genome.fa.s3.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  167  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55888210--55888274	3	22.0	3	79	14	64	30	0	4	64	1.14
55888234--55888274	3	13.7	3	90	10	66	29	0	2	68	1.03
55888540--55889258	358	2.0	359	99	0	1422	28	12	6	52	1.63
55892965--55892998	16	2.1	17	88	5	52	50	35	2	11	1.54
55894157--55894389	127	1.8	126	81	7	290	34	11	17	36	1.86
55896252--55896705	87	5.3	87	78	8	432	22	22	22	32	1.98
55896334--55896754	127	3.3	127	90	0	655	23	22	22	32	1.98
55896155--55896578	214	2.0	214	90	0	670	23	21	22	32	1.98
55896212--55896706	214	2.3	213	82	6	529	22	22	22	32	1.98
55897363--55897558	108	1.8	108	87	4	297	46	10	16	26	1.78
55908314--55908519	103	2.0	103	90	1	324	33	18	7	39	1.80
55915547--55915683	40	3.4	40	88	3	204	29	22	19	27	1.98
55917336--55917377	20	2.1	20	100	0	84	30	30	14	23	1.94
55926704--55926831	45	2.8	45	90	0	193	34	19	21	24	1.96
55930364--55930427	17	3.6	17	74	15	67	46	12	12	28	1.78
55930367--55930435	36	1.9	36	93	0	120	46	14	13	26	1.81
55931413--55931479	32	2.2	31	78	10	75	40	2	10	46	1.53
55934980--55935466	243	2.0	243	93	2	827	36	13	11	37	1.82
55939113--55939297	96	1.9	96	87	0	271	31	17	16	34	1.92
55942455--55942522	30	2.3	30	92	0	109	50	1	5	42	1.35
55949185--55949247	30	2.1	30	93	0	108	47	15	14	22	1.81
55969877--55969905	12	2.3	13	94	5	51	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55973999--55974176	96	1.9	96	84	0	239	32	17	22	28	1.96
55974094--55974620	44	11.8	44	77	7	434	30	19	22	27	1.98
55974317--55974618	89	3.4	88	84	2	383	30	18	23	27	1.98
55973997--55974623	316	2.0	318	83	7	790	31	18	22	27	1.97
55974323--55974618	133	2.2	134	84	1	389	30	18	23	27	1.98
55974564--55974649	44	2.0	44	83	4	111	34	17	20	26	1.95
55978810--55978866	28	2.1	27	93	6	98	54	38	0	7	1.28
55982467--55982632	45	3.7	45	78	4	158	25	16	25	31	1.97
55987161--55987197	9	4.1	9	92	0	65	29	10	13	45	1.77
55987913--55988007	48	2.0	48	87	0	136	42	21	14	22	1.89
55992963--55993058	48	2.0	48	89	0	147	40	20	17	20	1.91
55993283--55993355	36	2.0	36	91	0	119	41	16	8	34	1.78
55994400--55994433	9	3.9	9	84	7	52	67	0	0	32	0.91
55997029--55997060	15	2.0	17	88	11	50	28	25	0	46	1.53
55997529--55997778	38	6.6	38	85	0	311	45	26	16	12	1.83
55997549--55997778	76	3.0	76	91	0	352	44	24	16	13	1.85
55997538--55997778	114	2.1	114	88	3	351	44	25	16	13	1.84
56003499--56003727	38	6.0	38	82	1	262	44	20	16	18	1.87
56003497--56003712	114	1.9	114	87	3	319	43	20	16	18	1.87
56009782--56009826	23	2.0	23	81	0	54	66	4	2	26	1.22
56011253--56011435	50	3.7	50	87	0	231	24	19	22	34	1.96
56011559--56012223	44	14.2	44	67	16	277	27	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56011511--56012269	142	5.3	142	96	0	1320	28	20	17	32	1.96
56013522--56013610	42	2.1	42	95	0	160	33	30	11	24	1.90
56041696--56041728	17	1.9	17	88	11	50	51	18	0	30	1.46
56047072--56047105	9	3.9	9	84	7	52	67	0	0	32	0.91
56050822--56051151	162	2.0	164	98	1	637	23	17	23	36	1.95
56053265--56053296	15	2.0	17	88	11	50	28	25	0	46	1.53
56053780--56054040	114	2.3	114	84	4	330	43	22	16	18	1.88
56053780--56054051	38	7.2	38	81	2	269	44	22	16	17	1.87
56057948--56057989	21	2.0	21	85	4	57	59	0	16	23	1.37
56058450--56058519	34	2.1	34	91	5	115	35	32	5	25	1.80
56059238--56059272	11	3.2	11	88	12	54	14	28	8	48	1.73
56059713--56059979	38	7.0	38	84	1	266	44	22	17	15	1.86
56068284--56068368	27	3.2	27	93	1	145	16	20	22	41	1.90
56071262--56071306	19	2.3	20	78	17	51	33	2	2	62	1.20
56080870--56081082	104	2.0	105	99	0	419	31	21	16	29	1.96
56086097--56086237	50	2.8	50	82	0	147	27	21	27	23	1.99
56086795--56086829	5	6.8	5	87	6	52	37	0	2	60	1.12
56087765--56087816	25	2.1	25	85	7	70	17	25	21	36	1.94
56087783--56087858	22	3.3	22	76	12	73	17	27	17	38	1.91
56091453--56091487	5	6.8	5	93	6	61	40	0	0	60	0.97
56092453--56092510	25	2.3	25	87	0	80	18	22	20	37	1.94
56092496--56092553	22	2.7	22	72	2	64	15	25	18	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56093424--56093462	20	2.0	20	90	10	62	56	5	23	15	1.59
56100810--56101669	50	17.2	50	87	1	1197	22	30	21	25	1.98
56108525--56108574	27	1.9	27	88	8	77	56	18	0	26	1.42
56108608--56108971	181	2.0	182	99	0	721	48	12	8	30	1.70
56108941--56109071	50	2.6	51	84	4	176	38	12	14	35	1.84
56109569--56109622	10	5.0	11	76	17	51	27	0	1	70	0.98
56110066--56110106	14	3.0	14	82	7	57	24	0	4	70	1.06
56112637--56112684	21	2.3	20	80	16	53	33	6	6	54	1.51
56112838--56112980	49	2.9	48	82	5	178	30	21	27	20	1.98
56113114--56113161	25	1.9	25	95	0	87	50	12	16	20	1.78
56113232--56113270	12	3.2	12	85	0	51	56	5	20	17	1.60
56113233--56113281	20	2.5	20	86	3	73	59	6	22	12	1.55
56126343--56126448	43	2.5	43	84	6	135	35	25	16	21	1.95
56126386--56126515	67	1.9	68	82	4	165	30	26	18	24	1.98
56126450--56126557	41	2.6	41	95	0	189	20	28	21	29	1.98
56134059--56134090	16	2.0	16	93	0	55	25	15	0	59	1.36
56134272--56134455	51	3.6	48	78	14	176	31	27	16	23	1.96
56134265--56134492	101	2.2	102	83	6	295	30	28	15	25	1.96
56135350--56135539	51	3.8	52	80	8	205	30	26	17	25	1.98
56135348--56135531	101	1.8	101	87	4	273	30	25	18	25	1.98
56135343--56135565	101	2.2	102	80	6	249	29	26	17	26	1.97
56137985--56138028	21	2.1	21	87	8	63	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56137983--56138036	17	2.9	19	75	20	51	62	1	1	33	1.16
56146637--56146679	21	2.0	21	86	8	61	62	2	0	34	1.08
56152758--56152802	18	2.5	17	82	13	54	24	4	0	71	1.05
56154460--56154531	36	2.0	36	83	0	90	25	20	30	23	1.99
56154634--56154748	39	3.0	39	92	1	187	29	7	11	51	1.66
56162158--56162341	101	1.8	101	84	4	255	24	19	26	29	1.98
56162154--56162339	50	3.7	49	71	11	153	24	18	26	29	1.98
56164417--56164467	24	2.1	25	88	3	77	35	7	9	47	1.66
56170127--56170339	70	3.0	71	83	2	293	30	16	16	35	1.92
56175761--56175937	43	4.1	43	82	5	223	19	37	27	15	1.92
56175761--56176124	86	4.3	86	74	6	240	20	34	27	18	1.96
56175911--56176108	43	4.6	43	71	8	143	18	31	29	20	1.96
56176490--56176984	85	5.8	85	72	8	310	19	31	29	20	1.97
56176452--56176896	43	10.4	43	70	10	170	18	31	29	20	1.96
56176533--56176984	43	10.6	42	68	15	128	19	32	28	19	1.96
56176415--56176934	256	2.0	255	83	3	627	19	32	28	19	1.96
56176991--56177132	43	3.3	42	73	11	128	19	32	28	19	1.96
56176849--56177144	152	1.9	152	88	1	441	20	32	27	19	1.97
56176991--56177188	85	2.3	84	85	1	261	20	32	27	18	1.96
56176754--56177188	237	1.8	237	82	2	550	20	31	28	19	1.97
56178535--56178576	22	1.9	22	90	0	66	23	16	26	33	1.96
56181542--56181687	43	3.4	42	80	5	121	19	27	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56181700--56181859	75	2.1	75	88	0	230	24	16	29	30	1.96
56190831--56190901	36	2.0	36	86	2	99	30	25	7	36	1.83
56194616--56194732	43	2.7	43	81	2	137	17	35	26	21	1.95
56194767--56194970	85	2.4	84	81	4	241	17	29	31	21	1.96
56194983--56196123	85	13.4	85	71	9	538	18	30	30	20	1.97
56195243--56195553	171	1.8	171	82	1	408	17	29	30	21	1.96
56194779--56196123	43	31.5	43	68	9	583	18	30	30	20	1.97
56194779--56196125	128	10.5	126	72	10	508	18	29	30	20	1.97
56195682--56196208	128	4.1	126	76	6	445	19	31	29	18	1.96
56196105--56196270	85	2.0	85	81	4	201	19	34	27	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210