Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70076365
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3341059 characters in sequence are not A, C, G, or T
File 168 of 210
Found at i:56196628 original size:42 final size:42
Alignment explanation
Indices: 56196547--56196678 Score: 117
Period size: 43 Copynumber: 3.1 Consensus size: 42
56196537 TGAGCTACCT
* * **
56196547 GCACATCCAA-CATTCTAGGTTCCCGATGGTGTTTAAGGCTCCC
1 GCACATCCAAGCA--CTAGGTTACCGATGGTGCTCGAGGCTCCC
* *
56196590 GCACATCCAAGCACTAGGGTACCGATGGTGCTCGAGGCTCTC
1 GCACATCCAAGCACTAGGTTACCGATGGTGCTCGAGGCTCCC
* * *
56196632 GCACGA-CCAAGGGC-CTAGGTTGCCGATGGTGCCCGAGGCTCCA
1 GCAC-ATCCAA--GCACTAGGTTACCGATGGTGCTCGAGGCTCCC
56196675 GCAC
1 GCAC
56196679 GACCAGAGGC
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
42 31 0.42
43 39 0.53
44 4 0.05
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (42 bp):
GCACATCCAAGCACTAGGTTACCGATGGTGCTCGAGGCTCCC
Found at i:56196669 original size:43 final size:42
Alignment explanation
Indices: 56196611--56196730 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
56196601 CACTAGGGTA
* *
56196611 CCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTC-CGCACGACCAAGGGCCGAGGTTG
56196654 CCGATGGTGCCCGAGGCTCCAGCACGACC-AGAGGCCGAGGTTG
1 CCGATGGTGCCCGAGGCTCC-GCACGACCAAG-GGCCGAGGTTG
* * *
56196697 CCGATGGTGCCTGAGGCTCACTCACAACCAAGGG
1 CCGATGGTGCCCGAGGCTC-CGCACGACCAAGGG
56196731 GAGGGACCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
42 3 0.04
43 62 0.91
44 3 0.04
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (42 bp):
CCGATGGTGCCCGAGGCTCCGCACGACCAAGGGCCGAGGTTG
Found at i:56196851 original size:75 final size:75
Alignment explanation
Indices: 56196728--56196885 Score: 271
Period size: 75 Copynumber: 2.1 Consensus size: 75
56196718 TCACAACCAA
56196728 GGGGAGGGACCGGGACGATTCGTTCATTGTTGGGTACATCACATGTAACGATATCCAAATTCTAC
1 GGGGAGGGACCGGGACGATTCGTTCATTGTTGGGTACATCACATGTAACGATATCCAAATTCTAC
56196793 CTTTACGATT
66 CTTTACGATT
* *
56196803 GGGGAGGGACTGGGACGATTCGTTCATTGTTGGGTACGTCACATGTAACGATATCCAAATTCTAC
1 GGGGAGGGACCGGGACGATTCGTTCATTGTTGGGTACATCACATGTAACGATATCCAAATTCTAC
**
56196868 CTTTGGGATT
66 CTTTACGATT
*
56196878 TGGGAGGG
1 GGGGAGGG
56196886 TCTCGTTGCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 78 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (75 bp):
GGGGAGGGACCGGGACGATTCGTTCATTGTTGGGTACATCACATGTAACGATATCCAAATTCTAC
CTTTACGATT
Found at i:56197099 original size:23 final size:24
Alignment explanation
Indices: 56197073--56197118 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
56197063 GTTACCAGGC
56197073 GACA-ATCATATGTCTGAAACAAG
1 GACAGATCATATGTCTGAAACAAG
*
56197096 GACAGGTTCATATGTCTGAAACA
1 GACA-GATCATATGTCTGAAACA
56197119 GGAAAACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
25 16 0.80
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (24 bp):
GACAGATCATATGTCTGAAACAAG
Found at i:56207369 original size:43 final size:43
Alignment explanation
Indices: 56207065--56207355 Score: 394
Period size: 43 Copynumber: 6.8 Consensus size: 43
56207055 CCCGGACATC
*
56207065 CCAAGCACCAAGG-TACCGATGGTGCTCGAGGCTACTGCCCAT
1 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
56207107 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
1 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
56207150 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
1 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
56207193 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
1 CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
* * * * *
56207236 CCAAGCACCAAGGTTGTCGATGGTG-TCTAAGGCTCCCGCACAT
1 CCAAGCACCAAGGTTGCCGATGGTGCTC-GAGGCTACTGCCCAT
* * * * * *
56207279 CCGAGCCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCACAT
1 CCAAG-CACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
*
56207322 CCAAGCCACCAAAG-TGCCGATGGTGC-CTGAGGCT
1 CCAAG-CACCAAGGTTGCCGATGGTGCTC-GAGGCT
56207356 CTCGCACGAC
Statistics
Matches: 229, Mismatches: 15, Indels: 9
0.91 0.06 0.04
Matches are distributed among these distances:
42 16 0.07
43 203 0.89
44 10 0.04
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (43 bp):
CCAAGCACCAAGGTTGCCGATGGTGCTCGAGGCTACTGCCCAT
Found at i:56207369 original size:129 final size:126
Alignment explanation
Indices: 56207055--56207956 Score: 465
Period size: 129 Copynumber: 7.1 Consensus size: 126
56207045 TTTTCTTTAG
* * * *
56207055 CCCGGACATCCCAAGCACCAAGGTACCGATGGTG-CTCGAGGCTACTGC-CCATCCAAGCACCAA
1 CCCGCACAT-CCAAGCACCAAGGTGCCGATGGTGCCT-GAGGCT-CTGCACGA-CCAAGCACCTA
* * * * *
56207118 GGTTGCCGATGGTG-CTCGAGGCTACTGCCCATCCAAGCACCAAGGTTGCCGATGGTGCTCGAGG
62 GGTTGTCGATGGTGTCT-AAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGG
56207182 CT
125 CT
* * * * *
56207184 ACTGCCCATCCAAGCACCAAGGTTGCCGATGGTG-CTCGAGGCTACTGC-CCATCCAAGCACCAA
1 CCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCT-GAGGCT-CTGCACGA-CCAAGCACCTA
* * *
56207247 GGTTGTCGATGGTGTCTAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCAATGCTGCTCGAGGC
62 GGTTGTCGATGGTGTCTAAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCTCGAGGC
56207312 T
126 T
* ** **
56207313 CCCGCACATCCAAGCCACCAAAGTGCCGATGGTGCCTGAGGCTCTCGCACGACCAAGGGCCTATT
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCTGAGGCTCT-GCACGACCAAGCACCTAGG
* * * * ** ** *
56207378 TTG-CAAATGGTGCCGAAGGCTCCCACACGA-CCAAGGGCTTAGTTTGCCGATGGTG-TCCGAGG
64 TTGTC-GATGGTGTCTAAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCT-CGAGG
56207440 CT
125 CT
* * * * * *
56207442 CCCACACATCCGAGTACCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-AAGCCTAGG
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCT-GCACGACCAAGCA-CCTAGG
* * * * * * * * * *
56207506 TTGTTGATGCTGTTTGAGGTTCCCGCACATTCAA-CTCTAAGGTGTCGATGGTGCTCAAGGCT
64 TTGTCGATGGTGTCTAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
** * * * ** *
56207568 CCCGCACAT-CATAGCACTGAGGTGTCGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGT
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCTGAGGCTC-TGCACGACCAAGCACCTAGG
* * * * * * * * * *
56207632 TTGTCGATGGTGTCCAAGGCTCCTGCACAACCGAGCGCCCAGGTGCCGATTGTACCCGATGCT
64 TTGTCGATGGTGTCTAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
** * * * * ** *
56207695 TTCGTACGA-CCAAAG-GCCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAAGACCAAGGCTTA-
1 CCCGCAC-ATCC-AAGCACCAAGGT-GCCGATGGTGCCTGAGGCT-CTGCACGACCAA-GC--AC
** * * **
56207757 CTA--TT-TCGATGGTGTCCGAGGCTCCTGCACATCCGAGCACTTAGGTGCCGATGGTG-TCCGA
59 CTAGGTTGTCGATGGTGTCTAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCT-CGA
56207818 GGCT
123 GGCT
* * ** * * * * * **
56207822 CTCGTACGA-CCAAGGGCCTAGGTTGTCGATGGTGCCTGAGCCTCCCGCACAACCAAGGGCCTAG
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGCT-CTGCACGACCAAGCACCTAG
* * ** ** * * * *
56207886 TTTGCCGATGGTGTCCGAGTTTTCCGCACATCCAAGCACCTAGGTGTCGATGGTGCCCGAGGCT
63 GTTGTCGATGGTGTCTAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
*
56207950 CTCGCAC
1 CCCGCAC
56207957 GACCAAAGGC
Statistics
Matches: 608, Mismatches: 130, Indels: 71
0.75 0.16 0.09
Matches are distributed among these distances:
125 4 0.01
126 93 0.15
127 130 0.21
128 171 0.28
129 185 0.30
130 25 0.04
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (126 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCTGCACGACCAAGCACCTAGGTT
GTCGATGGTGTCTAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
Found at i:56207388 original size:43 final size:42
Alignment explanation
Indices: 56207341--56207448 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 42
56207331 CAAAGTGCCG
* * *
56207341 ATGGTGCCTGAGGCTCTCGCACGACCAAGGGCCTATTTTGCAA
1 ATGGTGCC-GAGGCTCCCACACGACCAAGGGCCTAGTTTGCAA
* **
56207384 ATGGTGCCGAAGGCTCCCACACGACCAAGGGCTTAGTTTGCCG
1 ATGGTGCCG-AGGCTCCCACACGACCAAGGGCCTAGTTTGCAA
56207427 ATGGTGTCCGAGGCTCCCACAC
1 ATGGTG-CCGAGGCTCCCACAC
56207449 ATCCGAGTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.93
44 3 0.05
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (42 bp):
ATGGTGCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCAA
Found at i:56207571 original size:41 final size:42
Alignment explanation
Indices: 56207526--56207610 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
56207516 TGTTTGAGGT
* *
56207526 TCCCGCACATTCA-A-CTCTAAGGTGTCGATGGTGCTCAAGGC
1 TCCCGCACA-TCATAGCACTAAGGTGTCGATGGTGCCCAAGGC
* *
56207567 TCCCGCACATCATAGCACTGAGGTGTCGATGGTGCCCGAGGC
1 TCCCGCACATCATAGCACTAAGGTGTCGATGGTGCCCAAGGC
56207609 TC
1 TC
56207611 TTGCAAGACC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 3 0.08
41 10 0.26
42 25 0.66
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (42 bp):
TCCCGCACATCATAGCACTAAGGTGTCGATGGTGCCCAAGGC
Found at i:56207643 original size:43 final size:43
Alignment explanation
Indices: 56207593--56207990 Score: 163
Period size: 43 Copynumber: 9.3 Consensus size: 43
56207583 ACTGAGGTGT
*
56207593 CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGT
1 CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGC
* * * * * * *
56207636 CGATGGTGTCCAAGGCTCCTGCACA-ACCGAGCGCCCAG-GTGC
1 CGATGGTGCCCGAGGCTCTTGCA-AGACCAAGGGCCTAGTTTGC
* * * * * * * *
56207678 CGATTGTACCCGATGCT-TTCGTACGACCAAAGGCCTAGGTAGC
1 CGATGGTGCCCGAGGCTCTT-GCAAGACCAAGGGCCTAGTTTGC
* *** * * *
56207721 CGATGGTGCCAGAGGCTCCCCCAAGACCAA-GGCTTACTATT-T
1 CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGT-TTGC
* * * * ** * *
56207763 CGATGGTGTCCGAGGCTCCTGCACA-TCCGAGCACTTAG-GTGC
1 CGATGGTGCCCGAGGCTCTTGCA-AGACCAAGGGCCTAGTTTGC
* * * * * *
56207805 CGATGGTGTCCGAGGCTCTCGTACGACCAAGGGCCTAGGTTGT
1 CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGC
* * **
56207848 CGATGGTGCCTGAGCCTCCCGCACA-ACCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCTTGCA-AGACCAAGGGCCTAGTTTGC
* * * ** * *
56207891 CGATGGTGTCCGA-G-TTTTCCGCACA-TCCAAGCACCTAG-GTGT
1 CGATGGTGCCCGAGGCTCTT--GCA-AGACCAAGGGCCTAGTTTGC
* * * * *
56207933 CGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTATTTTCC
1 CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGC
56207976 CGATGGTGCCCGAGG
1 CGATGGTGCCCGAGG
56207991 TTGCCGAGGC
Statistics
Matches: 248, Mismatches: 89, Indels: 36
0.66 0.24 0.10
Matches are distributed among these distances:
41 3 0.01
42 105 0.42
43 137 0.55
44 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGC
Found at i:56207939 original size:212 final size:212
Alignment explanation
Indices: 56207550--56207950 Score: 472
Period size: 212 Copynumber: 1.9 Consensus size: 212
56207540 CTCTAAGGTG
* * *
56207550 TCGATGGTGCTCAAGGCTCCCGCACATCATAGCACTGAGGTGTCGATGGTGCCCGAGGCTCTTGC
1 TCGATGGTGCTCAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCGC
* * * *
56207615 AAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCTGCACAACCGAGCGCCCAGGTGCCG
66 AAGACCAAGGGCCTAGGTTGTCGATGGTGTCCAAGCCTCCCGCACAACCAAGCGCCCAGGTGCCG
* * *
56207680 ATTGTACCCGATGCTTTCGTACGACCAAAGGCCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
131 ATGGTACCCGATGCTTTCGCACGACCAAAGACCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
56207745 GACCAAGGCTTACTATT
196 GACCAAGGCTTACTATT
* * * * *
56207762 TCGATGGTG-TCCGAGGCTCCTGCACATCCGAGCACTTAGGTGCCGATGGTGTCCGAGGCTCTCG
1 TCGATGGTGCT-CAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCG
* * * * * *
56207826 TACGACCAAGGGCCTAGGTTGTCGATGGTG-CCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTG
65 CAAGACCAAGGGCCTAGGTTGTCGATGGTGTCC-AAGCCTCCCGCACAACCAAGCGCCCAG-GTG
** * * *
56207890 CCGATGGTGTCCGA-GTTTTCCGCAC-ATCC-AAGCACCTAGGT-GTCGATGGTGCCCGAGGCTC
128 CCGATGGTACCCGATGCTTT-CGCACGA-CCAAAG-ACCTAGGTAGCCGATGGTGCCAGAGGCTC
56207951 TCGCACGACC
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
211 3 0.02
212 128 0.82
213 26 0.17
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (212 bp):
TCGATGGTGCTCAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCGC
AAGACCAAGGGCCTAGGTTGTCGATGGTGTCCAAGCCTCCCGCACAACCAAGCGCCCAGGTGCCG
ATGGTACCCGATGCTTTCGCACGACCAAAGACCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
GACCAAGGCTTACTATT
Found at i:56207969 original size:85 final size:84
Alignment explanation
Indices: 56207587--56207990 Score: 288
Period size: 85 Copynumber: 4.8 Consensus size: 84
56207577 CATAGCACTG
* * * * *
56207587 AGGTGTCGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGC
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGC
* * *
56207652 TCCTGCACAACCGAGCGCCC
66 TCC-GCACAACCAAGCACCT
* * * * * * * *
56207672 AGGTGCCGATTGTACCCGATGCTTTCGTACGACCAAAGGCCTAGGTAGCCGATGGTG-CCAGAGG
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCC-GAGG
*
56207736 CTCC-CCCAAGACCAAGGCTTA-CT
65 CTCCGCAC-A-ACCAA-GC--ACCT
* * * *
56207759 A--TTTCGATGGTGTCCGAGGCTC-CTGCAC-ATCC-GA-GCACTTAG-GTGCCGATGGTGTCCG
1 AGGTGTCGATGGTGCCCGAGGCTCTC-GCACGA-CCAAAGGC-C-TAGTTTGCCGATGGTGTCCG
* * **
56207817 AGGCTCTCGTACGACCAAGGGCCT
62 AGGCTC-CGCACAACCAAGCACCT
* * * * *
56207841 AGGTTGTCGATGGTGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGT
1 AGG-TGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAG-
** *
56207906 TTTCCGCACATCCAAGCACCT
64 GCTCCGCACAACCAAGCACCT
* * *
56207927 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTATTTTCCCGATGGTGCCCGAGG
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGG
56207991 TTGCCGAGGC
Statistics
Matches: 240, Mismatches: 56, Indels: 47
0.70 0.16 0.14
Matches are distributed among these distances:
82 3 0.01
83 5 0.02
84 29 0.12
85 159 0.66
86 38 0.16
87 6 0.03
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (84 bp):
AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGC
TCCGCACAACCAAGCACCT
Found at i:56208116 original size:137 final size:138
Alignment explanation
Indices: 56207854--56208129 Score: 306
Period size: 137 Copynumber: 2.0 Consensus size: 138
56207844 TTGTCGATGG
* *
56207854 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGTTTTCCGCACATCC
1 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGCTCTCCGCACATCC
* * * * * *
56207919 AAGCACCTAGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTATTTTCCCGATGGTG
66 AAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACCAAAGACCTATGTTACCGATGGTG
56207984 CCCGAGGT
131 CCCGAGGT
* * ** * * *
56207992 TGCC-GAGGCTCCCGCACTACCAAGGGTTTAGTTTGTCGATGGTGTCTCGGGCTCT-CGTACATC
1 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTC-CGAGCTCTCCGCACATC
* * * * * *
56208055 CGAGCGCCTAGGTGCCAATGGTGCTCTAGGCACTCGCAC-CCCGAACGACCTATGTTACCGATGG
65 CAAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACC-AAAGACCTATGTTACCGATGG
* *
56208119 TGTCTGAGGT
129 TGCCCGAGGT
56208129 T
1 T
56208130 CTCGCACATC
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
136 2 0.02
137 102 0.90
138 9 0.08
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (138 bp):
TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGCTCTCCGCACATCC
AAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACCAAAGACCTATGTTACCGATGGTG
CCCGAGGT
Found at i:56208169 original size:42 final size:44
Alignment explanation
Indices: 56208110--56208301 Score: 166
Period size: 43 Copynumber: 4.5 Consensus size: 44
56208100 CGACCTATGT
* * *
56208110 TACCGATGGTG-TCTGAGGTTCTCGCACATCGAAG-CACCAAGG
1 TACCGATGGTGCTCCGAGGCTCCCGCACATCGAAGCCACCAAGG
* * * * *
56208152 TACCGATGGTGCT-TGAGGCTCCCACCCATCCAAG-CACGAAGG
1 TACCGATGGTGCTCCGAGGCTCCCGCACATCGAAGCCACCAAGG
** ** *
56208194 TTGTCGATGGT-CTCCGAGGCTCCCGCACATCTCAGCCACCATGG
1 -TACCGATGGTGCTCCGAGGCTCCCGCACATCGAAGCCACCAAGG
* * *
56208238 TGCCGATGCTGCT-CGAGGCTCCCGCACATCCG-AGCCACCAAAG
1 TACCGATGGTGCTCCGAGGCTCCCGCACAT-CGAAGCCACCAAGG
56208281 TACCGATGGTGC-CCGAGGCTC
1 TACCGATGGTGCTCCGAGGCTC
56208302 TCGTACGACC
Statistics
Matches: 121, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
42 36 0.30
43 76 0.63
44 9 0.07
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (44 bp):
TACCGATGGTGCTCCGAGGCTCCCGCACATCGAAGCCACCAAGG
Found at i:56208288 original size:86 final size:85
Alignment explanation
Indices: 56208108--56208301 Score: 194
Period size: 86 Copynumber: 2.3 Consensus size: 85
56208098 AACGACCTAT
* * * * * *
56208108 GTTACCGATGGTGTCTGAGGTTCTCGCACATCGAAGCACCAAGGTACCGATGGTGCTTGAGGCTC
1 GTTACCGATGGTCTCCGAGGCTCCCGCACATCGAAGCACCAAGGTACCGATGCTGCTCGAGGCTC
* * *
56208173 CCACCCATCCAAGCACGAAG
66 CCACACATCCAAGCACCAAA
** ** * *
56208193 GTTGTCGATGGTCTCCGAGGCTCCCGCACATCTCAGCCACCATGGTGCCGATGCTGCTCGAGGCT
1 GTTACCGATGGTCTCCGAGGCTCCCGCACATCGAAG-CACCAAGGTACCGATGCTGCTCGAGGCT
* *
56208258 CCCGCACATCCGAGCCACCAAA
65 CCCACACATCCAAG-CACCAAA
56208280 G-TACCGATGGTGC-CCGAGGCTC
1 GTTACCGATGGT-CTCCGAGGCTC
56208302 TCGTACGACC
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
85 28 0.32
86 52 0.60
87 7 0.08
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (85 bp):
GTTACCGATGGTCTCCGAGGCTCCCGCACATCGAAGCACCAAGGTACCGATGCTGCTCGAGGCTC
CCACACATCCAAGCACCAAA
Found at i:56208355 original size:43 final size:43
Alignment explanation
Indices: 56208281--56208447 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
56208271 GCCACCAAAG
*
56208281 TACCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCTATTT
1 TACCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCTAGTT
* **
56208324 TACGGATGGTGCCCGAGGCTC-C-TACATGACCAAGGGTTTAGTT
1 TACCGATGGTGCCCGAGGCTCTCGTAC--GACCAAGGGCCTAGTT
* * * * * * ** * *
56208367 TACCGATGGTGTCAGACGCTCCCGCAC-ATCCGAGCACCCAG-G
1 TACCGATGGTGCCCGAGGCTCTCGTACGA-CCAAGGGCCTAGTT
* * *
56208409 TGCCGATGGTGCACGAGGCTCTCGCACGACCAAGGGCCT
1 TACCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCT
56208448 TGGTTGCCGA
Statistics
Matches: 92, Mismatches: 26, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
41 3 0.03
42 29 0.32
43 57 0.62
44 1 0.01
45 2 0.02
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (43 bp):
TACCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCTAGTT
Found at i:56208435 original size:42 final size:41
Alignment explanation
Indices: 56208369--56210992 Score: 289
Period size: 43 Copynumber: 61.4 Consensus size: 41
56208359 GTTTAGTTTA
* * * * *
56208369 CCGATGGTGTCAGACGCTCCCGCACATCCGAGCACCCAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
** *
56208411 CCGATGGTGCACGAGGCTCTCGCACGA-CCAAGGGCCTTGGTTG
1 CCGATGGTGC-CGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * * * *
56208454 CCGATGCTGTCTGAGGTTCCCGCACATCCAA-CACC-AAGT-
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
*
56208493 -CGATGGTGCTC-AGGGCTC-CTGCACAT-CATAGCACCAAGGTG
1 CCGATGGTGC-CGA-GGCTCTC-GCACATCCA-AGCACCTAGGTG
* * * * * *
56208534 CCGGTGGTGCCCGAGGCTTTCACATATCCGAGCA-CTCAGGAG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCT-AGGTG
* * * * * * **
56208576 CTGATGGTGCATGATGCTTTCGTACGA-CAAAGGGCCTAGGTAG
1 CCGATGGTGC-CGAGGCTCTCGCAC-ATCCAAGCACCTAGGT-G
* * * ** *
56208619 CCGATGGTGCCCGAGGCTCCCCCAAGAT-CAAGGGCCTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGC-ACATCCAAGCACCTAG-GTG
* * **
56208662 CCGATGGTGTCCGAGGCTCCCACACATCTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * ** *
56208704 CCTATGGTGTTCGAGGCTCTCGTACGA-CCAAGGGCTTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
56208747 CCGATGGTGCCCGAGGCTC-CAGCACATCCAAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTC-GCACATCCAAGCACCTAGGTG
** **
56208789 CCGATGGTGCCTGAGGCTCTCGCACGA-CCAAGGGCCTATTTTG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAAGCACCTA-GGTG
* * * * * *
56208832 TCAATGGAGCCCGAGGCTCTAG-AGCCTCCCACA-CGACCAAGGGTTTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCA-CAT-CCA-AGC-ACC-------TAG-GTG
* * *
56208884 CCGATGATGTCTGAGGCTCCCGCACATCCAAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* **
56208926 TCGATGGTGCTCGAGGCTC-CTGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTGC-CGAGGCTCTC-GCAC-ATCCAAGCACCTAGG-TG
* * * * * * *
56208969 TCGGTAGTGTTCGAGGCTCCCACACAT-CATAGCACCTCGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * *
56209011 CTGATGGTGCCCGAGGCTCTCGTATGA-CCAAAG-GCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCA-CATCC-AAGCACCTAGG-TG
* ** * * * *
56209054 CTGACAGTGTCCAAGGCTCCCACACAT-CATAGCACCGAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * * **
56209096 CCGGTGGTGCCCGAGGCTCCCGGACAACTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * ** * *
56209138 CCAATGGTGTCCGAGCCTTTCGCATGA-CCAAGGGCCTAAGTTA
1 CCGATGGTG-CCGAGGCTCTCGCA-CATCCAAGCACCT-AGGTG
* * * ** *
56209181 CCGATGGTTTCCGAGGCTCCCGCATGA-CCAAGGGCCTAGTTTG
1 CCGATGG-TGCCGAGGCTCTCGCA-CATCCAAGCACCTAG-GTG
* **** *
56209224 CCGATGATTTTTTAGGCTCCCGCACATCCAAGCACCTA--TG
1 CCGATG-GTGCCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * *
56209264 ACTCGATGGTGCCTGAGGCACTTGCACGA-CCAAGGGCCTATTTTACCAATGGTG
1 -C-CGATGGTGCC-GAGGCTCTCGCAC-ATCCAA--G-C------ACCTA-GGTG
* * * * * **** *
56209318 CC-CTAGTCTCCCGAGCCTCTCGCACAACCAAGGGTTTAGTTTG
1 CCGAT-G-GTGCCGAGGCTCTCGCACATCCAAGCACCTAG-GTG
*
56209361 TCGATGGTGTCC-AGGGCTCTCGCACATCCGAACGC-CC-AGGTG
1 CCGATGGTG-CCGA-GGCTCTCGCACATCC-AA-GCACCTAGGTG
* * * * ** * *
56209403 CCGATGGCGCCCTAGG-TAGTCGCACGA-CGAAGGGCCTATGTTA
1 CCGATGGTG-CCGAGGCT-CTCGCAC-ATCCAAGCACCTA-GGTG
* * *
56209446 CCGATGGTGTCCGAGGTTCTAGCACATCCAAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * **
56209488 TCGATGGTACTCGAGGCTCCCGCATGA-CCAAGGGCCTAGGTTG
1 CCGATGGTGC-CGAGGCTCTCGCA-CATCCAAGCACCTAGG-TG
* * * *
56209531 CCTG-TAGTGTCTGAGGCTCCCGCACAT-CATAGCACCAAGGTG
1 CC-GATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * *
56209573 CCGATGGTGCCCGAGGCTCCCACACGA-CCAAAGGCA--TAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCC-AA-GCACCTAG-GTG
* * * * * * *
56209616 CCGATGGCGTCCGAGGCTCCCCCACATCCGAGCGCCCAGGTA
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * **
56209658 CCGATGATGCCCGAGGCTTTCACACGAAT--AAGGGCCTAGGTAG
1 CCGATGGTG-CCGAGGCTCTCGCAC--ATCCAAGCACCTAGGT-G
* * * *** *
56209701 CCCATGGTGCCTGAGGCTTTCGCA-AGACCAAGGGTCTAGTTTG
1 CCGATGGTGCC-GAGGCTCTCGCACA-TCCAAGCACCTAG-GTG
* * * * *
56209744 CCGATGGCGTCCAAGGCTCTCGCACATCCGAGCGGCC-AAGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGC-ACCTAGGTG
* * * **
56209786 TCGATGTTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGG-TG
* * **
56209829 CCGATGGTGCCCAAGGCTCTCGTACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
** * * * *
56209872 TTGATGGTGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * ** *
56209914 TCGATGGTGCTCAAGGCTCTTACACAT-CATAGCACCGAGGTG
1 CCGATGGTGC-CGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * ** * *
56209956 CCGGTTGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTA
1 CCGATGGT-GCCGAGGCTCTCGCAC-ATCCAAGCACCTAG-GTG
* * * **
56209999 CCGATAGTGTCCGAGGCT-TCTGCACATCCGAGCACCCAGAAG
1 CCGATGGTG-CCGAGGCTCTC-GCACATCCAAGCACCTAGGTG
* * * **
56210041 CCGATGGTGCCTGATGCTTTCGTACGA-CCAAGGGCCTAGGTAG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAAGCACCTAGGT-G
* * * * ** *
56210084 CCGATGGTACCCGAGGCTCCCCCAAAAT-CAAGGGCCTAGTTTG
1 CCGATGGT-GCCGAGGCTCTCGC-ACATCCAAGCACCTAG-GTG
* * * * * **
56210127 CCGAAGGTGTCTGAGTCTCCCGTACATCTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * **
56210169 TCAATGGTGTCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * * * * *
56210212 CCGATGGTCCTCGAGGCTCCCACACAACCAAGGACCTAGTTTG
1 CCGATGGTGC-CGAGGCTCTCGCACATCCAAGCACCTAG-GTG
** * * * * * *
56210255 CCGATAATGTCTGAGGCTCCCGTACATCCAGGCGCCTAGGTA
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * *
56210297 CCGATGGTGCCCGAGGCTCTCGCACGA-CCAAAG-GCCTAGTTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCC-AAGCACCTAG-GTG
* *
56210340 CCGATGGTGTCTGGGGCT-TCCGCACATCCGAACGC-CC-AGGTG
1 CCGATGGTG-CCGAGGCTCT-CGCACATCC-AA-GCACCTAGGTG
* * * * ** * *
56210382 CCGATGGTGCCCTAGGCACTCACACGA-CGAAGGGCCTATGTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTA-GGTG
* * * * *
56210425 TCGATGGTGTCCTAGGTTCTCGCACGTCCAAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * ** *
56210467 TCGATGGTGATCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * ** * * *
56210510 CTGATAGTTTTCGAGGCTCTCGTACAT-CATTGTA-CTGAGGTG
1 CCGAT-GGTGCCGAGGCTCTCGCACATCCA-AGCACCT-AGGTG
* **
56210552 CCGATGGTGCCCGAGGCTCTTGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* ** * * * * *
56210595 CTGACAGTGTCCAAGGCTCCCGTACAT-CATAGCATCGAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* ** * *
56210637 CCGATGGTGCCCGAGGCT-TCCGAACGA-CCAAGGGCGTAGTTTG
1 CCGATGGTG-CCGAGGCTCT-CGCAC-ATCCAAGCACCTAG-GTG
* * * * *
56210680 TCGATGTTGTCTGAGGCTCTCGCACATCCGAGCACCCAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * * *
56210722 TCGATGGTACCTGAGGCTTTCACACGA-CTAAAG-GCCTAGGTAG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATC-CAAGCACCTAGGT-G
* * * * *
56210765 CCGATGGTGCCCGAGGCTCCCGCA-AGACTGAAG-GCCTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCACA-TC-CAAGCACCTAG-GTG
* * * * * *
56210808 CTGATGGTGTCTGAGGCT-TGCGCACATCCAAACGCCCAGGTA
1 CCGATGGTG-CCGAGGCTCT-CGCACATCCAAGCACCTAGGTG
* *
56210850 CCGATGGT-CCTGAGGCTCTCGTACGA-CCAAGGGA-CTAGGTTG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAA-GCACCTAGG-TG
* **
56210892 CCGATGGTGCCCGAGGCTCTCGCACAACCAAG-GGCTGAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCT-AGG-TG
* * * * * *
56210935 TCGATGGTGTCTGAGGCTCCCGCACATCCTAGTACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
56210977 CCGATGGTGCCTGAGG
1 CCGATGGTGCC-GAGG
56210993 ACCCCACACG
Statistics
Matches: 1832, Mismatches: 533, Indels: 434
0.65 0.19 0.16
Matches are distributed among these distances:
37 5 0.00
38 18 0.01
39 4 0.00
40 10 0.01
41 54 0.03
42 739 0.40
43 888 0.48
44 50 0.03
45 5 0.00
50 5 0.00
51 10 0.01
52 37 0.02
53 5 0.00
54 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (41 bp):
CCGATGGTGCCGAGGCTCTCGCACATCCAAGCACCTAGGTG
Found at i:56208711 original size:85 final size:86
Alignment explanation
Indices: 56208610--56210315 Score: 376
Period size: 85 Copynumber: 19.8 Consensus size: 86
56208600 CGACAAAGGG
* * * * *
56208610 CCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGATCAAGGGCCTAGTTTGCCGATGGTGTCCG
1 CCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
**
56208675 AGGCTCCCA-CACATCTGAGCA
65 AGGCTCCCAGCACATCCAAGCA
* ** * * *
56208696 CCTAGGTGCCTATGGTGTTCGAGGCTCTCGTACGACCAAGGGCTTAGGTTGCCGATGGTGCCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
56208761 GGCT-CCAGCACATCCAAGCA
66 GGCTCCCAGCACATCCAAGCA
* * * * *
56208781 CCTAGGTGCCGATGGTGCCTGAGGCTCTCGCACGACCAAGGGCCTATTTTGTCAATGGAGCCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
** * **
56208846 GGCTCTAGAGCCTCCCACACGACCAAGGG
66 GGCTC-----CC-AGCACA--TCCAAGCA
** * * * * * ** * * *
56208875 TTTAGTTTGCCGATGATGTCTGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGTCGATGGTGCTC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCC
* **
56208938 GAGGCT-CCTGCACGA-CCAAGGG
64 GAGGCTCCCAGCAC-ATCCAAGCA
* * * ** * * * ** * * *
56208960 CCTAGGTTGTCGGTAGTGTTCGAGGCTCCCACAC-ATCATAGCACCTCG-GTGCTGATGGTGCCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCC
* * * *
56209023 GAGGCTCTC-GTATGA-CCAAAG-G
64 GAGGCTCCCAGCA-CATCC-AAGCA
* ** * * * * * ** * * *
56209045 CCTAGGTTGCTGACAGTGTCCAAGGCTCCCACAC-ATCATAGCACCGAG-GTGCCGGTGGTGCCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCC
* * **
56209108 GAGGCTCCC-GGACAACTGAGCA
64 GAGGCTCCCAGCACATCCAAGCA
* * * * * * **
56209130 CCTAGGTGCCAATGGTGTCCGAGCCTTTCGCATGACCAAGGGCCTAAG-TTACCGATGGTTTCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT-AGTTTGCCGATGGTGCCCG
* **
56209194 AGGCTCCC-GCATGA-CCAAGGG
65 AGGCTCCCAGCA-CATCCAAGCA
* * ***** * **
56209215 CCTAGTTTGCCGATGATTTTTTAGGCTCCCGCAC-ATCCAAGCACCTA---TGACTCGATGGTGC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTG-C-CGATGGTGC
* * **
56209276 CTGAGGC-ACTTGCACGA-CCAAGGGCCTATTTTA
62 CCGAGGCTCCCAGCAC-ATCCAA--G-C------A
* * * * * * ** * *
56209309 CCAATGGTGCC-CTAGTCTCCCGAGCCTCTCGCACAACCAAGGGTTTAGTTTGTCGATGGTGTCC
1 CCTA-GGTGCCGATGGT-GCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCC
*
56209373 -AGGGCTCTC-GCACATCCGAACGC-
64 GA-GGCTCCCAGCACATCC-AA-GCA
* * * * * *
56209396 CC-AGGTGCCGATGGCGCCCTAGG-TAGTCGCACGACGAAGGGCCTA-TGTTACCGATGGTGTCC
1 CCTAGGTGCCGATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGT-TTGCCGATGGTGCCC
* *
56209458 GAGG-TTCTAGCACATCCAAGCA
64 GAGGCTCCCAGCACATCCAAGCA
* * * * * * * * * *
56209480 CCAAGGTGTCGATGGTACTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCTG-TAGTGTCTG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCC-GATGGTGCCCG
56209544 AGGCTCCC-GCACAT-CATAGCA
65 AGGCTCCCAGCACATCCA-AGCA
* * * * * * *
56209565 CCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
* * *
56209630 GGCTCCC-CCACATCCGAGCG
66 GGCTCCCAGCACATCCAAGCA
* * * * * ** * * * *
56209650 CCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCTAGGTAGCCCATGGTGCCTGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
** * **
56209715 GGCTTTC-GCA-AGACCAAGGG
66 GGCTCCCAGCACA-TCCAAGCA
* * * * * * * * *
56209735 TCTAGTTTGCCGATGGCGTCCAAGGCTCTCGCAC-ATCCGAGCGGCCAAG--TGTCGATGTTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGCC
* * **
56209797 CGAGGCTCTC-GCACAACCAAGGG
63 CGAGGCTCCCAGCACATCCAAGCA
* * * ** * *
56209820 CCTAGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
*
56209885 AGGCTCCC-GCACATCCTAGCA
65 AGGCTCCCAGCACATCCAAGCA
* * * * ** * ** * * * * *
56209906 CCAAGGTGTCGATGGTGCTCAAGGCTCTTACAC-ATCATAGCACCGAG-GTGCCGGTTGTGGCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCCG
**
56209969 AGGCTCCC-GCACGA-CCAAGGG
65 AGGCTCCCAGCAC-ATCCAAGCA
* * * * * ** * **
56209990 CCTAGTTTACCGATAGTGTCCGAGGCT-TCTGCAC-ATCCGAGCACCCAG-AAGCCGATGGTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTC-GCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCC
* * ** * **
56210052 TGATGCTTTC-GTACGA-CCAAGGG
63 CGAGGCTCCCAGCAC-ATCCAAGCA
* * * ** * * * *
56210075 CCTAGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTG
1 CCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
* * **
56210140 AGTCTCCC-GTACATCTGAGCA
65 AGGCTCCCAGCACATCCAAGCA
* * * *
56210161 CCTAGGTGTCAATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CCTCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCC-CG
* *
56210225 AGGCTCCCA-CACAACCAAGGA
65 AGGCTCCCAGCACATCCAAGCA
* ** * * * * * *
56210246 CCTAGTTTGCCGATAATGTCTGAGGCTCCCGTAC-ATCC-AGGCGCCTAG-GTACCGATGGTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGG-GCCTAGTTTGCCGATGGTGCC
56210308 CGAGGCTC
63 CGAGGCTC
56210316 TCGCACGACC
Statistics
Matches: 1187, Mismatches: 346, Indels: 175
0.69 0.20 0.10
Matches are distributed among these distances:
83 3 0.00
84 83 0.07
85 801 0.67
86 165 0.14
87 12 0.01
88 3 0.00
91 2 0.00
92 4 0.00
93 2 0.00
94 54 0.05
95 54 0.05
96 2 0.00
97 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (86 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
GGCTCCCAGCACATCCAAGCA
Found at i:56208985 original size:43 final size:42
Alignment explanation
Indices: 56208896--56209029 Score: 121
Period size: 42 Copynumber: 3.2 Consensus size: 42
56208886 GATGATGTCT
*
56208896 GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATGGTGCTC
1 GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATAGTGCTC
* ** * *
56208938 GAGGCTCCTGCACGA-CCAAGGGCCTAGGTTGTCGGTAGTGTTC
1 GAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGTCGATAGTGCTC
* * * *
56208981 GAGGCTCCCACACAT-CATAGCACCTCGGTG-CTGATGGTGCCC
1 GAGGCTCCCGCACATCCA-AGCACCTAGGTGTC-GATAGTGCTC
56209023 GAGGCTC
1 GAGGCTC
56209030 TCGTATGACC
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 41 0.57
43 30 0.42
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (42 bp):
GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATAGTGCTC
Found at i:56209662 original size:477 final size:476
Alignment explanation
Indices: 56208613--56209718 Score: 1097
Period size: 477 Copynumber: 2.3 Consensus size: 476
56208603 CAAAGGGCCT
* * * * *
56208613 AGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGATCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
1 AGGT-GCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGG
* * * * * * * *
56208678 CTCCCACACATCTGAGCACCTAGGTGCCTATGGTGTTCGAGGCTCTCGTACGACCAAGGGCTTAG
65 CTCCCACACATCCGAGCGCCAAGGTACCGATGGTGTTCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
56208743 GTTGCCGATGGTGCCCGAGGCTCCAGCACATCCAAGCACCTAGGTGCCGATGGTGCCTGAGGCTC
130 GTTGCCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTA-GTGCCGATGGTGCCTGAGGCAC
** * *
56208808 TCGCACGACCAAGGGCCTATTTTGTCAATGGAGCCCGAGGCTCTAGAGCCTCCCACACGACCAAG
194 TCGCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAACCAAG
* * * *
56208873 GGTTTAGTTTGCCGATGATGTCTGAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATGGTGCTC
259 GGTTTAGTTTGCCGATGATGTCAGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGCGCCC
* ** * *
56208938 GAGGCTCCTGCACGACCAAGGGCCTAGGTTGTCGGTAGTGTTCGAGGCTCCCACACATCATAGCA
324 GAGGCTACTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCACACATCATAGCA
** * * *
56209003 CCTCGGTGCTGATGGTGCCCGAGGCTCTCGTATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAA
389 CCAAGGTGCTGATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAA
*
56209068 GGCTCCCACACATCATAGCACCG
454 GGCTCCCACACATCATAGCACCA
* ** ** * *
56209091 AGGTGCCGGTGGTGCCCGAGGCTCCCGGAC-AACTGA-GCACCTAG-GTGCCAATGGTGTCCGAG
1 AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCA--TAGTTTGCCGATGGTGTCCGAG
* ** * * * * * *
56209153 CCTTTCGCATGA-CCAAGGGCCTAAGTTACCGATGGT-TTCCGAGGCTCCCGCATGACCAAGGGC
64 GCTCCCACA-CATCCGAGCGCC-AAGGTACCGATGGTGTT-CGAGGCTCCCGCACGACCAAGGGC
* ***** *
56209216 CTAGTTTGCCGATGATTTTTTAGGCTCCCGCACATCCAAGCACCTA-TGACTCGATGGTGCCTGA
126 CTAGGTTGCCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTAGTG-C-CGATGGTGCCTGA
* * * * * * *
56209280 GGCACTTGCACGACCAAGGGCCTATTTTACCAATGGTGCCCTAGTCTCCCGAGCCTCTCGCACAA
189 GGCACTCGCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAA
* * *
56209345 CCAAGGGTTTAGTTTGTCGATGGTGTCCAG-GGCTCTCGCACATCCGAACGC-CC-AGGTGCCGA
254 CCAAGGGTTTAGTTTGCCGATGATGT-CAGAGGCTCCCGCACATCC-AA-GCACCTAGGTGCCGA
* * * * * * *
56209407 TGGCGCCCTAGG-TAGTCGCACGACGAAGGGCCTATGTTACCGATGGTGTCCGAGG-TTCTAGCA
316 TGGCGCCCGAGGCTACT-GCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCA-CA
* *
56209470 CATCCA-AGCACCAAGGTG-TCGATGGTACTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCC
379 CAT-CATAGCACCAAGGTGCT-GATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTG-C
* ** *
56209533 TG-TAGTGTCTGAGGCTCCCGCACATCATAGCACCA
441 TGACAGTGTCCAAGGCTCCCACACATCATAGCACCA
* *
56209568 AGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGGC
* * * ** ** * **
56209633 TCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCTAGG
66 TCCCACACATCCGAGCGCCAAGGTACCGATGGTGTTCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * * *
56209698 TAGCCCATGGTGCCTGAGGCT
131 TTGCCGATGATGCCCGAGGCT
56209719 TTCGCAAGAC
Statistics
Matches: 494, Mismatches: 114, Indels: 41
0.76 0.18 0.06
Matches are distributed among these distances:
475 4 0.01
476 37 0.07
477 403 0.82
478 45 0.09
479 5 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.21
Consensus pattern (476 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGGC
TCCCACACATCCGAGCGCCAAGGTACCGATGGTGTTCGAGGCTCCCGCACGACCAAGGGCCTAGG
TTGCCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTAGTGCCGATGGTGCCTGAGGCACTC
GCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAACCAAGGG
TTTAGTTTGCCGATGATGTCAGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGCGCCCGA
GGCTACTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCACACATCATAGCACC
AAGGTGCTGATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAAGG
CTCCCACACATCATAGCACCA
Found at i:56209734 original size:43 final size:43
Alignment explanation
Indices: 56209334--56210987 Score: 396
Period size: 43 Copynumber: 38.9 Consensus size: 43
56209324 TCTCCCGAGC
** * * * *
56209334 CTCTCGCACAACCAAGGGTTTAGTTTGTCGATGGTGTCCAGGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
56209377 CTCTCGCACATCCGAA-CGCCCAGG-TGCCGATGGCGCCCTAGG
1 CTCTCGCACAACC-AAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
56209419 -TAGTCGCACGACGAAGGGCCTATGTTACCGATGGTGTCCGAGG
1 CT-CTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** * * * * *
56209462 TTCTAGCACATCCAAGCACCAAGG-TGTCGATGGTACTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** * * **
56209504 CTCCCGCATGACCAAGGGCCTAGGTTGCCTG-TAGTGTCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCC-GATGGTGCCCAAGG
* * ** * *
56209547 CTCCCGCAC-ATCATAGCACCAAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * * *
56209589 CTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * * *
56209632 CTCCCCCACATCCGAGCGCCCAGG-TACCGATGATGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * **
56209674 CTTTCACACGAA-TAAGGGCCTAGGTAGCCCATGGTGCCTGAGG
1 CTCTCGCAC-AACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
56209717 CTTTCGCA-AGACCAAGGGTCTAGTTTGCCGATGGCGTCCAAGG
1 CTCTCGCACA-ACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *
56209760 CTCTCGCACATCCGAGCGGCC-AAG-TGTCGATGTTGCCCGAGG
1 CTCTCGCACAACCAAG-GGCCTAGGTTGCCGATGGTGCCCAAGG
56209802 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** *
56209845 CTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** * * *
56209888 CTCCCGCACATCCTAGCACCAAGG-TGTCGATGGTGCTCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
** * ** * * * * *
56209930 CTCTTACAC-ATCATAGCACCGAGG-TGCCGGTTGTGGCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
56209972 CTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** * ** ** *
56210015 CT-TCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATG
1 CTCTC-GCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *
56210057 CTTTCGTACGACCAAGGGCCTAGGTAGCCGATGGTACCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * ** *
56210100 CTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTGAGT
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** ** * * * *
56210143 CTCCCGTACATCTGAGCACCTAGG-TGTCAATGGTGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* *
56210185 CTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CCTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCC-CAAGG
* * * * ** * **
56210228 CTCCCACACAACCAAGGACCTAGTTTGCCGATAATGTCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
56210271 CTCCCGTACATCC-AGGCGCCTAGG-TACCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGG-GCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * ***
56210313 CTCTCGCACGACCAAAGGCCTAGTTTACCGATGGTGTCTGGGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *
56210356 CT-TCCGCACATCCGAA-CGCCCAGG-TGCCGATGGTGCCCTAGG
1 CTCT-CGCACAACC-AAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * ** * *
56210398 CACTCACACGACGAAGGGCCTATGTTATCGATGGTGTCCTAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** ** * * ** *
56210441 TTCTCGCACGTCCAAGCACCAAGG-TGTCGATGGTGATCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *** *
56210483 CTCCCGCACGACCAAGGGCCTAGGTTACTGATAGTTTTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** ** *
56210526 CTCTCGTAC-ATCATTGTACTGAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCT-AGGTTGCCGATGGTGCCCAAGG
* * * ** *
56210568 CTCTTGCACGACCAAGGGCCTAGGTTGCTGACAGTGTCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *** * *
56210611 CTCCCGTAC-ATCATAGCATCGAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * **
56210653 CT-TCCGAACGACCAAGGGCGTAGTTTGTCGATGTTGTCTGAGG
1 CTCT-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** * * * **
56210696 CTCTCGCACATCCGAGCACCCAGG-TGTCGATGGTACCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
56210738 CTTTCACACGACTAAAGGCCTAGGTAGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * **
56210781 CTCCCGCA-AGACTGAA-GGCCTAGTTTGCTGATGGTGTCTGAGG
1 CTCTCGCACA-AC-CAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** * * **
56210824 CT-TGCGCACATCCAAACGCCCAGG-TACCGATGGT-CCTGAGG
1 CTCT-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *
56210865 CTCTCGTACGACCAAGGGACTAGGTTGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * **
56210908 CTCTCGCACAACCAAGGG-CTGAGGTTGTCGATGGTGTCTGAGG
1 CTCTCGCACAACCAAGGGCCT-AGGTTGCCGATGGTGCCCAAGG
* * * ** *
56210951 CTCCCGCACATCCTAGTACCAAGG-TGCCGATGGTGCC
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCC
56210988 TGAGGACCCC
Statistics
Matches: 1134, Mismatches: 421, Indels: 113
0.68 0.25 0.07
Matches are distributed among these distances:
41 33 0.03
42 452 0.40
43 633 0.56
44 16 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
Found at i:56209747 original size:128 final size:128
Alignment explanation
Indices: 56209568--56210348 Score: 653
Period size: 128 Copynumber: 6.1 Consensus size: 128
56209558 CATAGCACCA
* * * * *
56209568 AGGT-GCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * * * *
56209632 CTCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * ** * * *
56209695 AGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGATGGCGTCCAAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* ** * ** *
56209760 CTCTCGCACATCCGAGCGGCCAAGTGTCGATGTTGCCCGAGGCTCTCGCAC-AACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAA-CAAGGGCCT
* * * * * * ** *
56209823 AGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCAAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * ** * * ** * ** *
56209888 CTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTACAC-ATCATAGCACCG
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACA-AGGGCCT
* * * * * *
56209951 AGGT-GCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * * * * * *
56210015 CTTCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATGCTTTCGTACGACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTA-CCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * * * * * *
56210078 AGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTGAGT
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * ** * * *
56210143 CTCCCGTACATCTGAGCACCTAGGTGTCAATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * * ** *
56210206 AGGTTGCCGATGGT-CCTCGAGGCTCCCACACA-ACCAAGGACCTAGTTTGCCGATAATGTCTGA
1 AGGTAGCCGATGGTGCC-CGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* * * * *
56210269 GGCTCCCGTACATCC-AGGCGCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCC
64 GGCTCCCGCACATCCGA-GCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCC
56210333 T
128 T
*
56210334 AGTTTA-CCGATGGTG
1 AG-GTAGCCGATGGTG
56210349 TCTGGGGCTT
Statistics
Matches: 520, Mismatches: 122, Indels: 22
0.78 0.18 0.03
Matches are distributed among these distances:
126 1 0.00
127 101 0.19
128 415 0.80
129 3 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (128 bp):
AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
Found at i:56210274 original size:383 final size:383
Alignment explanation
Indices: 56209553--56210283 Score: 883
Period size: 383 Copynumber: 1.9 Consensus size: 383
56209543 GAGGCTCCCG
*
56209553 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCC
1 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
* * *
56209618 GATGGCGTCCGAGGCTCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACAC
66 GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAACCGATGATGCCCGAGGCTTTCACAC
* * * ** * * *
56209683 GAATAAGGGCCTAGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGA
131 GAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCGA
* * * * *
56209748 TGGCGTCCAAGGCTCTCGCACATCCGAGCGGCCAAGTGTCGATGTTGCCCGAGGCTCTCGCACAA
196 AGGCGTCCAAGGCTCCCGCACATCCGAGCGACCAAGTGTCAATGGTGCCCGAGGCTCTCGCACAA
* ** * * ** *
56209813 CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATG
261 CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACCAAGGACCTAGGTTGCCGATA
*
56209878 GTGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
326 ATGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
* * * * * * *
56209936 CACATCATAGCACCGAGGTGCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACC
1 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
* * ** * * * **
56210001 GATAGTGTCCGAGGCTTCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATGCTTTCGTA
66 GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAA-CCGATGATGCCCGAGGCTTTCACA
* * *
56210065 CGACCAAGGGCCTAGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCG
130 CGAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCG
* ** * * * * *
56210130 AAGGTGTCTGAGTCTCCCGTACATCTGAGC-ACCTAGGTGTCAATGGTGTCCGAGGCTCTCGCAC
195 AAGGCGTCCAAGGCTCCCGCACATCCGAGCGACC-AAGTGTCAATGGTGCCCGAGGCTCTCGCAC
* * *
56210194 GACCAAGGGCCTAGGTTGCCGATGGT-CCTCGAGGCTCCCACACAACCAAGGACCTAGTTTGCCG
259 AACCAAGGGCCTAGGTTGCCGATGGTGCC-CAAGGCTCCCACACAACCAAGGACCTAGGTTGCCG
** *
56210258 ATAATGTCTGAGGCTCCCGTACATCC
323 ATAATGTCCAAGGCTCCCGCACATCC
56210284 AGGCGCCTAG
Statistics
Matches: 286, Mismatches: 59, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
382 6 0.02
383 280 0.98
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (383 bp):
CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAACCGATGATGCCCGAGGCTTTCACAC
GAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCGA
AGGCGTCCAAGGCTCCCGCACATCCGAGCGACCAAGTGTCAATGGTGCCCGAGGCTCTCGCACAA
CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACCAAGGACCTAGGTTGCCGATA
ATGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
Found at i:56210327 original size:85 final size:85
Alignment explanation
Indices: 56209691--56211014 Score: 541
Period size: 85 Copynumber: 15.6 Consensus size: 85
56209681 ACGAATAAGG
* * * * * * * *
56209691 GCCTAGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGATGGCGTCC
1 GCCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* * *
56209756 AAGGCTCTCGCACATCCGAGC
65 GAGGCTCCCGCACATCCAAGC
* * * * * * * *
56209777 GGCC-AAGTGTCGATGTTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 -GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* * * *
56209841 AAGGCTCTCGTACGA-CCAAGG
65 GAGGCTCCCGCAC-ATCCAAGC
** * * * * ** * * * *
56209862 GCCTAGGTTGTTGATGGTGTCCAAGGCTCCCGCAC-ATCCTAGCACCAAG-GTGTCGATGGTG-C
1 GCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGTC
* ***
56209924 TCAAGGCTCTTACACAT-CATAGC
64 T-GAGGCTCCCGCACATCCA-AGC
* * * * * * * *
56209947 ACCGAGGTGCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* * *
56210012 AGGCTTCTGCACATCCGAGC
66 AGGCTCCCGCACATCCAAGC
* * ** * * * * * * * ** *
56210032 ACCCAGAAGCCGATGGTGCCTGATGCTTTCGTACGACCAAGGGCCTAGGTAGCCGATGGTACCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* * *
56210097 AGGCTCCCCCAAAAT-CAAGG
66 AGGCTCCCGC-ACATCCAAGC
* * * * * * * ** ** * * * *
56210117 GCCTAGTTTGCCGAAGGTGTCTGAGTCTCCCGTAC-ATCTGAGCACCTAG-GTGTCAATGGTGTC
1 GCCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGTC
* * *
56210180 CGAGGCTCTCGCACGA-CCAAGG
64 TGAGGCTCCCGCAC-ATCCAAGC
* * * * *
56210202 GCCTAGGTTGCCGATGGT-CCTCGAGGCTCCCACACAACCAAGGACCTAGTTTGCCGATAATGTC
1 GCCTAGG-TGCCGATGGTGCC-CGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTC
* *
56210266 TGAGGCTCCCGTACATCCAGGC
64 TGAGGCTCCCGCACATCCAAGC
* * * *
56210288 GCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTACCGATGGTGTCTG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* *
56210353 GGGCTTCCGCACATCCGAA-C
66 AGGCTCCCGCACATCC-AAGC
* * * * * *
56210373 GCCCAGGTGCCGATGGTGCCCTAGGCACTCACACGACGAAGGGCCTATGTTAT--CGATGGTGTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA-GTT-TGCCGATAGTGT-
* * *
56210436 CT-AGGTTCTCGCACGTCCAAGC
63 CTGAGGCTCCCGCACATCCAAGC
* * * ** * * * * *
56210458 ACCAAGGTGTCGATGGTGATCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGATAGT-TTTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT-
* * *
56210522 GAGGCTCTCGTACAT-CATTG-
65 GAGGCTCCCGCACATCCA-AGC
** * * * * *
56210542 TACTGAGGTGCCGATGGTGCCCGAGGCTCTTGCACGACCAAGGGCCTAGGTTGCTGACAGTGTCC
1 GCCT-AGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* *
56210607 AAGGCTCCCGTACAT-CATAGC
65 GAGGCTCCCGCACATCCA-AGC
** * * * *
56210628 ATCGAGGTGCCGATGGTGCCCGAGGCT-TCCGAACGACCAAGGGCGTAGTTTGTCGAT-GTTGTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCT-CGCACGACCAAGGGCCTAGTTTGCCGATAG-TGTC
* *
56210691 TGAGGCTCTCGCACATCCGAGC
64 TGAGGCTCCCGCACATCCAAGC
* * * * * * * * * * * * * *
56210713 ACCCAGGTGTCGATGGTACCTGAGGCTTTCACACGACTAAAGGCCTAGGTAGCCGATGGTGCCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* *
56210778 AGGCTCCCGCA-AGACTGAAG-
66 AGGCTCCCGCACA-TC-CAAGC
* * * * ** * * *
56210798 GCCTAGTTTGCTGATGGTGTCTGAGGCT-TGCGCAC-ATCCAAACGCCCAG-GTACCGAT-G-GT
1 GCCTAG-GTGCCGATGGTGCCCGAGGCTCT-CGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGT
* * *
56210858 CCTGAGGCTCTCGTACGA-CCAAGG
63 -CTGAGGCTCCCGCAC-ATCCAAGC
* * * * *
56210882 GACTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGG-CTGAGGTTGTCGATGGTGTC
1 GCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT-AGTTTGCCGATAGTGTC
* *
56210946 TGAGGCTCCCGCACATCCTAGT
64 TGAGGCTCCCGCACATCCAAGC
* * * * *
56210968 ACCAAGGTGCCGATGGTGCCTGAGGAC-CCCACACGACCAAGGGCCTA
1 GCCTAGGTGCCGATGGTGCCCGAGG-CTCTCGCACGACCAAGGGCCTA
56211015 TGCTACTGGA
Statistics
Matches: 925, Mismatches: 253, Indels: 120
0.71 0.19 0.09
Matches are distributed among these distances:
83 7 0.01
84 96 0.10
85 647 0.70
86 169 0.18
87 6 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (85 bp):
GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
AGGCTCCCGCACATCCAAGC
Found at i:56210941 original size:127 final size:127
Alignment explanation
Indices: 56210635--56211007 Score: 373
Period size: 127 Copynumber: 2.9 Consensus size: 127
56210625 AGCATCGAGG
* * *
56210635 TGCCGATGGTGCCCGAGGCT-TCCGAACGACCAAGGGC-GTAGTTTGTCGATGTTGTCTGAGGCT
1 TGCCGATGGTGCCCGAGGCTCT-CGCACAACCAAGGGCTG-AGTTTGTCGATGGTGTCTGAGGCT
* * ** * * *
56210698 CTCGCACATCCGAGCACCCAGGTGTCGATGGTACCTGAGGCTTTCACACGACTAAAGGCCTAGGT
64 -TCGCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGGT
* * * *
56210763 AGCCGATGGTGCCCGAGGCTCCCGCA-AGACTGAAGGCCT-AGTTTG-CTGATGGTGTCTGAGGC
1 TGCCGATGGTGCCCGAGGCTCTCGCACA-AC-CAAGGGCTGAGTTTGTC-GATGGTGTCTGAGGC
* ** *
56210825 TTGCGCACATCCAAACGCCCAGGTACCGATGGT-CCTGAGGCTCTCGTACGACCAAGGGACTAGG
63 TT-CGCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGG
56210889 T
127 T
* *
56210890 TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGGTTGTCGATGGTGTCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGTTTGTCGATGGTGTCTGAGGCT-T
* ** * * * *
56210955 CGCACATCCTAGTACCAAGGTGCCGATGGTGCCTGAGGAC-CCCACACGACCAA
65 CGCACATCCAAACACCCAGGTACCGATGGTACCTGAGG-CTCTCACACGACCAA
56211008 GGGCCTATGC
Statistics
Matches: 200, Mismatches: 33, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
126 6 0.03
127 99 0.50
128 89 0.44
129 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGTTTGTCGATGGTGTCTGAGGCTTC
GCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGGT
Found at i:56213273 original size:75 final size:75
Alignment explanation
Indices: 56213146--56213305 Score: 266
Period size: 75 Copynumber: 2.1 Consensus size: 75
56213136 GATGCAACAA
* *
56213146 GTCCCTCCCTAATCATAAAGGTAGAATTCCAATATCATTACATGTGACGTACCCAACAATGAACG
1 GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
*
56213211 AATCGTCCTG
66 AATCGTCCCG
* * *
56213221 GTCCCTCCCCAATCCTAAAGGTAGAATTCAAATATCGTTACATGTGATGTACCCAACAATGAACG
1 GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
56213286 AATCGTCCCG
66 AATCGTCCCG
56213296 GTCCCTCCCC
1 GTCCCTCCCC
56213306 TTGGTCATGC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (75 bp):
GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
AATCGTCCCG
Found at i:56213365 original size:43 final size:43
Alignment explanation
Indices: 56213303--56213388 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
56213293 CCGGTCCCTC
* *
56213303 CCCTTGGTCATGCGTGAGCCTCGGGCACCATCGACAACCTAGG
1 CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
* **
56213346 CCCTTGGCCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
1 CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
56213389 TGCTTCATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.17
Consensus pattern (43 bp):
CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
Found at i:56224170 original size:7 final size:6
Alignment explanation
Indices: 56224167--56224207 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
56224157 ATAAAAAATG
*
56224167 AAAAGA GAAAAGA AAAAGA AAAAGGA AAAGGA AAAAGA AAA
1 AAAAGA -AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA AAA
56224208 GGAGATGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
6 20 0.65
7 11 0.35
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:56224208 original size:12 final size:13
Alignment explanation
Indices: 56224160--56224210 Score: 54
Period size: 12 Copynumber: 4.1 Consensus size: 13
56224150 AGTCAAAATA
*
56224160 AAAAATGAAAA-G
1 AAAAAGGAAAAGG
*
56224172 AGAAAA-GAAAAAG
1 A-AAAAGGAAAAGG
56224185 AAAAAGGAAAAGG
1 AAAAAGGAAAAGG
56224198 AAAAA-GAAAAGG
1 AAAAAGGAAAAGG
56224210 A
1 A
56224211 GATGCCAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
12 18 0.51
13 17 0.49
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (13 bp):
AAAAAGGAAAAGG
Found at i:56224209 original size:18 final size:17
Alignment explanation
Indices: 56224160--56224210 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 17
56224150 AGTCAAAATA
56224160 AAAAATGAAAAGAGAAAAG
1 AAAAA-GAAAAG-GAAAAG
56224179 AAAAAGAAAAAGGAAAAGG
1 AAAAAG-AAAAGGAAAA-G
56224198 AAAAAGAAAAGGA
1 AAAAAGAAAAGGA
56224211 GATGCCAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAGGAAAAG
Found at i:56225964 original size:87 final size:87
Alignment explanation
Indices: 56225802--56226301 Score: 750
Period size: 87 Copynumber: 5.7 Consensus size: 87
56225792 TCAGTCAATG
** * * *
56225802 TCGAAAATGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
* * *
56225867 CTTGCATTAACAGTGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
56225889 TCGGAAACGAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
**
56225954 CCTATGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* * * * *
56225976 CCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAGGATAGCAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
*
56226041 CCTGCATTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* ** *
56226063 TCGAAGATGAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
56226128 CCTGCGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
56226150 CCTAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
56226215 CCTGCGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
56226237 TCGAAAACAAAGCCTTACCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGA-AGATATTGCCT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-ACAGATCTTGCCT
56226301 T
65 T
56226302 TCTAAGCACT
Statistics
Matches: 372, Mismatches: 40, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
87 371 1.00
88 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (87 bp):
TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
CCTGCGTTAACAGCGAAGCAGA
Found at i:56226532 original size:43 final size:42
Alignment explanation
Indices: 56226423--56226538 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
56226413 AAATAGCAAG
* *
56226423 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAATCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACAATCAA
* ** * ** *
56226465 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACAAT-AGA
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-CAAAACAATCA-A
56226509 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
56226539 TCGTATCGGG
Statistics
Matches: 56, Mismatches: 15, Indels: 5
0.74 0.20 0.07
Matches are distributed among these distances:
42 11 0.20
43 27 0.48
44 18 0.32
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACAATCAA
Found at i:56226600 original size:44 final size:45
Alignment explanation
Indices: 56226548--56226654 Score: 130
Period size: 44 Copynumber: 2.4 Consensus size: 45
56226538 ATCGTATCGG
*
56226548 GTCTTATCTCCCTGAAGTTC-CAGCGGAGCAGACTG-AGAAAGCGA
1 GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAG-AAGCAA
* * *
56226592 GTCTTATCTCCTTGAAG-TCACAGTGGGGCAGACTGAAGAAGCAA
1 GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAGAAGCAA
* *
56226636 ATCCTATCTCCCTGAAGTT
1 GTCTTATCTCCCTGAAGTT
56226655 GTAGTGGAGC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
43 2 0.04
44 48 0.91
45 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAGAAGCAA
Found at i:56231760 original size:42 final size:40
Alignment explanation
Indices: 56231701--56231849 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 40
56231691 TGGTCATGCA
* *
56231701 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGATGTGTG
1 GGAGCCTCGGACACCATCGGCACCTAGGTGCT-AGATGTG-G
* ** * *
56231743 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGG
1 GGAGCCTCGGACACCATCGGC-ACCTAGGTGCTAGAT-GTGG
* *
56231785 GAGAGCGTC-GAGCACCATCGGCACCTAGGTGCTTGGATGTGCG
1 G-GAGCCTCGGA-CACCATCGGCACCTAGGTGC-TAGATGTG-G
56231828 GGAGCCTCGGACACCATCGGCA
1 GGAGCCTCGGACACCATCGGCA
56231850 AACTAGGCCC
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
42 53 0.61
43 34 0.39
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (40 bp):
GGAGCCTCGGACACCATCGGCACCTAGGTGCTAGATGTGG
Found at i:56231806 original size:43 final size:43
Alignment explanation
Indices: 56231683--56232405 Score: 493
Period size: 43 Copynumber: 16.9 Consensus size: 43
56231673 TCCGGTAGCA
* *
56231683 TAGGCCCTTGGTCAT-GCAGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
* ** * * * *
56231725 TTGGTGCTAAGAT-GTGTGG-GAGCCTCAGACACCATCGGCAACC
1 TAGGCCCT-TGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* *
56231768 TAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
** * *
56231810 TAGGTGCTTGGAT-GTGCGG-GAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * * **
56231853 TAGGCCCTTGGTCGTACGGA-ACCCTCGGACACCATCGATAACC
1 TAGGCCCTTGGTCGT-GGGAGAGCCTCGGGCACCATCGGCAACC
* * *
56231896 TAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* * * * * * * *
56231938 TGGGCGCTCGGGT-GTACGG-GAGCCTCAGACACTATCGGCAAAC
1 TAGGCCCT-TGGTCGT-GGGAGAGCCTCGGGCACCATCGGCAACC
* *
56231981 TAGGCCCTTGGTCTTGTGAGAGCCTCGGGCACCATCGGTC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGG-CAACC
* * *
56232024 TAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* * * * ** *
56232066 TGGGCGCTCGAAT-GTGCGG-GAGCCTCGAACACCATCAGG-AAAC
1 TAGGCCCTTG-GTCGTG-GGAGAGCCTCGGGCACCATC-GGCAACC
56232109 TAGGCCCTTGGTCGTGCGG-GAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
56232151 TCGGTACTAT-GACGT-GCAGGAGCCTTGGACACTATCGGCAACC
1 TAGGCCCT-TGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
* * *** *
56232194 TAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCAAAAAAC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* ** * *
56232237 TAAGCCCTTGGTCGT-ACAGGAGCCCCGGGCACCATCGGCAACA
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
*
56232280 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGCACCATCGGCAACA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * * *
56232323 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGAACTATCGACAACA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * *
56232366 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGTACCATCGGCA
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCA
56232406 CCTGGGTGCT
Statistics
Matches: 526, Mismatches: 120, Indels: 69
0.74 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
42 157 0.30
43 365 0.69
44 3 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
Found at i:56231831 original size:85 final size:85
Alignment explanation
Indices: 56231683--56232408 Score: 550
Period size: 85 Copynumber: 8.5 Consensus size: 85
56231673 TCCGGTAGCA
* * * * ** * * *
56231683 TAGGCCCTTGGTCAT-GCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGAT-GTGTGGGA
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGAGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGA
*
56231746 GCCTCAGACACCATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* **
56231768 TAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTAGGTGCTTGGAT-GTGCGGGAG
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAG
*
56231832 CCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
* * ** * * *
56231853 TAGGCCCTTGGTCGTACGGA-ACCCTCG-GACACCATCGATAACCTAGGCCGTTAGTCGTGCGAG
1 TAGGCCCTTGGTCGT-GGGAGAGCCTCGAG-CACCATCG-GCACCTAGGCCCTTGGTCGTGCGGG
*
56231916 AGCCTCGGGCACCATCGGC-ACC
63 AGCCTCGGACACCATCGGCAACC
* * * * * * * * *
56231938 TGGGCGCTCGGGT-GTACGG-GAGCCTC-AGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGA
1 TAGGCCCT-TGGTCGT-GGGAGAGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGG
*
56232000 GAGCCTCGGGCACCATCGGTC-ACC
62 GAGCCTCGGACACCATCGG-CAACC
* * * * * *
56232024 TAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGCACCTGGGCGCTCGAAT-GTGCGGGAG
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTG-GTCGTGCGGGAG
* *
56232088 CCTCGAACACCATCAGG-AAAC
65 CCTCGGACACCATC-GGCAACC
* * ** * *
56232109 TAGGCCCTTGGTCGTGCGG-GAGCCTCGGGCACCATCGGCACCTCGGTACTAT-GACGTGCAGGA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGAGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGA
* *
56232172 GCCTTGGACACTATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* *** * * * *
56232194 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GACACCATCAAAAAACTAAGCCCTTGGTCGTACAGGA
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAG-CACCATC-GGCACCTAGGCCCTTGGTCGTGCGGGA
* * *
56232258 GCCCCGGGCACCATCGGCAACA
64 GCCTCGGACACCATCGGCAACC
* * *
56232280 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGTGGGA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGAGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGA
* * *
56232344 GCCTCGGGA-ACTATCGACAACA
64 GCCTC-GGACACCATCGGCAACC
* *
56232366 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGTACCATCGGCACCT
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCT
56232409 GGGTGCTCAG
Statistics
Matches: 511, Mismatches: 100, Indels: 60
0.76 0.15 0.09
Matches are distributed among these distances:
84 6 0.01
85 296 0.58
86 203 0.40
87 6 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:56231917 original size:128 final size:127
Alignment explanation
Indices: 56231754--56232380 Score: 601
Period size: 128 Copynumber: 4.9 Consensus size: 127
56231744 GAGCCTCAGA
* * *
56231754 CACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTT
*
56231819 GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGA
66 GG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
** * * * *
56231882 CACCATCGATAACCTAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCT-
* * * * * *
56231947 GGGTGTACGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTC-T-TGTGAGAGCCTCGGG
65 TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACG-GA-ACCCTCGGG
* * *
56232010 CACCATCGGTC-ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGCACCTGGGCGCT
1 CACCATCGG-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCT
* * * * * *
56232074 CGAATGTGCGGGAGCCTCGAACACCATCAGG-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
65 TG-GTGTGCGGGAGCCTCGGACACCATC-GGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
* ** * * *
56232138 CACCATCGGC-ACCTCGGTACTAT-GACGTGC-AGGAGCCTTG-GACACTATCGGCAACCTAGGC
1 CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGA-GAGCCTCGAG-CACCATCGGC-ACCTAGGC
* * *** * *
56232199 CCTTGGTCGTGCGAGAGCCTCGGACACCATCAAAAAACTAAGCCCTTGGTCGTACAGGAGCCC-C
62 GCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTAC-GGAACCCTC
56232263 GGG
125 GGG
* * * * * *
56232266 CACCATCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACATAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGC-ACCTAGGCGCT
* * *
56232331 TGGTCGTGTGGGAGCCTCGGGA-ACTATCGAC-AACATAGGCCCTTGGTCGT
65 TGGT-GTGCGGGAGCCTC-GGACACCATCGGCAAAC-TAGGCCCTTGGTCGT
56232381 GCGAGAGCCT
Statistics
Matches: 410, Mismatches: 68, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
126 3 0.01
127 34 0.08
128 283 0.69
129 85 0.21
130 5 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (127 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTT
GGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
Found at i:56232100 original size:213 final size:212
Alignment explanation
Indices: 56231683--56232229 Score: 611
Period size: 213 Copynumber: 2.6 Consensus size: 212
56231673 TCCGGTAGCA
* * * *
56231683 TAGGCCCTTGGTCATGC-AGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGATGTGTGGGAG
1 TAGGCCCTTAGTCGTGCGA-GAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAG
* * * *
56231747 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTA
65 CCTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA
** ** * *
56231812 GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCC
130 GGCCCTTGGATGTGCGAAAGCCTCGGACACCATCGGCAAACTAGGCCCTCGATCGTACGGAACCC
*
56231877 TCGGACACCATC-GATAACC
195 TCGAACACCATCAGA-AA-C
* * * ** * *
56231896 TAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGGTGTACGGGAGC
1 TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
* * *
56231961 CTCAGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGAGAGCCTCGGGCACCATCGGTCACCTA
66 CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTA
* * * * * *
56232026 GGCCCTTGG-TCGTGTGAAAGCCTC-GAGCACCATCGGC-ACCTGGGCGCTCGAAT-GTGCGGGA
130 GGCCCTTGGAT-GTGCGAAAGCCTCGGA-CACCATCGGCAAACTAGGCCCTCG-ATCGTACGGAA
*
56232087 GCCTCGAACACCATCAGGAAAC
192 CCCTCGAACACCATCA-GAAAC
* * * * * *
56232109 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTACTATGACGTGCAGGAGC
1 TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
** *
56232174 CTTGGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATC
66 CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
56232230 AAAAAACTAA
Statistics
Matches: 279, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
213 240 0.86
214 37 0.13
215 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (212 bp):
TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG
GCCCTTGGATGTGCGAAAGCCTCGGACACCATCGGCAAACTAGGCCCTCGATCGTACGGAACCCT
CGAACACCATCAGAAAC
Found at i:56232219 original size:256 final size:252
Alignment explanation
Indices: 56231739--56232408 Score: 699
Period size: 256 Copynumber: 2.6 Consensus size: 252
56231729 TGCTAAGATG
* * * * *
56231739 TGTGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATC
1 TGTGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC
* *
56231804 GGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTA
66 GGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGACACCATCGG-AAACTAGGCCCTTGGTCGTG
* * * ** * * *
56231869 CGGAACCCTCGGACACCATCGATAACCTAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGG
129 CGGGAGCCTCGGGCACCATCG-GCACCTAGGACGTTAGACGTGCGAGAGCCTCGGACACCATCGG
* * * * *** *
56231934 CACCTGGGCGCTCGGGTGTACGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTC
193 CACCTAGGCCCTCGGGTGTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGTC
*
56231994 TTGTGAGAGCCTCGGGCACCATCGGTC-ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCA
1 -TGTGAGAGCCTCGGGCACCATCGG-CAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCA
* * *
56232058 TCGGCACCTGGGCGCTCGAATGTGCGGGAGCCTCGAACACCATCAGGAAACTAGGCCCTTGGTCG
64 TCGGCACCTAGGCGCTTG-ATGTGCGGGAGCCTCGGACACCATC-GGAAACTAGGCCCTTGGTCG
* * *
56232123 TGCGGGAGCCTCGGGCACCATCGGCACCTCGGTAC--TATGACGTGC-AGGAGCCTTGGACACTA
127 TGCGGGAGCCTCGGGCACCATCGGCACCTAGG-ACGTTA-GACGTGCGA-GAGCCTCGGACACCA
* * *
56232185 TCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGACACCATCAAAAAACTAAGCCCTTGGT
189 TCGGC-ACCTAGGCCCTCGGGT-GTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGT
56232249 C
252 C
* * * * *
56232250 -GTACAGGAGCCCCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCA
1 TGT-GA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCA
* * * * *
56232314 TCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGA-ACTATC-GACAACATAGGCCCTTGG
64 TCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTC-GGACACCATCGGA-AAC-TAGGCCCTTGG
* * *
56232377 TCGTGCGAGAGCCTCGAGTACCATCGGCACCT
124 TCGTGCGGGAGCCTCGGGCACCATCGGCACCT
56232409 GGGTGCTCAG
Statistics
Matches: 348, Mismatches: 50, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
254 5 0.01
255 37 0.11
256 235 0.68
257 69 0.20
258 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (252 bp):
TGTGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC
GGCACCTAGGCGCTTGATGTGCGGGAGCCTCGGACACCATCGGAAACTAGGCCCTTGGTCGTGCG
GGAGCCTCGGGCACCATCGGCACCTAGGACGTTAGACGTGCGAGAGCCTCGGACACCATCGGCAC
CTAGGCCCTCGGGTGTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGTC
Found at i:56248764 original size:75 final size:75
Alignment explanation
Indices: 56248640--56248800 Score: 261
Period size: 75 Copynumber: 2.1 Consensus size: 75
56248630 TGATGCAACG
* *
56248640 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCTTTACATGTGACGTACCCAACAATGAAC
1 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAAT-AAA
*
56248705 T-AATCGTTCC
65 TGAATCGTCCC
* *
56248715 GGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAATAATAAAT
1 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAATAAAT
56248780 GAATCGTCCC
66 GAATCGTCCC
56248790 AGTCCCTCCCC
1 AGTCCCTCCCC
56248801 TTGGTCGTGC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
74 3 0.04
75 76 0.96
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (75 bp):
AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAATAAAT
GAATCGTCCC
Found at i:56248860 original size:43 final size:42
Alignment explanation
Indices: 56248798--56248959 Score: 180
Period size: 43 Copynumber: 3.8 Consensus size: 42
56248788 CCAGTCCCTC
*
56248798 CCCTTGGTCGTGCGTGAGCCTTCGGCACCATCGACAACCTAGG
1 CCCTTGGTCGTGCGAGAGCC-TCGGCACCATCGACAACCTAGG
* * **
56248841 TCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
1 CCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGACAACCTAGG
* * ** *
56248884 CCCTTGGTCATGCGAGAGCCTCGGACACCATCGTCAAAATAGA
1 CCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGACAACCTAGG
* *
56248927 CCCTTGGTCGTGCGAGAGCATTGAGCACCATCG
1 CCCTTGGTCGTGCGAGAGCCTCG-GCACCATCG
56248960 GCACCTTGGT
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 4 0.04
43 96 0.95
44 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (42 bp):
CCCTTGGTCGTGCGAGAGCCTCGGCACCATCGACAACCTAGG
Found at i:56248955 original size:86 final size:86
Alignment explanation
Indices: 56248798--56248960 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 86
56248788 CCAGTCCCTC
* * ** ** * *
56248798 CCCTTGGTCGTGCGTGAGCCTTCGGCACCATCGACAACCTAGGTCCTTGGTCGTGCGGGAGCCTC
1 CCCTTGGTCATGCGAGAGCCTTCGGCACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCATC
*
56248863 GGGCACCATCGGTAACCTAGG
66 GAGCACCATCGGTAACCTAGG
*
56248884 CCCTTGGTCATGCGAGAGCC-TCGGACACCATCGTCAAAATAGACCCTTGGTCGTGCGAGAGCAT
1 CCCTTGGTCATGCGAGAGCCTTCGG-CACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCAT
*
56248948 TGAGCACCATCGG
65 CGAGCACCATCGG
56248961 CACCTTGGTG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
85 4 0.06
86 61 0.94
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (86 bp):
CCCTTGGTCATGCGAGAGCCTTCGGCACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCATC
GAGCACCATCGGTAACCTAGG
Found at i:56249139 original size:14 final size:13
Alignment explanation
Indices: 56249105--56249142 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
56249095 ACATACGAGT
56249105 GTCGCCTGGTA-G
1 GTCGCCTGGTAGG
*
56249117 GTTGCCTGGTAGTG
1 GTCGCCTGGTAG-G
56249131 GTCGCCTGGTAG
1 GTCGCCTGGTAG
56249143 CGTAGCGCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
14 12 0.55
ACGTcount: A:0.08, C:0.21, G:0.42, T:0.29
Consensus pattern (13 bp):
GTCGCCTGGTAGG
Found at i:56255745 original size:107 final size:107
Alignment explanation
Indices: 56255545--56255747 Score: 232
Period size: 107 Copynumber: 1.9 Consensus size: 107
56255535 GCTAGGATGT
* * *
56255545 GCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGAACTTGCGAGACCCTCGGGCACCATTA
1 GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCATGA
* * ***
56255610 GCACCTAGGTGCTTAGATGTGTTTGAGCCTCAAACACCATCG
66 GAACCTAGGTGCTCAGATGTGCAGGAGCCTCAAACACCATCG
** ** *
56255652 GCGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
1 GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCAT-G
*
56255717 A-AACC-ATGGCT-CTCGGATGTGCAGGAGCCTC
65 AGAACCTA-GG-TGCTCAGATGTGCAGGAGCCTC
56255748 GGACAACATC
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
106 1 0.01
107 76 0.96
108 2 0.03
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.18
Consensus pattern (107 bp):
GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCATGA
GAACCTAGGTGCTCAGATGTGCAGGAGCCTCAAACACCATCG
Found at i:56255887 original size:128 final size:128
Alignment explanation
Indices: 56255659--56255929 Score: 382
Period size: 128 Copynumber: 2.1 Consensus size: 128
56255649 TCGGCGGGAC
*
56255659 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAAACCAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
* * *
56255724 GGCTCTCGGATGTGCAGGAGCCTCGGACAACATCGACAAACTAGTCCCTTGATCTTGCGGAAG
66 GGCTCTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
* * * **
56255787 CCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGCACC-T
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
* ** * * *
56255851 GGGTGCTCGGATGTGTGGGAGCCTCGAACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAG
66 GGCT-CTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
*
56255915 CCTCGGACACCATCG
1 CCTCGGGCACCATCG
56255930 ACACCTCAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
127 4 0.03
128 122 0.97
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (128 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
GGCTCTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
Found at i:56256056 original size:86 final size:85
Alignment explanation
Indices: 56255805--56256098 Score: 372
Period size: 85 Copynumber: 3.4 Consensus size: 85
56255795 ACCATCGGCT
* ** * ** **
56255805 ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGCACCTGGGTGCTCGGATGTGTGGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
*** **
56255870 AGCCTCGAACACCATCGACA
66 AGCCTCGAACATTGTCGGTA
* * * * *
56255890 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACACCTCAATGCTATGATGTGCGGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
*
56255955 AGCCTCGGACATTGTCGGTA
66 AGCCTCGAACATTGTCGGTA
* * *
56255975 ACCTAGACCCTTGGTCGTGCGGGAGCCTCAGACACCATTGGCAAACTCAGTGCTATGATGTGTGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGC-ACCTCAGTGCTATGATGTGTGG
56256040 GAGCCTCGAACATTGTCGGTA
65 GAGCCTCGAACATTGTCGGTA
*
56256061 ACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGACACCAT
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
56256099 CAGTAAGCTA
Statistics
Matches: 177, Mismatches: 31, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
85 103 0.58
86 74 0.42
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (85 bp):
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
AGCCTCGAACATTGTCGGTA
Found at i:56256198 original size:85 final size:82
Alignment explanation
Indices: 56256077--56256678 Score: 503
Period size: 85 Copynumber: 7.1 Consensus size: 82
56256067 GCCCTTGGTC
* * * * * *
56256077 GTGCGGTAGCCTCGGACACCATCAGTAAGCTAGGCCCTTGGTCGTGCGGGAGCCTAGGGCACTAT
1 GTGCGGGAGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
56256142 CGGTACCTCAGTGCTATGAT
65 CGGCACCT-AGTGCT-TGAT
* * * * *
56256162 GTGC-AGATGCCTCAGACACTATCGGTAACTTAGGCCCTTCGTCGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGA-GCCTCAGACACCATCGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
56256226 TCGACAACTTGGTGCTTGAAT
64 TCGGC-ACCTAGTGCTTG-AT
* * * *
56256247 GTGCGGGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTCGTGTGTGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCAGACACCATCGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
56256312 CGGCAACTAG-GCCCTTGGT
65 CGGCACCTAGTG--CTTGAT
* ** **
56256331 CGTGCTGGAGCCTTGGGA-ACCATCGGCAACTACACCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 -GTGCGGGAGCC-TCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
56256395 TCGGCACCTAGGTGCTCGAAT
64 TCGGCACCTA-GTGCTTG-AT
* * *
56256416 GTGCGAGAGCCTCAGGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGGACCATC
1 GTGCGGGAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** *
56256481 GGCAACTAGACCCTTGGT
66 GGCACCTAG-TGCTTGAT
* * * * * *
56256499 CGTGCGGGAGCCTCGGGCACCATCAGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTAGGGCACTA
1 -GTGCGGGAGCCTCAGACACCATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
56256564 -CTGGTACCTCAGTGCTACGAT
64 TC-GGCACCT-AGTGCT-TGAT
* * * * * * **
56256585 GTGCGGAAGCCTCAGACACTACCAGCAGCCTAGG-CCTTGCTCGTGCCAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCAGACACCATCGGCA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
56256649 CGACACCTCAGTGCTATGAT
65 CGGCACCT-AGTGCT-TGAT
56256669 GTGCGGGAGC
1 GTGCGGGAGC
56256679 ATCGGACATT
Statistics
Matches: 415, Mismatches: 81, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
83 5 0.01
84 187 0.45
85 210 0.51
86 13 0.03
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (82 bp):
GTGCGGGAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCACCTAGTGCTTGAT
Found at i:56256342 original size:42 final size:42
Alignment explanation
Indices: 56255652--56256561 Score: 644
Period size: 42 Copynumber: 21.4 Consensus size: 42
56255642 AACACCATCG
*
56255652 GCGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * * *
56255695 GCGAGAGCCTCGGGCACCATC-GAAACCATGGCTCTCGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTA-GGCCCTTGG-TCGT
* * * * * * *
56255737 GCAGGAGCCTCGGACAACATCGACAAACTAGTCCCTTGATCTT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* *
56255780 GCGGAAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* ** * * * ** *
56255823 GTGAAAGCCTCGGGCACCATTGGCACCTGGGTGCTCGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGG-TCGT
* ** *
56255865 GTGGGAGCCTCGAACACCATCGACAAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* * * * *
56255908 GCGGGAGCCTCGGACACCATCGACACCTCAATG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACT--AGGCCCT-TGGTCGT
* *** * *
56255950 GCGGGAGCCTCGGACATTGTCGGTAACCTAGACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * *
56255993 GCGGGAGCCTCAGACACCATTGGCAAACTCAGTG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGC-AACT-AG-GCCCT-TGGTCGT
* ** *** *
56256036 GTGGGAGCCTCGAACATTGTCGGTAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * *
56256079 GCGGTAGCCTCGGACACCATCAGTAAGCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * * *
56256122 GCGGGAGCCTAGGGCACTATCGGTACCTCAGTG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACT-AG-GCCCT-TGGTCGT
* * * * * *
56256164 GC-AGATGCCTCAGACACTATCGGTAACTTAGGCCCTTCGTCGT
1 GCGGGA-GCCTCGGGCACCATCGGCAAC-TAGGCCCTTGGTCGT
* * * ** *
56256207 GCGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGAAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTG-GTCGT
* * *
56256249 GCGGGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAAC-TAGGCCCTTGGTCGT
* *
56256292 GTGTGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* * * **
56256334 GCTGGAGCCTTGGGAACCATCGGCAACTACACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* ** * *
56256376 GCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTG-GTCGT
* *
56256418 GCGAGAGCCTCAGGCACCATCGGCAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* *
56256460 GCGGGAGCCTCGGGGACCATCGGCAACTAGACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
*
56256502 GCGGGAGCCTCGGGCACCATCAGCAAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* *
56256545 GTGGGAGCCTAGGGCAC
1 GCGGGAGCCTCGGGCAC
56256562 TACTGGTACC
Statistics
Matches: 671, Mismatches: 158, Indels: 76
0.74 0.17 0.08
Matches are distributed among these distances:
41 8 0.01
42 331 0.49
43 316 0.47
44 16 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (42 bp):
GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
Found at i:56256678 original size:169 final size:168
Alignment explanation
Indices: 56256196--56256653 Score: 458
Period size: 169 Copynumber: 2.7 Consensus size: 168
56256186 GTAACTTAGG
* * * * * * * * * *
56256196 CCCTTCGTCGTGCGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGAATGTGCGGGAACCTCT
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
* * * *** * *
56256261 GACACCATCGGCAACATAGGCCCTTGGTCGTGTGTGAGCCTCGGGCACCATCGGCAACTAGGCCC
66 GACACCACCAGCAAC-TAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCC
* * * *
56256326 TTGGTCGTGCTGGAGCCTTGGGAACCATCGGCAACTACA
130 TTGATCGTGCGGGAGCCTCGGGAACCATCAGCAACTACA
*
56256365 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
* * * * ** * *
56256430 GGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGGACCATCGGCAACTAGACCCT
66 GACACCACCAGCAACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCCT
* * **
56256495 TGGTCGTGCGGGAGCCTCGGGCACCATCAGCAAACTAGG
131 TGATCGTGCGGGAGCCTCGGGAACCATCAGC-AACTACA
* * *
56256534 CCCTTGGTCGTGTGGGAGCCTAGGGCACTA-CTGGTACCTCA-GTGCTACG-ATGTGCG-GAAGC
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATC-GGCACCT-AGGTGCT-CGAATGTGCGAG-AGC
* *
56256595 CTCAGACACTACCAGCAGCCTAGG-CCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACA
62 CTCAGACACCACCAGCA-ACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACA
56256654 CCTCAGTGCT
Statistics
Matches: 249, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
168 75 0.30
169 166 0.67
170 8 0.03
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.19
Consensus pattern (168 bp):
CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
GACACCACCAGCAACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCCT
TGATCGTGCGGGAGCCTCGGGAACCATCAGCAACTACA
Found at i:56258929 original size:42 final size:42
Alignment explanation
Indices: 56258655--56259410 Score: 456
Period size: 43 Copynumber: 17.8 Consensus size: 42
56258645 GGGTGTTACA
* * * **
56258655 CCCTTGGTCTTGTGGGAGCCTCGGACACCATTAGCAAGCTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-CTAGG
* * * * *
56258698 CCCTTGGTCGTGCGGGAGCCTAGGGTACTATCGGCACCTCGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * * * *
56258740 TGCTATGAT-GTGC-AGATGCCTCAGACACTATC-GCTAACCTAGG
1 CCCT-TGGTCGTGCGGGA-GCCTCGGGCACCATCGGC-AA-CTAGG
* * * * * *
56258783 CCTTTCGTCGTGCGGGGAGCCTCGAGCACCATCGACACCTTGG
1 CCCTTGGTCGTGC-GGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *
56258826 TGCTTGGAT-GTGCGGGAACCTCTGACACCATCGGCAACATAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC-TAGG
*
56258869 CCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* * * *
56258911 CCCTTAGTCGTGCTGGAGCCTCGGGGACCATCGGCAACTAGA
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* *
56258953 CCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * * *
56258995 TGCTCGAAT-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGG
1 CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* * ** * *
56259038 CCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCATCTGGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* * ** *
56259080 CGCTCGGAT-GTATGGGAGCCTCGGACACCATCGGCAAACTAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* *
56259123 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACCTCAGTG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACT-AG-G
* * * * * * * * * *
56259167 --CTATGAT-GTACAGGATCGTCGAGCAGCACCGGCACCTTGG
1 CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *
56259207 -TGTTGGAT-GTGCGGGAACCTCGGACAGCATCGGCAACCTAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA-CTAGG
* ** *
56259249 CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCTCCTGGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *** * *
56259291 TGCTCAGAT-GTGCGGGAGCCTCAAACGCCATCGGCAAACTAAG
1 CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* *
56259334 CCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAAAATAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* ** *
56259377 CCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
56259411 TACCTTGGTG
Statistics
Matches: 530, Mismatches: 155, Indels: 56
0.72 0.21 0.08
Matches are distributed among these distances:
40 3 0.01
41 27 0.05
42 241 0.45
43 242 0.46
44 14 0.03
45 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
Found at i:56258941 original size:85 final size:84
Alignment explanation
Indices: 56258669--56259410 Score: 337
Period size: 85 Copynumber: 8.8 Consensus size: 84
56258659 TGGTCTTGTG
* ** * * * *
56258669 GGAGCCTCGGACACCATTAGCAAGC-TAGGCCCTTGGTCGTGCGGGAGCCTAGGGTACTATCGGC
1 GGAGCCTCGGGCACCATCGGCAA-CATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC
* * **
56258733 ACCTCGGTGC-TATGATGTGC-
65 AACTAGGCCCTTA-G-TGTGCT
* * * * * * * * *
56258753 AGATGCCTCAGACACTATC-GCTAACCTAGGCCTTTCGTCGTGCGGGGAGCCTCGAGCACCATCG
1 GGA-GCCTCGGGCACCATCGGC-AACATAGGCCCTTGGTTGTGC-GGGAGCCTCGGGCACCATCG
* * * ** * *
56258817 ACACCTTGGTGCTTGGATGTGCG
63 GCAACTAGGCCCTTAG-TGTGCT
* * *
56258840 GGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
56258905 ACTAGGCCCTTAGTCGTGCT
66 ACTAGGCCCTTAGT-GTGCT
* * * *
56258925 GGAGCCTCGGGGACCATCGGCAAC-TAGACCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
* ** * *
56258989 CCTAGGTGCTCGAATGTGC-
66 ACTAGGCCCT-TAGTGTGCT
* * **
56259008 GAGAGCCTCGGACACCATCGGCAA-ACTAGGCCCTTGGTCT-TGGGGGAGCCTCGGGCACCATTA
1 G-GAGCCTCGGGCACCATCGGCAACA-TAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCG
* * * ** *
56259071 GCATCTGGGCGCTCGGATGT-AT
63 GCAACTAGGCCCTTAG-TGTGCT
* * *
56259093 GGGAGCCTCGGACACCATCGGCAA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGG
1 -GGAGCCTCGGGCACCATCGGCAACA-TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG
* ** * * *
56259157 CACCTCAGTGCTATGA-TGTACA
64 CAACT-AG-GCCCTTAGTGTGCT
* * * * * * * ** * * * *
56259179 GGATCGTCGAGCAGCACCGGC-ACCTTGG-TGTTGGATGTGCGGGAACCTCGGACAGCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
*
56259242 ACCTAGGCCCTTGGTCGTGC-
66 A-CTAGGCCCTTAGT-GTGCT
* * * ** ** * *** *
56259262 GAGAGCCTCGGGCACCATCGGC-TCCTGGGTGCTCAGATGTGCGGGAGCCTCAAACGCCATCGGC
1 G-GAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC
* *
56259326 AAACTAAGCCCTTGGTCGTG-T
65 -AACTAGGCCCTTAGT-GTGCT
* * * ** *
56259347 GGGAGCCTCGGGCACCATCGGCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG
1 -GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG
56259411 TACCTTGGTG
Statistics
Matches: 506, Mismatches: 122, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
82 3 0.01
83 32 0.06
84 103 0.20
85 268 0.53
86 92 0.18
87 8 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (84 bp):
GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
ACTAGGCCCTTAGTGTGCT
Found at i:56259027 original size:169 final size:170
Alignment explanation
Indices: 56258789--56259161 Score: 468
Period size: 169 Copynumber: 2.2 Consensus size: 170
56258779 TAGGCCTTTC
* * * * * * *
56258789 GTCGTGCGGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCTGACAC
1 GTCGTGC-GGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACAC
* *
56258854 CATCGGC-AACATAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTA
65 CATCGGCAAAC-TAGGCCCTTGGTCT-TGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCA
* **
56258917 G-TCGTGCT-GGAGCCTCGGGGACCATCGGC-AACTAGACCCTTG
128 GAT-GT-ATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
* *
56258959 GTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCGGACACC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACACC
* * * * * *
56259024 ATCGGCAAACTAGGCCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCATCTGGGCGCTCGGAT
66 ATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCAGAT
*
56259089 GTATGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTG
131 GTATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
*
56259129 GTCGTGCGGGAGCCTCGGGCACCATTGGCACCT
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
56259162 CAGTGCTATG
Statistics
Matches: 175, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
168 1 0.01
169 119 0.68
170 55 0.31
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (170 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACACC
ATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCAGAT
GTATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
Found at i:56259111 original size:211 final size:211
Alignment explanation
Indices: 56258881--56259455 Score: 640
Period size: 211 Copynumber: 2.7 Consensus size: 211
56258871 CTTGGTTGTG
* * *
56258881 CGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTAGTCGTGCTGGAGCCTCGGGGACCATCGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
* *
56258945 CAACTAGACCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGA
66 CAACTAG-CCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCGG
* * * * *
56259010 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCAT
130 GAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC-T
*
56259075 -CTGGGCGCTCGGATGTA
194 CCTGGGCGCTCAGATGTA
* * *
56259092 TGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
* ** * * * * * * * * *
56259157 CACCTCAGTGCTATGAT-GTACAGGATCGTCGAGCAGCACCGGCACCTTGGTG-TTGGATGTGCG
66 CAACT-AGCCCT-TGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCG
* * * *
56259220 GGAACCTCGGACAGCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCT
129 GGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCT
* *
56259285 CCTGGGTGCTCAGATGTG
194 CCTGGGCGCTCAGATGTA
** * *
56259303 CGGGAGCCTCAAACGCCATCGGCAAACTAAGCCCTTGGTCGTG-TGGGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCT-GGAGCCTCGGGCACCATCG
* * * * * * *
56259367 GCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGGTACCTTGGTGGCTCGAATTTA
65 GC-AACTA-GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGT-GCTCGAATGTG
56259432 CGGGAGCCTC-GAGCAACATCGGCA
127 CGGGAGCCTCGGA-CAACATCGGCA
56259456 CCTTGGTGGC
Statistics
Matches: 294, Mismatches: 59, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
210 1 0.00
211 161 0.55
212 100 0.34
213 8 0.03
214 24 0.08
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (211 bp):
CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
CAACTAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCGGG
AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCTCC
TGGGCGCTCAGATGTA
Found at i:56259326 original size:126 final size:125
Alignment explanation
Indices: 56259093--56259499 Score: 383
Period size: 126 Copynumber: 3.2 Consensus size: 125
56259083 TCGGATGTAT
* *
56259093 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGC
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * *
56259158 ACCTCAGTGCT-ATGATGTACAGGATCGTCGAGCAGCACCGGCACCTTGGTGTTGGATGTGC
66 TCCTCGGTGCTCA-GATGTACGGGAGCCTCGAGC-GCATCGGCACCTTGGTGTTGGATGTGC
* * *
56259219 GGGAACCTCGGACAGCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * * *** *
56259284 TCCTGGGTGCTCAGATGTGCGGGAGCCTCAAACGCCATCGGCAAACTAAGCCCTTGG-TCGTGT
66 TCCTCGGTGCTCAGATGTACGGGAGCCTCGAGCG-CATCGGC-ACCT-TGGTGTTGGAT-GTGC
* * * * *
56259347 GGGAGCCTCGGGCACCATCGGCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG-
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * *
56259411 TACCTTGGTGGCTC-GAATTTACGGGAGCCTCGAGCAACATCGGCACCTTGGTGGCTCT-GATGT
66 T-CCTCGGT-GCTCAG-ATGTACGGGAGCCTCGAGC-GCATCGGCACCTTGGT-G-T-TGGATGT
*
56259474 AC
124 GC
*
56259476 GGGAGCCTTGGACACCATCGGCAA
1 GGGAGCCTCGGACACCATCGGCAA
56259500 CCTTGGTGCT
Statistics
Matches: 224, Mismatches: 44, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
125 1 0.00
126 88 0.39
127 7 0.03
128 74 0.33
129 52 0.23
130 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (125 bp):
GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
TCCTCGGTGCTCAGATGTACGGGAGCCTCGAGCGCATCGGCACCTTGGTGTTGGATGTGC
Found at i:56259439 original size:43 final size:42
Alignment explanation
Indices: 56259392--56259528 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
56259382 GGTCGTGCAA
* *
56259392 GAGCCTCAGGCACCATCGGTACCTTGGTGGCTC-GAATTTACGG
1 GAGCCTC-GGCACCATCGGAACCTTGGTGGCTCTG-ATGTACGG
* *
56259435 GAGCCTCGAGCAACATCGGCACCTTGGTGGCTCTGATGTACGG
1 GAGCCTCG-GCACCATCGGAACCTTGGTGGCTCTGATGTACGG
* **
56259478 GAGCCTTGGACACCATCGGCAACCTTGGT-GCT-TAGATGGGCGG
1 GAGCCTCGG-CACCATCGG-AACCTTGGTGGCTCT-GATGTACGG
56259521 GAGCCTCG
1 GAGCCTCG
56259529 AGGACCCCCG
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.04
43 68 0.85
44 9 0.11
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
GAGCCTCGGCACCATCGGAACCTTGGTGGCTCTGATGTACGG
Found at i:56260618 original size:179 final size:179
Alignment explanation
Indices: 56260308--56260664 Score: 561
Period size: 179 Copynumber: 2.0 Consensus size: 179
56260298 TTCTAGAGCT
*
56260308 AATACGTACAACAAACCCCGACTTCTGGAAGGGATGCATATATTAGATAAAAGGTCGACGCGGGC
1 AATACGTACAACAAACCCCGACTTCTGGAAGGGATGCATATATTAGATAAAAGGTCAACGCGGGC
* *
56260373 TTTGCCCGTTGCTCTGATGATTCATGATAACTCGACGGATCGCACGGCCTTTGTGCCGGCGACGC
66 TTTGCCCGTTGCTCTGATGATTCATGATAACTCGACCGATCGCACAGCCTTTGTGCCGGCGACGC
*
56260438 ATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGACAGTGGCCA
131 ATCATTCAAATTTCTGCCCTATCAACTTTCAATGGTAGGACAGTGGCCA
* ** * *
56260487 AATACGTGCAACAAACCTTGACTTTTGGAAGGGATGCATTTATTAGATAAAAGGTCAACGCGGGC
1 AATACGTACAACAAACCCCGACTTCTGGAAGGGATGCATATATTAGATAAAAGGTCAACGCGGGC
* * * *
56260552 TTTGGCTGTTGCTCTGATGATTCATGATAACTCGACCGATCGCACAGCCTTTGTGTCGGTGACGC
66 TTTGCCCGTTGCTCTGATGATTCATGATAACTCGACCGATCGCACAGCCTTTGTGCCGGCGACGC
** * *
56260617 ATCATTTGAATTTCTGCCTTATCAACTTTCAATGGTAGGATAGTGGCC
131 ATCATTCAAATTTCTGCCCTATCAACTTTCAATGGTAGGACAGTGGCC
56260665 TACAATGGTA
Statistics
Matches: 161, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
179 161 1.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (179 bp):
AATACGTACAACAAACCCCGACTTCTGGAAGGGATGCATATATTAGATAAAAGGTCAACGCGGGC
TTTGCCCGTTGCTCTGATGATTCATGATAACTCGACCGATCGCACAGCCTTTGTGCCGGCGACGC
ATCATTCAAATTTCTGCCCTATCAACTTTCAATGGTAGGACAGTGGCCA
Found at i:56266933 original size:31 final size:31
Alignment explanation
Indices: 56266895--56266956 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
56266885 ATCCCAAAGG
56266895 TAGAATTCAGATATCGTTACATGTGACGTAC
1 TAGAATTCAGATATCGTTACATGTGACGTAC
56266926 TAGAATTCAGATATCGTTACATGTGACGTAC
1 TAGAATTCAGATATCGTTACATGTGACGTAC
56266957 CCAATGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (31 bp):
TAGAATTCAGATATCGTTACATGTGACGTAC
Found at i:56267438 original size:85 final size:85
Alignment explanation
Indices: 56267336--56267494 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
56267326 TCCACCTTGG
* * *
56267336 TGCTAAGATGTGTGGGAGCCTC-AGACACCATCGG-TAACTTAGGCCCCTACTCGTGC-GAGAGC
1 TGCTAAGATGTGCGGGAGCCTCGA-ACACCATCGGCAAAC-TAGGCCCCTACTCGTGCAG-GACC
56267398 CTCGGGCACCATTGGCGCCTAAA
63 CTCGGGCACCATTGGCGCCTAAA
* * * **
56267421 TGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTC
1 TGCTAAGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCCTACTCGTGCAGGACCCTC
56267486 GGGCACCAT
66 GGGCACCAT
56267495 CGACAACTTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
85 58 0.92
86 5 0.08
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (85 bp):
TGCTAAGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCCTACTCGTGCAGGACCCTC
GGGCACCATTGGCGCCTAAA
Found at i:56267493 original size:43 final size:43
Alignment explanation
Indices: 56267430--56269917 Score: 865
Period size: 43 Copynumber: 58.5 Consensus size: 43
56267420 ATGCTTAGAT
** *
56267430 GTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * *
56267473 GTGCAGGACCCTCGGGCACCATCGAC-AACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * * * * *
56267516 GTGCGAGAGCCTCGGGCACCAACGGC-ACCTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * *
56267558 GTGCGGGAGCCTCAGACAGCATCAGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * ** *
56267601 ATGCGGGAGCCTCAGACACCATTGGC-ACCTCGGTACTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * *
56267643 GTGCGGGAGCCTCAGGCACCACCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ***
56267686 ATATGAGG-GCCTTGGGCACCATCGGC-TACTAGATGCTTGGAT-
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* ** * *
56267728 GTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * **
56267771 GTGCGGGACCCTCGAGCACCTTCGACAACCTAGGCCCTTTTTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * *
56267814 GTGCGAGATCCTCGGGCACTAACGGC--ACTTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGG-TC
*** * *
56267856 GTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * *
56267899 TTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ** * *
56267942 GTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGAGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * **
56267984 GTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * *
56268027 TTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ** * *
56268070 GTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGAGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** *
56268112 GTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * * ** *
56268155 ATGCGGGAGCCT-GAAACACCATTGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCG-GGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * * *
56268197 GTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * **
56268240 GCGTGGGAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ** *
56268283 GTGTGGGAGCCTCGAACACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* ** * ** *
56268325 GTGCAGGAGCCTCGTACACTATTAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * * **
56268368 GTGCGGGAGCGTCAAGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * *
56268410 GTGCGGGAACCTCAGACACCATCGGC-AACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * * ** *
56268453 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * *
56268495 GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGGGCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * *
56268538 ATACGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * *
56268581 GTGCGAGACCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** *
56268624 GTGCGAGAGCCTCGGGCACCGTCGGC-ACCTGGGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * ** * *
56268666 GTCCGGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* *
56268709 TTGCGGGAGCCTCGGGCACCATCGGC-TACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* ** * * * * *
56268752 GTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGCGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* *
56268794 GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * *** *
56268837 GTACGGGAGCCTCGGGTACCATTGG-AACCTCGGTGTTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * * * ** *
56268879 GTGCGAGAACATCAGACACTGTCTG-AAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAA-CTAGGCCCTTGGTC
* * * * *
56268922 GTGTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * ** **
56268965 GTGCGAGAGCCTCGGACACCATCGAC-ACCTCGGTGCTATAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * *
56269007 GTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * **
56269050 GTGCGGGAGCGTCGAGCACCATC-G-ACACTTATGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGG-TC
* * * * **
56269092 GTGCAGGAACCCCGGACACCATCAAC-AACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * *** * *** *
56269135 GTGCGAGAGCCTCAGGCACCATCGG-TGCCTTGATGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * **
56269177 GTACGAGAGCCTTGGAG-ACTGTTGGCAACCTAGGCCCTACGTC
1 GTGCGGGAGCCTCGG-GCACCATCGGCAAACTAGGCCCTTGGTC
* * * **
56269220 GTACGGGAGCCTCGGACACCATCAGCAAACTAGGCTTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** *
56269263 GT-CTGGGAGCTTCAGGCACCATCGGC-ACCTGGGCGGTCGGAT-
1 GTGC-GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * ** * * **
56269305 GTCCGGGAGCCCCGAACATCAGCGGCAAACTAAACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * *
56269348 ATGAAGGAGCCTC-AGCACCATCGG-TAACTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * *
56269389 ATGCAGGAGCCTTGGGCACCGTCGGCAAAATA-GCCCTTTGTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * **
56269431 GTGCGAGTA-CCTCGGGTATCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
***
56269473 GTGCGGGAGCCTCAAACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** * *
56269516 ATGAGGGAGCCTCGGGCACTATCGGCAACCTAGGTTCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * *
56269559 GTGCTGGAGCCTCGGACACCATCGGTAAACTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * *
56269602 TTG-GAGGAGCCTCTGGCACTATCGGC-TACTAGGCCCTTGGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
***** * * * * * * * *
56269644 GTATAAAAGCATCAGGTACCATCGAC-ACCTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * * ** *
56269686 GTCCGGGAGCCTCGGGTACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * * * * **
56269728 GTGCGGGAGCCTTGAGCACCACCGAC-ACCTTGG-TGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * * * *
56269769 GTGCGGGAACCTCTGACAGCATAGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * **
56269812 GTGCGAGAGCCTCGGGCACCATC-GCCACCTAGG-TGTTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTT-GG-TC
* * * **
56269854 GTACGGGAGCCTCGGACACAATCGGCAAACTAAACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* *
56269897 GTGCGGGATCCTCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCA
56269918 CCGGTAAAAC
Statistics
Matches: 1737, Mismatches: 618, Indels: 180
0.69 0.24 0.07
Matches are distributed among these distances:
40 2 0.00
41 55 0.03
42 683 0.39
43 986 0.57
44 11 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
Found at i:56267611 original size:85 final size:85
Alignment explanation
Indices: 56267489--56269159 Score: 588
Period size: 85 Copynumber: 19.6 Consensus size: 85
56267479 GACCCTCGGG
* * * * * *
56267489 CACCATCGAC-AACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCT
1 CACCATCGGCAAAC-TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
*
56267553 CGGATGTGCGGGAGCCTCAGA
65 AGGATGTGCGGGAGCCTCAGA
* * * * * * *
56267574 CAGCATCAGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGACACCATTGGCACCTCGGTACTA
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* *
56267639 TGATGTGCGGGAGCCTCAGG
66 GGATGTGCGGGAGCCTCAGA
* * * ** * *
56267659 CACCACCGGCAACCTAGGCCCCTGGTCATATGAGG-GCCTTGGGCACCATCGGCTA-CTAGATGC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCG-GGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
*
56267722 TTGGATGTGCGGGAGCCT-AGAA
64 TAGGATGTGCGGGAGCCTCAG-A
* * * * * * * **
56267744 CACCATCGGTAAACTAGGCCCTTGATCGTGCGGGACCCTCGAGCACCTTCGACAACCTAGGCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
*** * * * *
56267809 -TTTTCGTGCGAGATCCTCGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * * * * * *** * * * **
56267830 CACTAACGGC--ACTTGGGCGCTCGGAT-GTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCC
1 CACCATCGGCAAAC-TAGGCCCTTGG-TCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * * *
56267892 CTTGG-TCTTGCAGGAGCCTCGGG
63 CTAGGAT-GTGCGGGAGCCTCAGA
* * * * * ** * *
56267915 CACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-
*
56267980 A-GATGTGTGGGAGCCTCAGA
65 AGGATGTGCGGGAGCCTCAGA
** * * * **
56268000 CACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * ** * *
56268065 TGG-TCGTGTGAAAGCCTCGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * ** * * * * * * ** * **
56268086 CACCATCGGC-ACCTGGGAGCTCAGAT-GTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCG-GCACCTAGGTGC
* * * * *
56268149 TTGGTTATGCGGGAGCCTGAAA
64 TAGGATGTGCGGGAGCCTCAGA
* * * ** * * * * * ** * * **
56268171 CACCATTGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGC
* * * * *
56268234 TTGGTTGCGTGGGAGCCTCGGA
64 TAGGATGTGCGGGAGCCTCAGA
* * * ** *
56268256 AACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGAACACCATCGGCACCTCGGTGCTA
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* *
56268321 TGATGTGCAGGAGCCTC-GTA
66 GGATGTGCGGGAGCCTCAG-A
* ** * * * ** * * *
56268341 CACTATTAGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACCATCGACACCTTGGTGCTT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
*
56268406 GGATGTGCGGGAACCTCAGA
66 GGATGTGCGGGAGCCTCAGA
* * *
56268426 CACCATCGGC-AACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCT
1 CACCATCGGCAAAC-TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* * * *
56268490 ATGATGTGAGAGAGCCTCGGA
65 AGGATGTGCGGGAGCCTCAGA
** * * * * * * * *
56268511 CACTGTCGGCAACCTAGGGCATTGGTCATACGGGAGCCTCAGACACCATCGGCAAACTAGG-ACT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC-
* * * * *
56268575 TTGG-TCGTGCGAGACCCTCGGG
64 TAGGAT-GTGCGGGAGCCTCAGA
* * * * * * *
56268597 CACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* * *
56268662 GGATGTCCGGGATCCTTAGA
66 GGATGTGCGGGAGCCTCAGA
* * * **
56268682 CACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTACTTAGGCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* * ** * *
56268747 TGG-TCGTGTGAAAGCCTCGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * * * * * * * * **
56268768 CACCATCGGC-ACCTGGGCGCTCAGAT-GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * * *
56268831 TTGG-TCGTACGGGAGCCTCGGG
64 TAGGAT-GTGCGGGAGCCTCAGA
* * * * *** * * * * * * * ** ** **
56268853 TACCATTGG-AACCTCGGTGTTATGAT-GTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATC-GGCACCTAGGTGC
* *
56268916 TTGG-TCGTGTGGGAGCCTCAGA
64 TAGGAT-GTGCGGGAGCCTCAGA
* ** * * * *
56268938 CACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATCGACACCTCGGTGCTA
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
** *
56269003 TAATGTGCGGAAGCCTCAGA
66 GGATGTGCGGGAGCCTCAGA
** * * * * * * * * * *
56269023 CACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCATCGACACTTATGTACTT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* * * *
56269088 GGATGTGCAGGAACCCCGGA
66 GGATGTGCGGGAGCCTCAGA
** * * *
56269108 CACCATCAAC-AACATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGG
1 CACCATCGGCAAAC-TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGG
56269160 TGCCTTGATG
Statistics
Matches: 1183, Mismatches: 360, Indels: 86
0.73 0.22 0.05
Matches are distributed among these distances:
84 11 0.01
85 927 0.78
86 243 0.21
87 2 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (85 bp):
CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
GGATGTGCGGGAGCCTCAGA
Found at i:56267621 original size:128 final size:128
Alignment explanation
Indices: 56267349--56267622 Score: 334
Period size: 128 Copynumber: 2.1 Consensus size: 128
56267339 TAAGATGTGT
** **
56267349 GGGAGCCTCAGACACCATCGGTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTGGC
1 GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
* * * ** *
56267414 GCCTAAATGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGC
66 ACCTAAACGCTCAGATGTGCGGGAGCCTCGAACACCATCAGCAAACTAGGCCCTTGGTCATGC
* * * * * **
56267477 AGGACCCTCGGGCACCATCGACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGC
1 GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
*** * *
56267542 ACCTGGGCGCTCGGATGTGCGGGAGCCTC-AGACAGCATCAGCAAACTAGGCCCTTGGTCATGC
66 ACCTAAACGCTCAGATGTGCGGGAGCCTCGA-ACACCATCAGCAAACTAGGCCCTTGGTCATGC
56267605 GGGAGCCTCAGACACCAT
1 GGGAGCCTCAGACACCAT
56267623 TGGCACCTCG
Statistics
Matches: 119, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
127 1 0.01
128 118 0.99
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (128 bp):
GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
ACCTAAACGCTCAGATGTGCGGGAGCCTCGAACACCATCAGCAAACTAGGCCCTTGGTCATGC
Found at i:56267678 original size:213 final size:210
Alignment explanation
Indices: 56267284--56268605 Score: 769
Period size: 213 Copynumber: 6.2 Consensus size: 210
56267274 TGCCATTCCG
* * ** * * * *
56267284 GCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCTCCACCTTGGTGCTAAGATGTGT
1 GCAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGC
** * **
56267349 GGGAGCCTCAGACACCATCG-GTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTGG
65 GGGAGCCTCAGACACCATCGACAAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGG
* ** * * *
56267413 CGCCTAAATGCTTAGATGTGCGGGAGCCTC-GAACACCATTGGCAAACTAGGCCCTTGGTCGTGC
129 CACCTAGGTGCTT-GATGTGCGGGAGCCTCAG-GCACCATCGGCAAACTAGGCCCTTGGTCATGC
*
56267477 AGGACCCTCGGGCACCATC
192 AGGAGCCTCGGGCACCATC
* *
56267496 GACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGTG
1 G-CAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTG
* * * * *
56267561 CGGGAGCCTCAGACAGCATC-AGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGACACCATTG
64 CGGGAGCCTCAGACACCATCGA-CAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTG
* * * * *
56267625 GCACCTCGGTACTATGATGTGCGGGAGCCTCAGGCACCACCGGCAACCTAGGCCCCTGGTCATAT
128 GCACCTAGGTGCT-TGATGTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTC--AT
*
56267690 G-AGG-GCCTTGGGCACCATC
190 GCAGGAGCCTCGGGCACCATC
* *** * * ** * * * * *
56267709 GGCTACTAGATGCTTGGAT-GTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCT-TGATCG
1 -GCAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-CACCTGGGCGCTCAGAT-G
* * * ** * * *
56267772 TGCGGGACCCTC-GAGCACCTTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAA
62 TGCGGGAGCCTCAGA-CACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * * * *** *
56267836 CGGCACTTGGGCGCTCGGATGTGCAAAAGCCT-AGGACACCATCGGCAAACTAGGCCCTTGGTCT
126 TGGCACCTAGGTGCT-TGATGTGCGGGAGCCTCAGG-CACCATCGGCAAACTAGGCCCTTGGTCA
56267900 TGCAGGAGCCTCGGGCACCATCC
189 TGCAGGAGCCTCGGGCACCAT-C
* * * * *
56267923 GCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGT
1 GC-AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGC
* * **
56267988 GGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCTTGC-AGGAGCCTCGGGCACCATCCG
65 GGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATTGG
** * * ** * * * ** * * *
56268052 CTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGAGCTCAGAT-GTG
129 C-ACCTAGGTGCTTGAT-GTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCT-TGGTCATG
** * *
56268115 TGGGAGCCTCAGACACCATC
191 CAGGAGCCTCGGGCACCATC
* ** * ** * * *
56268135 GAAAAACTAGGCCCTTGGTTATGCGGGAGCCT-GAAACACCATTGGCACCTCGGTGCT-ATGATG
1 G--CAACTAGGCCCTTGGTCGTGCGAGAGCCTCG-GGCACCATCGGCACCTGGGCGCTCA-GATG
* ** ** * * **
56268198 TGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGCGTG-G-GAGCCTCGGAAACCA
62 TGCGGGAGCCTCAGACACCATCGACAAACTAGGCCCTTGG-T-CGTGCGAGAGCCTCGGGCACCA
* * ** * * * * * ** *
56268261 TCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTC-GAACACCATCGGC-ACCTCGGTGCTATGA
125 TTGGC-ACCTAGGTGCTTGAT-GTGCGGGAGCCTCAG-GCACCATCGGCAAACTAGGCCCT-TGG
* ** * *
56268324 T-GTGCAGGAGCCTCGTACACTATTA
186 TCATGCAGGAGCCTCGGGCACCA-TC
* * ** * * * **
56268349 GCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACCATCGACACCTTGGTGCTTGGATGTGC
1 GCAA-CTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGC
* * *
56268414 GGGAACCTCAGACACCATCGGC-AACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
65 GGGAGCCTCAGACACCATCGACAAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGG
* * * ** * * * *
56268478 CACCTTGGTGCTATGATGTGAGAGAGCCTC-GGACACTGTCGGCAACCTAGGGCATTGGTCATAC
129 CACCTAGGTGCT-TGATGTGCGGGAGCCTCAGG-CACCATCGGCAAACTAGGCCCTTGGTCATGC
* * *
56268542 GGGAGCCTCAGACACCATC
192 AGGAGCCTCGGGCACCATC
* * *
56268561 GGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCATCGG
1 -GC-AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
56268606 TAACCTAGGC
Statistics
Matches: 851, Mismatches: 212, Indels: 93
0.74 0.18 0.08
Matches are distributed among these distances:
211 6 0.01
212 83 0.10
213 676 0.79
214 79 0.09
215 7 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (210 bp):
GCAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGCG
GGAGCCTCAGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGGCA
CCTAGGTGCTTGATGTGCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTCATGCAGGA
GCCTCGGGCACCATC
Found at i:56267829 original size:298 final size:298
Alignment explanation
Indices: 56267290--56267921 Score: 827
Period size: 298 Copynumber: 2.1 Consensus size: 298
56267280 TCCGGCAACA
** * * *
56267290 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCTCCACCTTGGTGCTAAGATGTGTGGGAGC
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCTCCACCTCGGTACTAAGATGTGCGGGAGC
* * * * * * *
56267355 CTCAGACACCATCGGTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTGGCGCCTAA
66 CTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTAA
* * *
56267420 ATGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGCAGGACCCT
131 ATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCCT
* *
56267485 CGGGCACCATCGACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
196 CGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
*** *
56267550 GCTCGGATGTGCGGGAGCCTCA-GACAGCATCAGCAAAC
261 GCTCGGATGTGCAAAAGCCT-AGGACACCATCAGCAAAC
* * * *
56267588 TAGGCCCTTGGTCATGCGGGAGCCTCAGACACCAT-TGGCACCTCGGTACTATGATGTGCGGGAG
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCT-CCACCTCGGTACTAAGATGTGCGGGAG
* ** * * * *
56267652 CCTCAGGCACCACCGGCAACCTAGGCCCCTGGTCATATGAGGGCCTTGGGCACCATCGGCTACTA
65 CCTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTA
* * * *
56267717 GATGCTTGGATGTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCTTGATCGTGCGGGACCC
130 AATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCC
* ** * * *
56267782 TCGAGCACCTTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAACGGCACTTGGG
195 TCGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGG
*
56267847 CGCTCGGATGTGCAAAAGCCTAGGACACCATCGGCAAAC
260 CGCTCGGATGTGCAAAAGCCTAGGACACCATCAGCAAAC
* *
56267886 TAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATC
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATC
56267922 CGCTACCTAG
Statistics
Matches: 284, Mismatches: 47, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
297 2 0.01
298 282 0.99
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (298 bp):
TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCTCCACCTCGGTACTAAGATGTGCGGGAGC
CTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTAA
ATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCCT
CGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
GCTCGGATGTGCAAAAGCCTAGGACACCATCAGCAAAC
Found at i:56267831 original size:128 final size:128
Alignment explanation
Indices: 56267648--56268166 Score: 584
Period size: 128 Copynumber: 4.1 Consensus size: 128
56267638 ATGATGTGCG
* * * * * ** *
56267648 GGAGCCTCAGGCACCA-CCGGCAACCTAGGCCCCTGGTCATATGAGGGCCTTGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCC-GCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGC
* ** ** * *
56267712 TA-CT-AGATGCTTGGATGTGCGGGAGCCT-AGAACACCATCGGTAAACTAGGCCCTTGATCGTG
65 -ACCTGGGA-GCTCAGATGTGCGGGAGCCTCAG-ACACCATCGAAAAACTAGGCCCTTGGTCTTG
*
56267774 CG
127 CA
* * * * ** * * * * *
56267776 GGACCCTCGAGCACC-TTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAACGGC
1 GGAGCCTCGGGCACCATCCG-CTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGC
* * * *** **
56267840 ACTTGGGCGCTCGGATGTGCAAAAGCCT-AGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCA
65 ACCTGGGAGCTCAGATGTGCGGGAGCCTCA-GACACCATCGAAAAACTAGGCCCTTGGTCTTGCA
56267904 GGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCA
*
56267969 CCTGGGAGCTCAGATGTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCTTGCA
66 CCTGGGAGCTCAGATGTGCGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCTTGCA
56268032 GGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCA
* *
56268097 CCTGGGAGCTCAGATGTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGT-TATGCG
66 CCTGGGAGCTCAGATGTGCGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCT-TGCA
56268160 GGAGCCT
1 GGAGCCT
56268167 GAAACACCAT
Statistics
Matches: 336, Mismatches: 47, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
127 3 0.01
128 327 0.97
129 6 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (128 bp):
GGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCA
CCTGGGAGCTCAGATGTGCGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCTTGCA
Found at i:56268355 original size:128 final size:128
Alignment explanation
Indices: 56268114--56268366 Score: 357
Period size: 128 Copynumber: 2.0 Consensus size: 128
56268104 GCTCAGATGT
* * *
56268114 GTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCTGAAACACCATTG
1 GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCTGAAACACCATCG
* * *
56268179 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGC
66 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTATCAGCAACCTAAGCCCTTGGTTGC
* ** * *
56268242 GTGGGAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCG-AACACCATC
1 GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCT-GAAACACCATC
* *
56268306 GGCACCTCGGTGCTATGATGTGCAGGAGCCTC-GTACACTATTAGCAACCTAGGCCCTTGGT
65 GGCACCTCGGTGCTATGATGTGCAGGAGCCTCAG-ACACTATCAGCAACCTAAGCCCTTGGT
56268367 CGTGCGGGAG
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
127 1 0.01
128 108 0.98
129 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (128 bp):
GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCTGAAACACCATCG
GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTATCAGCAACCTAAGCCCTTGGTTGC
Found at i:56268463 original size:128 final size:128
Alignment explanation
Indices: 56268349--56269712 Score: 646
Period size: 128 Copynumber: 10.7 Consensus size: 128
56268339 TACACTATTA
* * ** * * *
56268349 GCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACCATCGACACCTTGGTGCTTGGATGTGC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
*
56268414 GGGAACCTCAGACACCATCGGC-AACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
66 GGGAGCCTCAGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* ** * * * ** * *
56268477 GC-ACCTTGGTGCTATGAT-GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGG-GCATTGG-TC
1 GCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTGGGTGC-TCGGAT-
* * * * *
56268538 ATACGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCAT
62 GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
56268603 CG
127 CG
* * *
56268605 GTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTCGGATGTCC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* * * * *
56268670 GGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCG
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* * * * * *
56268733 GCTACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* * * * * *
56268798 GGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTG
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *** * * * * * ** ** * ** *
56268861 G-AACCTCGGTGTTATGAT-GTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGG-TCG
1 GCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATC-GGCACCTGGGTGCTCGGAT-G
* * * *
56268923 TGTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATC
63 TGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
56268988 G
128 G
* * ** ** * * ** * * ** *
56268989 AC-ACCTCGGTGCTATAAT-GTGCG-GAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGG-TC
1 GCAACCTAGGCCCT-TGGTCGTGCGAG-AGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGAT-
* * * ** * * *
56269050 GTGCGGGAGCGTC-GAGCACCATC-G-ACACTTATGTACTTGGAT-GTGC-AGGAACCCCGGACA
62 GTGCGGGAGCCTCAGA-CACCATCGGCAAAC-TAGGCCCTTGG-TCGTGCGA-GAGCCTCGGGCA
*
56269110 CCATCA
123 CCATCG
* * * ** * * ** *
56269116 ACAACATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTGCCTTGATGCTATGATGTAC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* ** * ** * * ** * * * *
56269181 GAGAGCCTTGGAGACTGTTGGCAACCTAGGCCCTACGTCGTACGGGAGCCTCGGACACCATCA
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* ** * * * * * *
56269244 GCAAACTAGGCTTTTGGTCGT-CTGGGAGCTTCAGGCACCATCGGCACCTGGGCGGTCGGATGTC
1 GCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTG
* * * ** * * *
56269308 CGGGAGCC-CCGAACATCAGCGGCAAACTAAACCCTTGGTCATG-AAGGAGCCTC-AGCACCATC
65 CGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATC
56269370 G
128 G
* * * * * ** * ** **
56269371 GTAA-CTAGGCCCCTGGTCATGC-AGGAGCCTTGGGCACCGTCGGCAAAAT-AGCCCTTTG-TGG
1 GCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGAT-G
* * ** * * ** * ***
56269432 TGCGAGTA-CCTCGGGTATCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAAACACCA
63 TGCG-GGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
56269494 TCG
126 TCG
* * * * * * * *
56269497 GCAAACTAGGCCCTTGGTCATGAGGGAGCCTCGGGCACTATCGGCAACCTAGGTTCTCAGATGTG
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGATGTG
* * * * * * *
56269562 CTGGAGCCTCGGACACCATCGGTAAACTAGGCACTTGGTCTTG-GAGGAGCCTCTGGCACTATCG
65 CGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCG
* *** * * * * * * *
56269626 GCTA-CTAGGCCCTTGGTCGTATAAAAGCATCAGGTACCATCGACACCTGGGCGCTCGGATGTCC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* **
56269690 GGGAGCCTCGGGTACCATCGGCA
66 GGGAGCCTCAGACACCATCGGCA
56269713 CCTCGGTGCT
Statistics
Matches: 925, Mismatches: 263, Indels: 97
0.72 0.20 0.08
Matches are distributed among these distances:
125 19 0.02
126 63 0.07
127 197 0.21
128 575 0.62
129 71 0.08
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (128 bp):
GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
Found at i:56268655 original size:682 final size:681
Alignment explanation
Indices: 56267870--56269264 Score: 1989
Period size: 682 Copynumber: 2.0 Consensus size: 681
56267860 AAAAGCCTAG
* * *
56267870 GACACCATCGGCAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCC
1 GACACCATCGGCAAACTAGG-CTTTGGTCGTGCAGGACCCTCGGGCACCATCCGCTACCTAGGCC
* **
56267935 CTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGTGGGAGCCTCAGA
65 CTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTCCGGGAGCCTCAGA
56268000 CACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCT
130 CACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCT
*
56268065 TGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGTGGGAGCCTCAGACA
195 TGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGGGAGCCTCAGACA
* * *
56268130 CCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCT-GAAACACCATTGGCACCTCGGTGCTAT
260 CCATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCG-AACACCATTGGAACCTCGGTGCTAT
* * * * *
56268194 GATGTGC-AGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGCGTGGGAGCCTCGGAAA
324 GATGTGCGA-GAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGGGAGCCTCAGAAA
* * * *
56268258 CCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGAACACCATCGGCACCTCGGTGCTATG
388 CCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACACCTCGGTGCTATA
*
56268323 ATGTGCAGG-AGCCTC-GTACACTATTA-GCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGC
453 ATGTGC-GGAAGCCTCAG-ACACT-GTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGC
* * * **
56268385 ACCATCGACACCTT-GGTGCTTGGATGTGCGGGAACCTCAGACACCATCGGCAACATAGGCCCTT
515 ACCATCGACA-CTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACAACATAGGCCCTT
* *
56268449 GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTATGATGTGA-GAGAGCCTCGGACA
579 GGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGT-ACGAGAGCCTCGGACA
* **
56268513 CTGTCGGCAACCTAGGGCATTGGTCATACGGGAGCCTCA
643 CTGTCGGCAACCTAGGCCATACGTCATACGGGAGCCTCA
*
56268552 GACACCATCGGCAAACTAGGACTTTGGTCGTGC-GAGACCCTCGGGCACCAT-CGGTAACCTAGG
1 GACACCATCGGCAAACTAGG-CTTTGGTCGTGCAG-GACCCTCGGGCACCATCCGCT-ACCTAGG
* * * * * *
56268615 CCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTCGGATGTCCGGGATCCTTA
63 CCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTCCGGGAGCCTCA
** * * * *
56268680 GACACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGCTACTTAGGCC
128 GACACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCC
* *
56268745 CTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGCGGGAGCCTCGGA
193 CTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGGGAGCCTCAGA
* * *** *
56268810 CACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTGGAACCTCGGTGTTA
258 CACCATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCGAACACCATTGGAACCTCGGTGCTA
* * * *
56268875 TGATGTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGACA
323 TGATGTGCGAGAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGGGAGCCTCAGAAA
* * *
56268940 CCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATCGACACCTCGGTGCTATA
388 CCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACACCTCGGTGCTATA
*
56269005 ATGTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACC
453 ATGTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACC
* *
56269070 ATCGACACTTATGTACTTGGATGTGCAGGAACCCCGGACACCATCAACAACATAGGCCCTTGGTC
518 ATCGACACTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACAACATAGGCCCTTGGTC
** * * *
56269135 GTGCGAGAGCCTCAGGCACCATCGGTGCCTTGATGCTATGATGTACGAGAGCCTTGGAGACTGTT
583 GTGCGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGTACGAGAGCCTCGGACACTGTC
* * *
56269200 GGCAACCTAGGCCCTACGTCGTACGGGAGCCTCG
648 GGCAACCTAGGCCATACGTCATACGGGAGCCTCA
*
56269234 GACACCATCAGCAAACTAGGCTTTTGGTCGT
1 GACACCATCGGCAAACTAGGC-TTTGGTCGT
56269265 CTGGGAGCTT
Statistics
Matches: 632, Mismatches: 71, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
681 13 0.02
682 616 0.97
683 3 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (681 bp):
GACACCATCGGCAAACTAGGCTTTGGTCGTGCAGGACCCTCGGGCACCATCCGCTACCTAGGCCC
TTGGTCGTGCGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTCCGGGAGCCTCAGAC
ACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTT
GGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGGGAGCCTCAGACAC
CATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCGAACACCATTGGAACCTCGGTGCTATGA
TGTGCGAGAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGGGAGCCTCAGAAACCA
TCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACACCTCGGTGCTATAATG
TGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACCATC
GACACTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACAACATAGGCCCTTGGTCGTG
CGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGTACGAGAGCCTCGGACACTGTCGGC
AACCTAGGCCATACGTCATACGGGAGCCTCA
Found at i:56268804 original size:554 final size:547
Alignment explanation
Indices: 56267433--56268935 Score: 1462
Period size: 554 Copynumber: 2.7 Consensus size: 547
56267423 CTTAGATGTG
*
56267433 CGGGAGCCTC-GAACACCATTGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTCGGGCACCATCG
1 CGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTCGGGCACCATCG
* * * *
56267497 ACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGTGC
65 ATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGAGCTCGGATGTGC
* * * *
56267562 GGGAGCCTCAGACAGCATCAGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGACACCATTGGC
130 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGACACCATTGGC
* * * * *
56267627 ACCTCGGTACTATGATGTGCGGGAGCCTCAGGCACCACCGGCAACCTAGGCCCCTGGTCATATGA
195 ACCTCGGTACTATGATGTG-GAGAGCCTCAGGCACCATCGGC-ACCTAGGCCTC-GG--ATGTGG
* * * *** *
56267692 GG-GCCTTGGGCACCATCGGC-TACTAGATGCTTGGAT-GTGCGGGAGCCTAGAACACCATCGGT
255 GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGAACACCATCGG-
* * ** * * **
56267754 AAACTAGGCCCT-TGATCGTGCGGGACCCTCGAGCACCT-TCGACAACCTAGGCCCTTTTTCGTG
318 AACCTCGGTGCTATGAT-GTGC-GGAACCTCGA-CA-CTATTG-CAACCTAGGCCCTTGGTCGTG
* * ** * *
56267817 CGAGATCCTCGGGCACTAACGGCACTTGGGCGCTCGGATGTGCAAAAGCCTAGGACACCATCGGC
378 CGGGAGCCTCAAGCACCAACGACACTTGGGCGCTCGGATGTGCAAAAGCCTAGGACACCATCGGC
* * *
56267882 AAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTG
443 AAACTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGATCGTGAG
* * * *
56267947 AAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTG
508 AAAGCCTCGGACACCATCGGCACCTAGGAGCTCAGATATA
* ** * *
56267987 TGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCG
1 CGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTCGGGCACCAT-CG
* * * * *
56268052 CT-ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGT
65 ATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGAGCTCGGATGTGC
** *
56268116 GGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGT-TATGCGGGAGCCT-GAAACACCATTG
130 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCT-TGCGGGAGCCTCG-GACACCATTG
* * * ** * * * * *
56268179 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGCGT
193 GCACCTCGGTACTATGATGTGGA-GAGCCTCAGGCACCATCGG-CACCT-AGGCCTCGGATGTG-
* * *
56268244 GGGAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGAACACCATCGGC
254 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGGA
*
56268309 ACCTCGGTGCTATGATGTGCAGGAGCCTCGTACACTATTAGCAACCTAGGCCCTTGGTCGTGCGG
319 ACCTCGGTGCTATGATGTGC-GGAACCTCG-ACACTATT-GCAACCTAGGCCCTTGGTCGTGCGG
* * * * **
56268374 GAGCGTCAAGCACCATCGACACCTT-GGTGCTTGGATGTGCGGGAA-CCTCA-GACACCATCGGC
381 GAGCCTCAAGCACCAACGACA-CTTGGGCGCTCGGATGTGC-AAAAGCCT-AGGACACCATCGGC
* * **
56268436 -AACATAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTATGAT-GT
443 AAAC-TAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATCCGCTACCTAGGCCCT-TGATCGT
* ** * *
56268497 GAGAGAGCCTCGGACACTGTCGGCAACCTAGG-GCAT-TGGTCATA
505 GAGAAAGCCTCGGACACCATCGGC-ACCTAGGAGC-TCAGAT-ATA
* *
56268541 CGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTCGTGC-GAGACCCTCGGGCACCATCG
1 CGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCAG-GACCCTCGGGCACCATCG
* * * *
56268605 GTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTCGGATGTCC
65 ATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGAGCTCGGATGTGC
* * * * *
56268670 GGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGC
130 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGACACCATTGGC
* * ** * * * * *
56268735 TACTTAGGCCCT-TGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGCG
195 -ACCTCGGTACTATGAT-GTG-GAGAGCCTCAGGCACCATCGGCACCTAGGC-CTCGGATGTG-G
* * *** *
56268799 GGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTGGAA
255 GGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGGAA
* * * * *
56268864 CCTCGGTGTTATGATGTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGGTCGTGTGGG
320 CCTCGGTGCTATGATGTGCG-GAACCTC-GACACTAT-TGCAACCTAGGCCCTTGGTCGTGCGGG
56268929 AGCCTCA
382 AGCCTCA
56268936 GACACCATTG
Statistics
Matches: 772, Mismatches: 142, Indels: 70
0.78 0.14 0.07
Matches are distributed among these distances:
552 2 0.00
553 48 0.06
554 641 0.83
555 80 0.10
556 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (547 bp):
CGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTCGGGCACCATCGA
TAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGAGCTCGGATGTGCG
GGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGACACCATTGGCA
CCTCGGTACTATGATGTGGAGAGCCTCAGGCACCATCGGCACCTAGGCCTCGGATGTGGGGAGCC
TCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATCGGAACCTCGG
TGCTATGATGTGCGGAACCTCGACACTATTGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAAG
CACCAACGACACTTGGGCGCTCGGATGTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCCCTT
GGTCGTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGATCGTGAGAAAGCCTCGGACA
CCATCGGCACCTAGGAGCTCAGATATA
Found at i:56268832 original size:213 final size:212
Alignment explanation
Indices: 56268581--56269159 Score: 577
Period size: 213 Copynumber: 2.7 Consensus size: 212
56268571 GACTTTGGTC
* * * * * *
56268581 GTGCGAGACCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
56268646 CGGCACCTGGGTGCTCGGATGTCCGGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTCTT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAA-CTAGGCCCTTGGTCGT
* * * *
56268711 GCGGGAGCCTCGGGCACCATCGGC-TACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATC
130 GCGGGAGCCTCAGGCACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATC
* * *
56268775 GGCACCTGGGCGCTCA-GAT
194 GACACCTCGGCGCT-ATAAT
* * * *
56268794 GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * ** * *
56268859 TGGAACCTCGGTGTTATGATGTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAA-CTAGGCCCTTGGTCGT
* * * * *
56268924 GTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATCG
130 GCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATCG
*
56268989 ACACCTCGGTGCTATAAT
195 ACACCTCGGCGCTATAAT
* * ** * * *
56269007 GTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * * *
56269072 CGACACTTATGTACTTGGATGTGCAGGAACCCCGGACACCATCAACAACATAGGCCCTTGGTCGT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAAC-TAGGCCCTTGGTCGT
*
56269137 GCGAGAGCCTCAGGCACCATCGG
130 GCGGGAGCCTCAGGCACCATCGG
56269160 TGCCTTGATG
Statistics
Matches: 288, Mismatches: 75, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
212 2 0.01
213 284 0.99
214 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (212 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAACTAGGCCCTTGGTCGTG
CGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATCGA
CACCTCGGCGCTATAAT
Found at i:56269864 original size:42 final size:41
Alignment explanation
Indices: 56269661--56269877 Score: 141
Period size: 42 Copynumber: 5.2 Consensus size: 41
56269651 AGCATCAGGT
* * * * *
56269661 ACCATCGACACCTGGGCGCTCGGATGTCCGGGAGCCTCGGGT
1 ACCATCGACACCTAGGTG-TTGGATGTGCGGGAGCCTCGGGC
* * * *
56269703 ACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTTGAGC
1 ACCATCGACACCTAGGTG-T-TGGATGTGCGGGAGCCTCGGGC
* * * * *
56269745 ACCACCGACACCTTGGTGTTGGATGTGCGGGAACCTCTGAC
1 ACCATCGACACCTAGGTGTTGGATGTGCGGGAGCCTCGGGC
* * * ** *
56269786 AGCATAGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGC
1 ACCATCGAC-ACCTAGG-TGTTGGAT-GTGCGGGAGCCTCGGGC
* * *
56269829 ACCATCGCCACCTAGGTGTTCGGATGTACGGGAGCCTCGGAC
1 ACCATCGACACCTAGGTGTT-GGATGTGCGGGAGCCTCGGGC
*
56269871 ACAATCG
1 ACCATCG
56269878 GCAAACTAAA
Statistics
Matches: 132, Mismatches: 36, Indels: 14
0.73 0.20 0.08
Matches are distributed among these distances:
40 1 0.01
41 23 0.17
42 84 0.64
43 24 0.18
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (41 bp):
ACCATCGACACCTAGGTGTTGGATGTGCGGGAGCCTCGGGC
Found at i:56269899 original size:85 final size:84
Alignment explanation
Indices: 56269728--56269920 Score: 226
Period size: 85 Copynumber: 2.3 Consensus size: 84
56269718 GTGCTATGAT
* * * * *
56269728 GTGCGGGAGCCTTGAGCACCACCGACACCTTGGTGTTGGATGTGCGGGAACCTCTGACAGCATAG
1 GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTTGGATGTACGGGAACCTCGGACAGCATAG
* **
56269793 GCAACCTAGGCCCTTGGTC
66 GCAAACTAAACCCTTGGTC
* * * *
56269812 GTGCGAGAGCCTCGGGCACCATCGCCACCTAGGTGTTCGGATGTACGGGAGCCTCGGACA-CAAT
1 GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTT-GGATGTACGGGAACCTCGGACAGC-AT
*
56269876 CGGCAAACTAAACCCTTGGTC
64 AGGCAAACTAAACCCTTGGTC
* *
56269897 GTGCGGGATCCTCAGGCACCACCG
1 GTGCGGGAGCCTCGGGCACCACCG
56269921 GTAAAACCGT
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
84 32 0.36
85 58 0.64
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTTGGATGTACGGGAACCTCGGACAGCATAG
GCAAACTAAACCCTTGGTC
Found at i:56275134 original size:43 final size:43
Alignment explanation
Indices: 56275080--56275250 Score: 218
Period size: 43 Copynumber: 4.0 Consensus size: 43
56275070 GTGCTAGAAT
*
56275080 GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* * * * * ** *
56275123 GTGCGAGAGCCTTGGGCACCATCAGC-ACCTAAGTGCTTGGTT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* *
56275165 GTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
* *
56275208 GTGCGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
56275251 ATGCAAGAGC
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
42 33 0.32
43 71 0.68
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
Found at i:56275173 original size:85 final size:85
Alignment explanation
Indices: 56275025--56275226 Score: 278
Period size: 85 Copynumber: 2.4 Consensus size: 85
56275015 TCCGGTAGCA
* * * * **
56275025 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGCACGTGGGTGCTAGAATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
56275090 CTCGAACACCATCGGCAACC
66 CTCGAACACCATCGGCAAAC
* * ** *
56275110 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAAGTGCTTGGTTGTGTGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
56275175 CTCGGACACCATCGGCAAAC
66 CTCGAACACCATCGGCAAAC
*
56275195 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCAC
56275227 TATCGGCAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 102 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
CTCGAACACCATCGGCAAAC
Found at i:56276262 original size:43 final size:43
Alignment explanation
Indices: 56276153--56276575 Score: 326
Period size: 43 Copynumber: 9.9 Consensus size: 43
56276143 TCCGGTAGCA
* * * *
56276153 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGC-ACG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
56276195 TGGGTGCTAGAAT-GTGCGGGAGCCTCGAACACCATCGGCAACC
1 TAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
56276238 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
56276280 TAAGTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
56276323 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
56276366 TAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCATCGTG--ACT
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GCAACC
* * * * * *
56276408 TGGGCACTCGGAT-GTGCGGGAGCATCAGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
56276451 TAGGCCCTTGGTCTTGCGAGAGCCTTGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
56276493 TAGGCGCTCGAAT-GTTG-GGGAGCCTCGGAG-ACTATCGGCAAAC
1 TAGGCCCTTG-GTCG-TGCGGGAGCCTCGG-GCACCATCGGCAACC
* * * *
56276536 TAAGCCCTTGGTCATGCGGGAGCTTCGGGTACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
56276576 CATCGGTGGT
Statistics
Matches: 287, Mismatches: 78, Indels: 31
0.72 0.20 0.08
Matches are distributed among these distances:
41 1 0.00
42 122 0.43
43 163 0.57
44 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:56276301 original size:85 final size:85
Alignment explanation
Indices: 56276153--56276354 Score: 278
Period size: 85 Copynumber: 2.4 Consensus size: 85
56276143 TCCGGTAGCA
* * * * **
56276153 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGCACGTGGGTGCTAGAATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
56276218 CTCGAACACCATCGGCAACC
66 CTCGAACACCATCGGCAAAC
* * ** *
56276238 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAAGTGCTTGGTTGTGTGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
56276303 CTCGGACACCATCGGCAAAC
66 CTCGAACACCATCGGCAAAC
*
56276323 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCAC
56276355 TATCGGCAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 102 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
CTCGAACACCATCGGCAAAC
Found at i:56276388 original size:128 final size:128
Alignment explanation
Indices: 56276208--56276497 Score: 368
Period size: 128 Copynumber: 2.3 Consensus size: 128
56276198 GTGCTAGAAT
** * * *
56276208 GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
** * * * * *
56276273 CAG-CACCTAAGTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
66 C-GTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
*
56276336 GTGCGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
* * ** *
56276401 CGTGACTTGGGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAACCTAGGCCCTTGGTC
66 CGTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
* * *
56276464 TTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
56276498 GCTCGAATGT
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
127 9 0.06
128 130 0.94
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
CGTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
Found at i:56276453 original size:85 final size:85
Alignment explanation
Indices: 56276299--56276576 Score: 301
Period size: 85 Copynumber: 3.3 Consensus size: 85
56276289 GGTTGTGTGG
* * * * * *
56276299 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACTATCGGCA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCACTCGAAT-GTGCGGGAGCCTCGGACACTATCGGCA
*
56276363 ACCTAGGCCCTTGGTCATGCAA
64 ACCTAGGCCCTTGGTCATGCGA
* * * * * *
56276385 GAGCCTCGGGCACCATCGTG-ACTTGGGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAA
1 GAGCCTCGGGCACCATCG-GCACCTAGGCACTCGAATGTGCGGGAGCCTCGGACACTATCGGCAA
*
56276449 CCTAGGCCCTTGGTCTTGCGA
65 CCTAGGCCCTTGGTCATGCGA
* * *
56276470 GAGCCTTGGGCACCATCGGCACCTAGGCGCTCGAATGTTG-GGGAGCCTCGGAGACTATCGGCAA
1 GAGCCTCGGGCACCATCGGCACCTAGGCACTCGAATG-TGCGGGAGCCTCGGACACTATCGGCAA
* * *
56276534 ACTAAGCCCTTGGTCATGCGG
65 CCTAGGCCCTTGGTCATGCGA
* *
56276555 GAGCTTCGGGTACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAC
56276577 ATCGGTGGTC
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
84 1 0.01
85 137 0.86
86 20 0.13
87 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCACTCGAATGTGCGGGAGCCTCGGACACTATCGGCAAC
CTAGGCCCTTGGTCATGCGA
Found at i:56276520 original size:213 final size:213
Alignment explanation
Indices: 56276153--56276575 Score: 582
Period size: 213 Copynumber: 2.0 Consensus size: 213
56276143 TCCGGTAGCA
* * * **
56276153 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGCACGTGGGTGCTAGAATGTGCGGGAGC
1 TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCGGCACGTGGGCACTAGAATGTGCGGGAGC
*
56276218 CTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
66 ATCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
* * ** * *
56276283 GTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
131 GCGCTCGAATGTGTGGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAGCCT
*
56276348 CGGGCACTATCGGCAACC
196 CGGGCACCATCGGCAACC
* * * *
56276366 TAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCATCGTG-ACTTGGGCACTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCG-GCACGTGGGCACTAGAATGTGCGGGAG
* *
56276430 CATC-AGACACCATCGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTTGGGCACCATCGGCACCT
65 CATCGA-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCT
* * *
56276494 AGGCGCTCGAATGT-TGGGGAGCCTCGGAGACTATCGGCAAACTAAGCCCTTGGTCATGCGGGAG
129 AAGCGCTCGAATGTGT-GGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAG
* *
56276558 CTTCGGGTACCATCGGCA
193 CCTCGGGCACCATCGGCA
56276576 CATCGGTGGT
Statistics
Matches: 183, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
212 2 0.01
213 180 0.98
214 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (213 bp):
TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCGGCACGTGGGCACTAGAATGTGCGGGAGC
ATCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
GCGCTCGAATGTGTGGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAGCCT
CGGGCACCATCGGCAACC
Found at i:56285094 original size:43 final size:43
Alignment explanation
Indices: 56285047--56285821 Score: 306
Period size: 42 Copynumber: 18.3 Consensus size: 43
56285037 AAGCCTCAAA
* * * *
56285047 CACCATCGGTAACCTAGGTCCTTGGTCGTG-TGAGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGA-AGCCTCGGG
** * *
56285090 CACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGAAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGGG
* * *
56285132 CACCATCGGCAA-CGAGGCCCTTGGTCGTGCGGTAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
*
56285174 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
* * ** * * * *
56285217 CACCATC--AAGACCTGGGAGCTCTGAT-GTGCGGGAGCATCGGA
1 CACCATCGGCA-ACCTAGGCCCT-TGGTCGTGCGGAAGCCTCGGG
* * *
56285259 CACCATCGGCAACCTAAGCCCTTGGTCGTGC-AAGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGA-AGCCTCGGG
* * *
56285302 CACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAGCCTCGGAG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGG-G
* * * ** ** * *
56285345 -ACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCCTCGGC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
* ** * ** *
56285387 CACCATCGGC-ACCTCGGTGCATGGAT-GTATGGAAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGGG
** * * * * *
56285429 CACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTCGAG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
* * ** * * *
56285472 CACCATCGAC-ACCTCGGTGCTTGGAT-GTGCAGTAA-CCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGC-GGAAGCCTCGGG
* * * *
56285514 CACCATCAGCAACCTAGGCCTTTGGTCGTAC-GAGAGCCTCGAG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGA-AGCCTCGGG
* * * * * * *
56285557 CACCATCGAC-ACCTAGGCGCTCGGAT-GTGTGGGAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGGG
* * ** ** * *
56285599 CACCATCGACAA-CTTGGTGCTT-GTATATGCGGGAGCCTCGAG
1 CACCATCGGCAACCTAGGCCCTTGGT-CGTGCGGAAGCCTCGGG
* * ** * * * * *
56285641 CACCACCGGC-ACCTTGGTGGCTCGGAT-GTCCGGGAGCCTCAGA
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGAAGCCTCGGG
* * ** * * * *
56285684 CACCATCAGCAACCTTGGTGCTT-AT-GTGCAGAAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
* * * * ** *
56285725 CACCATCAGCAAACTAGGCCCTTGGTTGTACGGGGGTCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
* * *
56285768 CACCATCGGTATCCTAGGCCCTTGGTTGTGC-GAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGA-AGCCTCGGG
56285811 CACCATCGGCA
1 CACCATCGGCA
56285822 CCTGGGTGCT
Statistics
Matches: 543, Mismatches: 150, Indels: 78
0.70 0.19 0.10
Matches are distributed among these distances:
40 1 0.00
41 38 0.07
42 247 0.45
43 247 0.45
44 9 0.02
45 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGG
Found at i:56285189 original size:85 final size:85
Alignment explanation
Indices: 56285027--56285223 Score: 247
Period size: 85 Copynumber: 2.3 Consensus size: 85
56285017 CTTGACACTA
* * * * * *
56285027 GGATGTGTGGAAGCCTCAAACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGGGCA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAACCGAGGCCCTTGGTCGTGCGAGAGCCTTGGGCA
**
56285092 CCATCGGCACCTAGGTGCTT
66 CCATCGGCACCTAGGCCCTT
56285112 GGATGTGCGGAAGCCTCAGACACCATCGGCAA-CGAGGCCCTTGGTCGTGCG-GTAGCCTTGGGC
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAACCGAGGCCCTTGGTCGTGCGAG-AGCCTTGGGC
56285175 ACCATCGGCAACCTAGGCCCTT
65 ACCATCGGC-ACCTAGGCCCTT
* * *
56285197 GG-TCGTGCGGGAGCCTCGGGCACCATC
1 GGAT-GTGCGGAAGCCTCAGACACCATC
56285224 AAGACCTGGG
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
83 1 0.01
84 36 0.37
85 61 0.62
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.20
Consensus pattern (85 bp):
GGATGTGCGGAAGCCTCAGACACCATCGGCAACCGAGGCCCTTGGTCGTGCGAGAGCCTTGGGCA
CCATCGGCACCTAGGCCCTT
Found at i:56285247 original size:85 final size:84
Alignment explanation
Indices: 56285080--56285861 Score: 434
Period size: 85 Copynumber: 9.2 Consensus size: 84
56285070 GGTCGTGTGA
* ** * * * *
56285080 GAGCCTTGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGAAGCCTCAGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCAGCA
* ** **
56285143 ACGAGGCCCTTGG-TCGTGCGG
65 CCTCGGTGC-TGGAT-GTGCGG
* *
56285164 TAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAAG-A
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-AGCA
* * *
56285228 CCTGGGAGCTCTGATGTGCGG
65 CCTCGGTGCT-GGATGTGCGG
* * * ** * *
56285249 GAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAC
* *
56285314 CTAGGCGCTCGGATGTGCGG
66 CTCGGTGCT-GGATGTGCGG
* * * ** ** * *
56285334 GAGCCTCGGAG-ACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCCTCGGCCACCATCGGCA
1 GAGCCTCGG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCA
**
56285398 CCTCGGTGCATGGATGTATGG
65 CCTCGGTGC-TGGATGTGCGG
* * ** * * * *
56285419 AAGCCTTGGGCACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTCGAGCACCATC-GACA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAG-CA
*
56285483 CCTCGGTGCTTGGATGTGCAG
65 CCTCGGTGC-TGGATGTGCGG
* * * * * * * * *
56285504 TAACCTCAGACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCGAGCACCATC-GACA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAG-CA
* * *
56285568 CCTAGGCGCTCGGATGTGTGG
65 CCTCGGTGCT-GGATGTGCGG
* * * * ** ** * * *
56285589 GAGCCTCAGACACCATCGACAA-CTTGGTGCTT-GTATATGCGGGAGCCTCGAGCACCACCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCACCATCAGCA
* *
56285652 CCTTGGTGGCTCGGATGTCCGG
65 CCTCGGT-GCT-GGATGTGCGG
* * * * ** * * * * *
56285674 GAGCCTCAGACACCATCAGCAACCTTGGTGCTT-AT-GTGCAGAAGCCTCAGACACCATCAGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGC-A
* * ** * *
56285737 ACTAGGCCCTTGGTTGTACGG
65 CCTCGGTGC-TGGATGTGCGG
* * * * * * *
56285758 GGGTCTCGGGCACCATCGGTATCCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAC
*
56285823 CTGGGTGCTCGGATGTGCGG
66 CTCGGTGCT-GGATGTGCGG
* **
56285843 GAACCTCGAACACCATCGG
1 GAGCCTCGGGCACCATCGG
56285862 GACCTTGGTG
Statistics
Matches: 540, Mismatches: 138, Indels: 39
0.75 0.19 0.05
Matches are distributed among these distances:
83 2 0.00
84 108 0.20
85 396 0.73
86 34 0.06
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (84 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCAC
CTCGGTGCTGGATGTGCGG
Found at i:56285264 original size:127 final size:128
Alignment explanation
Indices: 56285046--56285350 Score: 354
Period size: 127 Copynumber: 2.4 Consensus size: 128
56285036 GAAGCCTCAA
* * * * * * *
56285046 ACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGGGCACCATCGGCACCTAGGTGCT
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCACCTAGGAGCT
* * * *
56285111 TGGATGTGCGGAAGCCTCAGACACCATCGGCAA-CGAGGCCCTTGGTCGTGC-GGTAGCCTTGG
66 TGGATGTGCGGAAGCATCAGACACCATCGGCAACCGAAGCCCTTGGTCGTGCAAG-AGCCTCGG
* *
56285173 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAAG-ACCTGGGAGC
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-AGCACCTAGGAGC
* * *
56285237 TCT-GATGTGCGGGAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGG
65 T-TGGATGTGCGGAAGCATCAGACACCATCGGCAACCGAAGCCCTTGGTCGTGCAAGAGCCTCGG
* *
56285301 ACACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAGCCTCGGAG-ACCATC
1 ACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-GCACCATC
56285351 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
127 115 0.75
128 37 0.24
129 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (128 bp):
ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAGCACCTAGGAGCT
TGGATGTGCGGAAGCATCAGACACCATCGGCAACCGAAGCCCTTGGTCGTGCAAGAGCCTCGG
Found at i:56285351 original size:170 final size:168
Alignment explanation
Indices: 56285080--56285861 Score: 513
Period size: 170 Copynumber: 4.6 Consensus size: 168
56285070 GGTCGTGTGA
* * * **
56285080 GAGCCTTGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCG-GAAGCCTCAGACACCATCGGC
1 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTC-GACACCATCGGC
* * * * * * * *
56285142 AACGAGGCCCTTGG-TCGTGCGGTAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
63 ACCTAGGCGCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACG
* * * *
56285206 GGAGCCTCGGGCACCATCAAG-ACCTGGGAGCTCTGATGTGCGG
127 GGAGCCTCGGGCACCATC-AGCACCTAGGCGCT-GGATGTACGG
* * * *
56285249 GAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGGCAC
1 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GACACCATCGGCAC
* * * * ** *
56285314 CTAGGCGCTCGGATGTGCGGGAGCCTCGGAGACCATCGGTAAACTAAGCCCTTGGTTATATGGGA
65 CTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGA
* * * * *
56285379 GCCTCGGCCACCATCGGCACCTCGGTGCATGGATGTATGG
130 GCCTCGGGCACCATCAGCACCTAGGCGC-TGGATGTACGG
* * * * * * * * *
56285419 AAGCCTTGGGCACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGA-CACCATCGGCAC
* * * * * * * * * *
56285484 CTCGGTGCTTGGATGTGCAGTAACCTCAGACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGA
65 CTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGA
* **
56285549 GCCTCGAGCACCATC-GACACCTAGGCGCTCGGATGTGTGG
130 GCCTCGGGCACCATCAG-CACCTAGGCGCT-GGATGTACGG
* * ** ** * *
56285589 GAGCCTCAGACACCATCGACAA-CTTGGTGCTT-GTATATGCGGGAGCCTCGAGCACCACCGGCA
1 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGT-CGTGCGAGAGCCTCGA-CACCATCGGCA
* * * * * * ** * * *
56285652 CCTTGGTGGCTCGGATGTCCGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTT-AT-GTGCAG
64 CCTAGG-CGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGG
* * * * * *
56285715 AAGCCTCAGACACCATCAGCAAACTAGGCCCTTGGTTGTACGG
128 GAGCCTCGGGCACCATCAGC-ACCTAGGCGC-TGGATGTACGG
* * * ** * * *
56285758 GGGTCTCGGGCACCATCGGTATCCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCAC
1 GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GACACCATCGGCAC
* * * *
56285823 CTGGGTGCTCGGATGTGCGGGAACCTCGAACACCATCGG
65 CTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGG
56285862 GACCTTGGTG
Statistics
Matches: 472, Mismatches: 124, Indels: 34
0.75 0.20 0.05
Matches are distributed among these distances:
168 18 0.04
169 118 0.25
170 330 0.70
171 6 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (168 bp):
GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGACACCATCGGCACC
TAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
CCTCGGGCACCATCAGCACCTAGGCGCTGGATGTACGG
Found at i:56285690 original size:255 final size:255
Alignment explanation
Indices: 56285174--56285698 Score: 598
Period size: 255 Copynumber: 2.1 Consensus size: 255
56285164 TAGCCTTGGG
* * * * *
56285174 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAAGACCTGGGAGCTC
1 CACCATCAGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTCGGAGCTC
* * * * *
56285239 TGATGTGCGGGAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGACA
66 TGATGTGCAGGAACATCAGACACCATCAGCAACCTAAGCCCTTGGTCGTACAAGAGCCTCGGACA
* * *
56285304 CCATCGGCACCTAGGCGCTCGGATGTGCGGGAGCCTCGGAGACCATCGGTAAACTAAGCCCTTGG
131 CCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGTAAACTAAGCCCTTGG
* * ** *
56285369 TTATATGGGAGCCTCGGCCACCATCGGCACCTCGGTGCATGGATGTATGGAAGCCTTGGG
196 TTATATGGGAGCCTCGGCCACCACCGGCACCTCGGTGCATGGATGTACGGAAGCCTCAGA
* * * * *
56285429 CACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTCGAGCACCATCGACACCTCGGTGCT-
1 CACCATCAGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTCGGAGCTC
* * * * *
56285493 TGGATGTGCAGTAACCTCAGACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTC-GAG
66 T-GATGTGCAGGAACATCAGACACCATCAGCAACCTAAGCCCTTGGTCGTACAAGAGCCTCGGA-
* ** **
56285557 CACCATCGACACCTAGGCGCTCGGATGTGTGGGAGCCTCAGACACCATC-G-ACAACTTGGTGCT
129 CACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGTA-AACTAAGCCCT
* * *
56285620 T-G-TATATGCGGGAGCCTCGAG-CACCACCGGCACCTTGGTGGC-TCGGATGTCCGGGAGCCTC
193 TGGTTATAT--GGGAGCCTCG-GCCACCACCGGCACCTCGGT-GCAT-GGATGTACGGAAGCCTC
56285681 AGA
253 AGA
56285684 CACCATCAGCAACCT
1 CACCATCAGCAACCT
56285699 TGGTGCTTAT
Statistics
Matches: 224, Mismatches: 38, Indels: 16
0.81 0.14 0.06
Matches are distributed among these distances:
252 5 0.02
253 2 0.01
254 39 0.17
255 178 0.79
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (255 bp):
CACCATCAGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTCGGAGCTC
TGATGTGCAGGAACATCAGACACCATCAGCAACCTAAGCCCTTGGTCGTACAAGAGCCTCGGACA
CCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGTAAACTAAGCCCTTGG
TTATATGGGAGCCTCGGCCACCACCGGCACCTCGGTGCATGGATGTACGGAAGCCTCAGA
Found at i:56303532 original size:43 final size:43
Alignment explanation
Indices: 56303435--56303607 Score: 208
Period size: 42 Copynumber: 4.1 Consensus size: 43
56303425 CTCCCCACTG
*
56303435 TCGGTACCTTGGTGGCTCGGATGTGCGGGAG-CTCGAGCAGCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
56303477 TCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGTA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * *
56303520 TTGGCACTTTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
56303562 TCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCCCGAG-ACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
56303604 TCGG
1 TCGG
56303608 TAACTTTAGC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 69 0.63
43 40 0.37
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
Found at i:56303569 original size:85 final size:85
Alignment explanation
Indices: 56303443--56303599 Score: 226
Period size: 85 Copynumber: 1.8 Consensus size: 85
56303433 TGTCGGTACC
* * * *
56303443 TTGGTGGCTCGGATGTGCGGGAGCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAG
1 TTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGAG
*
56303508 CCTCGAGCAGTATTGGCACT
66 CCCCGAGCAGTATTGGCACT
* * *
56303528 TTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGA
1 TTGGTGGCTCGGATGTGCGGCAG-CTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGA
56303592 GCCCCGAG
65 GCCCCGAG
56303600 ACCATCGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 15 0.24
85 48 0.76
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (85 bp):
TTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGAG
CCCCGAGCAGTATTGGCACT
Found at i:56303614 original size:85 final size:85
Alignment explanation
Indices: 56303435--56303614 Score: 211
Period size: 85 Copynumber: 2.1 Consensus size: 85
56303425 CTCCCCACTG
* * * * *
56303435 TCGGTACCTTGGTGGCTCGGATGTGCGGGAGCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATG
1 TCGGTACTTTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATG
* **
56303500 TGCAGGAGCCTCGAGCAGTA
66 TGCAGGAGCCCCGAGCACCA
* * * *
56303520 TTGGCACTTTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCATCGGCACCTTGGTGCCTCGGAT
1 TCGGTACTTTGGTGGCTCGGATGTGCGGCAG-CTCAAGCACCATCGGCACCTTGGTGCCTCAGAT
*
56303584 GTGCGGGAGCCCCGAG-ACCA
65 GTGCAGGAGCCCCGAGCACCA
56303604 TCGGTAACTTT
1 TCGGT-ACTTT
56303615 AGCCCTTGTT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
84 20 0.26
85 58 0.74
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (85 bp):
TCGGTACTTTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATG
TGCAGGAGCCCCGAGCACCA
Found at i:56304039 original size:57 final size:58
Alignment explanation
Indices: 56303914--56304026 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 58
56303904 CGATGAACCG
*
56303914 AGTCCCTCCCCAATGCCAAAGGTACATGTTCGGTACCCAACAATGAATGAATCGTCCC
1 AGTCCCTCCCCAATGCCAAAGGTACATATTCGGTACCCAACAATGAATGAATCGTCCC
* *
56303972 AGTCCCTCCCCAAT-CCAAGGGTAGA-ATTCGGATACCCAACAATGAATGAATCGTC
1 AGTCCCTCCCCAATGCCAAAGGTACATATTCGG-TACCCAACAATGAATGAATCGTC
56304027 TTGGTCCCTC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 5 0.10
57 32 0.63
58 14 0.27
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (58 bp):
AGTCCCTCCCCAATGCCAAAGGTACATATTCGGTACCCAACAATGAATGAATCGTCCC
Found at i:56304123 original size:43 final size:42
Alignment explanation
Indices: 56304076--56304601 Score: 495
Period size: 43 Copynumber: 12.6 Consensus size: 42
56304066 TGGTGGATCA
* * *
56304076 GATGTGCAGGAGCCTCGAACCCCATCGGAACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
* * * *
56304119 GATGTGTGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
* * *
56304161 GATGTACGAGAGCCTCGACCACCATCGGTAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * *
56304204 GATGTGCGAGAGCCTCGAGCACCATC-GATATCATGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGGA-ACCTTGGTGCTTG
* * * * *
56304246 TATGTACGGGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
*
56304289 GATGTGCGGGAGCCTC-AGACACTATCGGCAACCTTGGTGC---
1 GATGTGCGGGAGCCTCGA-ACACCATCGG-AACCTTGGTGCTTG
* * *
56304329 --T-T---GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTT
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
**
56304365 GATGTGCGGGAGCCTCGGCCACCATCGGCAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * *
56304408 GATGTACGAGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * * *
56304450 TATGTGCGGGAGCCTTGAACACCATCAGCACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
*
56304493 AATGTGCGGGAGCCTC-AGACACCATCGGCAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGA-ACACCATCGG-AACCTTGGTGCTTG
* * *
56304536 GATGTGTGGGAGCCTC-AAGCACCATCGGCACCTTAGTGCTTG
1 GATGTGCGGGAGCCTCGAA-CACCATCGGAACCTTGGTGCTTG
*
56304578 GATGTGCGGGAGCCTCGAGCACCA
1 GATGTGCGGGAGCCTCGAACACCA
56304602 AAGCTAAAGC
Statistics
Matches: 399, Mismatches: 61, Indels: 47
0.79 0.12 0.09
Matches are distributed among these distances:
33 10 0.03
34 16 0.04
35 1 0.00
37 1 0.00
38 2 0.01
39 1 0.00
41 2 0.01
42 161 0.40
43 189 0.47
44 16 0.04
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (42 bp):
GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
Found at i:56304186 original size:85 final size:85
Alignment explanation
Indices: 56304084--56304601 Score: 564
Period size: 85 Copynumber: 6.2 Consensus size: 85
56304074 CAGATGTGCA
* * * *
56304084 GGAGCCTCGAACCCCATCGG-AACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGC
1 GGAGCCTCGAGCACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
*
56304148 ACCTCGGTGCTTGGATGTACG
65 ACCTTGGTGCTTGGATGTACG
* * * **
56304169 AGAGCCTCGACCACCATCGGTAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGATA
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
56304234 TCATGGTGCTTGTATGTACG
66 CCTTGGTGCTTGGATGTACG
* * *
56304254 GGAGCCTCGAGCACCATCGG-GACCTTGGTGGCTCGGATGTGCGGGAGCCTC-AGACACTATCGG
1 GGAGCCTCGAGCACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
56304317 CAACCTTGGTGC-----T-T---
64 C-ACCTTGGTGCTTGGATGTACG
* *
56304331 GGAGCCTCGAGCACCATCGG-CACCTTGGTGCTTTGATGTGCGGGAGCCTCG-GCCACCATCGGC
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGGC
56304394 AACCTTGGTGCTTGGATGTACG
65 -ACCTTGGTGCTTGGATGTACG
* * * * * *
56304416 AGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTGTATGTGCGGGAGCCTTGAACACCATCAGCA
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
56304480 CCTTGGTGGCTCGAATGTGCG
66 CCTTGGT-GCTTGGATGTACG
* * *
56304501 GGAGCCTC-AGACACCATCGGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCAAGCACCATCGGC
1 GGAGCCTCGAG-CACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
* *
56304565 ACCTTAGTGCTTGGATGTGCG
65 ACCTTGGTGCTTGGATGTACG
56304586 GGAGCCTCGAGCACCA
1 GGAGCCTCGAGCACCA
56304602 AAGCTAAAGC
Statistics
Matches: 363, Mismatches: 50, Indels: 40
0.80 0.11 0.09
Matches are distributed among these distances:
76 40 0.11
77 28 0.08
80 1 0.00
81 2 0.01
82 1 0.00
84 20 0.06
85 210 0.58
86 61 0.17
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (85 bp):
GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
CCTTGGTGCTTGGATGTACG
Found at i:56304304 original size:128 final size:129
Alignment explanation
Indices: 56304076--56304601 Score: 545
Period size: 128 Copynumber: 4.2 Consensus size: 129
56304066 TGGTGGATCA
* * * * * *
56304076 GATGTGCAGGAGCCTCGAACCCCATCGGA-ACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAG-C
1 GATGTGCGGGAGCCTCGAGCACCATC-GACACCTTGGT-GCTTGTATGTGCGGGAGCCTCGAGAC
* *
56304139 ACCATCGGC-ACCTCGGTGCTTGGATGTACGAGAGCCTCGACCACCATCGGTAACCTTGGTGCTT
64 ACCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTT
56304203 G
129 G
* * * * *
56304204 GATGTGCGAGAGCCTCGAGCACCATCGATATCATGGTGCTTGTATGTACGGGAGCCTCGAG-CAC
1 GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGTATGTGCGGGAGCCTCGAGACAC
* * * * * *
56304268 CATCGG-GACCTTGGTGGCTCGGATGTGCGGGAGCCTC-AGACACTATCGGCAACCTTGGTGC--
66 CATCGGCAACCTTGGT-GCTTGGATGTACGAGAGCCTCGAG-CACCATCGGTAACCTTGGTGCTT
56304329 -
129 G
* *
56304329 --T-T---GGAGCCTCGAGCACCATCGGCACCTTGGTGCTT-TGATGTGCGGGAGCCTCG-GCCA
1 GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGT-ATGTGCGGGAGCCTCGAGACA
*
56304386 CCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTG
65 CCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTG
* * * * *
56304450 TATGTGCGGGAGCCTTGAACACCATC-AGCACCTTGGTGGCTCGAATGTGCGGGAGCCTC-AGAC
1 GATGTGCGGGAGCCTCGAGCACCATCGA-CACCTTGGT-GCTTGTATGTGCGGGAGCCTCGAGAC
** * * * *
56304513 ACCATCGGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCAAGCACCATCGG-CACCTTAGTGCTT
64 ACCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTT
56304577 G
129 G
56304578 GATGTGCGGGAGCCTCGAGCACCA
1 GATGTGCGGGAGCCTCGAGCACCA
56304602 AAGCTAAAGC
Statistics
Matches: 330, Mismatches: 46, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
118 10 0.03
119 79 0.24
120 10 0.03
122 1 0.00
123 2 0.01
124 1 0.00
127 65 0.20
128 162 0.49
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (129 bp):
GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGTATGTGCGGGAGCCTCGAGACAC
CATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTG
Found at i:56304361 original size:33 final size:34
Alignment explanation
Indices: 56304297--56304363 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
56304287 CGGATGTGCG
*
56304297 GGAGCCTCAGACACTATCGGCAACCTTGGTGCTT
1 GGAGCCTCAGACACCATCGGCAACCTTGGTGCTT
56304331 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTT
1 GGAGCCTCAGA-CACCATCGGCAACCTTGGTGCTT
56304364 TGATGTGCGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.18, C:0.31, G:0.28, T:0.22
Consensus pattern (34 bp):
GGAGCCTCAGACACCATCGGCAACCTTGGTGCTT
Found at i:56304400 original size:76 final size:77
Alignment explanation
Indices: 56304254--56304409 Score: 251
Period size: 76 Copynumber: 2.0 Consensus size: 77
56304244 TGTATGTACG
* *
56304254 GGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACTATCGGCA
1 GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
56304319 ACCTTGGTGCTT
66 ACCTTGGTGCTT
** * *
56304331 GGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTTGATGTGCGGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
56304395 ACCTTGGTGCTT
66 ACCTTGGTGCTT
56304407 GGA
1 GGA
56304410 TGTACGAGAG
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
76 45 0.62
77 28 0.38
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.21
Consensus pattern (77 bp):
GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
ACCTTGGTGCTT
Found at i:56304401 original size:204 final size:207
Alignment explanation
Indices: 56304122--56304601 Score: 696
Period size: 204 Copynumber: 2.3 Consensus size: 207
56304112 TGGCTCGGAT
* * *
56304122 GTGTGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTGGATGTACGAGAGCCTCGACCACCATC
1 GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
* * * *
56304187 GGTAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGATATCATGGTGCTTGTATGTA
66 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
* * * * *
56304252 CGGGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACTATCGG
131 CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
56304317 CAACCTTGGTGC
196 CAACCTTGGTGC
* *
56304329 -T-T-GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTTGATGTGCGGGAGCCTCGGCCACCATC
1 GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
* * *
56304391 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGGTAACTTGGTGCTTGTATGTG
66 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
*
56304456 CGGGAGCCTTGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
131 CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
56304521 CAACCTTGGTGC
196 CAACCTTGGTGC
* * *
56304533 TTGGATGTGTGGGAGCCTCAAGCACCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGC
1 ------GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACC
56304598 ACCA
60 ACCA
56304602 AAGCTAAAGC
Statistics
Matches: 241, Mismatches: 23, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
204 184 0.76
205 1 0.00
206 1 0.00
211 1 0.00
212 1 0.00
213 53 0.22
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (207 bp):
GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
CAACCTTGGTGC
Found at i:56310103 original size:157 final size:156
Alignment explanation
Indices: 56309815--56310125 Score: 568
Period size: 157 Copynumber: 2.0 Consensus size: 156
56309805 TTTTGAAAAA
56309815 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
1 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
** *
56309880 TCAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGATGCGTATCTGG
66 AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTGG
*
56309945 GGCTGCCCATTCTGATTAGCAAAAGG
131 GGCTACCCATTCTGATTAGCAAAAGG
*
56309971 ATGTCTGGCCAAAATATTAACATGGAGAAGTCGATGATTTATTTCAGTCCCAGTACCCCCGGTCC
1 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
56310036 AAAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTG
66 -AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTG
56310101 GGGCTACCCATTCTGATTAGCAAAA
130 GGGCTACCCATTCTGATTAGCAAAA
56310126 AGAAGTCAAC
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 64 0.43
157 85 0.57
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (156 bp):
ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTGG
GGCTACCCATTCTGATTAGCAAAAGG
Found at i:56311955 original size:15 final size:15
Alignment explanation
Indices: 56311932--56311964 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
56311922 TAAAAAAAAA
*
56311932 AGCATGTCGCCTGGT
1 AGCAAGTCGCCTGGT
56311947 AGCAAGTCGCCTGGT
1 AGCAAGTCGCCTGGT
56311962 AGC
1 AGC
56311965 GAGTAGCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (15 bp):
AGCAAGTCGCCTGGT
Found at i:56317271 original size:43 final size:43
Alignment explanation
Indices: 56317156--56318127 Score: 571
Period size: 43 Copynumber: 22.9 Consensus size: 43
56317146 GGCAGCATAA
* * * *
56317156 GCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGC-ACCTTG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** *** * ** **
56317198 GTGC-TACACTGTGCGGGAGCCTCGAACACCATCGGCAATGTAG
1 GCCCTTGGTC-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * *
56317241 GCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGAC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * * *
56317283 GTGCTTGGAT-GTGTGGGAGCCTCGGACACAATCGGTAAACTAG
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
56317326 GCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCAACCTAG
1 GCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAG
* *
56317369 GCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG--ACC-AGG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCAACCTA-G
** * * * ** *
56317411 GGGCTCGAAT-GTGCGGGAGTATCGGACACCATCGGCAACCTAG
1 GCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
*
56317454 GCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
*** * * *
56317496 ATGCTCGGAT-GTGCG-GAAGCCTCGGAG-ACCATCGGCAAACTAA
1 GCCCTTGG-TCGTGCGAG-AGCCTCGG-GCACCATCGGCAACCTAG
* * *
56317539 GCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGC-ACCTCG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * *
56317581 GTGCTTGGAT-GTGCAAGAGCCTCAGGCACCATCGGCAACCTAT
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * * *
56317624 GCCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * *
56317666 GTACTTGGAT-GTGCGGGAACCTTGGACACCATCGGGAACCTAG
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * *
56317709 GCCCTTGGTTGTACAAGAGCCTCGAGCACCATCGGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * * *
56317751 GCGCTTGAAT-GTGCGGGAGCCTCGAGCACCATCGGCAA-CTTG
1 GCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * *
56317793 GTGCTT-GTATGTGTGGGAGCCTCGAGCACCATCGGC-ACCTTAG
1 GCCCTTGGT-CGTGCGAGAGCCTCGGGCACCATCGGCAACC-TAG
* * * * * * ** *
56317836 TG-GCTCGGAT-GTACGGGAGCCTCAGACACCATCAACAACCTTG
1 -GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * *
56317879 GTGCTT-AT-GTACGGGAGCCTCGGACACCATCGGCAAACTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * *
56317920 GCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCATCCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* *
56317963 GCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * * *
56318005 GTGCTCGGAT-GTG-TAGGAGCCTCAGACACCATCGGTAAACTAG
1 GCCCTTGG-TCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAG
* * **
56318048 GCCCTTGGTCGCGCGAGAGCCTCGGGCACCATCGACAAAATAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* *
56318091 GCCCTTGGTCGTGCGAGAGCCTCAGGCACCACCGGCA
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
56318128 CCTTGGTGGC
Statistics
Matches: 709, Mismatches: 175, Indels: 91
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 41 0.06
42 278 0.39
43 374 0.53
44 14 0.02
45 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (43 bp):
GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
Found at i:56317301 original size:85 final size:85
Alignment explanation
Indices: 56317171--56317369 Score: 240
Period size: 85 Copynumber: 2.3 Consensus size: 85
56317161 TGGTCGTGTG
* * *
56317171 GGAGCCTCGAGCACCATCGGCACCTTGGTGCTACACTGTGCGGGAGCCTCGAACACCATCGGCAA
1 GGAGCCTCGGGCACCATCGGCACCTAGGTGCTACACTGTGCGGGAGCCTCGAACACAATCGGCAA
**
56317236 TGTAGGCCCTTAGTCATGC-
66 ACTAGGCCCTTAGTCATGCA
* ** * * *
56317255 GAGAGCCTCGGGCACCATCGACACCTAGGTGCTTGGA-TGTGTGGGAGCCTCGGACACAATCGGT
1 G-GAGCCTCGGGCACCATCGGCACCTAGGTGC-TACACTGTGCGGGAGCCTCGAACACAATCGGC
* *
56317319 AAACTAGGCCCTTGGTCGTGCA
64 AAACTAGGCCCTTAGTCATGCA
56317341 GGAGCCTCGGGCACCATCGGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGG
56317370 CCCTTGGTCG
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
84 1 0.01
85 86 0.89
86 10 0.10
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGGCACCATCGGCACCTAGGTGCTACACTGTGCGGGAGCCTCGAACACAATCGGCAA
ACTAGGCCCTTAGTCATGCA
Found at i:56317387 original size:128 final size:126
Alignment explanation
Indices: 56317208--56318211 Score: 549
Period size: 128 Copynumber: 7.9 Consensus size: 126
56317198 GTGCTACACT
* ** ** * *
56317208 GTGCGGGAGCCTCGAACACCATCGGCAATGTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGAGAGCCTCGGGCACCAT
* * *
56317273 CGACACCTAGGTGCTTGGATGTGTGGGAGCCTCGGACACAATCGGTAAACTAGGCCCTTGGTC
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTC
* *
56317336 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGAGAGCCTCGGGCACCAT
* * * * **
56317401 C-AGGACC-AGGGGGCTCGAATGTGCGGGAGTATCGGACACCATCGGCAACCTAGGCCCTTGGTC
65 CGA-CACCTA-GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTC
* *** *
56317464 GTGC-GAGAGCCTTGGGCACCATCGGC-ACCTAGATGCTCGGATGTGCG-GAAGCCTCGGAG-AC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGAG-AGCCTCGG-GCAC
* * * ** * * * * * * **
56317525 CATCGGCAAACTAAGCCCTTGG-TCATGCGAGAGCCTTGGGCACCATCGGCACCTCGGTGCTTGG
62 CATCGAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG
56317589 AT-
125 -TC
* * * * *
56317591 GTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGAGAGCCTCGGGCACCAT
* * * * *
56317656 CGACACCTTGGTACTTGGATGTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGTT
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC-GGAACCTAGGCCCTTGGTC
* * * * * * *
56317719 GTACAAGAGCCTCGAGCACCATCGGC-ACCTAGGCGCTTGAATGTGCGGGAGCCTCGAGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTGTGCGAGAGCCTCGGGCACCAT
* * * * * * * *
56317783 CGGCAACTTGGTGCTTGTATGTGTGGGAGCCTC-GAGCACCATCGGCACCTTAGTG-GCTCGGAT
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGAACC-TAG-GCCCTTGG-T
56317846 -
126 C
* * * * ** * ** * * * *
56317846 GTACGGGAGCCTCAGACACCATCAACAACCTTGGTGCTT-ATGTACGGGAGCCTCGGACACCATC
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGTGCGAGAGCCTCGGGCACCATC
* * ** *
56317910 GGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCAGG-CACCATCGGCATCCTAGGCCCTTGGTC
66 GAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGG-AACCTAGGCCCTTGGTC
* * ** * * * *
56317973 GTGC-GAGAGCCTTGGGCACCATCAGC-ACCTAGGTGCTCGGATGTG-TAGGAGCCTCAGACACC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGA-GAGCCTCGGGCACC
* ** * * * * **
56318035 ATCGGTA-AACTAGGCCCTTGG-TCGCGCGAGAGCCTCGGGCACCATCGACAAAATAGGCCCTTG
63 ATC-G-ACACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCG-GAACCTAGGCCCTTG
56318098 GTC
124 GTC
* * * ** * * *
56318101 GTGC-GAGAGCCTCAGGCACCACCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TGTGCGAGAGCCTCGGGCACC
* * * * * *
56318164 ATTGACAACCTTGGTGTTTGGATGTGCGGCATCCTCGAACACCATCGG
63 ATCGAC-ACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG
56318212 TACTGTTGGA
Statistics
Matches: 686, Mismatches: 146, Indels: 88
0.75 0.16 0.10
Matches are distributed among these distances:
126 47 0.07
127 247 0.36
128 334 0.49
129 57 0.08
130 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (126 bp):
GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGTGCGAGAGCCTCGGGCACCATC
GACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTC
Found at i:56317441 original size:85 final size:84
Alignment explanation
Indices: 56317336--56318081 Score: 591
Period size: 85 Copynumber: 8.8 Consensus size: 84
56317326 GCCCTTGGTC
* * *
56317336 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* * *
56317401 CAGG-ACCAGGGGGCTCGAAT
66 C-GGCACCA-GGTGCTTGGAT
**
56317421 GTGCGGGAGTATCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTT-GGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCACCA
* *
56317485 TCGGCACCTAGATGCTCGGAT
65 TCGGCACC-AGGTGCTTGGAT
* * * * *
56317506 GTGCGGAAGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTT-GGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCACCA
*
56317570 TCGGCACCTCGGTGCTTGGAT
65 TCGGCACC-AGGTGCTTGGAT
** * * * * *
56317591 GTGCAAGAGCCTCAGG-CACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCA
* * *
56317655 TCGACACCTTGGTACTTGGAT
65 TCGGCACC-AGGTGCTTGGAT
* * * * * * * *
56317676 GTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGTTGTACAAGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* *
56317741 CGGCACCTAGGCGCTTGAAT
66 CGGCACC-AGGTGCTTGGAT
* ** * * * * *
56317761 GTGCGGGAGCCTC-GAGCACCATCGGCAA-CTTGGTGCTT-GTATGTGTGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGT-CGTGCGAGAGCTTCGGGCACC
*
56317823 ATCGGCACCTTA-GTGGCTCGGAT
64 ATCGGCACC--AGGT-GCTTGGAT
* * ** * ** * * * * *
56317846 GTACGGGAGCCTCAGACACCATCAACAACCTTGGTGCTT-AT-GTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* **
56317909 CGGCAAACTAGGCCCTTGG-T
66 CGGC--ACCAGGTGCTTGGAT
*
56317929 CGTGCGGGAGCCTCAGG-CACCATCGGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTT-GGGCAC
1 -GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCAC
* *
56317992 CATCAGCACCTAGGTGCTCGGAT
63 CATCGGCACC-AGGTGCTTGGAT
** * * * * *
56318015 GTGTAGGAGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
56318080 CG
66 CG
56318082 ACAAAATAGG
Statistics
Matches: 539, Mismatches: 98, Indels: 48
0.79 0.14 0.07
Matches are distributed among these distances:
83 3 0.01
84 103 0.19
85 391 0.73
86 40 0.07
87 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
CGGCACCAGGTGCTTGGAT
Found at i:56317519 original size:170 final size:169
Alignment explanation
Indices: 56317343--56318081 Score: 708
Period size: 170 Copynumber: 4.4 Consensus size: 169
56317333 GTCGTGCAGG
* * *
56317343 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG-AC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCAC
* * **
56317407 CAGGGGGCTCGAATGTGCGGGAGTATC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
65 CA-GGCGCTTGAATGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* * *
56317471 AGCCTTGGGCACCATCGGCACCTAGATGCTCGGATGTGCGGA
128 AGCCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGCGGA
* * * * *
56317513 AGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
* * * ** * * *
56317578 TCGGTGCTTGGATGTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAG
66 -AGGCGCTTGAATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG
* * * *
56317643 CCTCGAGCACCATCGACACCTTGGTACTTGGATGTGCGGGA
130 CCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGC-GGA
* * * * * *
56317684 A-CCTTGGACACCATCGGGAACCTAGGCCCTTGGTTGTACAAGAGCCTCGAGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
* ** * * *
56317748 TAGGCGCTTGAATGTGCGGGAGCCTC-GAGCACCATCGGCAA-CTTGGTGCTT-GTATGTGTGGG
66 -AGGCGCTTGAATGTGCGGGAGCCTCAG-GCACCATCGGCAACCTAGGCCCTTGGT-CGTGCGAG
* *
56317810 AGCCTCGAGCACCATCGGCACCTTA-GTGGCTCGGATGTACGGG
128 AGCCTCGAGCACCATCGGCACC-TAGGT-GCTCGGATGTGCGGA
* ** * ** * * * *
56317853 AGCCTCAGACACCATCAACAACCTTGGTGCTT-AT-GTACGGGAGCCTCGGACACCATCGGCAAA
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC--A
* * * *
56317916 CTAGGCCCTTG-GTCGTGCGGGAGCCTCAGGCACCATCGGCATCCTAGGCCCTTGGTCGTGCGAG
64 CCAGGCGCTTGAAT-GTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* * * *
56317980 AGCCTTGGGCACCATCAGCACCTAGGTGCTCGGATGTGTAGG-
128 AGCCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTG-CGGA
* * * *
56318022 AGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCACCATCG
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
56318082 ACAAAATAGG
Statistics
Matches: 457, Mismatches: 93, Indels: 37
0.78 0.16 0.06
Matches are distributed among these distances:
168 25 0.05
169 113 0.25
170 291 0.64
171 28 0.06
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (169 bp):
AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
AGGCGCTTGAATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
CTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGCGGA
Found at i:56317545 original size:213 final size:213
Alignment explanation
Indices: 56317156--56317617 Score: 558
Period size: 213 Copynumber: 2.2 Consensus size: 213
56317146 GGCAGCATAA
* ** * * *
56317156 GCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTACACTGTGCGGGAGCCTC
1 GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCACCAGGGGGCTACAATGTGCGGGAGCATC
** *
56317221 GAACACCATCGGCAATGTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGGTG
66 GAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGATG
* * * * * *
56317286 CTTGGATGTGTGGGAGCCTCGGACACAATCGGTAAACTAGGCCCTTGGTCGTGC-AGGAGCCTCG
131 CTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGA-GAGCCTCG
56317350 GGCACCATCGGCAACCTAG
195 GGCACCATCGGCAACCTAG
* * *
56317369 GCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG-ACCAGGGGGCT-CGAATGTGCGGGAGTA
1 GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC-GGCACCAGGGGGCTAC-AATGTGCGGGAGCA
* * * * *
56317432 TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGA
64 TCGAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGA
* * *
56317497 TGCTCGGATGTGCGGAAGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTT
129 TGCTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTC
*
56317562 GGGCACCATCGGC-ACCTCG
194 GGGCACCATCGGCAACCTAG
** **
56317581 GTGCTTGGAT-GTGCAAGAGCCTC-AGGCACCATCGGCA
1 GCCCTTGG-TCGTGTGAGAGCCTCGA-GCACCATCGGCA
56317618 ACCTATGCCC
Statistics
Matches: 210, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
211 2 0.01
212 31 0.15
213 174 0.83
214 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (213 bp):
GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCACCAGGGGGCTACAATGTGCGGGAGCATC
GAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGATG
CTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTCGG
GCACCATCGGCAACCTAG
Found at i:56317798 original size:212 final size:211
Alignment explanation
Indices: 56317523--56318084 Score: 616
Period size: 212 Copynumber: 2.7 Consensus size: 211
56317513 AGCCTCGGAG
** * * * *
56317523 ACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGCACCTCGGTGCTTG
1 ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
* *
56317588 GATGTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
66 GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
* * * *
56317653 CATCGACACCTTGGTACTTGGATGTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGT
131 CATCGACACCTTGGTACTT--ATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCTTGGT
*
56317718 TGTACAAGAGCCTC-GAGC
194 CGTACAAGAGCCTCAG-GC
* * * * * *
56317736 ACCATCGGCA-CCTAGGCGCTTGAAT-GTGCGGGAGCCTCGAGCACCATCGGCAACTTGGTGCTT
1 ACCATCGGCATCCTAGGCCCTTG-ATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTT
* * * * * *
56317799 GTATGTGTGGGAGCCTC-GAGCACCATCGGC-ACCTTAGTG-GCTCGGATGTACGGGAGCCTC-A
65 GGATGTGTAGGAGCCTCAG-GCACCATCGGCAACC-TA-TGCCCTTGGTTGTGCGGGAGCCTCGA
* * *
56317860 GACACCATCAACAACCTTGGTGCTTATGTACGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT
127 G-CACCATCGAC-ACCTTGGTACTTATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCT
* **
56317925 TGGTCGTGCGGGAGCCTCAGGC
190 TGGTCGTACAAGAGCCTCAGGC
* * *
56317947 ACCATCGGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAGGTGCTCG
1 ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
* * * * * * * *
56318012 GATGTGTAGGAGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCAC
66 GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
56318077 CATCGACA
131 CATCGACA
56318085 AAATAGGCCC
Statistics
Matches: 283, Mismatches: 53, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
211 70 0.25
212 185 0.65
213 28 0.10
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (211 bp):
ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
CATCGACACCTTGGTACTTATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
TACAAGAGCCTCAGGC
Found at i:56338717 original size:22 final size:22
Alignment explanation
Indices: 56338689--56338732 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
56338679 TTTTGAACCA
56338689 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
56338711 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
56338733 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:56344400 original size:43 final size:42
Alignment explanation
Indices: 56344353--56346424 Score: 493
Period size: 43 Copynumber: 48.6 Consensus size: 42
56344343 TCGGATGTCG
*
56344353 GGGAGCCTGGGACACCATCGGCAAACTAGGCCCTTGGTCGTAC
1 GGGAGCCTGGG-CACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * **
56344396 GGGAGCCTCGGGCACCATCGG-TACCTCGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * ** * * *
56344438 AGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
** * * * **
56344481 AAGAGCCTCGGCCACCATCGG-GACCTAGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * * * *
56344523 GAGAGCCTCGGACACCATCGACAAACGAAGCCTTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
56344566 GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * *
56344609 GAGAGCCTCAGGCACCATCGGC-ATCTGGGCGCTCGGATC-TGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * *
56344651 GGGAGCGTCGGACACCATCGGGAAACTAGGTCCTTGGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * *
56344694 GGGAGCCTCGAGCACCATCGG-AACCTCAGTG--CTATGAT-GTGT
1 GGGAGCCT-GGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGC
** * ** *
56344736 GGGAGCCTCAG-ACAATGTCGGCATCCTAGGCCCTTGGTCGAGC
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* ** * * ** *
56344779 GGGAGCCTTGAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGC
1 GGGAGCC-TGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * ** * * *
56344821 GAGAACCTCGGACACCATC-AAAAACCTAGGCCGTTGGTTGTGT
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGGTCGTGC
* * * *
56344864 GAGAGCCTCAGGTACCATCGGCAAACTAGGCCTTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
56344907 AGGAGTCTCGGGCA-CATTCGGC-ACCTTGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCA-TCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * *
56344949 GGAAGCCTTGGGCACCATCGACAAAAC-AGGCACTTCGTCGTGT
1 GGGAGCC-TGGGCACCATCGGC-AAACTAGGCCCTTGGTCGTGC
* * * ** *
56344992 GAGAGCCTCGGCCACCATC-G-AAACCTAAGTGCTTGGAT-GTCC
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGC
* * *
56345034 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * *
56345077 GAGAGCCTCGGGCACCATCGACTACCTAGGCTCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * * * *
56345120 GAGAGTCTTGGGCACCATCGGC-ACCTGGGCGCTCAGAT-GTAC
1 GGGAG-CCTGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
* * * * *
56345162 GGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGTTCATGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
56345205 GGGAGCCTCGGGCACCATCAGC-ACCTCGGTGCTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * * * * * *
56345247 AAGAGCAT-CGAACAAT-GTCACAATCCTCGGCCCTTGGTCGTGC
1 GGGAGCCTGGGCACCATCGGCA-AA--CTAGGCCCTTGGTCGTGC
* * * * * * **
56345290 TGAAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * ***
56345332 GGGAACCTCGGACACAATCAG-AAACCTAGGTGATTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGC
* * * *
56345375 GGAAGCCTCGGGCACTACCGGCAAACTAGGCCCTTGGTCATGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * *
56345418 GGGAGCCACGGGCACCATCGGCAGAA-TAGGCCTTTGGTCGTAC
1 GGGAGCC-TGGGCACCATCGGCA-AACTAGGCCCTTGGTCGTGC
* * * * * * * ** *
56345461 GAGAACCTCGGCCACCATTGG-GACCTTGGTGCTTGGAT-GTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * ** * *
56345503 GGGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * *
56345546 AGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** * *
56345589 GAGAGCCTCGGGCACCATCGGC-ACCTGGGTACTTAGAT-GTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTT-GGTCGTGC
* * * * *
56345631 GGGAGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
56345674 GGGAGCCTCGGGCACCATCGGC-ACCTCAGTG--CTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGC
* * * ** * **
56345716 GGGAGCCT-CGAACAATGTCGGCATCCTAGGCCTTTGGTCGTAT
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
56345759 GGGAGCCTCGAGCACCATCGAC-AACTTGGTGCTTGGAT-GTGA
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * * *
56345801 GGGAACCTCGGACACCATCGACAACCTAGGCCCTTGGTCTTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
56345844 GAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGC
1 G-GGAGCC-TGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
56345887 GAGAGCCTCGGGCACCATCAGC-ACCTCGGTACTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * *
56345929 GGGAGCCTCGAGCACCATCGGCAAAATAGGCCTTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
56345972 GAGAGCCTCGGCCACCATCAGG--ACCTAGGTGCTCGGAT-GTGC
1 GGGAGCCT-GGGCACCATC-GGCAAACTAGGCCCTTGG-TCGTGC
* * * *
56346014 GAGAGGCTCGGACACCATCAGCAAACTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
56346057 GGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * ** * *
56346100 -GAAGGCTTCGGGCACCATCGAC-ACCTGGGTGCTCAGAT-GTGC
1 GGGA-GCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * * *
56346142 GGGAGTGTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * ** *
56346185 GGGAACCTCAGGCACCATCGG-TACCTCGGTGCTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * ** *
56346227 GGGAGCCTCAG-ACAATGTCGGCATCCTAGGCCCTTGGTCGTGT
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
56346270 GGGAGCCTCGAGTACCATCGAC-ACCGT-GGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAAC-TAGGCCCTTGG-TCGTGC
* * * * *
56346312 AGGAACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * ** *
56346355 GAGAGCCTCGGACACCATCGG-TACCTAGGTACTCGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* *
56346397 GGGAGCCTCGGACACCATCAGCAAACTA
1 GGGAGCCT-GGGCACCATCGGCAAACTA
56346425 AGGTCGGGGT
Statistics
Matches: 1472, Mismatches: 442, Indels: 230
0.69 0.21 0.11
Matches are distributed among these distances:
39 1 0.00
40 18 0.01
41 13 0.01
42 573 0.39
43 819 0.56
44 31 0.02
45 15 0.01
46 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (42 bp):
GGGAGCCTGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
Found at i:56344457 original size:85 final size:85
Alignment explanation
Indices: 56344313--56346424 Score: 520
Period size: 85 Copynumber: 24.8 Consensus size: 85
56344303 AACTTAACAA
* ** * * *
56344313 GAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGT-CGGGGAGCCT-GGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGC-GAGAGCCTCGGG-CACCATCGACA
* * *
56344376 AACTAGGCCCTTGGTCGTACGG
64 AACTAGGCCATTGGTTGTGCGG
* * * *
56344398 GAGCCTCGGGCACCATCGGTACCTCGGTGCTTGGATGTGC-AGGTGCCTCGGGCACCATCGATAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACAA
* **
56344462 AATAGGCCATTGGTTGTGCAA
65 ACTAGGCCATTGGTTGTGCGG
* * * *
56344483 GAGCCTCGGCCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* * *
56344548 CGAAGCCTTTGGTTGTGCGG
66 CTAGGCCATTGGTTGTGCGG
* * *
56344568 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGGC-
1 GAGCCTCGGGCACCATCGGT-ACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * * *
56344631 ATCTGGGCGC-TCGGATCTGCGG
64 AACTAGGC-CATTGGTTGTGCGG
* * * * * * * *
56344653 GAGCGTCGGACACCATCGGGAAACTAGGTC-CTTGG-TCGTGTGGGAGCCTCGAGCACCATCG-G
1 GAGCCTCGGGCACCATC-GGTACCTAGG-CGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGAC
* * * *
56344715 AACCTCAGTGCTA-T-GATGTGTGG
63 AAACT-AG-GCCATTGGTTGTGCGG
* * *** * * * * * * *
56344738 GAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGG-TCGAGCGGGAGCCTTGAGCACCATCAAC-
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * *
56344801 ACCTTGGTGC-TTGGATT-TGCGA
64 AACTAGG-CCATTGG-TTGTGCGG
* * *** * * * * *
56344823 GAACCTCGGACACCATCAAAAACCTAGGC-CGTTGGTTGTGTGAGAGCCTCAGGTACCATCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGC-TTGGATGTGCGAGAGCCTCGGGCACCATCGACA
* * *
56344887 AACTAGGCCTTTGGTCGTGCAG
64 AACTAGGCCATTGGTTGTGCGG
* * * * *
56344909 GAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCG-GAAGCCTTGGGCACCATCGACA
1 GAGCCTCGGGCACCA-TCGGTACCTAGGCGCTTGGATGTGCGAG-AGCCTCGGGCACCATCGAC-
* * * *
56344972 AAAC-AGG-CACTTCGTCGTGTGA
63 AAACTAGGCCA-TTGGTTGTGCGG
* ** * * * * * *
56344994 GAGCCTCGGCCACCATCGAAACCTAAGTGCTTGGATGTCCGGGAGCCTCGGACACCATCGGCAAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* * * * *
56345059 CTAGGCCCTTCGTCGTGTGA
66 CTAGGCCATTGGTTGTGCGG
* * * * *
56345079 GAGCCTCGGGCACCATCGACTACCTAGGCTCTTGG-TCGTGCGAGAGTCTTGGGCACCATCGGC-
1 GAGCCTCGGGCACCATCG-GTACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * ** * *
56345142 ACCTGGGCGC-TCAGATGTACGG
64 AACTAGGC-CATTGGTTGTGCGG
* * * * * * * * *
56345164 GAGCATCAGACACCATCGGCAAACTAGGCCCTT-GTTCATGCGGGAGCCTCGGGCACCATC-AGC
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGA-C
* * * * **
56345227 -ACCTCGGTGC-TAT-GATGTGCAA
63 AAACTAGG-CCAT-TGGTTGTGCGG
* ** *** *** * * *
56345249 GAGCATCGAACAATGTCACAATCCTCGGCCCTTGG-TCGTGCTGA-AGCCTCGAGCACCATCGAC
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGCTTGGAT-GTGC-GAGAGCCTCGGGCACCATCGAC
* * * *
56345312 -ACCTTGGTGC-TTGGATGTGCGG
63 AAACTAGG-CCATTGGTTGTGCGG
* * * ** * * * * *
56345334 GAACCTCGGACACAATCAGAAACCTAGGTGATTGGATGTGCG-GAAGCCTCGGGCACTACCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGATGTGCGAG-AGCCTCGGGCACCATCGACA
* **
56345398 AACTAGGCCCTTGGTCATGCGG
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * * * *
56345420 GAGCCACGGGCACCATCGGCAGAATAGGC-CTTTGG-TCGTACGAGAACCTCGGCCACCATTG-G
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGC-TTGGAT-GTGCGAGAGCCTCGGGCACCATCGAC
* * * * * *
56345482 GACCTTGGTGC-TTGGATGTACGG
63 AAACTAGG-CCATTGGTTGTGCGG
* * *** * * * * * **
56345505 GAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGC-AGGAGCCTCGGGCACTATCGGTA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACA
* * * *
56345569 ACCTAGGCCCTTGGTCGTGCGA
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * * * *
56345591 GAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGGAGCGTCGGACACCATCAGA-AA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATC-GACAA
* * *
56345655 ACTAGGCCCTTGGTCGTGTGG
65 ACTAGGCCATTGGTTGTGCGG
* * * ** *** *
56345676 GAGCCTCGGGCACCATCGGCACCTCA-GTGCTAT-GATGTGCGGGAGCCTCGAACAATGTCGGCA
1 GAGCCTCGGGCACCATCGGTACCT-AGGCGCT-TGGATGTGCGAGAGCCTCGGGCACCATCGACA
** * * **
56345739 TCCTAGGCCTTTGGTCGTATGG
64 AACTAGGCCATTGGTTGTGCGG
* ** * * * * * * * *
56345761 GAGCCTCGAGCACCATCGACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAAC
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* *
56345826 CTAGGCCCTTGGTCT-TACGAG
66 CTAGGCCATTGGT-TGTGCG-G
* * * * * *
56345847 G-GCCTTGGGCACCATCGGCAAACTATGCCCTTGG-TCATGCGAGAGCCTCGGGCACCATC-AGC
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGA-C
* * * *
56345909 -ACCTCGG-TACTTGGATGTGCGG
63 AAACTAGGCCA-TTGGTTGTGCGG
* * ** * * **
56345931 GAGCCTCGAGCACCATCGGCAAAATAGGC-CTTTGGTTGTGCGAGAGCCTCGGCCACCATC-AGG
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGC-TTGGATGTGCGAGAGCCTCGGGCACCATCGACA
* * * * *
56345994 ACCTAGGTGC-TCGGATGTGCGA
64 AACTAGG-CCATTGGTTGTGCGG
* * ** * * * *
56346016 GAGGCTCGGACACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * *
56346080 ACCGAGGCCCTTGGTCGTGC-G
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * ** * ** * * *
56346101 AAGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCAA
1 GA-GCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAA
* * *
56346166 ACTAGGCCCTTGGTCGTACGG
65 ACTAGGCCATTGGTTGTGCGG
* * * * * * * *** * *
56346187 GAACCTCAGGCACCATCGGTACCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACAATGTCGGCAT
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCT-TGGATGTGCGAGAGCCTCGGGCACCATCGACAA
* * * *
56346251 CCTAGGCCCTTGGTCGTGTGG
65 ACTAGGCCATTGGTTGTGCGG
* * ** * * * *
56346272 GAGCCTCGAGTACCATCGACACCGT-GGTGCTTGGATGTGC-AGGAACCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGTACC-TAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACA
* * * * *
56346335 ACCTAGGCCCTTAGTCGTGCGA
64 AACTAGGCCATTGGTTGTGCGG
* ** * * *
56346357 GAGCCTCGGACACCATCGGTACCTAGGTACTCGGATGTGCGGGAGCCTCGGACACCATC-AGCAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGA-CAA
56346421 ACTA
65 ACTA
56346425 AGGTCGGGGT
Statistics
Matches: 1521, Mismatches: 406, Indels: 200
0.72 0.19 0.09
Matches are distributed among these distances:
83 1 0.00
84 28 0.02
85 1221 0.80
86 268 0.18
87 3 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (85 bp):
GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
CTAGGCCATTGGTTGTGCGG
Found at i:56344714 original size:128 final size:128
Alignment explanation
Indices: 56344365--56346383 Score: 638
Period size: 128 Copynumber: 15.8 Consensus size: 128
56344355 GAGCCTGGGA
* * * * * * * *
56344365 CACCATCGGCAAACTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGG-TACCTCGGTGC
1 CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCC
* * ** * * *
56344428 TTGGAT-GTGCAGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCAAGAGCCTC-G
64 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAG
56344491 G
128 G
* * * * * * *
56344492 CCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAAACGAAG-CCT
1 -CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCC-
* *
56344556 TTGGTTGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
64 TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* * * * *
56344621 CACCATCGGCATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAAACTAGGTCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * * * * *
56344686 GGTCGTGTGGGAGCCTCGAGCACCATCG-GAACCTCAGTG--CTATGAT-GTGTGGGAGCCTCAG
66 GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCT-AG-GCCCT-TGGTCGTGCGAGAGCCTCAG
*
56344747 A
128 G
*** * * * ** * * *
56344748 CAATGTCGGCATCCTAGGCCCTTGG-TCGAGCGGGAGCCT-TGAGCACCATCAAC-ACCTTGGTG
1 CACCATCGGCA-CCTAGGCGCTTGGATC-TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGTC
* * * * * * * * *
56344810 CTTGGAT-TTGCGAGAACCTCGGACACCATCAAAAACCTAGGCCGTTGGTTGTGTGAGAGCCTCA
63 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCA
56344874 GG
127 GG
* * * * * * *
56344876 TACCATCGGCAAACTAGGC-CTTTGG-TCGTGCAGGAGTCTCGGGCA-CATTCGGC-ACCTTGGT
1 CACCATCGGC-ACCTAGGCGC-TTGGATC-TGCGGGAGCCTCGGACACCA-TCGGCAAACTAGGT
* * * * * * * *
56344937 GCTTGGAT-GTGCGGAAGCCTTGGGCACCATCGACAAAAC-AGGCACTTCGTCGTGTGAGAGCCT
62 CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGA-TAACCTAGGCCCTTGGTCGTGCGAGAGCCT
56345000 C-GG
125 CAGG
** * * * * *
56345003 CCACCATCGAAACCTAAGTGCTTGGATGTCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT
1 -CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* * * * * **
56345068 TCGTCGTGTGAGAGCCTCGGGCACCATCGACT-ACCTAGGCTCTTGGTCGTGCGAGAGTCTTGGG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGA-TAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* ** * * * * *
56345132 CACCATCGGCACCTGGGCGCTCAGATGTACGGGAGCATCAGACACCATCGGCAAACTAGGCCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * ** * ** * * *
56345197 GTTCATGCGGGAGCCTCGGGCACCATC-AGCACCTCGGTGCTATGAT-GTGCAAGAGCATC--G
66 GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCAGG
* * * * * * * * * *
56345257 AACAAT-GTCACAATCCTCGGCCCTTGG-TCGTGCTGAAGCCTC-GAGCACCATCGAC-ACCTTG
1 CACCATCG--GC-A-CCTAGGCGCTTGGATC-TGCGGGAGCCTCGGA-CACCATCGGCAAACTAG
* * * * ***
56345318 GTGCTTGGAT-GTGCGGGAACCTCGGACACAATCAGA-AACCTAGGTGATTGGAT-GTGCG-GAA
60 GTCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC-GATAACCTAGGCCCTTGG-TCGTGCGAG-A
*
56345379 GCCTCGGG
121 GCCTCAGG
* * * * * *
56345387 CACTACCGGCAAACTAGGCCCTTGG-TCATGCGGGAGCCACGGGCACCATCGGCAGAA-TAGG-C
1 CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCA-AACTAGGTC
* * * * * ** * ** * *
56345449 CTTTGGTCGTACGAGAACCTCGGCCACCATTG-GGACCTTGGTGCTTGGAT-GTACGGGAGCCTC
63 C-TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC
*
56345512 AGA
126 AGG
** * * * * * * * * * * *
56345515 CACCATCAACAAACTATGCCCTTGGTTGTGCAGGAGCCTCGGGCACTATCGGTAACCTAGGCCCT
1 CACCATCGGC-ACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* ** * ** * * * *
56345580 TGGTCGTGCGAGAGCCTCGGGCACCATCG-GCACCTGGGTACTTAGAT-GTGTGGGAGCGTC-GG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCAGG
** * * * * *
56345642 ACACCATCAGAAAACTAGGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGC-ACCTCA-GT
1 -CACCATC-GGCACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACT-AGGT
* * ** *** ** * * ** *
56345704 GCTATGAT-GTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGGGAGCCTC
62 CCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTC
56345768 -GAG
126 AG-G
* * * * * * * * * *
56345771 CACCATCGACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAACCTAGGCCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * * ** * * * *
56345836 GGTCTTACGAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGG
66 GGTCGTGCG-GGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* * ** * *
56345899 CACCATCAGCACCTCGGTACTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCAAAATAGG-CCT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGTCC-
* * * ** ** * *
56345962 TTGGTTGTGCGAGAGCCTCGGCCACCATC-AGGACCTAGGTGCTCGGAT-GTGCGAGAGGCTC-G
64 TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAG
56346024 G
128 G
* * * * * * *
56346025 ACACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCC
1 -CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACTAGGTC
* * * * ** * * * **
56346089 CTTGGTCGTGC-GAAGGCTTCGGGCACCATCGA-CACCTGGGTGCTCAGAT-GTGCGGGAGTGTC
63 CTTGGTCGTGCGGGA-GCCTCGGGCACCATCGATAACCTAGGCCCT-TGGTCGTGCGAGAGCCTC
56346151 -GG
126 AGG
* * * * * * * *
56346153 ACACTATCGGCAAACTAGGCCCTTGG-TCGTACGGGAACCTCAGG-CACCATCGG-TACCTCGGT
1 -CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGT
* * * * *** ** * * *
56346215 GCTATGAT-GTGCGGGAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGTGTGGGAGCCTC
62 CCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTC
56346279 -GAG
126 AG-G
* * * * * * * *
56346282 TACCATCGACACCGT-GGTGCTTGGATGTGCAGGAACCTCGGACACCATCGGCAACCTAGGCCCT
1 CACCATCGGCACC-TAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* * * *
56346346 TAGTCGTGCGAGAGCCTCGGACACCATCGGT-ACCTAGG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGG
56346384 TACTCGGATG
Statistics
Matches: 1422, Mismatches: 375, Indels: 189
0.72 0.19 0.10
Matches are distributed among these distances:
124 1 0.00
125 5 0.00
126 6 0.00
127 350 0.25
128 993 0.70
129 61 0.04
130 5 0.00
131 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (128 bp):
CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
Found at i:56344860 original size:298 final size:298
Alignment explanation
Indices: 56344312--56346383 Score: 1452
Period size: 298 Copynumber: 7.0 Consensus size: 298
56344302 GAACTTAACA
*
56344312 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGT-CGGGGAGCCTGGGACACCATCGGCA
1 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGC-GGGAGCCTCGGACACCATCGGCA
* * * *
56344376 AACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTTGGATGTGCAGG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGG
* * * ** * * * ** * *
56344441 TGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCAAGAGCCTCGGCCACCATCGGGACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
56344506 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC-GACAAACGAAGCCTTTGGTTGTGCGGGA
195 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGA-AACCTAGGCCTTTGGTCGTGCGGGA
*
56344570 GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
259 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
56344610 AGAGCCTCAGGCACCATCGGCATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAA
1 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * *
56344675 ACTAGGTCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGAACCTCAGTGCTAT-GATGTGTGGG
66 ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCT-TGGATGTGCGGG
* ** ** * * * **
56344739 AGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGAGCGGGAGCCTTGAGCACCATCAACACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * * * * *
56344804 TTGGTGCTTGGATTTGCGAGAACCTCGGACACCATCAAAAACCTAGGCCGTTGGTTGTGTGAGAG
195 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGGAG
* * * *
56344869 CCTCAGGTACCATCGGCAAACTAGGCCTTTGGTCGTGC-
260 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * * * * * *
56344907 AGGAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCGGAAGCCTTGGGCACCATCGAC
1 A-GAGCCTCAGGCACCA-TCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGC
* * * * * ** *
56344971 AAAAC-AGGCACTTCGTCGTGTGAGAGCCTCG-GCCACCATCGAAACCTAAGTGCTTGGATGTCC
64 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGAACCTCGGTGCTTGGATGTGC
* * * * *
56345034 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTGTGAGAGCCTCGGGCACCATCGAC
127 GGGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * * ** * ** *
56345099 TACCTAGGCT-CTTGG-TCGTGCGAGAGTCTTGGGCACCATC-GGCACCTGGGCGCTCAGAT-GT
192 -ACCTAGG-TGCTTGGAT-GTGCGAGAGCCTCGGACACCATCAGAAACCTAGGC-CTTTGGTCGT
* * * * * * *
56345160 ACGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGTTCATGCG
253 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * ** ** * * *
56345206 GGAGCCTCGGGCACCATC-AGCACCTCGGTGCTATGATGTGCAAGAGCATC-GA-ACAAT-GTCA
1 AGAGCCTCAGGCACCATCGA-CACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * *
56345267 CAATCCTCGGCCCTTGGTCGTGCTGAAGCCTCGAGCACCATC-GACACCTTGGTGCTTGGATGTG
65 -AA--CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGA-ACCTCGGTGCTTGGATGTG
* * *** * * *
56345331 CGGGAACCTCGGAC-ACAATCAG-AAACCTAGGTGATTGGAT-GTGCGGAAGCCTCGGGCACTAC
126 CGGGAGCCTCGGACAAC-ATCGGCAAA-CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* ** * * * * *
56345393 CGGCAAACTAGGCCCTTGG-TCATGCGGGAGCCACGGGCACCATCGGCAGAA--TAGGCCTTTGG
188 CGGC-ACCTAGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCATCAG-A-AACCTAGGCCTTTGG
* * * * * * * ** *
56345455 TCGTACGAGAACCTCGGCCACCATTGG-GACCTTGGTGCTTGGAT-GTACG
249 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * * * * * *
56345504 GGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGCAGGAGCCTCGGGCACTATCGGTA
1 AGAGCCTCAGGCACCATCGAC-ACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * * * * * *
56345569 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGG
* * * * *
56345634 AGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * *** * * * **
56345699 TCA-GTGCTAT-GATGTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGGG
195 T-AGGTGCT-TGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGG
* * * ** *
56345762 AGCCTCGAGCACCATCGACAA-CTTGGTGCTTGGAT-GTGAG
258 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * *
56345802 GGAACCTC-GGACACCATCGACAACCTAGGCCCTTGG-TCTTACGAGG-GCCTTGGGCACCATCG
1 AGAGCCTCAGG-CACCATCGAC-ACCTAGGCGCTCGGAT-GTGCG-GGAGCCTCGGACACCATCG
* * * * * * *
56345864 GCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGCACCTCGGTACTTGGATGTGC
62 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGC
* * * * * *
56345929 GGGAGCCTC-GAGCACCATCGGCAAAATAGGCCTTTGGTTGTGCGAGAGCCTCGGCCACCATCAG
127 GGGAGCCTCGGA-CAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-G
* * *
56345993 G-ACCTAGGTGCTCGGATGTGCGAGAGGCTCGGACACCATCAGCAAA-CTAGGCCCTTGGTCGTG
190 GCACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAG-AAACCTAGGCCTTTGGTCGTG
*
56346056 CGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGCG
254 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * ** *
56346101 A-AGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCA
1 AGA-GCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * *
56346165 AACTAGGCCCTTGGTCGTACGGGAACCTC-AGGCACCATCGGTACCTCGGTGCTAT-GATGTGCG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGGAACCTCGGTGCT-TGGATGTGCG
* ** ** * * * *
56346228 GGAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGTACCATCGACA
128 GGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
56346293 CCGT-GGTGCTTGGATGTGC-AGGAACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCG
193 CC-TAGGTGCTTGGATGTGCGA-GAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCG
* * *
56346356 AGAGCCTCGGACACCATCGG-TACCTAGG
256 GGAGCCTCGGGCACCATCGGCAACCTAGG
56346384 TACTCGGATG
Statistics
Matches: 1379, Mismatches: 329, Indels: 133
0.75 0.18 0.07
Matches are distributed among these distances:
294 1 0.00
295 4 0.00
296 5 0.00
297 29 0.02
298 1101 0.80
299 222 0.16
300 9 0.01
301 6 0.00
302 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (298 bp):
AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGGA
GCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
AGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:56345767 original size:170 final size:168
Alignment explanation
Indices: 56345570--56346415 Score: 602
Period size: 170 Copynumber: 5.0 Consensus size: 168
56345560 CTATCGGTAA
* * * * * *
56345570 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGGA
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
* * *
56345635 GCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCT
66 GCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
**
56345700 CAGTGCTATGATGTGCGGGAGCCTCGAACAATGTCGGCAT
131 -AGTGCT-TGATGTGCGGGAGCCTCGAACAACATCGGCAT
* * * * * *
56345740 CCTAGGCCTTTGGTCGTATGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGGATGTGAGGGA
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
* * * *
56345805 ACCTCGGACACCATC-GACAACCTAGGCCCTTGGTCTTACGAGG-GCCTTGGGCACCATCGGCAA
66 GCCTCGGACACCATCAGA-AACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGC-A
* * * * ** * *
56345868 ACTA-TGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGCA-
128 CCTAGTG--CTTGAT-GTGCGGGAGCCTCGAACAACATCGGCAT
* ** * * ** * * * *
56345910 CCTCGGTACTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGCAAAATAGG-CCTTTGGTTGTGCG
1 CCTAGGCCCTTGG-TCGTGTGGGAGCCTCGAGCACCATCGAC-ACCTGGGTGC-TTAGATGTGCG
* * * ** * * * * *
56345973 AGAGCCTCGGCCACCATCAG-GACCTAGGTGCTCGGAT-GTGCGAGAGGCTCGGACACCATCAGC
63 GGAGCCTCGGACACCATCAGAAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* * ** * *
56346036 AAACTAG-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
127 -ACCTAGTG--CTTGAT-GTGCGGGAGCCTCGAACAACATCGGCAT
* * * * * *
56346081 CCGAGGCCCTTGGTCGTG-CGAAGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGG
1 CCTAGGCCCTTGGTCGTGTGGGA-GCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGG
** * * * * * *
56346145 AGTGTCGGACACTATCGGCAAA-CTAGGCCCTTGGTCGTACGGGAACCTCAGGCACCATCGGTAC
65 AGCCTCGGACACCATCAG-AAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* **
56346209 CTCGGTGCTATGATGTGCGGGAGCCTC-AGACAATGTCGGCAT
129 CT-AGTGCT-TGATGTGCGGGAGCCTCGA-ACAACATCGGCAT
* * *
56346251 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGTACCATCGACACC-GTGGTGCTTGGATGTGCAGG
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTG-GGTGCTTAGATGTGCGGG
* * * * * * *
56346315 AACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTCGGACACCATCGGTACC
65 AGCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
56346380 TAGGTACTCGGATGTGCGGGAGCCTCGGACACCATC
130 TA-GTGCT-TGATGTGCGGGAGCCTCGAACAACATC
56346416 AGCAAACTAA
Statistics
Matches: 519, Mismatches: 128, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
169 8 0.02
170 390 0.75
171 118 0.23
172 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (168 bp):
CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
GCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
AGTGCTTGATGTGCGGGAGCCTCGAACAACATCGGCAT
Found at i:56346258 original size:213 final size:209
Alignment explanation
Indices: 56344353--56346289 Score: 1025
Period size: 213 Copynumber: 9.1 Consensus size: 209
56344343 TCGGATGTCG
* * *
56344353 GGGAGCCT-GGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGG-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * * ** * * * * *
56344417 TACCTCGGTGCTTGGATGTGCAGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCA
65 CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* * *
56344482 AGAGCCTCGGCCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAA
129 GGAGCCTCGG-CACCATC-GGACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * *
56344547 ACGAAGCCTTTGGTTGTGC
191 CCTAGGCCCTTGGTCGTGC
* * * *
56344566 GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* * * * * * * * **
56344631 ATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAAACTAGGTCC-TTGGTCGTGTG
66 ACCTCGGTGCT-AGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGG-CCTTTGGTCGTACG
* * ***
56344695 GGAGCCTCGAGCACCATCGGAACCTCA-GTGCTATGATGTGTGGGAGCCTCAGACAATGTCGGCA
129 GGAGCCTCG-GCACCATCGG-ACCT-AGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGCA
* *
56344759 TCCTAGGCCCTTGGTCGAGC
190 ACCTAGGCCCTTGGTCGTGC
* * ** * * ** * * * *
56344779 GGGAGCCTTGAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGCGAGAACCTCGGACACCATCAA
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATC-G
* * * * * * * *
56344842 AAACCTAGGCCGTTGGTTGTGTGAGAGCCTCAGGTAC-C-ATCGGCAAACTAGGCCTTTGGTCGT
64 ACACCTCGG-TGCTAGATGTGCGGGAGCCTC-GG-ACACTATCGGCAAACTAGGCCTTTGGTCGT
* * * * * * *
56344905 GCAGGAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCGGAAGCCTTGGGCACCATCG
126 ACGGGAGCCTC-GGCACCA-TCGG-ACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCG
* * * * *
56344969 ACAAAAC-AGGCACTTCGTCGTGT
187 GC-AACCTAGGCCCTTGGTCGTGC
* * * ** * * *
56344992 GAGAGCCTCGGCCACCATC-G-AAACCTAAGTGCTTGGAT-GTCCGGGAGCCTCGGACACCATCG
1 GGGAGCCTCGGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCG
* * * ** * * * * * * * *
56345054 GCAAACTAGGCCCTTCG-TCGTGTGAGAGCCTCGGGCACCATCGACTACCTAGG-CTCTTGGTCG
64 AC-ACCTCGGTGC-TAGAT-GTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCT-TTGGTCG
* * * * * * * * * *
56345117 TGCGAGAGTCTTGGGCACCATCGGCACCTGGGCGCTCAGATGTACGGGAGCATCAGACACCATCG
125 TACGGGAG-CCTCGGCACCATCGG-ACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCG
* * *
56345182 GCAAACTAGGCCCTTGTTCATGC
187 GCAACCTAGGCCCTTGGTCGTGC
* * * ** * * * ** ***
56345205 GGGAGCCTCGGGCACCATCAGC-ACCTCGGTGCTATGAT-GTGCAAGAGCATCGAACAATGTC-A
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGA
** * * * * * * * * *
56345267 CAATCCTCGGCCCTTGGTCGTGCTGAAGCCTC-GAGCACCATCGAC-ACCTTGGTGC-TTGGAT-
65 C-A-CCTCGGTGCTAGAT-GTGCGGGAGCCTCGGA-CACTATCGGCAAACTAGG-CCTTTGG-TC
* * * * * * * * *
56345328 GTGCGGGAACCTCGGACACAATCAGAAACCTAGGTGATTGGATGTGCGGAAGCCTCGGGCACTAC
124 GTACGGGAGCCTCGG-CACCATC-G-GACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCAT
* *
56345393 CGGCAAACTAGGCCCTTGGTCATGC
185 CGGCAACCTAGGCCCTTGGTCGTGC
* * * * * * *
56345418 GGGAGCCACGGGCACCATCGGCAGAA-TAGGCCTTTGGTCGTACGAGAACCTCGGCCACCATTGG
1 GGGAGCCTCGGGCACCATCGGCA-AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * * ** * * * * *
56345482 GACCTTGGTGCTTGGATGTACGGGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGCA
65 CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* ** * * *
56345547 GGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-
129 GGAGCCTC-GGCACCATCGG--ACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGACACCATCGGCA
* ** * *
56345611 ACCTGGGTACTTAGAT-GTGT
190 ACCTAGGCCCTT-GGTCGTGC
* * * * * * *
56345631 GGGAGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* * * * ** *
56345696 ACCTCAGTGCTATGATGTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGG
66 ACCTCGGTGCTA-GATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACGG
* * * *
56345761 GAGCCTCGAGCACCATC-GACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAA
130 GAGCCTCG-GCACCATCGGAC--CTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAA
* *
56345825 CCTAGGCCCTTGGTCTTAC
191 CCTAGGCCCTTGGTCGTGC
* * *
56345844 GAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGGCACCATC-A
1 G-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * *
56345907 GCACCTCGGTACTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCAAAATAGGCCTTTGGTTGTG
65 -CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGA-CACTATCGGCAAACTAGGCCTTTGGTCGTA
* * * * *
56345971 CGAGAGCCTCGGCCACCATCAGGACCTAGGTGCTCGGATGTGCGAGAGGCTCGGACACCATCAGC
127 CGGGAGCCTCGG-CACCATC-GGACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGC
*
56346036 AAACTAGGCCCTTGGTCGTGC
189 AACCTAGGCCCTTGGTCGTGC
* * *
56346057 GGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGCGA-AGGCTTCGGGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGA-GCCTCGGGCACCATCGA
* ** *
56346121 CACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTACG
65 CACCTCGGTGCT-AGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* * * *** *
56346186 GGAACCTCAGGCACCATCGGTACCTCGGTGCTATGATGTGCGGGAGCCTCAGACAATGTCGGCAT
129 GGAGCCTC-GGCACCATCGG-ACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGCAA
*
56346251 CCTAGGCCCTTGGTCGTGT
191 CCTAGGCCCTTGGTCGTGC
* *
56346270 GGGAGCCTCGAGTACCATCG
1 GGGAGCCTCGGGCACCATCG
56346290 ACACCGTGGT
Statistics
Matches: 1311, Mismatches: 333, Indels: 160
0.73 0.18 0.09
Matches are distributed among these distances:
210 2 0.00
211 5 0.00
212 122 0.09
213 1060 0.81
214 114 0.09
215 8 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (209 bp):
GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
ACCTCGGTGCTAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACGGG
AGCCTCGGCACCATCGGACCTAGGTGCTTGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
GCCCTTGGTCGTGC
Found at i:56351657 original size:43 final size:43
Alignment explanation
Indices: 56351573--56351661 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 43
56351563 CTCGAGCAGT
* * **
56351573 ATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTTAAGCACC
1 ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
* * *
56351616 ATCGGCATCTTGGAGCCTCGGATGTGCGGGAGCCCCGAGCACC
1 ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
56351659 ATC
1 ATC
56351662 AGAAACTTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (43 bp):
ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
Found at i:56352200 original size:43 final size:43
Alignment explanation
Indices: 56352132--56352467 Score: 290
Period size: 43 Copynumber: 7.9 Consensus size: 43
56352122 AGCCTCCAGC
* *
56352132 ACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* * * * * *
56352175 ACCTTGGTGGCTCAGATGAGGGGGAGCCTCGAGCACCATTGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* **
56352218 ACCTTGGT-GCTCGGATGTGCTGGAGCCTCGGCCACCATCGGTA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGG-A
* ** * * * *
56352261 ACCTTGGTGCCT-GGATGTGCGAAAGGCTCGAGCACGATCGGT
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* * * * * *
56352303 ACCTTGGT-TCTTGTATGTGCGAGAGCCTCGAGCACCA-CTGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATC-GGA
* **
56352345 ACCTTGGTGGCTCGGATGTGCGGGAGCCTTTG-ACACCATCAACA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCC-TCGAACACCATC-GGA
* * * *
56352389 ACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* *
56352431 ACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCA
56352468 AAGCAAAAGT
Statistics
Matches: 237, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
41 3 0.01
42 103 0.43
43 118 0.50
44 13 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (43 bp):
ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
Found at i:56352291 original size:85 final size:85
Alignment explanation
Indices: 56352130--56352467 Score: 364
Period size: 85 Copynumber: 4.0 Consensus size: 85
56352120 AGAGCCTCCA
* * * * * *
56352130 GCACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAG
1 GCACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTG
* *
56352195 GGGGAGCCTCGAGCACCATTG
65 CGGGAGCCTCGAGCACCATCG
*
56352216 GCACCTTGGTGCTCGGATGTGCTG-GAGCCTCG-GCCACCATCGGTAACCTTGGTGCCT-GGATG
1 GCACCTTGGTGCTTGGATGTGC-GAGAGCCTCGAG-CACCATCGG-AACCTTGGTGCCTCGGATG
** * *
56352278 TGCGAAAGGCTCGAGCACGATCG
63 TGCGGGAGCCTCGAGCACCATCG
* * * * *
56352301 GTACCTTGGTTCTTGTATGTGCGAGAGCCTCGAGCACCA-CTGGCACCTTGGTGGCTCGGATGTG
1 GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATC-GGAACCTTGGTGCCTCGGATGTG
* *
56352365 CGGGAGCCTTTGA-CACCATCA
65 CGGGAGCC-TCGAGCACCATCG
* * *
56352386 ACAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTG
1 GC-ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTG
56352450 CGGGAGCCTCGAGCACCA
65 CGGGAGCCTCGAGCACCA
56352468 AAGCAAAAGT
Statistics
Matches: 211, Mismatches: 30, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
84 16 0.08
85 120 0.57
86 74 0.35
87 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTGC
GGGAGCCTCGAGCACCATCG
Found at i:56352372 original size:128 final size:127
Alignment explanation
Indices: 56352132--56352467 Score: 402
Period size: 128 Copynumber: 2.6 Consensus size: 127
56352122 AGCCTCCAGC
* * ** * * ** * *
56352132 ACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAGGG
1 ACCTTGGT-GCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCG
* * * * ***
56352197 GGAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGCTGGAGCCTCGGCCACCATCGGTA
64 AGAGCCTCGAGCACCACTGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
* * * * *
56352261 ACCTTGGTGCCTGGATGTGCGAAAGGCTCGAGCACGATCGGTACCTTGGTTCTTGTATGTGCGAG
1 ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
**
56352326 AGCCTCGAGCACCACTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTTGACACCATCAACA
66 AGCCTCGAGCACCACTGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
* * *
56352389 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGG
1 ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
56352454 AGCCTCGAGCACCA
66 AGCCTCGAGCACCA
56352468 AAGCAAAAGT
Statistics
Matches: 175, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
127 34 0.19
128 133 0.76
129 8 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (127 bp):
ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
AGCCTCGAGCACCACTGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
Found at i:56361209 original size:24 final size:24
Alignment explanation
Indices: 56361153--56361210 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
56361143 TCCCTGTGAT
56361153 CCATCCCGGCGGTGCTCCAGCGAA
1 CCATCCCGGCGGTGCTCCAGCGAA
* * **
56361177 CCGTCCCGGTGGTGCTCTGGCGAA
1 CCATCCCGGCGGTGCTCCAGCGAA
*
56361201 CCATTCCGGC
1 CCATCCCGGC
56361211 AGCATAGGCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.40, G:0.31, T:0.17
Consensus pattern (24 bp):
CCATCCCGGCGGTGCTCCAGCGAA
Found at i:56361290 original size:42 final size:42
Alignment explanation
Indices: 56361244--56361378 Score: 110
Period size: 42 Copynumber: 3.2 Consensus size: 42
56361234 GAGCCTTGGG
* *
56361244 CACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGCA
1 CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
* ** * * **
56361286 CACCATTGGCAACCTAGGCCCTTGG-TCGTGAGAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGTGCTAGGAT-GTGAGGGAGCCTCGCA
* * * * * *
56361329 CACCATCAGTACCTAGGTGCTCGGAGGAGTGGGAGCCTCGCA
1 CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
56361371 CACCATCG
1 CACCATCG
56361379 CCAAACTAGG
Statistics
Matches: 68, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
42 39 0.57
43 29 0.43
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (42 bp):
CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
Found at i:56361363 original size:85 final size:84
Alignment explanation
Indices: 56361215--56361420 Score: 261
Period size: 85 Copynumber: 2.4 Consensus size: 84
56361205 TCCGGCAGCA
* * * * *
56361215 TAGGCCCTTGGTCGT-ACGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGA--GGAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAG
* * *
56361279 CCTCGCACACCATTGGCAACC
64 CCTCGCACACCATCGCCAAAC
* * *
56361300 TAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCAGTACCTAGGTGCTCGGAGGAGTGGGAGC
1 TAGGCCCTTGGTCGTGAG-GAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAGC
56361365 CTCGCACACCATCGCCAAAC
65 CTCGCACACCATCGCCAAAC
*
56361385 TAGGCCTTTGGTCGTGCAGGAGCCTCGGGCACCATC
1 TAGGCCCTTGGTCGTG-AGGAGCCTCGGGCACCATC
56361421 GGCAATCTAG
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
84 1 0.01
85 102 0.96
86 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGAGGAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAGCC
TCGCACACCATCGCCAAAC
Found at i:56361492 original size:85 final size:85
Alignment explanation
Indices: 56361398--56361906 Score: 484
Period size: 85 Copynumber: 6.0 Consensus size: 85
56361388 GCCTTTGGTC
* * *
56361398 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
56361463 CGGCACCTGGGCACTCGGAT
66 CGGCACCTGGGCGCTCAGAT
* * * * * *
56361483 GTGCTGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAAAGCCTCGGGCACCGT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
56361548 CGGCACCTAGGCGCT-TGAAT
66 CGGCACCTGGGCGCTCAG-AT
* ** * *** * * * *
56361568 GTGTAGGAGCCTCGGGTACCATCGACAAACTAGGCCCCCCGTCGTACGTGAGCGTCGGGCACGAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
*
56361633 TGGCACCTGGGCGCTCAGAT
66 CGGCACCTGGGCGCTCAGAT
* * * *
56361653 GTGCAGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTGCGAGAGCCTCAGGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * *
56361718 CGGCACCTCGGTGCT-ATGAC
66 CGGCACCTGGGCGCTCA-GAT
* * *** * ** * * * * *
56361738 CTGCGGGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCGTGTGGGAGCCTCGAGAACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * *
56361803 CGACACCTTGGAGCTTAGAT
66 CGGCACCTGGGCGCTCAGAT
* * * * *
56361823 GTACAGGAACCTCGGACAACATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
56361888 CGGCACCTAGGG-GCTCAGA
66 CGGCACCT-GGGCGCTCAGA
56361907 CACAATCGGC
Statistics
Matches: 335, Mismatches: 84, Indels: 10
0.78 0.20 0.02
Matches are distributed among these distances:
84 2 0.01
85 329 0.98
86 4 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CGGCACCTGGGCGCTCAGAT
Found at i:56361503 original size:128 final size:128
Alignment explanation
Indices: 56361270--56361590 Score: 364
Period size: 128 Copynumber: 2.5 Consensus size: 128
56361260 GTGCTAGGAT
* ** *
56361270 GTGCGGGAGCCTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
* ** *
56361335 CAGTACCTAGGTGCTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTC
66 CAGCACCTAGGCACTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCCTTGGTC
* * *
56361398 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
* * * * * *
56361463 CGGCACCTGGGCACTCGGATGTGCT-GGAGCCTCAG-ACACCATCGGCAACCTAGGCCCTTGGTC
66 CAGCACCTAGGCACTCGGAGGAG-TGGGAGCCTC-GCACACCATCGCCAAACTAGGCCCTTGGTC
** * * * *
56361526 GTGCAAAAGCCTCGGGCACCGTCGGC-ACCTAGGCGCTTGAAT-GTGTAG-GAGCCTCGGGTACC
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTG-AGAGAGCCTCGGGCACC
56361588 ATC
64 ATC
56361591 GACAAACTAG
Statistics
Matches: 163, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
127 29 0.18
128 132 0.81
129 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (128 bp):
GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
CAGCACCTAGGCACTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCCTTGGTC
Found at i:56361579 original size:42 final size:43
Alignment explanation
Indices: 56361275--56361898 Score: 228
Period size: 43 Copynumber: 14.7 Consensus size: 43
56361265 AGGATGTGCG
** * *
56361275 GGAGCCTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTG-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * ** * * * *
56361317 GAGAGCCTCGGGCACCATCAG-TACCTAGGTGCTCGGA-GGAGTG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
** * * * * *
56361360 GGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * *
56361403 GGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * * *
56361445 GAGAGCCTCGTGCACCATCGGC-ACCTGGGCACTCGGAT-GTGCT-
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTG-TA
* * * *
56361488 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
** * *
56361531 AAAGCCTCGGGCACCGTCGGC-ACCTAGGCGCTTGAAT-GTGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-ATCGTGTA
* * * **
56361573 GGAGCCTCGGGTACCATCGACAAACTAGGCCC---CCCGTCGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGT-GTA
* * * * * * *
56361614 CGTGAGCGTCGGGCACGATTGGC-ACCTGGGCGCTCAGAT-GTGCA
1 -G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
* * * * * * *
56361658 GGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * ** * **
56361700 GAGAGCCTCAGGCACCATCGGC-ACCTCGGTGCTATGA-CCTGCG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
* *** * * * * *
56361743 GGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * * * ** **
56361786 GGAGCCTCGAGAACCATCGAC-ACCTTGGAGCTTAGAT-GTACA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GATCGTGTA
* * * * * *
56361828 GGAACCTCGGACAACATCGGTAACCTAGGCCCTTGGTCGTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
56361870 GAGAGCCTCGGGCACCATCGGC-ACCTAGG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGG
56361899 GGCTCAGACA
Statistics
Matches: 404, Mismatches: 145, Indels: 66
0.66 0.24 0.11
Matches are distributed among these distances:
40 2 0.00
41 3 0.01
42 177 0.44
43 218 0.54
44 2 0.00
45 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
Found at i:56361591 original size:213 final size:213
Alignment explanation
Indices: 56361215--56361603 Score: 530
Period size: 213 Copynumber: 1.8 Consensus size: 213
56361205 TCCGGCAGCA
* * * **
56361215 TAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
* * *
56361280 CTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCAGTACCTAG
66 CTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGAGAAAGCCTCGGGCACCATCAGCACCTAG
* * * *
56361345 GTGCTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTCGTGCAGGAGCCT
131 GCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCCTTTGGTCGTGCAGGAGCCT
56361410 CGGGCACCATCGGCAATC
196 CGGGCACCATCGGCAATC
* * * *
56361428 TAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCATCGGCACCTGGGCACTCGGATGTGCTGGAGC
1 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
* *
56361493 CTCAG-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCA-AAAGCCTCGGGCACCGTCGGCACCT
66 CTC-GCACACCATCGGCAACCTAGGCCCTTGGTCGTG-AGAAAGCCTCGGGCACCATCAGCACCT
* * * ***
56361556 AGGCGCTTGAATGTGTAGGAGCCTCGGGTACCATCGACAAACTAGGCC
129 AGGCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCC
56361604 CCCCGTCGTA
Statistics
Matches: 150, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
213 148 0.99
214 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (213 bp):
TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
CTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGAGAAAGCCTCGGGCACCATCAGCACCTAG
GCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCCTTTGGTCGTGCAGGAGCCT
CGGGCACCATCGGCAATC
Done.