATTCTAAAAATTTTTTATT-TTGTTTTGTATAAATTGGTTT-TTTTTTTGC
* * * * **
51612216 GGCGTTTTTATAAAAACCGCCGCTATTTCATTTTGAGCCAAATGACACTGTTTTGCTATGCTAAA
244 AGCGTCTTTA-AAAAA-CGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAA
* * ** *
51612281 AAATTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGCAGCGAT-TTTATAAAAAACACCGC
307 AAATTTTTATTTTATTTTTTAGAAATTGATTTATTTTTTGTGGCG-TCTGTATAAAAAACACCGC
* * **
51612345 TATTGCTTACCTTTAGCAGCGTTTTCATTAACAACGCCGCAAATTTTTTTTCATTTTGAACAAAA
371 TATTGCTTACCTTTAGCGGCGTTTTTA-T-A-AACGCCGCAAAACTTTTTTCATTTTGAACAAAA
* * * * * * * * * *
51612410 TGTCGCCGTTTTGCTATTCTAAAATTTTTTTATTTTGTTTTTTATAAAGTAGTTTATTTTTTGCG
433 CGACGTCGTTTTTCTAGTCTAAAAATTTTTTATTTTCTTCTTTATAAATTAGGTTATTTTTTGCG
* * * *
51612475 GCGTTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACTGTTTTACTATGCTAAAA
498 GCGTTTTTATAAAAAACGCCGCTATTTCAGTTTGAACAAAATGACACCGATTTGCTATGCTAAAA
* * * * * * *
51612540 ATTTTTTATTTTGTTTTTTATGAATT-AGTTTATTTTTTGCGGCGTTTTTGA-ACAAAATGACAC
563 ATTTTTTATTTTATTTTTTATAAATTGA-TTTAATTTTTGAGACGTTTTT-ATA-AAAA-AACGC
* * * **** * * **** **** *
51612603 CGTTTTTGC-TA--TGCTA--ATTTTTTTATATAAATTGATTTATTTTTTGCGGCGTTTTTATAA
624 CGCTATTGCTTACCT-TTAGCGGCCTTTT-TATGAA--CA---A--CGCCGCAAAATTTTT-T-C
** * * ** * * * * *
51612663 AAATTGAACAAAATGACTCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTTTATGAATTAG
678 ATTTTAAACAAAACGACGACGTTTCGCTAGTCTAAAAATTTTTTATTTTCTTTTGTATAAATTAG
* *** * **** * ****** * *
51612728 TTTATTTTTTGCGGCGTTTTTGAACAAAATGAC-ATCGTTTTTCCTA-TG-CTAATTT-TTT-TT
743 TTTATTTTTTGCGGCG-ATAACACCGTTTTG-CTAT-GCTAAAAAAATTGAC-AGTTTATTTGCT
* * * *
51612788 ATAAATCGATTTAT-TTTTGCGGCGTTTTTTATAAAAAACACCGCTATTGCTTACCTTTGGCGGC
804 AAAAAT-TATTTATATTTT---G-G-TTTTTAT---AAACACCGCTATTGATTA-CTTTAGCGGC
* *** * ** * *
51612852 G--TTT-ATGAAAAACGCCGCAAAAATT-ATTTCATTTTGAACAAAACGACGCCTTTCTGCTATT
859 GTTTTTCAT-AAAAACGCTGC-AAAATTGACACCATTTTGAACAAAACAAAACCATTCTGATATT
*
51612913 CTAAAAATT-TTTTATTTTGTTTTTTATAAATTGGTTTA
922 CT-AAAATTGATTTATTTTGTTTTTTATAAATTGGTTTA
* *
51612951 TTTTTTGCGGCGTTTTTTATAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGTT
1 -------------TTTTTATAAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCT
*
51613016 ATGCTAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTTGTGGCGTTTTTATAAAAAA
53 ATGCTAAATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTTTGTGGCATTTTTATAAAAAA
* *
51613081 ACGCCGCTATTGCTTACCTTTAGCATAAAAACGCCGTAAAACTTTTTTCATTTTGAACAAAACGA
118 ACGCCGATATTGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGA
* *
51613146 CGCCGTTTTGTTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTTGCGGCG
183 CGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTTGCAGCG
*
51613211 TCTTTAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTGTGCTAAAAAATTT
248 TCTTTAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAAATTT
51613276 TTATTTTATTTTTTAGAAATTGATTTATTTTTTGTGGCGTCTGTATAAAAAACACCGCTATTGCT
313 TTATTTTATTTTTTAGAAATTGATTTATTTTTTGTGGCGTCTGTATAAAAAACACCGCTATTGCT
*
51613341 TACCTTTAGCGGCGTTTTTATGAACAACGCCGCAAAATTTTTTTCATTTTGAACAAAACGACGTC
378 TACCTTTAGCGGCGTTTTTAT--A-AACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACGTC
* *
51613406 GTTTTTCTAGTCTAAAATTTTTTTATTTTCTTCTTTATAAATTAGTTTATTTTTTGCGGCGTTTT
440 GTTTTTCTAGTCTAAAAATTTTTTATTTTCTTCTTTATAAATTAGGTTATTTTTTGCGGCGTTTT
* * * *
51613471 TATAAAAACCGCCGCTATTTCATTTTGAACCAAATGACACCGTTTTGCTATGCTAAAAATTTTTT
505 TATAAAAAACGCCGCTATTTCAGTTTGAACAAAATGACACCGATTTGCTATGCTAAAAATTTTTT
51613536 ATTTTATTTTTTATAAATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTATTGCTT
570 ATTTTATTTTTTATAAATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTATTGCTT
* **
51613601 ACCTTTAGCGGCGTTTTTATGAACAACGCCGCAAAATTTTTTCATTTTGGACAAAACGACGACGT
635 ACCTTTAGCGGCCTTTTTATGAACAACGCCGCAAAATTTTTTCATTTTAAACAAAACGACGACGT
* * * *
51613666 TTCGCTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTAGTTTATTTTTTTCGGCGATGACA
700 TTCGCTAGTCTAAAAATTTTTTATTTTCTTTTGTATAAATTAGTTTATTTTTTGCGGCGATAACA
*** ** * *
51613731 CCGTTTTGCTATGCTAAAAAAATTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTGCGGCGT
765 CCGTTTTGCTATGCTAAAAAAATTGACAGTTTATTTGCTAAAAATT-ATTTATATTTT---G-GT
* *
51613796 TTTTATAAAAAACACCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCTGCAAAATTT
825 TTTTAT---AAACACCGCTATTGATTA-CTTTAGCGGCGTTTTTCATAAAAACGCTGCAAAATTG
**** * * * * **
51613861 TTTTCATTTTGAACAAAACGAAGCCGTTCTGCTATTCTAAAATTTTTTTATTTTGTTTTTTATAA
886 ACACCATTTTGAACAAAACAAAACCATTCTGATATTCTAAAATTGATTTATTTTGTTTTTTATAA
51613926 ATTGGTTTA
951 ATTGGTTTA
51613935 TTTTTA-AAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTT
1 TTTTTATAAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCT--AAA-TT
*
51613999 TTTTATTTTATTTTTTATAAATTGATTTA-TTTTTTGTGGCATTTTTATAAAAAAACGCCGATGT
63 TTTTATTTTATTTTTTATAAATTGATTTATTTTTTTGTGGCATTTTTATAAAAAAACGCCGATAT
*
51614063 TGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTGAACGAAACGACGCCGTTTTG
128 TGCTTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTG
*
51614128 CTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGG-TTTTTTTTTGCAGCGTTTTTATAAA
193 CTATTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTTGCAGCG-TCTT-TAAA
* **
51614192 AAACGCCGCTATTTCATTTTGAAGAAAATGACACCATTTTGCTATGCTAAAATTTTTTTATTTTA
256 AAACGCCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAAATTTTTATTTTA
* * * * *
51614257 TTTTTTATAAATTGATTTATTTTGTTGTGGCGTTTTTATAAAAAACGCCTCTATTGCTTACCTTT
321 TTTTTTAGAAATTGATTTATTTT-TTGTGGCGTCTGTATAAAAAACACCGCTATTGCTTACCTTT
51614322 AGCGGCGTTTTTAT-AACGCCGCAAAACTTTTTTCATTTTGAACAAAACGAC-TCCGTTTTGT-T
385 AGCGGCGTTTTTATAAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACGT-CGTTTT-TCT
* * *
51614384 ATTCTAAAAATTTTTTATTTTGTTTTTTATAAATT-GGTT-TTTTTTGCGGCGTTTTTATAAAAA
448 AGTCTAAAAATTTTTTATTTTCTTCTTTATAAATTAGGTTATTTTTTGCGGCGTTTTTAT--AAA
* **
51614447 AAACGCTGCTATTTCAGTTTGAACAAAATGGTACCGATTTGCT-TGCTAAAAATTTTTTATTTTA
511 AAACGCCGCTATTTCAGTTTGAACAAAATGACACCGATTTGCTATGCTAAAAATTTTTTATTTTA
51614511 TTTTTTATAAATTGATTTAATTTTTGATG-CGTTTTTATAAAAAAACGCCGCTATTGCTTACCTT
576 TTTTTTATAAATTGATTTAATTTTTGA-GACGTTTTTATAAAAAAACGCCGCTATTGCTTACCTT
* * * *
51614575 TAGTGGCCTTTTTATGAACAACGCTGCAAAATTTTTTTCATTTTAAACAAAACGACGTCGTTTTG
640 TAGCGGCCTTTTTATGAACAACGCCGCAAAA-TTTTTTCATTTTAAACAAAACGACGACGTTTCG
*
51614640 CTAGTCTAAAAATTTTTTATTTTCTTTTTTATAAATTAGTTT-TTTTTTGCGGC
704 CTAGTCTAAAAATTTTTTATTTTCTTTTGTATAAATTAGTTTATTTTTTGCGGC
51614693 ATTTTTATAA
Statistics
Matches: 1546, Mismatches: 144, Indels: 111
0.86 0.08 0.06
Matches are distributed among these distances:
968 19 0.01
969 125 0.08
970 230 0.15
971 21 0.01
972 139 0.09
973 118 0.08
974 51 0.03
979 4 0.00
980 12 0.01
981 74 0.05
982 54 0.03
983 29 0.02
984 77 0.05
985 3 0.00
987 10 0.01
988 60 0.04
989 323 0.21
990 24 0.02
991 28 0.02
992 12 0.01
998 60 0.04
999 19 0.01
1000 47 0.03
1002 7 0.00
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (959 bp):
TTTTTATAAAAACACCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAATTTTT
TATTTTATTTTTTATAAATTGATTTATTTTTTTGTGGCATTTTTATAAAAAAACGCCGATATTGC
TTACCTTTAGCATAAAAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTA
TTCTAAAAATTTTTTATTTTGTTTTGTATAAATTGGTTTTTTTTTTGCAGCGTCTTTAAAAAACG
CCGCTATTTCATTTTGAACAAAATGACACCATTTTGCTATGCTAAAAAATTTTTATTTTATTTTT
TAGAAATTGATTTATTTTTTGTGGCGTCTGTATAAAAAACACCGCTATTGCTTACCTTTAGCGGC
GTTTTTATAAACGCCGCAAAACTTTTTTCATTTTGAACAAAACGACGTCGTTTTTCTAGTCTAAA
AATTTTTTATTTTCTTCTTTATAAATTAGGTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCT
ATTTCAGTTTGAACAAAATGACACCGATTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAA
ATTGATTTAATTTTTGAGACGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCCTTT
TTATGAACAACGCCGCAAAATTTTTTCATTTTAAACAAAACGACGACGTTTCGCTAGTCTAAAAA
TTTTTTATTTTCTTTTGTATAAATTAGTTTATTTTTTGCGGCGATAACACCGTTTTGCTATGCTA
AAAAAATTGACAGTTTATTTGCTAAAAATTATTTATATTTTGGTTTTTATAAACACCGCTATTGA
TTACTTTAGCGGCGTTTTTCATAAAAACGCTGCAAAATTGACACCATTTTGAACAAAACAAAACC
ATTCTGATATTCTAAAATTGATTTATTTTGTTTTTTATAAATTGGTTTA
Found at i:51615123 original size:106 final size:105
Alignment explanation
Indices: 51614951--51615474 Score: 669
Period size: 106 Copynumber: 5.0 Consensus size: 105
51614941 GCAAAATTTT
* ** * * * *
51614951 TTTCATTTTGAACAAAAACGATGCCGATTTGCTATTCGAAAATTTTTTTATTTTATTTTTTATAA
1 TTTCATTTTGAAC-AAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAA
* *
51615016 ATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAGTGCCGCTA
65 ATTGATTTATTTTTTGCGGCGTTTTTATAAAAA-CGCCGCTA
* *
51615058 TTTCATTCTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
51615123 TTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTA
66 TTGATTTATTTTTTGCGGCG-TTTTTATAAAAACGCCGCTA
*
51615164 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* * * *
51615229 TTGATTTATTTTTTTGTGGCGTTTTTATAAAAA--AC-TTT
66 TTGATTTA-TTTTTTGCGGCGTTTTTATAAAAACGCCGCTA
* * * * *
51615267 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTTTTTGTTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* * **
51615331 TTGGTTGATTTTTTGCGGCGTTTTTATAAAAAAACGTTGCTA
66 TTGATTTATTTTTTGCGGCGTTTTTAT--AAAAACGCCGCTA
* ** * *
51615373 TTTCTTTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAATTTTATTTTAGTTTTTGTAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* *
51615438 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAACGCC
66 TTGATTTATTTTTTGCGGCGTTTTTAT-AAAAACGCC
51615475 AGTATTGCTT
Statistics
Matches: 364, Mismatches: 45, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
101 18 0.05
102 30 0.08
103 40 0.11
104 1 0.00
106 196 0.54
107 79 0.22
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (105 bp):
TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGATTTATTTTTTGCGGCGTTTTTATAAAAACGCCGCTA
Found at i:51615384 original size:209 final size:209
Alignment explanation
Indices: 51614951--51615473 Score: 690
Period size: 209 Copynumber: 2.5 Consensus size: 209
51614941 GCAAAATTTT
* ** * * * *
51614951 TTTCATTTTGAACAAAAACGATGCCGATTTGCTATTCGAAAATTTTTTTATTTTATTTTTTATAA
1 TTTCATTTTGAAC-AAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAA
* * * *
51615016 ATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAGTGCCGCTATTTCATTCTGAACAAAATGACAC
65 ATTGATTTATTTTTTGAGGCGTTTTTATAAAAA---ACGCTATTTCATTCTGAACAAAACGACAC
*
51615081 CGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTGCGGCGTTT
127 CGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTGATTTTTTGCGGCGTTT
*
51615146 TTTATAAAAACGCCGCTA
192 TTTAAAAAAACGCCGCTA
*
51615164 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
* * * * *
51615229 TTGATTTATTTTTTTGTGGCGTTTTTATAAAAAAC-TTTTTTCATTTTGAACAAAACGACGCCGT
66 TTGATTTA-TTTTTTGAGGCGTTTTTATAAAAAACGCTATTTCATTCTGAACAAAACGACACCGT
* ** * *
51615293 TTTGCTATTCT-AAAATTTTTTTTTTTGTTTTTTATAAATTGGTTGATTTTTTGCGGCGTTTTTA
130 TTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTGATTTTTTGCGGCGTTTTT-
**
51615357 TAAAAAAACGTTGCTA
194 TAAAAAAACGCCGCTA
* ** * *
51615373 TTTCTTTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAATTTTATTTTAGTTTTTGTAAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
*
51615438 TTGATTTAATTTTTGAGGCGTTTTTATAAAAAACGC
66 TTGATTTATTTTTTGAGGCGTTTTTATAAAAAACGC
51615474 CAGTATTGCT
Statistics
Matches: 273, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
208 71 0.26
209 114 0.42
210 1 0.00
212 51 0.19
213 36 0.13
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (209 bp):
TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAA
TTGATTTATTTTTTGAGGCGTTTTTATAAAAAACGCTATTTCATTCTGAACAAAACGACACCGTT
TTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTGATTTTTTGCGGCGTTTTTTA
AAAAAACGCCGCTA
Found at i:51615504 original size:915 final size:877
Alignment explanation
Indices: 51614344--51616033 Score: 2218
Period size: 915 Copynumber: 1.9 Consensus size: 877
51614334 ATAACGCCGC
* *
51614344 AAAACTTTTTTCATTTTGAACAAAACGACTCCGTTTTGTTATTCTAAAAATTTTTTATTTTGTTT
1 AAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTT
51614409 TTTATAAATTGGTTTTTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACAAA
66 TTTATAAATTGGTTTTTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACAAA
** ** * *
51614474 ATGGTACCGATTTGCTTGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTAATTTTTGAT
131 ATGACACCGATTTGCTTGCTAAAAAAATTTTATTTTAGTTTTTATAAATTGATTTAATTTTTGAG
* * *
51614539 GCGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGTGGCCTTTTTATGAACAACGCTGCAA
196 GCGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCCTTTTTATGAACAACCCCGCAA
51614604 AATTTTTTTCATTTTAAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTT
261 AATTTTTTTCATTTTAAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTT
** * * *
51614669 TATAAATTAGTTTTTTTTTGCGGCATTTTTATAAAA-AACGCCGCTATTT-CATTTTGAAC-AAA
326 TATAAATTAG-TTCATTTT---G-A-----ACAAAATAACACCG-T-TTTGC--TATG--CTAAA
* * ****
51614731 ATGACACCGTTT-TGCTATG-CTAAAAATT-TTTTATTTTGTTTTTGATAAATTGGTTTATTTTT
375 AT-A-A-CGTTTATGCTATGTCTAAAAATTGATTTA---T-TTTTTGAGAAATT--TTTATAAAA
* *
51614793 TACGGCGTTTTTTCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAA-AAATTA
431 AACGCCG------CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATAAATTA
* *
51614857 TTTTATTTTTTATAAATTGATTTATTTTTTCCGGCATTTTTATA-AAAAACACCACTATTGCTTA
490 TTTTATTTTTTATAAATTGATTTAATTTTTCCAGCATTTTTATATAAAAACACCACTATTGCTTA
* *
51614921 CCTTTAGCGGCGTTTTTATCGCAAAATTTTTTTCATTTTGAACAAAAACGATGCCGATTTGCTAT
555 CCTTTAGCGGCATTTTTA-CGCAAAATTTTTTTCATTTTGAAC-AAAACGACGCCGATTTGCTAT
* *
51614986 TCGAAAATTTTTTTATTTT-ATTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTATAAAAAG
618 TAGAAAAATTTTTTATTTTGATTTTTTATAAATTGGTTTATTTTTTGCGGCG-TTTT-T------
***
51615050 TGCCGCTATTTCATTCTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTT
675 T----CTATTTCATTCTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTTAGTTTATTT
51615115 TTTATAAATTGATTTATTTTTTGCGGCGTTTTTTATAAAAACGCCGCTATTTCATTTTGAACAAA
736 TTTATAAATTGATTTA-TTTTTGCGGCG-TTTTTATAAAAACGCCGCTATTTCATTTTGAACAAA
51615180 ATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTTG
799 ATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATAAATTGATTTATTTTTTTG
51615245 TGGCGTTTTTATAA
864 TGGCGTTTTTATAA
*
51615259 AAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AAAATTTTTTTTTTTGTTT
1 AAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTT
* **
51615323 TTTATAAATTGGTTGATTTTTTGCGGCGTTTTTAT-AAAAAAACGTTGCTATTTCTTTTTGAACA
66 TTTATAAATTGGTT--TTTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACA
* *
51615387 AAATGACACCGTTTTGCTATGCTAAAAAAATTTTATTTTAGTTTTTGTAAATTGATTTAATTTTT
129 AAATGACACCGATTTGCT-TGCTAAAAAAATTTTATTTTAGTTTTTATAAATTGATTTAATTTTT
*
51615452 GAGGCGTTTTTAT-AAAAAACGCCAG-TATTGCTTACCTTTAGCGGCGTTTTTATGAACAACCCC
193 GAGGCGTTTTTATAAAAAAACGCC-GCTATTGCTTACCTTTAGCGGCCTTTTTATGAACAACCCC
*
51615515 GCAAAATTTTTTTCATTTTGAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCT
257 GCAAAATTTTTTTCATTTTAAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCT
* ** *
51615580 TTTTTATAAATTAGTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAATAATTTTTATT
322 TTTTTATAAATTAGTTCATTTTGAACAAAATAACACCGTTTTGCTATGCTAAAATAACGTTTATG
* * * * ***
51615645 TTATGTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTG
387 CTATG-TCTAAAAATTGATTTATTTTTTGAGAAATTTTTATAAAAAACGCCGCTATTTCATTTTG
* ***
51615710 AACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTAAT
451 AACAAAATGACACCGTTTTGCTATGCTAAAAATAAATTATTTTATTTTTTATAAATTGATTTAAT
* * * * *
51615775 TTTTGCAGCGTTTTTTTATAAAAACACCGCTATTGCTTACCTTTAGTGGCATTTTTACGCAAAAT
516 TTTTCCAGCATTTTTATATAAAAACACCACTATTGCTTACCTTTAGCGGCATTTTTACGCAAAAT
* * *
51615840 TTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAAATTTTTTATTTTGTTTTTTTA
581 TTTTTTCATTTTGAACAAAACGACGCCGATTTGCTATTAGAAAAATTTTTTATTTTGATTTTTTA
* *
51615905 TAAATTGGTTTATTTTTTGCGGCGTTTTTTCTATTTCATTTTGAACAAAATGATACCGTTTTGCT
646 TAAATTGGTTTATTTTTTGCGGCGTTTTTTCTATTTCATTCTGAACAAAATGACACCGTTTTGCT
*
51615970 ATGCTAAAAAAAATTTATTTTATTTTTTATAAATTGATTTATTTTTGCGGCGTTTTTATAAAAA
711 ATGCTAAAAAAAATTTAGTTTATTTTTTATAAATTGATTTATTTTTGCGGCGTTTTTATAAAAA
51616034 ACACCACTAT
Statistics
Matches: 694, Mismatches: 67, Indels: 65
0.84 0.08 0.08
Matches are distributed among these distances:
878 12 0.02
879 11 0.02
880 70 0.10
884 1 0.00
890 1 0.00
891 83 0.12
892 97 0.14
893 35 0.05
897 10 0.01
899 11 0.02
900 7 0.01
901 2 0.00
902 12 0.02
903 7 0.01
904 3 0.00
905 7 0.01
906 5 0.01
910 1 0.00
911 1 0.00
914 38 0.05
915 206 0.30
916 74 0.11
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (877 bp):
AAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAATTTTTTATTTTGTTT
TTTATAAATTGGTTTTTTTTGCGGCGTTTTTATAAAAAAAACGCTGCTATTTCAGTTTGAACAAA
ATGACACCGATTTGCTTGCTAAAAAAATTTTATTTTAGTTTTTATAAATTGATTTAATTTTTGAG
GCGTTTTTATAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCCTTTTTATGAACAACCCCGCAA
AATTTTTTTCATTTTAAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTT
TATAAATTAGTTCATTTTGAACAAAATAACACCGTTTTGCTATGCTAAAATAACGTTTATGCTAT
GTCTAAAAATTGATTTATTTTTTGAGAAATTTTTATAAAAAACGCCGCTATTTCATTTTGAACAA
AATGACACCGTTTTGCTATGCTAAAAATAAATTATTTTATTTTTTATAAATTGATTTAATTTTTC
CAGCATTTTTATATAAAAACACCACTATTGCTTACCTTTAGCGGCATTTTTACGCAAAATTTTTT
TCATTTTGAACAAAACGACGCCGATTTGCTATTAGAAAAATTTTTTATTTTGATTTTTTATAAAT
TGGTTTATTTTTTGCGGCGTTTTTTCTATTTCATTCTGAACAAAATGACACCGTTTTGCTATGCT
AAAAAAAATTTAGTTTATTTTTTATAAATTGATTTATTTTTGCGGCGTTTTTATAAAAACGCCGC
TATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTAGTTTATTTTTTATA
AATTGATTTATTTTTTTGTGGCGTTTTTATAA
Found at i:51615603 original size:68 final size:69
Alignment explanation
Indices: 51615526--51615660 Score: 193
Period size: 68 Copynumber: 2.0 Consensus size: 69
51615516 CAAAATTTTT
** * * *
51615526 TTCATTTTGAACAAAACGACGTCGTTTTGCTA-GTCTAAAA-ATTTTTTATTTTCTTTTTTATAA
1 TTCATTTTGAACAAAACGACACCGTTTTGCTATG-CTAAAATAATTTTTATTTTATGTTTTATAA
51615589 ATTAG
65 ATTAG
*
51615594 TTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAATAATTTTTATTTTATGTTTTATAAA
1 TTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAATAATTTTTATTTTATGTTTTATAAA
51615659 TT
66 TT
51615661 GATTTATTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
68 35 0.59
69 24 0.41
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (69 bp):
TTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAATAATTTTTATTTTATGTTTTATAAA
TTAG
Found at i:51615712 original size:107 final size:107
Alignment explanation
Indices: 51615594--51615808 Score: 351
Period size: 107 Copynumber: 2.0 Consensus size: 107
51615584 TATAAATTAG
51615594 TTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAATAATTTTTATTTTATGTTTTATAAA
1 TTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAA-AATTTTTATTTTATGTTTTATAAA
* * *
51615659 TTGATTTATTTTTTGCGGCGTTTTTATA-AAAAACGCCGCTAT
65 TTGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCGCTAT
* * *
51615701 TTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAAT
1 TTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATGTTTTATAAAT
*
51615766 TGATTTAATTTTTGCAGCGTTTTTTTATAAAAACACCGCTAT
66 TGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCGCTAT
51615808 T
1 T
51615809 GCTTACCTTT
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
106 47 0.47
107 53 0.53
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (107 bp):
TTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATGTTTTATAAAT
TGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCGCTAT
Found at i:51615950 original size:95 final size:93
Alignment explanation
Indices: 51615843--51616026 Score: 260
Period size: 95 Copynumber: 2.0 Consensus size: 93
51615833 GCAAAATTTT
* * *** *
51615843 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAAATTTTTTATTTTGTTTTTTTATAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGATAAAAAAAATTTATTTT-ATTTTTTATAA
*
51615908 ATTGGTTTATTTTTTGCGGCGTTTTTTCTA
65 ATTGATTTA-TTTTTGCGGCGTTTTTTCTA
* * *
51615938 TTTCATTTTGAACAAAATGATACCGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTATAAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGATAAAAAAAATTTATTTTATTTTTTATAAA
51616003 TTGATTTATTTTTGCGGCGTTTTT
66 TTGATTTATTTTTGCGGCGTTTTT
51616027 ATAAAAAACA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 16 0.20
94 18 0.23
95 45 0.57
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (93 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTATGATAAAAAAAATTTATTTTATTTTTTATAAA
TTGATTTATTTTTGCGGCGTTTTTTCTA
Found at i:51616124 original size:238 final size:237
Alignment explanation
Indices: 51615697--51616168 Score: 777
Period size: 238 Copynumber: 2.0 Consensus size: 237
51615687 AAAAACGCCG
* ***
51615697 CTATTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTAT
1 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTAT
* * *
51615762 AAATTGATTTAATTTTTGCAGCGTTTTTTTATAAAAACACCGCTATTGCTTACCTTTAGTGGCAT
66 AAATTGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCACTATTGCTTACCTTTAGCGGCAT
* *
51615827 TTTTACGCAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAAATTTTTTA
131 TTTTACGCAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTAGTAGAAAAATTTTTTA
*
51615892 TTTTGTTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTT
196 -TTTATTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTT
*
51615935 CTATTTCATTTTGAACAAAATGATACCGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTAT
1 CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTAT
* *
51616000 AAATTGATTT-ATTTTTGCGGCGTTTTTATA-AAAAACACCACTATTGCTTACCTTTAGCGGCGT
66 AAATTGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCACTATTGCTTACCTTTAGCGGCAT
*
51616063 TTTTATCGCAAAATTTTTTTCATTTTGAACAAAAACGACGCCGTTTTGCTAGTCGAAAAATTTTT
131 TTTTA-CGCAAAATTTTTTTCATTTTGAAC-AAAACGACGCCGTTTTGCTAGTAGAAAAATTTTT
51616128 TATTTATTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTT
194 TATTTATTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTT
51616169 AAATTTTTCA
Statistics
Matches: 218, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
236 35 0.16
237 80 0.37
238 103 0.47
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (237 bp):
CTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTAT
AAATTGATTTAATTTTTGCAGCGTTTTTATATAAAAACACCACTATTGCTTACCTTTAGCGGCAT
TTTTACGCAAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTAGTAGAAAAATTTTTTA
TTTATTTTTTTATAAATTGGTTTATTTTTTGCGGCGTTTTTT
Found at i:51616173 original size:49 final size:49
Alignment explanation
Indices: 51616120--51616217 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
51616110 GCTAGTCGAA
* *
51616120 AAATTTTTTATTTAT-TTTTTTATAAATTGGTTTATTTTTTGCGGCGTTT
1 AAATTTTTCATTT-TGTTTTTTATAAATTAGTTTATTTTTTGCGGCGTTT
*
51616169 AAATTTTTCATTTTGTTTTTTATAAATTAGTTTATTTTTTTCGGCGTTT
1 AAATTTTTCATTTTGTTTTTTATAAATTAGTTTATTTTTTGCGGCGTTT
51616218 TTATAAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 1 0.02
49 44 0.98
ACGTcount: A:0.20, C:0.05, G:0.11, T:0.63
Consensus pattern (49 bp):
AAATTTTTCATTTTGTTTTTTATAAATTAGTTTATTTTTTGCGGCGTTT
Found at i:51616192 original size:536 final size:547
Alignment explanation
Indices: 51615259--51616420 Score: 1543
Period size: 536 Copynumber: 2.1 Consensus size: 547
51615249 GTTTTTATAA
* * *
51615259 AAAACTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTTTTGTTTT
1 AAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAATTTTTTATTTTGTTTT
*
51615324 TTATAAATTGGTTGATTTTTTGCGGCGTTTTTATAAAAAAACGTTGCTATTTCTTTTTGAACAAA
66 TTATAAATTGGTTGATTTTTTGCGGCG-TTTTAT------A--TTGCTATTTCATTTTGAACAAA
* *
51615389 ATGACACCGTTTTGCTATGCTAAAAAAATTTTATTTTAGTTTTTGTAAATTGATTTAATTTTTGA
122 ATGACACCGTTTTGCTATGCTAAAAAAAATTTATTTTAGTTTTTATAAATTGATTTAATTTTTGA
* *
51615454 GGCGTTTTTATAAAAAACGCCAGTATTGCTTACCTTTAGCGGCGTTTTTATGAACAACCCCGCAA
187 GGCGTTTTTATAAAAAACACCACTATTGCTTACCTTTAGCGGCGTTTTTAT-----A---CGCAA
* *
51615519 AATTTTTTTCATTTTGAACAAAACGACGTCGTTTTGCTAGTCTAAAAATTTTTTATTTTCTTTTT
244 AATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTAGTCGAAAAATTTTTTATTTTCTTTTT
*
51615584 TATAAATTAGTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAATAATTTTTATTTTAT
309 TATAAATTAGTTCATTTT------AATG--A-CG---TGCTAT-CTAAAAT-ATTTTCATTTTAT
51615649 GTTTTATAAATT-GATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTGAAC
360 GTTTTATAAATTAG-TTTATTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTGAAC
*
51615713 AAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTTAATTTT
424 AAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATAAATTGATTT-ATTTT
* * *
51615778 TGCAGCGTTTTTTTATAAAAACACCGCTATTGCTTACCTTTAGTGGC-ATTTT-T-A-CGC
488 TGCAGCGTTTTTATA-AAAAACACCACTATTGCTTACCTTTAGCGGCGATTTTATAACCGC
51615835 AAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAAATTTTTTATTTTGTTT
1 AAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTAT-AAAATTTTTTATTTTG-TT
* *
51615900 TTTTATAAATTGGTTTATTTTTTGCGGCG-TTT-T-TT-CTATTTCATTTTGAACAAAATGATAC
64 TTTTATAAATTGGTTGATTTTTTGCGGCGTTTTATATTGCTATTTCATTTTGAACAAAATGACAC
* *
51615961 CGTTTTGCTATGCTAAAAAAAATTTATTTTATTTTTTATAAATTGATTT-ATTTTTGCGGCGTTT
129 CGTTTTGCTATGCTAAAAAAAATTTATTTTAGTTTTTATAAATTGATTTAATTTTTGAGGCGTTT
51616025 TTATAAAAAACACCACTATTGCTTACCTTTAGCGGCGTTTTTAT-CGCAAAATTTTTTTCATTTT
194 TTATAAAAAACACCACTATTGCTTACCTTTAGCGGCGTTTTTATACGCAAAATTTTTTTCATTTT
* *
51616089 GAACAAAAACGACGCCGTTTTGCTAGTCGAAAAATTTTTTATTTAT-TTTTTTATAAATTGGTTT
259 GAAC-AAAACGACGCCGTTTTGCTAGTCGAAAAATTTTTTATTT-TCTTTTTTATAAATTAGTTC
* * * *
51616153 ATTTT-TTG-CG-GCGT-T-T-AAAT-TTTTCATTTTGTTTTTTATAAATTAGTTTATTTTTTTC
322 ATTTTAATGACGTGC-TATCTAAAATATTTTCATTTTATGTTTTATAAATTAGTTTATTTTTTGC
51616211 GGCGTTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAA
386 GGCGTTTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAA
*
51616276 AATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTGCGGCGTTTTTATAAAAAACACCACTA
451 AATTTTTTATTTTATTTTTTATAAATTGATTTATTTTTGCAGCGTTTTTATAAAAAACACCACTA
*
51616341 TTGCTTACCTTTAGCGGCGTTTTTATGAAAACGCCGC
516 TTGCTTACCTTTAGCGGCGATTTTAT---AA--CCGC
*
51616378 AAATTTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATT
1 AAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATT
51616421 TTGGTTTTTA
Statistics
Matches: 543, Mismatches: 28, Indels: 63
0.86 0.04 0.10
Matches are distributed among these distances:
534 29 0.05
535 22 0.04
536 129 0.24
537 1 0.00
538 4 0.01
539 1 0.00
540 1 0.00
541 3 0.01
542 1 0.00
543 45 0.08
545 2 0.00
549 2 0.00
555 24 0.04
556 58 0.11
557 1 0.00
564 56 0.10
565 70 0.13
566 2 0.00
575 1 0.00
576 46 0.08
577 15 0.03
578 30 0.06
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (547 bp):
AAAATTTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTATAAAATTTTTTATTTTGTTTT
TTATAAATTGGTTGATTTTTTGCGGCGTTTTATATTGCTATTTCATTTTGAACAAAATGACACCG
TTTTGCTATGCTAAAAAAAATTTATTTTAGTTTTTATAAATTGATTTAATTTTTGAGGCGTTTTT
ATAAAAAACACCACTATTGCTTACCTTTAGCGGCGTTTTTATACGCAAAATTTTTTTCATTTTGA
ACAAAACGACGCCGTTTTGCTAGTCGAAAAATTTTTTATTTTCTTTTTTATAAATTAGTTCATTT
TAATGACGTGCTATCTAAAATATTTTCATTTTATGTTTTATAAATTAGTTTATTTTTTGCGGCGT
TTTTATAAAAAACGCCGCTATTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTT
TTTATTTTATTTTTTATAAATTGATTTATTTTTGCAGCGTTTTTATAAAAAACACCACTATTGCT
TACCTTTAGCGGCGATTTTATAACCGC
Done.